Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOC2L	26155	broad.mit.edu	37	1	892520	892521	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:892520_892521CC>TT	uc001abz.3	-	3	371_372	c.312_313GG>AA	c.(310-315)GAGGAG>GAAAAG	p.E105K	NOC2L_uc001aby.3_5'UTR|NOC2L_uc009vjq.2_Missense_Mutation_p.E105K	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	105	Poly-Glu.					nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		CCCTCTTCCTCCTCAGAGCTGT	0.584													49	178					0	0	6.4e-05	0	0
PLEKHN1	84069	broad.mit.edu	37	1	906161	906161	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:906161C>T	uc001ace.2	+	5	542	c.507C>T	c.(505-507)GCC>GCT	p.A169A	PLEKHN1_uc001acd.2_Intron|PLEKHN1_uc001acf.2_Intron	NM_032129	NP_115505	Q494U1	PKHN1_HUMAN	pleckstrin homology domain containing, family N	169	PH 1.										0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.00095)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CTTCCCGGGCCCCCAGAGGCA	0.672													13	36					0	0	0.00244969	0	0
MRPL20	55052	broad.mit.edu	37	1	1342391	1342392	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:1342391_1342392CC>AA	uc001afo.3	-	2	191_192	c.95_96GG>TT	c.(94-96)CGG>CTT	p.R32L	MRPL20_uc010nyn.1_Missense_Mutation_p.R32L	NM_017971	NP_060441	Q9BYC9	RM20_HUMAN	mitochondrial ribosomal protein L20 precursor	32							protein binding|rRNA binding				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TTTTCCTTCCCCGGAAGTGCTG	0.495													12	423					0	0	6.4e-05	0	0
MIB2	142678	broad.mit.edu	37	1	1563427	1563427	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:1563427C>T	uc001agg.2	+	14	2010	c.1883C>T	c.(1882-1884)TCC>TTC	p.S628F	MIB2_uc001agh.2_Missense_Mutation_p.S614F|MIB2_uc001agi.2_Missense_Mutation_p.S624F|MIB2_uc001agj.2_Missense_Mutation_p.S469F|MIB2_uc001agk.2_Missense_Mutation_p.S563F|MIB2_uc001agl.1_Missense_Mutation_p.S584F|MIB2_uc001agm.2_Missense_Mutation_p.S505F|MIB2_uc010nyq.1_Missense_Mutation_p.S584F|MIB2_uc009vkh.2_Missense_Mutation_p.S434F|MIB2_uc001agn.2_Missense_Mutation_p.S260F|MIB2_uc001ago.2_5'Flank	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	628	ANK 4.				Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CCCCTGCACTCCGCCATCTCG	0.657													18	36					0	0	0.000566183	0	0
CDK11B	984	broad.mit.edu	37	1	1573136	1573136	+	Silent	SNP	G	A	A	rs17434073		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:1573136G>A	uc001agv.1	-	17	1563	c.1452C>T	c.(1450-1452)ATC>ATT	p.I484I	CDK11B_uc009vkj.2_Silent_p.I141I|CDK11B_uc001ags.1_Silent_p.I342I|CDK11B_uc001agt.1_Silent_p.I267I|CDK11B_uc001aha.1_Silent_p.I450I|CDK11B_uc001agw.1_Silent_p.I439I|CDK11B_uc001agy.1_Silent_p.I482I|CDK11B_uc001agx.1_Silent_p.I473I|CDK11B_uc001agz.1_Silent_p.I228I	NM_033486	NP_277021	P21127	CD11B_HUMAN	cell division cycle 2-like 1 (PITSLRE proteins)	497	Protein kinase.				apoptosis|cell proliferation|mitosis|regulation of cell growth|regulation of mRNA processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity|protein binding			skin(1)	1						TAACGGTGACGATGTTGGGAT	0.617													44	265					0	0	0.000781405	0	0
PRKCZ	5590	broad.mit.edu	37	1	2080359	2080359	+	Missense_Mutation	SNP	C	T	T	rs146591213		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:2080359C>T	uc001aiq.2	+	8	844	c.683C>T	c.(682-684)TCG>TTG	p.S228L	PRKCZ_uc001air.2_Missense_Mutation_p.S45L|PRKCZ_uc010nyw.1_Missense_Mutation_p.S124L|PRKCZ_uc001ais.2_Missense_Mutation_p.S45L|PRKCZ_uc009vla.2_Missense_Mutation_p.S52L|PRKCZ_uc010nyx.1_RNA|PRKCZ_uc009vlb.2_Missense_Mutation_p.S41L	NM_002744	NP_002735	Q05513	KPCZ_HUMAN	protein kinase C, zeta isoform 1	228					anti-apoptosis|intracellular signal transduction|negative regulation of insulin receptor signaling pathway|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein complex assembly|peptidyl-serine phosphorylation|platelet activation	endosome	ATP binding|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(2)	6	all_cancers(77;0.000177)|all_epithelial(69;6.41e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.96e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.3e-23)|GBM - Glioblastoma multiforme(42;2.85e-08)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00294)|BRCA - Breast invasive adenocarcinoma(365;0.00493)|STAD - Stomach adenocarcinoma(132;0.00669)|KIRC - Kidney renal clear cell carcinoma(229;0.0411)|Lung(427;0.213)		AAAGACGACTCGGAGGTGAGT	0.532													28	72					0	0	0.00058488	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938827	2938827	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:2938827C>T	uc001ajz.2	+	1	782	c.577C>T	c.(577-579)CTC>TTC	p.L193F		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	193						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		CACGGAGCTCCTCATGCAGCT	0.627													22	56					0	0	0.00047179	0	0
MEGF6	1953	broad.mit.edu	37	1	3417559	3417559	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:3417559G>A	uc001akl.2	-	20	2773	c.2546C>T	c.(2545-2547)CCC>CTC	p.P849L	MEGF6_uc001akk.2_Missense_Mutation_p.P744L	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	849	EGF-like 14.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		GGTCCACCCGGGGGCACAGCT	0.647													24	59					0	0	0.000586117	0	0
CHD5	26038	broad.mit.edu	37	1	6195349	6195349	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:6195349G>A	uc001amb.1	-	18	2911	c.2811C>T	c.(2809-2811)TTC>TTT	p.F937F	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	937					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GCATGTTCTTGAACACGTCAG	0.597													38	108					0	0	0.000953801	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6529184	6529184	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:6529184C>T	uc001ano.1	-	20	2436	c.2335G>A	c.(2335-2337)GAA>AAA	p.E779K	PLEKHG5_uc001ann.1_Missense_Mutation_p.E760K|PLEKHG5_uc001anq.1_Missense_Mutation_p.E800K|PLEKHG5_uc001anp.1_Missense_Mutation_p.E800K|TNFRSF25_uc001ana.2_5'Flank|TNFRSF25_uc001anb.2_5'Flank|TNFRSF25_uc001anc.2_5'Flank|TNFRSF25_uc001and.2_5'Flank|TNFRSF25_uc009vlz.2_5'Flank|TNFRSF25_uc001ane.2_5'Flank|TNFRSF25_uc001anf.2_5'Flank|TNFRSF25_uc001ang.2_5'Flank|TNFRSF25_uc001anh.2_5'Flank|TNFRSF25_uc001ani.1_5'Flank|PLEKHG5_uc001anj.1_Missense_Mutation_p.E284K|PLEKHG5_uc009vma.1_Missense_Mutation_p.E563K|PLEKHG5_uc010nzr.1_Missense_Mutation_p.E792K|PLEKHG5_uc001ank.1_Missense_Mutation_p.E723K|PLEKHG5_uc009vmb.1_Missense_Mutation_p.E723K|PLEKHG5_uc001anl.1_Missense_Mutation_p.E723K|PLEKHG5_uc001anm.1_Missense_Mutation_p.E723K|PLEKHG5_uc001anr.1_5'UTR	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	779	Glu-rich.			Missing (in Ref. 6; BAC77354).	apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		tcctcgccttcctcctcctcc	0.433													31	57					0	0	0.001512	0	0
TAS1R1	80835	broad.mit.edu	37	1	6615455	6615455	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:6615455C>T	uc001ant.2	+	1	22	c.22C>T	c.(22-24)CTG>TTG	p.L8L	NOL9_uc001ans.2_5'Flank|NOL9_uc010nzs.1_5'Flank|TAS1R1_uc001anu.2_Silent_p.L8L|TAS1R1_uc001anv.2_Silent_p.L8L|TAS1R1_uc001anw.2_Silent_p.L8L	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	8					sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		CACGGCTCGCCTGGTCGGCCT	0.617													10	17					0	0	0.000673444	0	0
H6PD	9563	broad.mit.edu	37	1	9324785	9324785	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:9324785C>T	uc001apt.2	+	5	2506	c.2233C>T	c.(2233-2235)CTG>TTG	p.L745L		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	745	6-phosphogluconolactonase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	GGTGGCAGTCCTGGTCATGGG	0.657													16	50					0	0	0.000566183	0	0
KIF1B	23095	broad.mit.edu	37	1	10316337	10316337	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:10316337C>T	uc001aqx.3	+	3	341	c.139C>T	c.(139-141)CCA>TCA	p.P47S	KIF1B_uc001aqv.3_Missense_Mutation_p.P47S|KIF1B_uc001aqw.3_Missense_Mutation_p.P47S|KIF1B_uc001aqy.2_Missense_Mutation_p.P47S|KIF1B_uc001aqz.2_Missense_Mutation_p.P47S|KIF1B_uc001ara.2_Missense_Mutation_p.P47S|KIF1B_uc001arb.2_Missense_Mutation_p.P47S|KIF1B_uc009vmt.2_RNA	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	47	Kinesin-motor.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		AAAGGAAGCTCCAAAGTCCTT	0.398													31	79					0	0	0.000692331	0	0
KIF1B	23095	broad.mit.edu	37	1	10316344	10316344	+	Missense_Mutation	SNP	C	T	T	rs143654307		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:10316344C>T	uc001aqx.3	+	3	348	c.146C>T	c.(145-147)TCC>TTC	p.S49F	KIF1B_uc001aqv.3_Missense_Mutation_p.S49F|KIF1B_uc001aqw.3_Missense_Mutation_p.S49F|KIF1B_uc001aqy.2_Missense_Mutation_p.S49F|KIF1B_uc001aqz.2_Missense_Mutation_p.S49F|KIF1B_uc001ara.2_Missense_Mutation_p.S49F|KIF1B_uc001arb.2_Missense_Mutation_p.S49F|KIF1B_uc009vmt.2_RNA	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	49	Kinesin-motor.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GCTCCAAAGTCCTTCAGCTTC	0.403													41	68					0	0	0.000781405	0	0
CASZ1	54897	broad.mit.edu	37	1	10719910	10719910	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:10719910G>A	uc001aro.2	-	6	1509	c.1189C>T	c.(1189-1191)CCC>TCC	p.P397S	CASZ1_uc001arp.1_Missense_Mutation_p.P397S|CASZ1_uc009vmx.2_Missense_Mutation_p.P421S|CASZ1_uc001arq.1_Missense_Mutation_p.P256S	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	397	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		AGGGGTGCGGGAGCCAGGCTG	0.706													12	39					0	0	0.00136819	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835290	12835290	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:12835290C>T	uc001aui.2	+	1	307	c.280C>T	c.(280-282)CGC>TGC	p.R94C		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	94										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGAAGGTTCGCCCCAGGTG	0.592													23	60					0	0	0.000720815	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887587	12887587	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:12887587C>T	uc001auk.2	-	3	466	c.270G>A	c.(268-270)AGG>AGA	p.R90R		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	90											0						GTGTTTTGTTCCTCTTGGCAT	0.483													79	294					0	0	0.000781405	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887590	12887590	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:12887590C>T	uc001auk.2	-	3	463	c.267G>A	c.(265-267)AAG>AAA	p.K89K		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	89											0						TTTTGTTCCTCTTGGCATTGA	0.483													79	292					0	0	0.000781405	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12939636	12939637	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:12939636_12939637CC>TT	uc001aun.2	-	4	1236_1237	c.1165_1166GG>AA	c.(1165-1167)GGA>AAA	p.G389K		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	389	LRR 6.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GATGGGATTTCCACAGAAGCTG	0.525													61	275					0	0	6.4e-05	0	0
LOC440563	440563	broad.mit.edu	37	1	13183479	13183479	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:13183479G>A	uc010obg.1	-	1	489	c.394C>T	c.(394-396)CCT>TCT	p.P132S		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	132						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GGAGGAGGAGGAGGTACACGT	0.512													24	147					0	0	0.00229938	0	0
LOC440563	440563	broad.mit.edu	37	1	13183768	13183768	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:13183768C>T	uc010obg.1	-	1	200	c.105G>A	c.(103-105)GCG>GCA	p.A35A		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	35						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TGGAAAAGATCGCCTCCACAT	0.473													13	37					0	0	0.000308642	0	0
PRAMEF20	645425	broad.mit.edu	37	1	13743089	13743089	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:13743089T>C	uc009voa.1	+	2	377	c.278T>C	c.(277-279)GTT>GCT	p.V93A		NM_001099852	NP_001093322	Q5VT98	PRA20_HUMAN	PRAME family member 20	93										ovary(1)	1	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.5e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000156)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACCCACAGGGTTCGTCTCAGG	0.602													22	12					0	0	0.00178596	0	0
DNAJC16	23341	broad.mit.edu	37	1	15874796	15874796	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:15874796C>T	uc001aws.2	+	7	1016	c.896C>T	c.(895-897)TCA>TTA	p.S299L	DNAJC16_uc001awr.1_Missense_Mutation_p.S299L|DNAJC16_uc001awt.2_5'UTR	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	299	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GATTATTTATCATTTGGATAT	0.383													21	41					0	0	0.00188189	0	0
DDI2	84301	broad.mit.edu	37	1	15978366	15978366	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:15978366C>T	uc001awx.1	+	8	1255	c.1159C>T	c.(1159-1161)CTT>TTT	p.L387F	DDI2_uc009voj.1_Missense_Mutation_p.L128F	NM_032341	NP_115717	Q5TDH0	DDI2_HUMAN	DNA-damage inducible protein 2	387					proteolysis		aspartic-type endopeptidase activity				0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00327)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.03e-07)|COAD - Colon adenocarcinoma(227;4.48e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		AGCAGAAGCCCTTCAAAAATC	0.512													21	51					0	0	0.000586117	0	0
HSPB7	27129	broad.mit.edu	37	1	16342200	16342200	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:16342200C>T	uc001axo.2	-	3	1215	c.388G>A	c.(388-390)GAG>AAG	p.E130K	HSPB7_uc001axp.2_Missense_Mutation_p.E213K|HSPB7_uc001axq.2_Missense_Mutation_p.E222K|HSPB7_uc001axr.2_Missense_Mutation_p.E223K|HSPB7_uc001axs.2_Missense_Mutation_p.E205K	NM_014424	NP_055239	Q9UBY9	HSPB7_HUMAN	cardiovascular heat shock protein	130					regulation of heart contraction|response to heat|response to unfolded protein	Cajal body	protein C-terminus binding				0		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.21e-08)|COAD - Colon adenocarcinoma(227;5.5e-06)|BRCA - Breast invasive adenocarcinoma(304;9.08e-05)|Kidney(64;0.000162)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00656)|READ - Rectum adenocarcinoma(331;0.0649)		TCCACGTCCTCCGGCAGCTGG	0.677													24	106					0	0	0.00106085	0	0
CLCNKA	1187	broad.mit.edu	37	1	16355751	16355752	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:16355751_16355752GG>AT	uc001axu.2	+	12	1264_1265	c.1184_1185GG>AT	c.(1183-1185)CGG>CAT	p.R395H	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.R395H|CLCNKA_uc010obw.1_Missense_Mutation_p.R352H|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_Missense_Mutation_p.R42H|CLCNKA_uc010oby.1_Missense_Mutation_p.V125F	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	395					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	TACCACCCGCGGTTCACCATCT	0.639													20	64					0	0	6.4e-05	0	0
CROCC	9696	broad.mit.edu	37	1	17263258	17263259	+	Silent	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:17263258_17263259CC>TT	uc001azt.2	+	9	1152_1153	c.1083_1084CC>TT	c.(1081-1086)GCCCTG>GCTTTG	p.361_362AL>AL	CROCC_uc009voy.1_Silent_p.64_65AL>AL|CROCC_uc009voz.1_Silent_p.124_125AL>AL	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	361_362	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		AGAAACAGGCCCTGCTGCAGGC	0.683													7	19					0	0	6.4e-05	0	0
AKR7A3	22977	broad.mit.edu	37	1	19611521	19611521	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:19611521G>A	uc001bbv.1	-	4	672	c.595C>T	c.(595-597)CCT>TCT	p.P199S		NM_012067	NP_036199	O95154	ARK73_HUMAN	aldo-keto reductase family 7, member A3	199	NADP.				cellular aldehyde metabolic process	cytosol	aldo-keto reductase (NADP) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;1.78e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|GBM - Glioblastoma multiforme(114;0.00276)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGCCAGAGGGTTGAAGGCA	0.582													20	112					0	0	0.00047179	0	0
HSPG2	3339	broad.mit.edu	37	1	22155968	22155968	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:22155968A>T	uc001bfj.2	-	87	11940	c.11900T>A	c.(11899-11901)CTG>CAG	p.L3967Q	HSPG2_uc001bfi.2_5'UTR|HSPG2_uc009vqd.2_Missense_Mutation_p.L3968Q	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3967	Laminin G-like 2.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CCCGCTGAACAGCAGGACCCC	0.657													14	41					0	0	0.000422831	0	0
HSPG2	3339	broad.mit.edu	37	1	22170655	22170655	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:22170655G>A	uc001bfj.2	-	65	8642	c.8602C>T	c.(8602-8604)CCT>TCT	p.P2868S	HSPG2_uc009vqd.2_Missense_Mutation_p.P2869S	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2868	Ig-like C2-type 14.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TGCCGGGCAGGGAGGTTTCCT	0.632													24	82					0	0	0.000720815	0	0
HSPG2	3339	broad.mit.edu	37	1	22181372	22181372	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:22181372G>A	uc001bfj.2	-	48	6142	c.6102C>T	c.(6100-6102)GCC>GCT	p.A2034A	HSPG2_uc009vqd.2_Silent_p.A2035A	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2034	Ig-like C2-type 5.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TCCGGGCCTGGGCAGTGCCTG	0.657													12	36					0	0	0.000422831	0	0
EPHB2	2048	broad.mit.edu	37	1	23233402	23233402	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:23233402G>A	uc009vqj.1	+	11	2233	c.2088G>A	c.(2086-2088)ATG>ATA	p.M696I	EPHB2_uc001bge.2_Missense_Mutation_p.M697I|EPHB2_uc001bgf.2_Missense_Mutation_p.M696I|EPHB2_uc010odu.1_Missense_Mutation_p.M638I	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	696	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CACCTGTGATGATCATCACCG	0.592									Hereditary_Prostate_Cancer				17	42					0	0	0.000566183	0	0
EPHB2	2048	broad.mit.edu	37	1	23234541	23234541	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:23234541C>T	uc009vqj.1	+	12	2377	c.2232C>T	c.(2230-2232)CAC>CAT	p.H744H	EPHB2_uc001bge.2_Silent_p.H745H|EPHB2_uc001bgf.2_Silent_p.H744H|EPHB2_uc010odu.1_Silent_p.H686H	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	744	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		ACTATGTTCACCGTGACCTGG	0.557									Hereditary_Prostate_Cancer				31	109					0	0	0.0024448	0	0
ASAP3	55616	broad.mit.edu	37	1	23760133	23760133	+	Missense_Mutation	SNP	C	T	T	rs138556791	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:23760133C>T	uc001bha.2	-	20	2129	c.2005G>A	c.(2005-2007)GAG>AAG	p.E669K	ASAP3_uc001bgy.1_Missense_Mutation_p.E173K|ASAP3_uc001bgz.1_RNA|ASAP3_uc010odz.1_Missense_Mutation_p.E538K|ASAP3_uc010oea.1_Missense_Mutation_p.E660K|ASAP3_uc001bhb.2_Missense_Mutation_p.E192K	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	669					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCCTCACACTCCTTGTGGTGC	0.542													23	73					0	0	0.000586117	0	0
MYOM3	127294	broad.mit.edu	37	1	24410969	24410969	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:24410969G>A	uc001bin.3	-	16	2122	c.1959C>T	c.(1957-1959)ATC>ATT	p.I653I	MYOM3_uc001bim.3_Silent_p.I310I|MYOM3_uc001bio.2_Silent_p.I653I|MYOM3_uc001bip.1_Silent_p.I310I	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	653	Fibronectin type-III 3.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TGGTGCCTTGGATGGGTTTGT	0.338													26	115					0	0	0.00178596	0	0
C1orf130	400746	broad.mit.edu	37	1	24932131	24932131	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:24932131G>A	uc001bjk.1	+	4	268	c.202G>A	c.(202-204)GGC>AGC	p.G68S		NM_001010980	NP_001010980	Q5T1S8	CA130_HUMAN	chromosome 1 open reading frame 130	68						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.0119)|all_lung(284;0.0154)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0439)|OV - Ovarian serous cystadenocarcinoma(117;1.48e-24)|Colorectal(126;6.93e-08)|COAD - Colon adenocarcinoma(152;3.69e-06)|GBM - Glioblastoma multiforme(114;0.00036)|BRCA - Breast invasive adenocarcinoma(304;0.00189)|KIRC - Kidney renal clear cell carcinoma(1967;0.00382)|STAD - Stomach adenocarcinoma(196;0.00521)|READ - Rectum adenocarcinoma(331;0.0659)|Lung(427;0.144)		AGAGCCCAAGGGCCCCAAGCC	0.597													16	42					0	0	0.000566183	0	0
PAQR7	164091	broad.mit.edu	37	1	26189515	26189516	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:26189515_26189516CC>TT	uc001bkx.2	-	2	1482_1483	c.815_816GG>AA	c.(814-816)GGG>GAA	p.G272E		NM_178422	NP_848509	Q86WK9	MPRA_HUMAN	progestin and adipoQ receptor family member VII	272	Extracellular (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding			breast(3)	3		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.16e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000724)|BRCA - Breast invasive adenocarcinoma(304;0.000965)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0136)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGGCCCTGCCCGAAGACATG	0.594													23	60					0	0	6.4e-05	0	0
CNKSR1	10256	broad.mit.edu	37	1	26511561	26511561	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:26511561G>A	uc001bln.3	+	14	1271	c.1213G>A	c.(1213-1215)GAC>AAC	p.D405N	CNKSR1_uc010oex.1_RNA|CNKSR1_uc001blm.3_Missense_Mutation_p.D398N|CNKSR1_uc009vsd.2_Missense_Mutation_p.D140N|CNKSR1_uc009vse.2_Missense_Mutation_p.D140N|CNKSR1_uc001blo.2_Missense_Mutation_p.D140N	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	405	PH.				Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCCGGCCGGACTGTGACGG	0.701													22	28					0	0	0.00229938	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26873424	26873424	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:26873424C>T	uc001bmr.1	+	3	338	c.175C>T	c.(175-177)CCA>TCA	p.P59S	RPS6KA1_uc010ofe.1_Intron|RPS6KA1_uc010off.1_Missense_Mutation_p.P43S|RPS6KA1_uc001bms.1_Missense_Mutation_p.P68S|RPS6KA1_uc009vsl.1_5'UTR	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	59					axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		GAAGGCTGATCCATCCCATTT	0.562													34	85					0	0	0.000953801	0	0
SMPDL3B	27293	broad.mit.edu	37	1	28271942	28271942	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:28271942C>T	uc001bpg.2	+	2	452	c.261C>T	c.(259-261)TTC>TTT	p.F87F	SMPDL3B_uc001bpf.2_Silent_p.F87F|SMPDL3B_uc010ofq.1_5'UTR|SMPDL3B_uc010ofr.1_Silent_p.F87F	NM_014474	NP_055289	Q92485	ASM3B_HUMAN	acid sphingomyelinase-like phosphodiesterase 3B	87					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity			ovary(3)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000431)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;5.68e-24)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00587)|READ - Rectum adenocarcinoma(331;0.055)		AGCCAGACTTCATTCTCTGGA	0.383													10	33					0	0	0.000978159	0	0
SESN2	83667	broad.mit.edu	37	1	28599131	28599131	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:28599131G>A	uc001bps.2	+	5	930	c.577G>A	c.(577-579)GAG>AAG	p.E193K		NM_031459	NP_113647	P58004	SESN2_HUMAN	sestrin 2	193					cell cycle arrest	cytoplasm|nucleus				skin(3)|ovary(2)|pancreas(1)|lung(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;4.76e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;2.98e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|READ - Rectum adenocarcinoma(331;0.0649)		GTCCCTGGCCGAGCTCATTCA	0.642													28	102					0	0	0.000814825	0	0
MECR	51102	broad.mit.edu	37	1	29543154	29543154	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:29543154G>T	uc001brq.1	-	2	256	c.220C>A	c.(220-222)CGT>AGT	p.R74S	MECR_uc001brp.1_5'UTR|MECR_uc001brr.1_5'UTR|MECR_uc001brs.1_RNA|MECR_uc001brt.1_5'UTR|MECR_uc010ofz.1_Missense_Mutation_p.R74S	NM_016011	NP_057095	Q9BV79	MECR_HUMAN	trans-2-enoyl-CoA reductase, mitochondrial	74					fatty acid biosynthetic process	mitochondrion	trans-2-enoyl-CoA reductase (NADPH) activity|zinc ion binding			ovary(1)	1		Colorectal(325;0.000389)|Breast(348;0.00765)|Lung NSC(340;0.0081)|all_lung(284;0.00914)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.39e-07)|COAD - Colon adenocarcinoma(152;2.04e-05)|STAD - Stomach adenocarcinoma(196;0.0195)|BRCA - Breast invasive adenocarcinoma(304;0.053)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.137)		ATCTTCACACGGACATCTGAT	0.458													97	228					2.2063e-47	7.85662e-47	0.000781405	1	0
PTPRU	10076	broad.mit.edu	37	1	29630521	29630521	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:29630521G>A	uc001bru.2	+	17	2771	c.2661G>A	c.(2659-2661)AAG>AAA	p.K887K	PTPRU_uc001brv.2_Silent_p.K877K|PTPRU_uc001brw.2_Silent_p.K877K|PTPRU_uc009vtq.2_Silent_p.K877K|PTPRU_uc009vtr.2_Silent_p.K877K	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	887	Mediates interaction with CTNNB1 (By similarity).|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		ACCAGATGAAGACGGCCGAGG	0.652													38	68					0	0	0.0025221	0	0
COL16A1	1307	broad.mit.edu	37	1	32120952	32120952	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:32120952G>A	uc001btk.1	-	67	4618	c.4253C>T	c.(4252-4254)TCG>TTG	p.S1418L	COL16A1_uc001bti.1_Missense_Mutation_p.S32L|COL16A1_uc001btj.1_Missense_Mutation_p.S1216L	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	1418	Triple-helical region 2 (COL2) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		AGGGCTCCCCGAAGGCCCCGG	0.682													10	39					0	0	0.000673444	0	0
BAI2	576	broad.mit.edu	37	1	32193193	32193193	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:32193193G>A	uc001btn.2	-	33	4940	c.4586C>T	c.(4585-4587)CCT>CTT	p.P1529L	BAI2_uc001btm.2_Missense_Mutation_p.P523L|BAI2_uc001btp.1_3'UTR|BAI2_uc010ogn.1_Missense_Mutation_p.P499L|BAI2_uc010ogo.1_Missense_Mutation_p.P1119L|BAI2_uc010ogp.1_Missense_Mutation_p.P1462L|BAI2_uc010ogq.1_Missense_Mutation_p.P1495L|BAI2_uc001bto.2_Missense_Mutation_p.P1528L	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1529	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GCGCTCCCCAGGGCTGGGCTT	0.393													9	20					0	0	0.000442599	0	0
BAI2	576	broad.mit.edu	37	1	32207011	32207011	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:32207011C>T	uc001btn.2	-	11	2111	c.1757G>A	c.(1756-1758)CGC>CAC	p.R586H	BAI2_uc010ogo.1_Missense_Mutation_p.R228H|BAI2_uc010ogp.1_Missense_Mutation_p.R519H|BAI2_uc010ogq.1_Missense_Mutation_p.R586H|BAI2_uc001bto.2_Missense_Mutation_p.R586H|BAI2_uc001btq.1_Missense_Mutation_p.R519H|BAI2_uc010ogr.1_Intron	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	586	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GGAGATGCAGCGAGCAAAGCT	0.622													10	19					0	0	0.000673444	0	0
LCK	3932	broad.mit.edu	37	1	32745728	32745728	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:32745728G>A	uc001bux.2	+	12	1382	c.1244G>A	c.(1243-1245)GGG>GAG	p.G415E	LCK_uc001buy.2_Missense_Mutation_p.G415E|LCK_uc001buz.2_Missense_Mutation_p.G445E|LCK_uc010ohc.1_Missense_Mutation_p.G459E|LCK_uc001bva.2_Missense_Mutation_p.G422E	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	415	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	ATTAACTACGGGACATTCACC	0.557			T	TRB@	T-ALL								21	38					0	0	0.00229938	0	0
BSDC1	55108	broad.mit.edu	37	1	32834141	32834141	+	Silent	SNP	C	A	A	rs147779640	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:32834141C>A	uc001bvh.3	-	10	1214	c.1167G>T	c.(1165-1167)ACG>ACT	p.T389T	BSDC1_uc010ohg.1_Silent_p.T406T|BSDC1_uc010ohh.1_Silent_p.T333T|BSDC1_uc010ohi.1_Silent_p.T294T|BSDC1_uc001bvg.3_RNA|BSDC1_uc001bvj.2_Silent_p.T285T|BSDC1_uc001bvi.2_Silent_p.T406T	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b	389							protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CACTGATGTCCGTGCTTGAGC	0.552													6	113					0.000157383	0.000554214	0.000157383	1	0
HPCA	3208	broad.mit.edu	37	1	33359215	33359215	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:33359215G>A	uc001bwh.2	+	3	509	c.469G>A	c.(469-471)GAC>AAC	p.D157N		NM_002143	NP_002134	P84074	HPCA_HUMAN	hippocalcin	157	EF-hand 4.|3 (Potential).						actin binding|calcium ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				CCGCCAAATGGACACAAACAA	0.552													21	39					0	0	0.00047179	0	0
CSMD2	114784	broad.mit.edu	37	1	33990616	33990616	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:33990616G>A	uc001bxn.1	-	65	9859	c.9830C>T	c.(9829-9831)TCC>TTC	p.S3277F	CSMD2_uc001bxm.1_Missense_Mutation_p.S3421F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3277	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TTTCCACAGGGAATTCTTGGC	0.502													70	149					0	0	0.000781405	0	0
CSMD2	114784	broad.mit.edu	37	1	34190148	34190148	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:34190148G>A	uc001bxn.1	-	18	2762	c.2733C>T	c.(2731-2733)TTC>TTT	p.F911F	CSMD2_uc001bxm.1_Silent_p.F951F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	911	Sushi 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGCTCCACTGGAAGTTGGGCT	0.587													11	32					0	0	0.00185496	0	0
CSMD2	114784	broad.mit.edu	37	1	34190950	34190950	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:34190950T>A	uc001bxn.1	-	17	2604	c.2575A>T	c.(2575-2577)ACT>TCT	p.T859S	CSMD2_uc001bxm.1_Missense_Mutation_p.T899S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	859	CUB 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGAGACTCACTCTCATAGCGG	0.582													16	27					0	0	0.000566183	0	0
CSMD2	114784	broad.mit.edu	37	1	34238348	34238348	+	Silent	SNP	G	A	A	rs144733811	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:34238348G>A	uc001bxn.1	-	13	1577	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I	CSMD2_uc001bxm.1_Silent_p.I556I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	516	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCCCTGCTCGATCTCTGAAA	0.527													9	49					0	0	0.000274275	0	0
TEKT2	27285	broad.mit.edu	37	1	36552870	36552870	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:36552870G>A	uc001bzr.2	+	7	940	c.813G>A	c.(811-813)GAG>GAA	p.E271E	TEKT2_uc001bzs.2_Silent_p.E177E|ADPRHL2_uc001bzt.2_5'Flank|ADPRHL2_uc001bzu.2_5'Flank	NM_014466	NP_055281	Q9UIF3	TEKT2_HUMAN	tektin 2	271	Potential.				cell projection organization|microtubule cytoskeleton organization	actin cytoskeleton|cilium axoneme|flagellar axoneme|focal adhesion|microtubule|nucleolus					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGCTGCGGGAGATGGAGAAAG	0.557													13	63					0	0	0.00244969	0	0
ADPRHL2	54936	broad.mit.edu	37	1	36558978	36558978	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:36558978G>C	uc001bzt.2	+	6	1136	c.1083G>C	c.(1081-1083)CAG>CAC	p.Q361H	ADPRHL2_uc001bzu.2_Missense_Mutation_p.Q207H	NM_017825	NP_060295	Q9NX46	ARHL2_HUMAN	ADP-ribosylhydrolase like 2	361						cytoplasm|nucleus	metal ion binding|poly(ADP-ribose) glycohydrolase activity			pancreas(1)	1		Myeloproliferative disorder(586;0.0393)				GTGTCTTCCAGAAGAGTTGAT	0.572													40	124					0	0	0.0025221	0	0
CSF3R	1441	broad.mit.edu	37	1	36932837	36932837	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:36932837C>T	uc001caw.1	-	16	2212	c.2034G>A	c.(2032-2034)ATG>ATA	p.M678I	MRPS15_uc001cas.2_5'Flank|CSF3R_uc001cat.1_Missense_Mutation_p.M240I|CSF3R_uc009vvc.1_Missense_Mutation_p.M207I|CSF3R_uc001cau.1_Missense_Mutation_p.M78I|CSF3R_uc001cav.1_Missense_Mutation_p.M678I|CSF3R_uc001cax.1_Missense_Mutation_p.M678I|CSF3R_uc001cay.1_Nonsense_Mutation_p.W647*	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	678	Cytoplasmic (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TCACCTCCTCCATGATTGTGG	0.602													68	96					0	0	0.000781405	0	0
CSF3R	1441	broad.mit.edu	37	1	36937222	36937222	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:36937222C>T	uc001caw.1	-	10	1275	c.1097G>A	c.(1096-1098)GGA>GAA	p.G366E	CSF3R_uc001cat.1_5'Flank|CSF3R_uc009vvc.1_5'UTR|CSF3R_uc001cau.1_5'UTR|CSF3R_uc001cav.1_Missense_Mutation_p.G366E|CSF3R_uc001cax.1_Missense_Mutation_p.G366E|CSF3R_uc001cay.1_Missense_Mutation_p.G366E	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	366	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TTGGATCCGTCCGCTGTCTTC	0.597													40	123					0	0	0.00222228	0	0
MTF1	4520	broad.mit.edu	37	1	38288307	38288307	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:38288307G>A	uc001cce.1	-	9	1394	c.1253C>T	c.(1252-1254)TCT>TTT	p.S418F	MTF1_uc009vvj.1_Missense_Mutation_p.S109F	NM_005955	NP_005946	Q14872	MTF1_HUMAN	metal-regulatory transcription factor 1	418						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			ovary(1)|pancreas(1)	2	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AAGTGGAAGAGATAAAGATGC	0.517													20	116					0	0	0.000586117	0	0
MTF1	4520	broad.mit.edu	37	1	38288311	38288311	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:38288311A>C	uc001cce.1	-	9	1390	c.1249T>G	c.(1249-1251)TTA>GTA	p.L417V	MTF1_uc009vvj.1_Missense_Mutation_p.L108V	NM_005955	NP_005946	Q14872	MTF1_HUMAN	metal-regulatory transcription factor 1	417						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			ovary(1)|pancreas(1)	2	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GGAAGAGATAAAGATGCTGAA	0.512													22	120					0	0	0.000720815	0	0
MACF1	23499	broad.mit.edu	37	1	39800435	39800435	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:39800435G>A	uc010oiu.1	+	1	3626	c.3495G>A	c.(3493-3495)CAG>CAA	p.Q1165Q	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	2730	Plectin 11.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CATCTCATCAGGTGTTAAATG	0.383													19	74					0	0	0.00121646	0	0
MACF1	23499	broad.mit.edu	37	1	39905145	39905145	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:39905145C>T	uc010oiu.1	+	37	13880	c.13749C>T	c.(13747-13749)ATC>ATT	p.I4583I	MACF1_uc010ois.1_Silent_p.I4081I	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATCCTTCCATCATCAAACAAC	0.438													32	117					0	0	0.00058488	0	0
MACF1	23499	broad.mit.edu	37	1	39908123	39908123	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:39908123C>T	uc010oiu.1	+	42	14448	c.14317C>T	c.(14317-14319)CAG>TAG	p.Q4773*	MACF1_uc010ois.1_Nonsense_Mutation_p.Q4271*	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGGTCAGTTCCAGCATGCCTT	0.438													25	93					0	0	0.000720815	0	0
BMP8B	656	broad.mit.edu	37	1	40230324	40230324	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:40230324G>T	uc001cdz.1	-	4	1215	c.839C>A	c.(838-840)CCG>CAG	p.P280Q	BMP8B_uc001cea.1_Missense_Mutation_p.P305Q	NM_001720	NP_001711	P34820	BMP8B_HUMAN	bone morphogenetic protein 8B preproprotein	280					cartilage development|cell differentiation|growth|ossification	extracellular space	cytokine activity|growth factor activity				0	all_cancers(7;5.56e-14)|all_lung(5;3.88e-17)|all_epithelial(6;3.78e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;1.92e-17)|all cancers(16;4.03e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GTTGGCCTGCGGCAGCTCGTT	0.647													5	94					0.00198382	0.00694728	0.00198382	1	0
CCDC30	728621	broad.mit.edu	37	1	43076720	43076720	+	Silent	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:43076720A>G	uc009vwk.1	+	10	1565	c.1455A>G	c.(1453-1455)GAA>GAG	p.E485E	CCDC30_uc001chm.2_Silent_p.E183E|CCDC30_uc001chn.2_Silent_p.E274E	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	485	Potential.										0						CTCTACGTGAAGAATATTTGC	0.358													23	62					0	0	0.000720815	0	0
CLDN19	149461	broad.mit.edu	37	1	43203944	43203944	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:43203944C>T	uc001cht.1	-	3	620	c.429G>A	c.(427-429)CTG>CTA	p.L143L	CLDN19_uc001chu.2_Silent_p.L143L|CLDN19_uc010ojv.1_Intron	NM_148960	NP_683763	Q8N6F1	CLD19_HUMAN	claudin 19 isoform a	143	Extracellular (Potential).				calcium-independent cell-cell adhesion|response to stimulus|visual perception	basolateral plasma membrane|integral to membrane|tight junction	identical protein binding				0	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCTGGGTCACCAGGGTGGCAT	0.602													16	76					0	0	0.000958276	0	0
LEPRE1	64175	broad.mit.edu	37	1	43212485	43212485	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:43212485G>A	uc001chv.2	-	15	2207	c.2094C>T	c.(2092-2094)TTC>TTT	p.F698F	LEPRE1_uc001chw.2_3'UTR|LEPRE1_uc001chx.3_3'UTR	NM_022356	NP_071751	Q32P28	P3H1_HUMAN	leprecan 1 isoform 1	698					negative regulation of cell proliferation	endoplasmic reticulum|proteinaceous extracellular matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			ovary(3)|lung(1)	4	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)			L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTTCTGGGCTGAAGAGCATCT	0.597													5	15					0	0	0.000602214	0	0
KIAA0467	23334	broad.mit.edu	37	1	43882302	43882302	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:43882302C>T	uc009vws.1	+	7	953	c.869C>T	c.(868-870)TCC>TTC	p.S290F				Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	290						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GTGGCTTGTTCCTTTGTCCAG	0.488													5	18					0	0	0.000602214	0	0
KIAA0467	23334	broad.mit.edu	37	1	43896733	43896733	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:43896733C>T	uc001cjk.1	+	18	2653	c.2191C>T	c.(2191-2193)CCC>TCC	p.P731S		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1630						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGTGGAGCTCCCCACGGCCTC	0.602													12	75					0	0	0.00136819	0	0
ST3GAL3	6487	broad.mit.edu	37	1	44360113	44360113	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:44360113C>T	uc001ckc.2	+	6	538	c.361C>T	c.(361-363)CGG>TGG	p.R121W	ST3GAL3_uc009vwu.1_RNA|ST3GAL3_uc010okj.1_RNA|ST3GAL3_uc001cjz.2_Missense_Mutation_p.R136W|ST3GAL3_uc001cka.2_Missense_Mutation_p.R105W|ST3GAL3_uc001ckb.2_Missense_Mutation_p.R190W|ST3GAL3_uc001ckd.2_Missense_Mutation_p.R175W|ST3GAL3_uc001cke.2_Missense_Mutation_p.R105W|ST3GAL3_uc001ckf.2_Missense_Mutation_p.R159W|ST3GAL3_uc001ckg.2_Missense_Mutation_p.R121W|ST3GAL3_uc001ckh.2_Missense_Mutation_p.R136W|ST3GAL3_uc001cki.2_Missense_Mutation_p.R121W|ST3GAL3_uc009vwv.2_Missense_Mutation_p.R121W|ST3GAL3_uc001ckj.2_RNA|ST3GAL3_uc009vww.2_RNA|ST3GAL3_uc001ckk.2_Missense_Mutation_p.R90W|ST3GAL3_uc009vwy.2_Missense_Mutation_p.R27W|ST3GAL3_uc009vwx.2_RNA|ST3GAL3_uc001ckm.2_Missense_Mutation_p.R120W|ST3GAL3_uc001ckl.2_Missense_Mutation_p.R121W|ST3GAL3_uc009vwz.2_Silent_p.S10S|ST3GAL3_uc001ckn.2_RNA|ST3GAL3_uc001ckp.2_Missense_Mutation_p.R120W|ST3GAL3_uc001cko.2_Missense_Mutation_p.R105W|ST3GAL3_uc009vxa.2_5'UTR|ST3GAL3_uc001ckq.2_Missense_Mutation_p.R105W|ST3GAL3_uc001ckr.2_Missense_Mutation_p.R74W|ST3GAL3_uc009vxb.2_Intron	NM_006279	NP_006270	Q11203	SIAT6_HUMAN	sialyltransferase 6 isoform j	121	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	N-acetyllactosaminide alpha-2,3-sialyltransferase activity	p.R190W(1)		ovary(3)	3	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0518)				GGCTAGAATCCGGGAGTTCGT	0.512													88	193					0	0	0.000781405	0	0
B4GALT2	8704	broad.mit.edu	37	1	44451195	44451195	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:44451195C>T	uc001clg.2	+	6	1240	c.870C>T	c.(868-870)TCC>TCT	p.S290S	B4GALT2_uc001clh.2_Silent_p.S224S|B4GALT2_uc010okl.1_Silent_p.S319S|B4GALT2_uc001cli.2_Silent_p.S290S	NM_003780	NP_003771	O60909	B4GT2_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	290	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			N-Acetyl-D-glucosamine(DB00141)	TCAGGATCTCCCTGACTGGGA	0.607													30	88					0	0	0.00058488	0	0
SLC6A9	6536	broad.mit.edu	37	1	44463298	44463298	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:44463298G>A	uc001cll.2	-	14	2232	c.2040C>T	c.(2038-2040)GTC>GTT	p.V680V	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|SLC6A9_uc001clm.2_Silent_p.V626V|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.V611V|SLC6A9_uc001cln.2_Silent_p.V607V|SLC6A9_uc010oko.1_Silent_p.V496V	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	680	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	GCAGTGGCTGGACCTCGAAGC	0.662													70	207					0	0	0.000781405	0	0
KIF2C	11004	broad.mit.edu	37	1	45220441	45220441	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:45220441C>T	uc001cmg.3	+	8	798	c.683C>T	c.(682-684)CCA>CTA	p.P228L	KIF2C_uc010olb.1_Missense_Mutation_p.P187L|KIF2C_uc010olc.1_Missense_Mutation_p.P115L|KIF2C_uc001cmh.3_Missense_Mutation_p.P174L	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	228	Negative regulator of microtubule-binding (By similarity).|Globular (Potential).				blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AGTAGTTTTCCAAACTGGGAA	0.433													50	151					0	0	0.000781405	0	0
MAST2	23139	broad.mit.edu	37	1	46488611	46488611	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:46488611C>T	uc001cov.2	+	13	1736	c.1453C>T	c.(1453-1455)CCT>TCT	p.P485S	MAST2_uc001cow.2_Missense_Mutation_p.P485S|MAST2_uc001coy.1_Missense_Mutation_p.P159S|MAST2_uc001coz.1_Missense_Mutation_p.P370S|MAST2_uc009vya.2_Missense_Mutation_p.P407S|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	485					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					CTGTGACAGTCCTGACACTCC	0.473													39	75					0	0	0.000781405	0	0
CYP4A11	1579	broad.mit.edu	37	1	47398684	47398684	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:47398684G>A	uc001cqp.3	-	10	1309	c.1258C>T	c.(1258-1260)CAC>TAC	p.H420Y	CYP4A11_uc001cqq.2_Missense_Mutation_p.H420Y	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	420					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TTTGGGTTGTGGTGAAGGCCA	0.517													105	210					0	0	0.000781405	0	0
CYP4A22	284541	broad.mit.edu	37	1	47606553	47606553	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:47606553C>T	uc001cqv.1	+	2	348	c.297C>T	c.(295-297)CTC>CTT	p.L99L	CYP4A22_uc009vyo.2_Silent_p.L99L|CYP4A22_uc009vyp.2_Silent_p.L99L	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	99						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GTGTCCAGCTCTATGACCCTG	0.517													8	105					0	0	0.000978159	0	0
CYP4A22	284541	broad.mit.edu	37	1	47607897	47607897	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:47607897G>A	uc001cqv.1	+	4	551	c.500G>A	c.(499-501)CGA>CAA	p.R167Q	CYP4A22_uc009vyo.2_Missense_Mutation_p.R167Q|CYP4A22_uc009vyp.2_Missense_Mutation_p.R167Q	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	167						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GACTCTGTACGAGTGATGCTG	0.567													18	43					0	0	0.00074312	0	0
STIL	6491	broad.mit.edu	37	1	47716973	47716973	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:47716973C>T	uc001crc.1	-	17	3854	c.3699G>A	c.(3697-3699)GGG>GGA	p.G1233G	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Silent_p.G1187G|STIL_uc010omo.1_Silent_p.G1216G|STIL_uc001crd.1_Silent_p.G1234G|STIL_uc001cre.1_Silent_p.G1233G	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	1233					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				ACTCTGCTTTCCCGGTTCGAA	0.398													80	154					0	0	0.000781405	0	0
STIL	6491	broad.mit.edu	37	1	47755223	47755223	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:47755223G>A	uc001crc.1	-	9	1062	c.907C>T	c.(907-909)CTC>TTC	p.L303F	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.L256F|STIL_uc010omo.1_Missense_Mutation_p.L303F|STIL_uc001crd.1_Missense_Mutation_p.L303F|STIL_uc001cre.1_Missense_Mutation_p.L303F|STIL_uc001crg.1_Missense_Mutation_p.L256F	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	303					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				ATAGAATAGAGAACTATGATG	0.338													10	169					0	0	0.000978159	0	0
TTC39A	22996	broad.mit.edu	37	1	51754542	51754542	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:51754542C>T	uc001csl.2	-	17	1792	c.1687G>A	c.(1687-1689)GAA>AAA	p.E563K	TTC39A_uc001csk.2_Missense_Mutation_p.E528K|TTC39A_uc010ond.1_Missense_Mutation_p.E500K|TTC39A_uc010one.1_Missense_Mutation_p.E527K|TTC39A_uc010onf.1_Missense_Mutation_p.E531K|TTC39A_uc001csj.2_Missense_Mutation_p.E164K	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	563	TPR 3.						binding			skin(1)	1						ATGGCCTCTTCGTTTCTGTCT	0.502													8	24					0	0	0.000274275	0	0
SCP2	6342	broad.mit.edu	37	1	53480614	53480614	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:53480614G>A	uc001cur.1	+	12	1255	c.1134G>A	c.(1132-1134)AAG>AAA	p.K378K	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_Silent_p.K297K|SCP2_uc010onp.1_Silent_p.K354K|SCP2_uc009vzi.1_Silent_p.K334K|SCP2_uc010onq.1_5'UTR|SCP2_uc001cut.1_5'UTR|SCP2_uc001cuu.1_5'UTR	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	378					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						AAGCCGGAAAGAGGCAAGTTC	0.522													18	62					0	0	0.00074312	0	0
SLC1A7	6512	broad.mit.edu	37	1	53555603	53555603	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:53555603G>A	uc001cuy.2	-	9	1398	c.1230C>T	c.(1228-1230)ATC>ATT	p.I410I	SLC1A7_uc001cux.2_Silent_p.I63I	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	410						integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	CAGTGGCTGTGATACTGCAGG	0.642													17	76					0	0	0.000422831	0	0
C1orf123	54987	broad.mit.edu	37	1	53684567	53684567	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:53684567G>A	uc001cvd.2	-	3	161	c.119C>T	c.(118-120)TCG>TTG	p.S40L	C1orf123_uc001cvc.2_5'Flank|C1orf123_uc001cve.2_Intron	NM_017887	NP_060357	Q9NWV4	CA123_HUMAN	hypothetical protein LOC54987	40										pancreas(2)	2						CCACTTGTCCGAAATCTCACC	0.488													37	138					0	0	0.00195071	0	0
MRPL37	51253	broad.mit.edu	37	1	54678204	54678204	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:54678204C>T	uc001cxa.3	+	5	940	c.863C>T	c.(862-864)CCC>CTC	p.P288L	MRPL37_uc009vzp.2_Missense_Mutation_p.P157L|MRPL37_uc001cxb.1_Missense_Mutation_p.P288L|MRPL37_uc001cxc.3_5'UTR|MRPL37_uc010oob.1_RNA	NM_016491	NP_057575	Q9BZE1	RM37_HUMAN	mitochondrial ribosomal protein L37 precursor	288					translation	mitochondrial ribosome	structural constituent of ribosome				0						TACCCCTATCCCCATACCCTG	0.512													62	225					0	0	0.000781405	0	0
ACOT11	26027	broad.mit.edu	37	1	55060346	55060346	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:55060346A>T	uc001cxm.1	+	6	671	c.589A>T	c.(589-591)AAC>TAC	p.N197Y	ACOT11_uc001cxj.1_Missense_Mutation_p.N75Y|ACOT11_uc001cxk.2_Missense_Mutation_p.N163Y|ACOT11_uc001cxl.1_Missense_Mutation_p.N197Y	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	197					fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						CCTCCTGGCCAACTGCGCCAT	0.667													15	69					0	0	0.00074312	0	0
PPAP2B	8613	broad.mit.edu	37	1	56977725	56977725	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:56977725G>A	uc001cyj.1	-	6	1234	c.733C>T	c.(733-735)CGC>TGC	p.R245C		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	245	Helical; (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						TCTGATACGCGAGACAGTCCC	0.572													20	58					0	0	0.00121646	0	0
PPAP2B	8613	broad.mit.edu	37	1	56990026	56990026	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:56990026G>A	uc001cyj.1	-	4	999	c.498C>T	c.(496-498)TTC>TTT	p.F166F		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	166	Lumenal (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						TGATCTGGCTGAAATCAGGGT	0.527													41	91					0	0	0.000680045	0	0
PRKAA2	5563	broad.mit.edu	37	1	57159464	57159464	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:57159464G>A	uc001cyk.3	+	5	573	c.502G>A	c.(502-504)GAA>AAA	p.E168K		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	168	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						GTCAGATGGTGAATTTCTGAG	0.318													77	173					0	0	0.000781405	0	0
C8A	731	broad.mit.edu	37	1	57351711	57351711	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:57351711G>A	uc001cyo.2	+	7	1099	c.967G>A	c.(967-969)GAT>AAT	p.D323N		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	323	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GGAGCTTCCAGATCAGTACAA	0.413													27	49					0	0	0.00106085	0	0
INADL	10207	broad.mit.edu	37	1	62340940	62340940	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:62340940C>T	uc001dab.2	+	21	2975	c.2861C>T	c.(2860-2862)TCC>TTC	p.S954F	INADL_uc009waf.1_Missense_Mutation_p.S954F|INADL_uc001daa.2_Missense_Mutation_p.S954F|INADL_uc001dad.3_Missense_Mutation_p.S651F|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	954					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GTCATGGAGTCCCTACCATCT	0.343													24	66					0	0	0.000878237	0	0
KANK4	163782	broad.mit.edu	37	1	62732423	62732423	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:62732423G>A	uc001dah.3	-	6	2677	c.2300C>T	c.(2299-2301)ACC>ATC	p.T767I	KANK4_uc001dai.3_Missense_Mutation_p.T139I|KANK4_uc001dag.3_Missense_Mutation_p.T123I	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	767										ovary(3)|skin(2)|lung(1)	6						GTCTGTGGTGGTCCCAGTTTC	0.403													51	149					0	0	0.000781405	0	0
DOCK7	85440	broad.mit.edu	37	1	63044523	63044524	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:63044523_63044524AG>CA	uc001daq.2	-	17	2019_2020	c.1985_1986CT>TG	c.(1984-1986)CCT>CTG	p.P662L	DOCK7_uc001dan.2_Missense_Mutation_p.P554L|DOCK7_uc001dao.2_Missense_Mutation_p.P554L|DOCK7_uc001dap.2_Missense_Mutation_p.P662L	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	662	DHR-1.				activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						GTGTTTCAAGAGGAGTATTTTG	0.307													33	164					0	0	6.4e-05	0	0
ANGPTL3	27329	broad.mit.edu	37	1	63063322	63063322	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:63063322C>A	uc001das.1	+	1	136	c.85C>A	c.(85-87)CTA>ATA	p.L29I	DOCK7_uc001dan.2_Intron|DOCK7_uc001dao.2_Intron|DOCK7_uc001dap.2_Intron|DOCK7_uc001daq.2_Intron|DOCK7_uc009wah.1_Intron	NM_014495	NP_055310	Q9Y5C1	ANGL3_HUMAN	angiopoietin-like 3 precursor	29					acylglycerol homeostasis|artery morphogenesis|cell-matrix adhesion|cholesterol homeostasis|cholesterol metabolic process|fatty acid metabolic process|glycerol metabolic process|integrin-mediated signaling pathway|lipid storage|negative regulation of lipoprotein lipase activity|negative regulation of phospholipase activity|phospholipid catabolic process|phospholipid homeostasis|positive regulation of angiogenesis|positive regulation of cell migration|positive regulation of lipid catabolic process|triglyceride homeostasis	extracellular space	cell surface binding|growth factor activity|integrin binding|phospholipase inhibitor activity				0						ATTTGATTCTCTATCTCCAGA	0.343													15	22					1.15088e-07	4.06888e-07	0.000422831	1	0
ALG6	29929	broad.mit.edu	37	1	63862189	63862189	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:63862189G>T	uc010oow.1	+	3	393	c.88G>T	c.(88-90)GGT>TGT	p.G30C	ALG6_uc001daz.2_RNA|ALG6_uc009waj.2_RNA	NM_013339	NP_037471	Q9Y672	ALG6_HUMAN	dolichyl pyrophosphate Man9GlcNAc2	30					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity				0						CTTAGGTGCTGGTAAACCGCC	0.299													9	143					2.17888e-05	7.68496e-05	0.000442599	1	0
ROR1	4919	broad.mit.edu	37	1	64605890	64605890	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:64605890G>A	uc001dbj.2	+	6	1108	c.709G>A	c.(709-711)GAA>AAA	p.E237K	ROR1_uc001dbi.3_Missense_Mutation_p.E237K|uc001dbl.2_Intron	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	237	FZ.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						GTACTGCGATGAAACTTCATC	0.468													20	73					0	0	0.00188189	0	0
LRRC7	57554	broad.mit.edu	37	1	70494040	70494040	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:70494040G>A	uc001dep.2	+	16	1897	c.1867G>A	c.(1867-1869)GAG>AAG	p.E623K	LRRC7_uc009wbg.2_Intron	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	623						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGCCCCAAAGGAGATTACAGT	0.393													6	24					0	0	0.000157383	0	0
C1orf173	127254	broad.mit.edu	37	1	75037778	75037778	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:75037778C>T	uc001dgg.2	-	14	3835	c.3616G>A	c.(3616-3618)GAA>AAA	p.E1206K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1206	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CGGTGCCCTTCCTTCAGGGCC	0.592													29	103					0	0	0.00283554	0	0
NEXN	91624	broad.mit.edu	37	1	78392407	78392407	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:78392407G>A	uc001dic.3	+	8	991	c.694G>A	c.(694-696)GAA>AAA	p.E232K	NEXN_uc001dia.3_Missense_Mutation_p.E218K|NEXN_uc009wcb.1_Missense_Mutation_p.E154K|NEXN_uc001dib.3_Missense_Mutation_p.E168K|NEXN_uc001did.1_Missense_Mutation_p.E142K|NEXN_uc001dif.1_Missense_Mutation_p.E124K	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	232	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		TTAGGATGATGAAATAGAAAG	0.338													46	172					0	0	0.000781405	0	0
PTGFR	5737	broad.mit.edu	37	1	78959146	78959146	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:78959146G>A	uc001din.2	+	2	984	c.718G>A	c.(718-720)GGC>AGC	p.G240S	PTGFR_uc001dim.2_Missense_Mutation_p.G240S	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	240	Cytoplasmic (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	GCACAGACAAGGCAGATCTCA	0.413													44	90					0	0	0.000781405	0	0
LPHN2	23266	broad.mit.edu	37	1	82416777	82416777	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:82416777C>T	uc001dit.3	+	8	1749	c.1568C>T	c.(1567-1569)TCA>TTA	p.S523L	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.S523L|LPHN2_uc001div.2_Missense_Mutation_p.S523L|LPHN2_uc009wcd.2_Missense_Mutation_p.S523L|LPHN2_uc001diw.2_Missense_Mutation_p.S94L	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	523	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AACTGTACCTCACACTGGGTG	0.418													16	56					0	0	0.000422831	0	0
CLCA1	1179	broad.mit.edu	37	1	86959213	86959213	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:86959213G>A	uc001dlt.2	+	10	1740	c.1611G>A	c.(1609-1611)CAG>CAA	p.Q537Q	CLCA1_uc001dls.1_Silent_p.Q476Q	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	537					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		CCAGTGGACAGAAGCAAGGTG	0.478													13	55					0	0	0.000308642	0	0
PKN2	5586	broad.mit.edu	37	1	89279410	89279410	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:89279410G>A	uc001dmn.2	+	16	2615	c.2273G>A	c.(2272-2274)AGA>AAA	p.R758K	PKN2_uc010osp.1_Missense_Mutation_p.R742K|PKN2_uc010osq.1_Missense_Mutation_p.R601K|PKN2_uc009wcv.2_Missense_Mutation_p.R710K|PKN2_uc010osr.1_Missense_Mutation_p.R423K	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	758	Protein kinase.				signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		TCTGAACCAAGAGCTGTGTGA	0.378													68	149					0	0	0.000781405	0	0
GBP5	115362	broad.mit.edu	37	1	89730507	89730507	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:89730507C>T	uc001dnc.2	-	8	1548	c.1011G>A	c.(1009-1011)ATG>ATA	p.M337I	GBP5_uc001dnd.2_Missense_Mutation_p.M337I|GBP5_uc001dne.1_Missense_Mutation_p.M337I	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	337						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		CTTTCTGGCCCATTTGCTGGT	0.542													23	60					0	0	0.00047179	0	0
CCDC18	343099	broad.mit.edu	37	1	93720073	93720073	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:93720073C>T	uc001dpq.2	+	24	3766	c.3598C>T	c.(3598-3600)CGA>TGA	p.R1200*	CCDC18_uc001dpr.1_5'UTR	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	1081	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		AGAACAGCTTCGAGAAAAAGA	0.284													45	55					0	0	0.0025221	0	0
F3	2152	broad.mit.edu	37	1	95007189	95007189	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:95007189C>T	uc001dqr.2	-	1	183	c.4G>A	c.(4-6)GAG>AAG	p.E2K	F3_uc001dqp.2_5'Flank|F3_uc001dqq.2_5'Flank|F3_uc001dqs.2_Missense_Mutation_p.E2K|F3_uc001dqt.2_RNA	NM_001993	NP_001984	P13726	TF_HUMAN	coagulation factor III precursor	2					activation of caspase activity|activation of plasma proteins involved in acute inflammatory response|anti-apoptosis|blood coagulation, extrinsic pathway|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of protein kinase B signaling cascade	extracellular matrix|extracellular space|integral to membrane	cell surface binding|phospholipid binding|protease binding			central_nervous_system(1)	1		all_lung(203;0.00106)|Lung NSC(277;0.00475)		all cancers(265;0.0232)|Epithelial(280;0.121)	Coagulation factor VIIa(DB00036)	GCAGGGGTCTCCATGTCTACC	0.741													11	20					0	0	0.000308642	0	0
RWDD3	25950	broad.mit.edu	37	1	95712368	95712368	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:95712368T>G	uc009wdu.2	+	4	822	c.746T>G	c.(745-747)TTT>TGT	p.F249C	RWDD3_uc001drf.3_3'UTR|RWDD3_uc001drh.3_3'UTR|RWDD3_uc009wdv.2_RNA|RWDD3_uc001drg.3_RNA|RWDD3_uc001dri.3_3'UTR	NM_015485	NP_056300	Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3 isoform a	249						cytoplasm|nucleus	protein binding			ovary(1)	1		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		CAAAAGGAATTTGAAACTGCA	0.338													23	18					0	0	0.000720815	0	0
DPH5	51611	broad.mit.edu	37	1	101479281	101479281	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:101479281G>A	uc001dts.2	-	4	501	c.354C>T	c.(352-354)GGC>GGT	p.G118G	DPH5_uc001dtr.2_Silent_p.G118G|DPH5_uc001dtq.2_Intron|DPH5_uc001dtt.2_Silent_p.G118G|DPH5_uc001dtu.2_RNA|DPH5_uc001dtv.2_RNA|DPH5_uc001dtw.2_RNA|DPH5_uc001dtx.2_Silent_p.G118G|DPH5_uc001dty.2_Intron|DPH5_uc001dtz.2_RNA	NM_015958	NP_057042	Q9H2P9	DPH5_HUMAN	diphthine synthase isoform a	118					peptidyl-diphthamide biosynthetic process from peptidyl-histidine		diphthine synthase activity				0		all_epithelial(167;3.1e-06)|all_lung(203;0.000414)|Lung NSC(277;0.000946)		Epithelial(280;0.0385)|all cancers(265;0.043)|COAD - Colon adenocarcinoma(174;0.151)|Colorectal(144;0.173)|Lung(183;0.198)		AACCACAGCAGCCTACAGCAT	0.343													72	78					0	0	0.000781405	0	0
OLFM3	118427	broad.mit.edu	37	1	102290780	102290780	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:102290780C>T	uc001duf.2	-	4	525	c.454G>A	c.(454-456)GAG>AAG	p.E152K	OLFM3_uc001dug.2_Missense_Mutation_p.E132K|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Missense_Mutation_p.E57K|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	152	Potential.					extracellular region		p.E132Q(1)		ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		GGCAGGAGCTCGTCCATTTTC	0.413													11	21					0	0	0.00244969	0	0
COL11A1	1301	broad.mit.edu	37	1	103381206	103381206	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:103381206G>A	uc001dul.2	-	50	4115	c.3797C>T	c.(3796-3798)CCT>CTT	p.P1266L	COL11A1_uc001duk.2_Missense_Mutation_p.P462L|COL11A1_uc001dum.2_Missense_Mutation_p.P1278L|COL11A1_uc001dun.2_Missense_Mutation_p.P1227L|COL11A1_uc009weh.2_Missense_Mutation_p.P1150L	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1266	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TGCTTCCCCAGGAGGCCCTGG	0.363													56	77					0	0	0.000781405	0	0
KIAA1324	57535	broad.mit.edu	37	1	109745579	109745579	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:109745579G>A	uc001dwq.2	+	23	3123	c.2987G>A	c.(2986-2988)GGA>GAA	p.G996E	KIAA1324_uc009wey.2_Missense_Mutation_p.G909E|KIAA1324_uc010ovg.1_3'UTR|KIAA1324_uc001dwr.2_Missense_Mutation_p.G646E	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	996	Cytoplasmic (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		ACTCCTGATGGATTTGACTCA	0.542													120	194					0	0	0.000781405	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114454061	114454061	+	Missense_Mutation	SNP	C	T	T	rs145569979	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:114454061C>T	uc001eeg.2	+	4	1018	c.847C>T	c.(847-849)CGT>TGT	p.R283C	DCLRE1B_uc001eeh.2_Missense_Mutation_p.R157C|DCLRE1B_uc001eei.2_Missense_Mutation_p.R157C	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	283					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTCCGAGCTTCGTGCCTTTGT	0.562								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					29	54					0	0	0.0024448	0	0
AMPD1	270	broad.mit.edu	37	1	115220613	115220613	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:115220613G>A	uc001efe.1	-	9	1226	c.1142C>T	c.(1141-1143)CCT>CTT	p.P381L	AMPD1_uc001eff.1_Missense_Mutation_p.P377L	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	381					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TGCTCCTACAGGATTATATTT	0.428													24	40					0	0	0.00278032	0	0
ATP1A1	476	broad.mit.edu	37	1	116935540	116935540	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:116935540C>T	uc001ege.2	+	11	1736	c.1397C>T	c.(1396-1398)TCC>TTC	p.S466F	ATP1A1_uc010owv.1_Missense_Mutation_p.S435F|ATP1A1_uc010oww.1_Missense_Mutation_p.S466F|ATP1A1_uc010owx.1_Missense_Mutation_p.S435F|C1orf203_uc009whb.2_RNA	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	466	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	TGCTGTGGTTCCGTGAAGGAG	0.493													30	71					0	0	0.00058488	0	0
IGSF3	3321	broad.mit.edu	37	1	117122381	117122381	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:117122381G>A	uc001egr.1	-	10	3672	c.2967C>T	c.(2965-2967)GCC>GCT	p.A989A	IGSF3_uc001egq.1_Silent_p.A1009A	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	989	Ig-like C2-type 8.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		GGGAATACCAGGCCACAGCGA	0.478													9	44					0	0	0.000978159	0	0
IGSF3	3321	broad.mit.edu	37	1	117122404	117122404	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:117122404G>T	uc001egr.1	-	10	3649	c.2944C>A	c.(2944-2946)CAG>AAG	p.Q982K	IGSF3_uc001egq.1_Missense_Mutation_p.Q1002K	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	982	Ig-like C2-type 8.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		CGGGAGTCCTGGCTGGAGCGG	0.552													9	36					5.16669e-11	1.83104e-10	0.000978159	1	0
PTGFRN	5738	broad.mit.edu	37	1	117509892	117509892	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:117509892C>T	uc001egv.1	+	6	2136	c.1999C>T	c.(1999-2001)CTT>TTT	p.L667F		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	667	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		CAGGGGCAGCCTTTGGCGAGA	0.542													12	44					0	0	0.00185496	0	0
CD101	9398	broad.mit.edu	37	1	117559809	117559809	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:117559809C>T	uc010oxb.1	+	5	1384	c.1326C>T	c.(1324-1326)CCC>CCT	p.P442P	CD101_uc009whd.2_Silent_p.P442P|CD101_uc010oxc.1_Silent_p.P442P|CD101_uc010oxd.1_Silent_p.P380P	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	442	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CTGAAAGTCCCCTGTCTGTGA	0.567													7	40					0	0	0.00198382	0	0
PHGDH	26227	broad.mit.edu	37	1	120277283	120277283	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:120277283C>T	uc001ehz.2	+	6	764	c.537C>T	c.(535-537)TCC>TCT	p.S179S	PHGDH_uc009whl.2_Silent_p.S81S|PHGDH_uc009whm.2_Silent_p.S77S|PHGDH_uc001eia.2_Silent_p.S179S|PHGDH_uc009whn.2_Silent_p.S179S|PHGDH_uc001eib.2_Silent_p.S145S	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	179					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CCATCATTTCCCCAGAGGTCT	0.483													181	383					0	0	0.000781405	0	0
REG4	83998	broad.mit.edu	37	1	120337248	120337248	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:120337248C>T	uc001eig.2	-	7	910	c.470G>A	c.(469-471)CGA>CAA	p.R157Q	REG4_uc001eif.2_Missense_Mutation_p.R157Q	NM_001159352	NP_001152824	Q9BYZ8	REG4_HUMAN	regenerating islet-derived family, member 4	157						extracellular region	sugar binding	p.R157*(1)		ovary(1)	1	all_cancers(5;4.81e-10)|all_epithelial(5;7.98e-11)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;8.1e-07)|Lung NSC(69;5.89e-06)|all_epithelial(167;0.000959)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0588)		GCTCTATGGTCGGTACTTGCA	0.428													191	438					0	0	0.000781405	0	0
NBPF7	343505	broad.mit.edu	37	1	120385153	120385153	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:120385153C>T	uc010oxk.1	-	2	862	c.241G>A	c.(241-243)GAG>AAG	p.E81K		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	81						cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		TTGCACTCCTCATACTCTGAG	0.542													97	198					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120510117	120510118	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:120510117_120510118GG>TT	uc001eik.2	-	8	1647_1648	c.1391_1392CC>AA	c.(1390-1392)CCC>CAA	p.P464Q	NOTCH2_uc001eil.2_Missense_Mutation_p.P464Q|NOTCH2_uc001eim.3_Missense_Mutation_p.P381Q	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	464	Extracellular (Potential).|EGF-like 12; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CATTCTGGCAGGGGTCTGAATG	0.515			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				13	460					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144918898	144918898	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:144918898G>A	uc001elw.3	-	10	1579	c.1288C>T	c.(1288-1290)CGA>TGA	p.R430*	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Nonsense_Mutation_p.R496*|PDE4DIP_uc001emc.1_Nonsense_Mutation_p.R430*|PDE4DIP_uc001emd.1_Nonsense_Mutation_p.R430*|PDE4DIP_uc001emb.1_Nonsense_Mutation_p.R593*|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Nonsense_Mutation_p.R217*	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	430	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TCCTGGGTTCGAATCTCATTG	0.438			T	PDGFRB	MPD								74	749					0	0	0.000781405	0	0
NBPF10	100132406	broad.mit.edu	37	1	145299840	145299840	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:145299840C>T	uc001end.3	+	6	924	c.889C>T	c.(889-891)CCC>TCC	p.P297S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.P297S|NBPF10_uc010oyi.1_5'Flank|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	297											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GAAATTGCGCCCCCAGCTGGC	0.483													16	412					0	0	0.001512	0	0
ITGA10	8515	broad.mit.edu	37	1	145533075	145533075	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:145533075G>A	uc001eoa.2	+	11	1246	c.1170G>A	c.(1168-1170)ATG>ATA	p.M390I	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Missense_Mutation_p.M259I|ITGA10_uc009wiw.2_Missense_Mutation_p.M247I|ITGA10_uc010oyw.1_Missense_Mutation_p.M335I	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	390	Extracellular (Potential).|FG-GAP 3.				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TTTTTGGGATGGTGGGGGCCT	0.532													20	52					0	0	0.00229938	0	0
RPRD2	23248	broad.mit.edu	37	1	150429903	150429903	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:150429903C>T	uc009wlr.2	+	8	1211	c.1010C>T	c.(1009-1011)CCT>CTT	p.P337L	RPRD2_uc010pcc.1_Missense_Mutation_p.P311L|RPRD2_uc001eup.3_Missense_Mutation_p.P311L	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	337							protein binding			ovary(1)	1						TCTGAGTCTCCTTTTCAGGGA	0.502													53	140					0	0	0.000781405	0	0
HORMAD1	84072	broad.mit.edu	37	1	150689631	150689631	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:150689631C>T	uc001evk.1	-	3	267	c.161G>A	c.(160-162)GGA>GAA	p.G54E	HORMAD1_uc001evl.1_Missense_Mutation_p.G54E|HORMAD1_uc001evm.1_Nonsense_Mutation_p.W4*	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	54	HORMA.				blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			ATATCTTGTTCCATAAGCGCA	0.328													19	160					0	0	0.00278032	0	0
PRUNE	58497	broad.mit.edu	37	1	151006643	151006643	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:151006643C>T	uc001ewh.1	+	8	1431	c.1295C>T	c.(1294-1296)GCC>GTC	p.A432V	PRUNE_uc001ewi.1_Missense_Mutation_p.A250V|PRUNE_uc010pco.1_Missense_Mutation_p.A200V|PRUNE_uc001ewj.1_Missense_Mutation_p.A147V|PRUNE_uc001ewk.1_Missense_Mutation_p.A197V|BNIPL_uc009wmi.2_5'Flank|BNIPL_uc001ewl.2_5'Flank	NM_021222	NP_067045	Q86TP1	PRUNE_HUMAN	prune	432						cytoplasm|focal adhesion|nucleus	inorganic diphosphatase activity|manganese ion binding|protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TCTGCTGAGGCCGTCTTCGAG	0.577													28	140					0	0	0.00283554	0	0
SEMA6C	10500	broad.mit.edu	37	1	151110496	151110496	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:151110496G>A	uc001ewu.2	-	9	933	c.633C>T	c.(631-633)CTC>CTT	p.L211L	SEMA6C_uc001ewv.2_Silent_p.L211L|SEMA6C_uc001eww.2_Intron|SEMA6C_uc010pcq.1_Silent_p.L211L|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	211	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TGGCGGAGCGGAGTGGGGGCT	0.627													22	61					0	0	0.00106085	0	0
TNFAIP8L2	79626	broad.mit.edu	37	1	151131671	151131671	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:151131671G>A	uc001ewx.2	+	2	624	c.498G>A	c.(496-498)CAG>CAA	p.Q166Q		NM_024575	NP_078851	Q6P589	TP8L2_HUMAN	tumor necrosis factor, alpha-induced protein	166					innate immune response						0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			ACTTCACTCAGCACCTTGGCA	0.562													16	37					0	0	0.00152264	0	0
CGN	57530	broad.mit.edu	37	1	151491794	151491794	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:151491794C>T	uc009wmw.2	+	2	943	c.799C>T	c.(799-801)CGT>TGT	p.R267C		NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	261	Interacts with ZO-2.|Head.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			TAGCCGTTCTCGTCAGACTCA	0.567													6	48					0	0	0.00116845	0	0
RPTN	126638	broad.mit.edu	37	1	152128866	152128866	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152128866C>T	uc001ezs.1	-	3	774	c.709G>A	c.(709-711)GAT>AAT	p.D237N		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	237	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TAATGAGAATCCTGAATTGGT	0.413													18	101					0	0	0.00074312	0	0
HRNR	388697	broad.mit.edu	37	1	152188457	152188457	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152188457C>T	uc001ezt.1	-	3	5724	c.5648G>A	c.(5647-5649)GGT>GAT	p.G1883D		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1883	20.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGAGTGTAACCAGAGGACTG	0.552													34	809					0	0	0.00127121	0	0
HRNR	388697	broad.mit.edu	37	1	152193617	152193617	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152193617C>T	uc001ezt.1	-	3	564	c.488G>A	c.(487-489)AGA>AAA	p.R163K		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	163	1.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGAAAAGTCTCTTTGAAAACT	0.478													30	61					0	0	0.00127121	0	0
FLG	2312	broad.mit.edu	37	1	152276933	152276933	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152276933G>A	uc001ezu.1	-	3	10465	c.10429C>T	c.(10429-10431)CGT>TGT	p.R3477C		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3477	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACTGCCCACGGGAGGCATCA	0.557									Ichthyosis				26	174					0	0	0.0024448	0	0
FLG	2312	broad.mit.edu	37	1	152277644	152277644	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152277644G>A	uc001ezu.1	-	3	9754	c.9718C>T	c.(9718-9720)CGT>TGT	p.R3240C		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3240	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACAGATCCACGATGGTTTCTG	0.592									Ichthyosis				50	111					0	0	0.000781405	0	0
FLG	2312	broad.mit.edu	37	1	152281024	152281024	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152281024C>T	uc001ezu.1	-	3	6374	c.6338G>A	c.(6337-6339)GGA>GAA	p.G2113E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2113	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTTGTCTTCCTCCAGTGCT	0.567									Ichthyosis				28	129					0	0	0.00127121	0	0
FLG	2312	broad.mit.edu	37	1	152281751	152281751	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152281751C>T	uc001ezu.1	-	3	5647	c.5611G>A	c.(5611-5613)GAG>AAG	p.E1871K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1871	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATTGTTTCTCATTACGTGTT	0.577									Ichthyosis				93	187					0	0	0.000781405	0	0
FLG2	388698	broad.mit.edu	37	1	152324960	152324960	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152324960C>T	uc001ezw.3	-	3	5375	c.5302G>A	c.(5302-5304)GGA>AGA	p.G1768R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1768	Filaggrin 7.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTATAGTTCCATGTCTCTCA	0.502													46	73					0	0	0.000680045	0	0
LCE2C	353140	broad.mit.edu	37	1	152648591	152648591	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152648591C>T	uc001fah.2	+	2	155	c.100C>T	c.(100-102)CCA>TCA	p.P34S		NM_178429	NP_848516	Q5TA81	LCE2C_HUMAN	late cornified envelope 2C	34	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			caaATGCCCACCACAGTGCCC	0.448													17	87					0	0	0.00074312	0	0
IVL	3713	broad.mit.edu	37	1	152883960	152883960	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152883960G>A	uc001fau.2	+	2	1733	c.1687G>A	c.(1687-1689)GGA>AGA	p.G563R		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	563					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCCCACAAAGGGAGAAGTATT	0.448													13	47					0	0	0.000422831	0	0
NUP210L	91181	broad.mit.edu	37	1	153999992	153999992	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:153999992G>A	uc001fdw.2	-	29	4009	c.3937C>T	c.(3937-3939)CAT>TAT	p.H1313Y	NUP210L_uc009woq.2_Missense_Mutation_p.H222Y|NUP210L_uc010peh.1_Missense_Mutation_p.H1313Y	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1313						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CTGTTGGTATGGAGTTTGAGC	0.373													28	74					0	0	0.001512	0	0
PYGO2	90780	broad.mit.edu	37	1	154932030	154932030	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:154932030G>A	uc001fft.2	-	3	652	c.446C>T	c.(445-447)CCC>CTC	p.P149L		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	149	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			AGGACCCTGGGGGGGCATGTT	0.627													24	82					0	0	0.000720815	0	0
GON4L	54856	broad.mit.edu	37	1	155723072	155723073	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:155723072_155723073GG>AA	uc001flz.2	-	29	5861_5862	c.5764_5765CC>TT	c.(5764-5766)CCA>TTA	p.P1922L	GON4L_uc001flx.1_5'Flank|GON4L_uc009wrg.1_Intron|GON4L_uc001fly.1_Missense_Mutation_p.P1922L|GON4L_uc009wrh.1_Missense_Mutation_p.P1922L|GON4L_uc001fma.1_Missense_Mutation_p.P1922L	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1922					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCGCTCCTCTGGGGCTTCCTCT	0.604													20	59					0	0	6.4e-05	0	0
GON4L	54856	broad.mit.edu	37	1	155792092	155792092	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:155792092G>A	uc001flz.2	-	4	970	c.873C>T	c.(871-873)GTC>GTT	p.V291V	GON4L_uc001fly.1_Silent_p.V291V|GON4L_uc009wrh.1_Silent_p.V291V|GON4L_uc001fma.1_Silent_p.V291V|GON4L_uc001fmc.2_Silent_p.V291V|GON4L_uc001fmd.3_Silent_p.V291V|GON4L_uc009wri.2_5'UTR|GON4L_uc001fme.2_Silent_p.V119V|GON4L_uc001fmf.2_5'Flank	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	291					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGATGTTTCGGACATTGACTG	0.433													26	128					0	0	0.001512	0	0
SEMA4A	64218	broad.mit.edu	37	1	156146734	156146734	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:156146734C>T	uc001fnl.2	+	15	2336	c.2232C>T	c.(2230-2232)ACC>ACT	p.T744T	SEMA4A_uc009wrq.2_Silent_p.T744T|SEMA4A_uc001fnm.2_Silent_p.T744T|SEMA4A_uc001fnn.2_Silent_p.T612T|SEMA4A_uc001fno.2_Silent_p.T744T	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	744	Cytoplasmic (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					AATGCAGGACCTCTGCCAGTG	0.622													9	34					0	0	0.000978159	0	0
SMG5	23381	broad.mit.edu	37	1	156228802	156228802	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:156228802G>A	uc001foc.3	-	16	2585	c.2436C>T	c.(2434-2436)TTC>TTT	p.F812F	SMG5_uc009wrv.2_Silent_p.F297F	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	812	Potential.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					TCACCATTCGGAACTGTGCCT	0.607													11	30					0	0	0.00244969	0	0
C1orf85	112770	broad.mit.edu	37	1	156264212	156264212	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:156264212C>G	uc001foh.2	-	3	536	c.523G>C	c.(523-525)GGC>CGC	p.G175R	C1orf85_uc001fof.3_5'Flank|C1orf85_uc001fog.1_Intron|C1orf85_uc001foi.2_Missense_Mutation_p.G175R|C1orf85_uc009wrx.2_Intron|C1orf85_uc001foj.2_Missense_Mutation_p.G89R	NM_144580	NP_653181	Q8WWB7	NCUG1_HUMAN	kidney predominant protein NCU-G1 precursor	175	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter	cytosol|integral to membrane|lysosomal membrane|nucleus	ligand-dependent nuclear receptor activity|protein binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2	Hepatocellular(266;0.158)					ATGGGGTGGCCTTGAAATGTG	0.507													10	64					0	0	0.000673444	0	0
BCAN	63827	broad.mit.edu	37	1	156622570	156622571	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:156622570_156622571CC>TT	uc001fpp.2	+	8	2164_2165	c.1828_1829CC>TT	c.(1828-1830)CCC>TTC	p.P610F	BCAN_uc001fpo.2_Missense_Mutation_p.P610F	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	610					cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCTGGAGGCCCCCTCTGAAGAT	0.663													9	27					0	0	6.4e-05	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156955917	156955917	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:156955917G>A	uc001fqo.2	-	2	1121	c.81C>T	c.(79-81)TCC>TCT	p.S27S	ARHGEF11_uc001fqn.2_Silent_p.S27S	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	27					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGTGGGAAGGGGACTTGCGCT	0.458													28	101					0	0	0.00209593	0	0
KIRREL	55243	broad.mit.edu	37	1	158064487	158064487	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:158064487C>T	uc001frn.3	+	15	2255	c.1851C>T	c.(1849-1851)TCC>TCT	p.S617S	KIRREL_uc010pib.1_Silent_p.S517S|KIRREL_uc009wsq.2_Silent_p.S453S|KIRREL_uc001fro.3_Silent_p.S431S|uc001frp.2_5'Flank	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	617	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					GCCCGTCTTCCAGGGCAGTGC	0.637													16	37					0	0	0.000308642	0	0
CD1B	910	broad.mit.edu	37	1	158298751	158298751	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:158298751G>A	uc001frx.2	-	5	1048	c.940C>T	c.(940-942)CTC>TTC	p.L314F	CD1B_uc001frw.2_Missense_Mutation_p.L152F	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	314	Helical; (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					AGCAAAAGGAGCAAGGAAGGC	0.423													25	65					0	0	0.000878237	0	0
OR10R2	343406	broad.mit.edu	37	1	158449913	158449913	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:158449913C>T	uc010pik.1	+	1	246	c.246C>T	c.(244-246)TTC>TTT	p.F82F	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	82	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					TGTACTTCTTCCTTGGCATTC	0.413													22	101					0	0	0.00047179	0	0
OR10R2	343406	broad.mit.edu	37	1	158449955	158449955	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:158449955C>T	uc010pik.1	+	1	288	c.288C>T	c.(286-288)GTC>GTT	p.V96V	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					ACACCTTTGTCATTCTACCCA	0.428													26	118					0	0	0.000878237	0	0
SPTA1	6708	broad.mit.edu	37	1	158615343	158615343	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:158615343G>A	uc001fst.1	-	28	4137	c.3938C>T	c.(3937-3939)TCA>TTA	p.S1313L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1313	Spectrin 13.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTCCTGTGATGATACCATGCC	0.448													24	112					0	0	0.00178596	0	0
SPTA1	6708	broad.mit.edu	37	1	158644424	158644424	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:158644424C>T	uc001fst.1	-	9	1353	c.1154G>A	c.(1153-1155)TGG>TAG	p.W385*		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	385	Spectrin 5.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTCGTTCATCCAGCCTGAGAG	0.468													34	121					0	0	0.00111076	0	0
OR6K2	81448	broad.mit.edu	37	1	158670041	158670041	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:158670041G>A	uc001fsu.1	-	1	402	c.402C>T	c.(400-402)ATC>ATT	p.I134I		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TGGGGGTCATGATAGAGGGAT	0.473													12	56					0	0	0.000308642	0	0
OR6K3	391114	broad.mit.edu	37	1	158687584	158687584	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:158687584C>T	uc010pip.1	-	1	370	c.370G>A	c.(370-372)GAA>AAA	p.E124K		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	124	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TCTGAGTTTTCAAGTGAGTGG	0.498													21	102					0	0	0.00278032	0	0
DARC	2532	broad.mit.edu	37	1	159176211	159176211	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:159176211C>T	uc001fto.2	+	2	1222	c.982C>T	c.(982-984)CAT>TAT	p.H328Y	DARC_uc001ftp.3_Missense_Mutation_p.H330Y	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	328	Cytoplasmic (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					ATGGTCTTCTCATCTGGACAC	0.537													109	260					0	0	0.000781405	0	0
FCER1A	2205	broad.mit.edu	37	1	159272205	159272205	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:159272205C>T	uc001ftq.2	+	2	150	c.51C>T	c.(49-51)TTC>TTT	p.F17F		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	17						integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	CCTTACTGTTCTTCGGTAAGT	0.498													24	68					0	0	0.000720815	0	0
FCER1A	2205	broad.mit.edu	37	1	159273877	159273877	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:159273877A>T	uc001ftq.2	+	4	335	c.236A>T	c.(235-237)AAT>ATT	p.N79I		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	79	Extracellular (Potential).|Ig-like 1.					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	TCAAGTTTGAATATTGTGAAT	0.388													19	47					0	0	0.00188189	0	0
OR10J1	26476	broad.mit.edu	37	1	159410066	159410066	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:159410066C>T	uc010piv.1	+	1	518	c.518C>T	c.(517-519)TCT>TTT	p.S173F	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	173	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					CAAGTGACATCTGTATTCAGG	0.493													29	54					0	0	0.00106085	0	0
OR10J5	127385	broad.mit.edu	37	1	159505126	159505126	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:159505126G>A	uc010piw.1	-	1	672	c.672C>T	c.(670-672)ATC>ATT	p.I224I		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					CAATTTGAAGGATGGAAGAGA	0.453													7	40					0	0	0.000274275	0	0
IGSF9	57549	broad.mit.edu	37	1	159901688	159901688	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:159901688C>T	uc001fur.2	-	11	1474	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	IGSF9_uc001fuq.2_Missense_Mutation_p.E410K|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	426	Ig-like 5.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			AAATATTCTTCCTTGGGCCGC	0.577													13	68					0	0	0.00244969	0	0
SLAMF9	89886	broad.mit.edu	37	1	159922179	159922179	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:159922179G>A	uc001fus.2	-	3	654	c.537C>T	c.(535-537)TTC>TTT	p.F179F	SLAMF9_uc009wtd.2_Intron|SLAMF9_uc001fut.2_Intron	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	179	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGCCTTCATGGAATGTATAAG	0.587													11	75					0	0	0.00185496	0	0
ATP1A2	477	broad.mit.edu	37	1	160105705	160105705	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:160105705C>T	uc001fvc.2	+	17	2493	c.2361C>T	c.(2359-2361)TTC>TTT	p.F787F	ATP1A2_uc001fvb.2_Silent_p.F787F|ATP1A2_uc001fvd.2_Silent_p.F523F	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	787	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TCACCCCCTTCCTGCTGTTCA	0.557													17	44					0	0	0.00074312	0	0
ATP1A4	480	broad.mit.edu	37	1	160143373	160143373	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:160143373G>A	uc001fve.3	+	13	2336	c.1857G>A	c.(1855-1857)GTG>GTA	p.V619V	ATP1A4_uc001fvf.3_RNA|ATP1A4_uc001fvg.2_Silent_p.V122V	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	619	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CAACCCAGGTGATCATGGTAA	0.517													30	75					0	0	0.00283554	0	0
SLAMF6	114836	broad.mit.edu	37	1	160466008	160466008	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:160466008G>A	uc001fwe.1	-	2	285	c.225C>T	c.(223-225)ATC>ATT	p.I75I	SLAMF6_uc001fwd.1_Silent_p.I75I|SLAMF6_uc010pjh.1_Silent_p.I26I|SLAMF6_uc010pji.1_Intron|SLAMF6_uc010pjj.1_Intron|SLAMF6_uc009wtm.1_Silent_p.I26I	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	75	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			TAGTCACGTGGATTTCTGGAC	0.468													23	59					0	0	0.00229938	0	0
SDHC	6391	broad.mit.edu	37	1	161298251	161298251	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:161298251C>T	uc001gag.2	+	3	173	c.143C>T	c.(142-144)TCA>TTA	p.S48L	SDHC_uc001gai.2_Missense_Mutation_p.S48L|SDHC_uc001gaj.2_Intron|SDHC_uc001gak.2_Intron|SDHC_uc001gah.2_Intron	NM_003001	NP_002992	Q99643	C560_HUMAN	succinate dehydrogenase complex, subunit C	48	Mitochondrial matrix (By similarity).				respiratory electron transport chain|transport|tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain complex II|plasma membrane succinate dehydrogenase complex	electron carrier activity|heme binding|succinate dehydrogenase activity				0	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Succinic acid(DB00139)	AATATAGGTTCAAACCGTCCT	0.428			Mis|N|F			paraganglioma|pheochromocytoma			Familial_Paragangliomas|Carney-Stratakis_syndrome				14	102					0	0	0.000422831	0	0
FCGR2A	2212	broad.mit.edu	37	1	161487906	161487906	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:161487906C>T	uc001gan.2	+	7	975	c.922C>T	c.(922-924)CCT>TCT	p.P308S	FCGR2A_uc001gam.2_Missense_Mutation_p.P307S|FCGR2A_uc001gao.2_RNA	NM_001136219	NP_001129691	P12318	FCG2A_HUMAN	Fc fragment of IgG, low affinity IIa, receptor	308	Cytoplasmic (Potential).					integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCTGACTCTTCCTCCCAACGA	0.433													18	78					0	0	0.00188189	0	0
RGS4	5999	broad.mit.edu	37	1	163043410	163043410	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:163043410G>A	uc009wuy.2	+	4	887	c.376G>A	c.(376-378)GAG>AAG	p.E126K	RGS4_uc001gcl.3_Missense_Mutation_p.E223K|RGS4_uc009wuz.2_Intron|RGS4_uc009wva.2_Missense_Mutation_p.E108K	NM_005613	NP_005604	P49798	RGS4_HUMAN	regulator of G-protein signaling 4 isoform 2	126	RGS.				inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(2)|central_nervous_system(1)	3						GGCAACCAAAGAGGTAGGttt	0.214													6	10					0	0	0.00198382	0	0
DUSP27	92235	broad.mit.edu	37	1	167095812	167095812	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:167095812G>A	uc001geb.1	+	5	1444	c.1444G>A	c.(1444-1446)GAG>AAG	p.E482K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	482					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CGCATGGAACGAGAGGCTGCT	0.647													14	27					0	0	0.00244969	0	0
DUSP27	92235	broad.mit.edu	37	1	167097730	167097730	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:167097730G>A	uc001geb.1	+	5	3362	c.3362G>A	c.(3361-3363)CGG>CAG	p.R1121Q		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1121					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TCCCAGTATCGGAGAAGCACT	0.512													13	21					0	0	0.00185496	0	0
DUSP27	92235	broad.mit.edu	37	1	167097732	167097732	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:167097732A>T	uc001geb.1	+	5	3364	c.3364A>T	c.(3364-3366)AGA>TGA	p.R1122*		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1122					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CCAGTATCGGAGAAGCACTGA	0.517													13	21					0	0	0.00185496	0	0
ADCY10	55811	broad.mit.edu	37	1	167780031	167780031	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:167780031C>T	uc001ger.2	-	32	4900	c.4602G>A	c.(4600-4602)CTG>CTA	p.L1534L	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Silent_p.L1442L|ADCY10_uc010plj.1_Silent_p.L1381L	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1534					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AGGCTGTGTTCAGGAAGAGGC	0.488													21	41					0	0	0.000878237	0	0
ADCY10	55811	broad.mit.edu	37	1	167815065	167815065	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:167815065C>T	uc001ger.2	-	21	3041	c.2743G>A	c.(2743-2745)GAA>AAA	p.E915K	ADCY10_uc009wvk.2_Missense_Mutation_p.E823K|ADCY10_uc010plj.1_Missense_Mutation_p.E762K|ADCY10_uc009wvl.2_Missense_Mutation_p.E914K	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	915					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TTCTCCAGTTCACGAAGCTGT	0.498													14	27					0	0	0.000422831	0	0
DPT	1805	broad.mit.edu	37	1	168698194	168698194	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:168698194C>T	uc001gfp.2	-	1	235	c.219G>A	c.(217-219)TGG>TGA	p.W73*		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	73	2 X 53-55 AA tandem repeats.|1-1.|3 X 6 AA repeats of D-R-[EQ]-W-[NQK]- [FY].|2-1.				cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					AGGCGTAGTTCCATTGTCTGT	0.587													25	54					0	0	0.00127121	0	0
F5	2153	broad.mit.edu	37	1	169484697	169484697	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:169484697G>A	uc001ggg.1	-	24	6658	c.6513C>T	c.(6511-6513)TCC>TCT	p.S2171S		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	2171	F5/8 type C 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CCACCATGGAGGATTTCAGCC	0.438													27	125					0	0	0.000692331	0	0
SCYL3	57147	broad.mit.edu	37	1	169847945	169847945	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:169847945G>A	uc001ggs.2	-	3	379	c.181C>T	c.(181-183)CGT>TGT	p.R61C	SCYL3_uc001ggt.2_Missense_Mutation_p.R61C|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	61	Protein kinase.				cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CAAGGGTGACGAAGTGTCTTC	0.408													16	109					0	0	0.000958276	0	0
FMO1	2326	broad.mit.edu	37	1	171251278	171251278	+	Missense_Mutation	SNP	G	A	A	rs149030329	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:171251278G>A	uc009wvz.2	+	7	1125	c.989G>A	c.(988-990)GGA>GAA	p.G330E	FMO1_uc010pme.1_Missense_Mutation_p.G267E|FMO1_uc001ghl.2_Missense_Mutation_p.G330E|FMO1_uc001ghm.2_Missense_Mutation_p.G330E|FMO1_uc001ghn.2_Missense_Mutation_p.G330E	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	330					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TTTGCCACTGGATACACATTT	0.413													14	32					0	0	0.000958276	0	0
MYOC	4653	broad.mit.edu	37	1	171621368	171621368	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:171621368C>T	uc001ghu.2	-	1	406	c.384G>A	c.(382-384)CGG>CGA	p.R128R	MYOC_uc010pmk.1_Intron	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	128	Potential.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CCAGCTGGTCCCGCTCCCGCC	0.612													27	50					0	0	0.000878237	0	0
TNFSF4	7292	broad.mit.edu	37	1	173155778	173155778	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:173155778C>T	uc001giw.2	-	3	585	c.429G>A	c.(427-429)CTG>CTA	p.L143L	TNFSF4_uc001giv.2_Silent_p.L93L	NM_003326	NP_003317	P23510	TNFL4_HUMAN	tumor necrosis factor (ligand) superfamily,	143	Extracellular (Potential).				acute inflammatory response|cellular response to lipopolysaccharide|cellular response to prostaglandin E stimulus|chemokine (C-C motif) ligand 11 production|defense response to nematode|interleukin-4-dependent isotype switching to IgE isotypes|memory T cell activation|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of regulatory T cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T-helper 1 cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of alpha-beta T cell proliferation|positive regulation of B cell activation|positive regulation of immunoglobulin mediated immune response|positive regulation of immunoglobulin secretion|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-13 production|positive regulation of interleukin-4 production|positive regulation of interleukin-6 production|positive regulation of memory T cell differentiation|positive regulation of T cell cytokine production|positive regulation of T-helper 2 cell differentiation|positive regulation of type 2 immune response|response to virus|signal transduction|T-helper 2 cell activation	cell surface|extracellular space|integral to plasma membrane	cytokine activity			central_nervous_system(1)	1						CTTTGTAAGTCAGAGAGGCCA	0.463													7	61					0	0	0.000274275	0	0
SLC9A11	284525	broad.mit.edu	37	1	173486830	173486830	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:173486830G>A	uc001giz.2	-	23	3176	c.2753C>T	c.(2752-2754)TCT>TTT	p.S918F	SLC9A11_uc009wwe.2_Missense_Mutation_p.S476F	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	918	cNMP.				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AAAGGTAGGAGATAAACTATG	0.388													11	91					0	0	0.00185496	0	0
SLC9A11	284525	broad.mit.edu	37	1	173567128	173567128	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:173567128G>A	uc001giz.2	-	4	695	c.272C>T	c.(271-273)TCA>TTA	p.S91L	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	91	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AGAATAAAGTGAAAAACTTGA	0.303													40	46					0	0	0.00170553	0	0
TNN	63923	broad.mit.edu	37	1	175066590	175066590	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:175066590G>A	uc001gkl.1	+	8	1739	c.1626G>A	c.(1624-1626)GTG>GTA	p.V542V	TNN_uc010pmx.1_Intron	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	542	Fibronectin type-III 4.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTGACCGGGTGACTGAGAATA	0.512													8	28					0	0	0.000274275	0	0
TNR	7143	broad.mit.edu	37	1	175304905	175304905	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:175304905G>A	uc001gkp.1	-	18	3654	c.3573C>T	c.(3571-3573)TTC>TTT	p.F1191F	TNR_uc009wwu.1_Silent_p.F1191F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1191	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCCATTTCCGGAAAAAATCAG	0.403													10	94					0	0	0.00185496	0	0
TNR	7143	broad.mit.edu	37	1	175365882	175365882	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:175365882C>T	uc001gkp.1	-	3	1119	c.1038G>A	c.(1036-1038)TGG>TGA	p.W346*	TNR_uc009wwu.1_Nonsense_Mutation_p.W346*|TNR_uc010pmz.1_Intron	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	346	Fibronectin type-III 1.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCGGCCCGTCCCATTCCAGCT	0.607													28	73					0	0	0.0024448	0	0
PAPPA2	60676	broad.mit.edu	37	1	176681030	176681030	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:176681030C>T	uc001gkz.2	+	12	4875	c.3711C>T	c.(3709-3711)CCC>CCT	p.P1237P	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1237					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCTGGTTTCCCTGTGTTGCCA	0.453													25	32					0	0	0.000878237	0	0
ASTN1	460	broad.mit.edu	37	1	176992672	176992672	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:176992672C>T	uc001glc.2	-	7	1518	c.1306G>A	c.(1306-1308)GAT>AAT	p.D436N	ASTN1_uc001glb.1_Missense_Mutation_p.D436N|ASTN1_uc001gld.1_Missense_Mutation_p.D436N|ASTN1_uc009wwx.1_Missense_Mutation_p.D436N|ASTN1_uc001gle.3_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	436					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TCACTGGCATCCAGCTGGCTC	0.607													7	21					0	0	0.000157383	0	0
ASTN1	460	broad.mit.edu	37	1	177133714	177133714	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:177133714C>T	uc001glc.2	-	1	311	c.99G>A	c.(97-99)CTG>CTA	p.L33L	ASTN1_uc001glb.1_Silent_p.L33L|ASTN1_uc001gld.1_Silent_p.L33L|ASTN1_uc009wwx.1_Silent_p.L33L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	33					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GCTTGCACTCCAGCTCCTTGG	0.682													16	30					0	0	0.000958276	0	0
SEC16B	89866	broad.mit.edu	37	1	177908853	177908853	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:177908853G>A	uc001gli.1	-	18	2277	c.2187C>T	c.(2185-2187)GCC>GCT	p.A729A	SEC16B_uc001glk.1_Silent_p.A406A|SEC16B_uc009wwy.1_Silent_p.A284A|SEC16B_uc001glh.1_Silent_p.A388A|SEC16B_uc009wwz.1_Silent_p.A388A|SEC16B_uc001glj.1_Silent_p.A730A	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	729					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						TTGTTCCTCCGGCTCCCGAAA	0.408													8	11					0	0	0.000274275	0	0
ABL2	27	broad.mit.edu	37	1	179079431	179079431	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:179079431G>A	uc001gmj.3	-	11	2098	c.1811C>T	c.(1810-1812)TCC>TTC	p.S604F	ABL2_uc010pnf.1_Missense_Mutation_p.S604F|ABL2_uc010png.1_Missense_Mutation_p.S583F|ABL2_uc010pnh.1_Missense_Mutation_p.S583F|ABL2_uc001gmg.3_Missense_Mutation_p.S589F|ABL2_uc001gmi.3_Missense_Mutation_p.S589F|ABL2_uc001gmh.3_Missense_Mutation_p.S568F|ABL2_uc010pne.1_Missense_Mutation_p.S568F	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	604					axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TGCTAAACTGGAAGCAGAATT	0.453			T	ETV6	AML								121	238					0	0	0.000781405	0	0
TDRD5	163589	broad.mit.edu	37	1	179604947	179604947	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:179604947C>T	uc001gnf.1	+	9	1695	c.1445C>T	c.(1444-1446)TCT>TTT	p.S482F	TDRD5_uc010pnp.1_Missense_Mutation_p.S482F|TDRD5_uc001gnh.1_Missense_Mutation_p.S37F	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	482					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TATATCATCTCTCCTAGTCAA	0.458													7	64					0	0	0.000274275	0	0
TDRD5	163589	broad.mit.edu	37	1	179620193	179620193	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:179620193C>T	uc001gnf.1	+	12	2242	c.1992C>T	c.(1990-1992)ATC>ATT	p.I664I	TDRD5_uc010pnp.1_Silent_p.I664I|TDRD5_uc001gnh.1_Silent_p.I219I	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	664					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GAGAAAATATCTCTTCTAAGG	0.333													7	90					0	0	0.000274275	0	0
TOR1AIP2	163590	broad.mit.edu	37	1	179815807	179815807	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:179815807G>A	uc001gnk.2	-	6	1200	c.812C>T	c.(811-813)TCC>TTC	p.S271F	TOR1AIP2_uc001gnl.2_Missense_Mutation_p.S271F	NM_145034	NP_659471	Q8NFQ8	TOIP2_HUMAN	torsin A interacting protein 2	271						endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(1)	1						CCACAGGAAGGAACTCTGGCC	0.512													32	62					0	0	0.00058488	0	0
QSOX1	5768	broad.mit.edu	37	1	180151427	180151428	+	Missense_Mutation	DNP	GG	AA	AA	rs148485913		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:180151427_180151428GG>AA	uc001gnz.2	+	6	800_801	c.725_726GG>AA	c.(724-726)CGG>CAA	p.R242Q	QSOX1_uc001gny.2_Missense_Mutation_p.R242Q|QSOX1_uc001goa.2_Missense_Mutation_p.R242Q|QSOX1_uc001gob.1_RNA	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	242					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						CTGCTGTTCCGGAATGGCTCTG	0.604													53	105					0	0	6.4e-05	0	0
XPR1	9213	broad.mit.edu	37	1	180804099	180804100	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:180804099_180804100GG>AA	uc001goi.2	+	10	1416_1417	c.1224_1225GG>AA	c.(1222-1227)ATGGAC>ATAAAC	p.408_409MD>IN	XPR1_uc009wxm.2_Missense_Mutation_p.408_409MD>IN|XPR1_uc009wxn.2_Missense_Mutation_p.408_409MD>IN	NM_004736	NP_004727	Q9UBH6	XPR1_HUMAN	xenotropic and polytropic retrovirus receptor	408_409	Helical; (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0						TGATACTGATGGACCTGGAATA	0.436													18	45					0	0	6.4e-05	0	0
XPR1	9213	broad.mit.edu	37	1	180849408	180849408	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:180849408C>T	uc001goi.2	+	14	2197	c.2005C>T	c.(2005-2007)CTG>TTG	p.L669L	XPR1_uc009wxn.2_Silent_p.L604L	NM_004736	NP_004727	Q9UBH6	XPR1_HUMAN	xenotropic and polytropic retrovirus receptor	669	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0						GAGCATATCCCTGCGCCGGCC	0.488													24	46					0	0	0.00127121	0	0
CACNA1E	777	broad.mit.edu	37	1	181754860	181754860	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:181754860C>T	uc001gow.2	+	43	5856	c.5691C>T	c.(5689-5691)CCC>CCT	p.P1897P	CACNA1E_uc009wxs.2_Silent_p.P1785P|CACNA1E_uc009wxt.2_Silent_p.P1123P	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1897	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AAAATGCCCCCATGTTCCAGC	0.478													58	137					0	0	0.000781405	0	0
ZNF648	127665	broad.mit.edu	37	1	182026917	182026917	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:182026917C>T	uc001goz.2	-	2	437	c.229G>A	c.(229-231)GAG>AAG	p.E77K		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	77					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTCTCTTCCTCTTTGCCCAGT	0.557													15	36					0	0	0.000308642	0	0
C1orf14	81626	broad.mit.edu	37	1	182873548	182873548	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:182873548C>T	uc001gpu.2	-	8	1639	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	C1orf14_uc001gpv.2_Missense_Mutation_p.E333K|C1orf14_uc010pnz.1_Missense_Mutation_p.E310K|C1orf14_uc001gpw.2_Missense_Mutation_p.E172K	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	524											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		ATCATAATTTCCTCTCTCTTT	0.363													5	49					0	0	0.00116845	0	0
C1orf14	81626	broad.mit.edu	37	1	182909608	182909608	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:182909608G>A	uc001gpu.2	-	3	911	c.626C>T	c.(625-627)TCT>TTT	p.S209F	C1orf14_uc001gpv.2_Missense_Mutation_p.S90F|C1orf14_uc010pnz.1_Missense_Mutation_p.S67F|C1orf14_uc001gpw.2_5'UTR	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	281											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		AATGTTGGAAGAAAAGGGCTC	0.383													9	81					0	0	0.000673444	0	0
RGL1	23179	broad.mit.edu	37	1	183816876	183816876	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:183816876C>T	uc001gqo.2	+	3	472	c.315C>T	c.(313-315)TCC>TCT	p.S105S	RGL1_uc010pof.1_Intron|RGL1_uc001gqm.2_Silent_p.S140S|RGL1_uc010pog.1_Silent_p.S103S|RGL1_uc010poh.1_Silent_p.S103S|RGL1_uc010poi.1_Silent_p.S105S	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	105	N-terminal Ras-GEF.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						GCTTTGCCTCCACTAAAGAAG	0.453													28	54					0	0	0.00106085	0	0
GLT25D2	23127	broad.mit.edu	37	1	183938490	183938490	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:183938490C>T	uc001gqr.2	-	5	1117	c.745G>A	c.(745-747)GAC>AAC	p.D249N	GLT25D2_uc010poj.1_Missense_Mutation_p.D249N|GLT25D2_uc001gqs.2_Missense_Mutation_p.D129N	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	249					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						GTCAGCTTGTCCGAGGCCTCC	0.537													10	69					0	0	0.000673444	0	0
FAM129A	116496	broad.mit.edu	37	1	184764157	184764157	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:184764157C>T	uc001gra.2	-	14	2935	c.2741G>A	c.(2740-2742)GGA>GAA	p.G914E	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	914					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						ACCACCTTCTCCCTCCTTCAC	0.517													37	90					0	0	0.00128727	0	0
FAM129A	116496	broad.mit.edu	37	1	184764460	184764460	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:184764460C>T	uc001gra.2	-	14	2632	c.2438G>A	c.(2437-2439)GGG>GAG	p.G813E	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	813	Glu-rich.				negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TGGGAGCTCCCCCTCCATGGG	0.657													12	27					0	0	0.00136819	0	0
HMCN1	83872	broad.mit.edu	37	1	185987463	185987463	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:185987463G>A	uc001grq.1	+	34	5678	c.5449G>A	c.(5449-5451)GAA>AAA	p.E1817K		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1817	Ig-like C2-type 15.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCACAAGAAGGAATTTGAAGT	0.388													17	48					0	0	0.00074312	0	0
KCNT2	343450	broad.mit.edu	37	1	196309636	196309636	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:196309636G>C	uc001gtd.1	-	16	1678	c.1618C>G	c.(1618-1620)CCT>GCT	p.P540A	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.P490A|KCNT2_uc001gtf.1_Missense_Mutation_p.P540A|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.P540A|KCNT2_uc001gth.1_Missense_Mutation_p.P61A	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	540	Cytoplasmic (Potential).|RCK N-terminal.					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						ATGTATCGAGGACCTGGATTC	0.318													4	55					0	0	0.00116845	0	0
CFHR1	3078	broad.mit.edu	37	1	196794625	196794625	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:196794625C>T	uc001gtn.2	+	2	191	c.77C>T	c.(76-78)CCA>CTA	p.P26L	CFHR1_uc001gtm.2_Intron	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	26	Sushi 1.				complement activation	extracellular space					0						TGTGATTTTCCAAAAATAAAC	0.269													8	25					0	0	0.000274275	0	0
CFHR2	3080	broad.mit.edu	37	1	196918726	196918726	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:196918726G>A	uc001gtq.1	+	2	277	c.200G>A	c.(199-201)TGG>TAG	p.W67*	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	67	Sushi 1.					extracellular region				skin(2)|ovary(1)	3						AAATCCTTTTGGACTCGCATA	0.383													11	25					0	0	0.000978159	0	0
CFHR5	81494	broad.mit.edu	37	1	196977645	196977645	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:196977645G>A	uc001gts.3	+	10	1670	c.1542G>A	c.(1540-1542)ATG>ATA	p.M514I		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	514	Sushi 9.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AAGAAAACATGAACAAAAATA	0.299													15	23					0	0	0.000422831	0	0
F13B	2165	broad.mit.edu	37	1	197026215	197026215	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:197026215C>T	uc001gtt.1	-	7	1143	c.1099G>A	c.(1099-1101)GGC>AGC	p.G367S		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	367	Sushi 6.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						AGAAGGTAGCCGCTTTTACAT	0.408													18	39					0	0	0.00278032	0	0
CRB1	23418	broad.mit.edu	37	1	197390134	197390134	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:197390134C>T	uc001gtz.2	+	6	1311	c.1176C>T	c.(1174-1176)ATC>ATT	p.I392I	CRB1_uc010poz.1_Silent_p.I323I|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.I280I|CRB1_uc010ppb.1_Silent_p.I392I|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_5'UTR|CRB1_uc001gub.1_Silent_p.I41I	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	392	Extracellular (Potential).|EGF-like 9.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TAACAGGAATCCACTGCGAAG	0.348													19	70					0	0	0.00152264	0	0
LHX9	56956	broad.mit.edu	37	1	197889116	197889116	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:197889116C>T	uc001guk.1	+	2	626	c.189C>T	c.(187-189)CTC>CTT	p.L63L	LHX9_uc001gui.1_Silent_p.L54L|LHX9_uc001guj.1_Silent_p.L69L	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	63					motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						TGCCCCCGCTCAGCCCGGAGA	0.662													51	95					0	0	0.000781405	0	0
PTPRC	5788	broad.mit.edu	37	1	198665949	198665949	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:198665949C>T	uc001gur.1	+	4	383	c.203C>T	c.(202-204)TCA>TTA	p.S68L	PTPRC_uc001gus.1_Missense_Mutation_p.S68L|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Intron|PTPRC_uc009wzf.1_Intron|PTPRC_uc010ppg.1_Intron|PTPRC_uc001guu.1_Missense_Mutation_p.S111L|PTPRC_uc001guv.1_Intron|PTPRC_uc001guw.1_Intron	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	68	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						AATGACTTCTCAGAGACCACA	0.463													12	72					0	0	0.00185496	0	0
CACNA1S	779	broad.mit.edu	37	1	201012548	201012548	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:201012548C>T	uc001gvv.2	-	40	5136	c.4909G>A	c.(4909-4911)GAG>AAG	p.E1637K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1637	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GACTCCATCTCTTCCATCTCT	0.557											OREG0014067	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	47					0	0	0.000566183	0	0
LAD1	3898	broad.mit.edu	37	1	201355609	201355609	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:201355609C>T	uc001gwm.2	-	3	1115	c.880G>A	c.(880-882)GAG>AAG	p.E294K	LAD1_uc009wzu.1_Missense_Mutation_p.E316K	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	294						basement membrane	structural molecule activity				0						GCTGGCGGCTCCTGCGCCAGG	0.637													30	55					0	0	0.000692331	0	0
CSRP1	1465	broad.mit.edu	37	1	201453853	201453853	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:201453853G>A	uc001gws.2	-	6	761	c.570C>T	c.(568-570)GTC>GTT	p.V190V	CSRP1_uc001gwr.1_RNA|CSRP1_uc010ppr.1_Silent_p.V184V	NM_004078	NP_004069	P21291	CSRP1_HUMAN	cysteine and glycine-rich protein 1 isoform 1	190						nucleus	zinc ion binding			ovary(1)	1						ACTCAGAGTGGACCAAGGCCC	0.542													14	26					0	0	0.00244969	0	0
PTPN7	5778	broad.mit.edu	37	1	202123316	202123316	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:202123316C>T	uc001gxm.1	-	6	735	c.604G>A	c.(604-606)GAG>AAG	p.E202K	PTPN7_uc001gxl.1_Missense_Mutation_p.E241K|PTPN7_uc001gxn.1_Missense_Mutation_p.E202K|PTPN7_uc010ppv.1_Missense_Mutation_p.E21K|PTPN7_uc010ppw.1_Missense_Mutation_p.E150K|PTPN7_uc010ppx.1_Missense_Mutation_p.E276K|PTPN7_uc010ppy.1_Intron|PTPN7_uc001gxo.1_Missense_Mutation_p.E154K	NM_002832	NP_002823	P35236	PTN7_HUMAN	protein tyrosine phosphatase, non-receptor type	202	Tyrosine-protein phosphatase.					cytosol|internal side of plasma membrane	protein binding|protein tyrosine phosphatase activity			skin(1)	1						CCTCCTACCTCCTTGCCCTCT	0.592													17	31					0	0	0.000958276	0	0
PPFIA4	8497	broad.mit.edu	37	1	203033126	203033126	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:203033126C>T	uc001gyz.2	+	12	2120	c.1527C>T	c.(1525-1527)TTC>TTT	p.F509F	PPFIA4_uc009xaj.2_Silent_p.F1140F|PPFIA4_uc010pqf.1_Silent_p.F722F|PPFIA4_uc001gza.2_Silent_p.F500F|PPFIA4_uc001gzb.1_Silent_p.F195F|PPFIA4_uc001gzc.1_Silent_p.F51F	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	509	SAM 2.				cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						TGGACAGCTTCCATCGGTGAG	0.557													13	42					0	0	0.00185496	0	0
MYBPH	4608	broad.mit.edu	37	1	203140699	203140699	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:203140699G>A	uc001gzh.1	-	5	664	c.605C>T	c.(604-606)CCT>CTT	p.P202L	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	202	Ig-like C2-type 1.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		CTGAGGCTTAGGCTTCCCCTG	0.642													6	16					0	0	0.000157383	0	0
ATP2B4	493	broad.mit.edu	37	1	203682370	203682370	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:203682370C>T	uc001gzw.2	+	14	3173	c.2289C>T	c.(2287-2289)ACC>ACT	p.T763T	ATP2B4_uc001gzv.2_Silent_p.T763T|ATP2B4_uc009xaq.2_Silent_p.T763T	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	763	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ACAAGCACACCCTGGTGAAAG	0.562													11	68					0	0	0.00244969	0	0
GOLT1A	127845	broad.mit.edu	37	1	204172067	204172067	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:204172067C>T	uc001has.1	-	2	260	c.74G>A	c.(73-75)GGA>GAA	p.G25E	GOLT1A_uc001hat.1_Missense_Mutation_p.G25E	NM_198447	NP_940849	Q6ZVE7	GOT1A_HUMAN	golgi transport 1 homolog A	25	Helical; Name=1; (Potential).				protein transport|vesicle-mediated transport	Golgi membrane|integral to membrane					0	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.244)			CAGGAGTGTTCCAAAGAGGAT	0.562													25	46					0	0	0.00106085	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204228606	204228606	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:204228606C>T	uc001hau.2	-	8	1104	c.787G>A	c.(787-789)GGG>AGG	p.G263R	PLEKHA6_uc009xaw.1_5'Flank|PLEKHA6_uc009xax.1_5'Flank|PLEKHA6_uc009xay.1_5'Flank|PLEKHA6_uc009xaz.1_5'Flank|PLEKHA6_uc009xba.1_5'Flank|PLEKHA6_uc009xbb.1_5'Flank|PLEKHA6_uc009xbc.1_5'Flank	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	263	Pro-rich.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GGCTGTTCCCCACCCCCTGGC	0.672													14	26					0	0	0.00244969	0	0
SLC26A9	115019	broad.mit.edu	37	1	205884532	205884532	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:205884532C>T	uc001hdq.2	-	21	2443	c.2329G>A	c.(2329-2331)GAG>AAG	p.E777K	SLC26A9_uc001hdm.2_5'UTR|SLC26A9_uc001hdn.2_5'UTR|SLC26A9_uc001hdo.2_Missense_Mutation_p.E445K|SLC26A9_uc001hdp.2_Missense_Mutation_p.E777K	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	777						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CCGAACATCTCCTGCAGGAAC	0.597													12	61					0	0	0.00185496	0	0
CTSE	1510	broad.mit.edu	37	1	206328852	206328852	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:206328852G>A	uc001hdu.2	+	7	1037	c.919G>A	c.(919-921)GAT>AAT	p.D307N	CTSE_uc001hdv.2_Intron|CTSE_uc010prs.1_Intron	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	312					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			AGCCCCCGTGGATGGAGAAGT	0.602													4	28					0	0	0.00198382	0	0
LGTN	1939	broad.mit.edu	37	1	206767083	206767083	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:206767083G>A	uc001heh.2	-	14	1778	c.1569C>T	c.(1567-1569)ATC>ATT	p.I523I	LGTN_uc009xbw.2_Silent_p.I399I	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	523	SUI1.				intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			GCTGCTGAAGGATGGCAGCCA	0.627													11	29					0	0	0.000673444	0	0
LGTN	1939	broad.mit.edu	37	1	206785667	206785667	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:206785667G>A	uc001heh.2	-	1	238	c.29C>T	c.(28-30)TCC>TTC	p.S10F	LGTN_uc009xbw.2_Missense_Mutation_p.S10F|LGTN_uc010prw.1_Missense_Mutation_p.S10F	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	10					intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			GGCCGTGTTGGACTTGACCCG	0.622													10	91					0	0	0.000978159	0	0
PIGR	5284	broad.mit.edu	37	1	207108853	207108853	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:207108853G>A	uc001hez.2	-	5	1540	c.1356C>T	c.(1354-1356)ACC>ACT	p.T452T	PIGR_uc009xbz.2_Silent_p.T452T	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	452	Ig-like V-type 4.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TGATCTCCACGGTGGTCCTCC	0.562											OREG0014186	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	78					0	0	0.000157383	0	0
FCAMR	83953	broad.mit.edu	37	1	207139141	207139141	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:207139141G>A	uc001hfa.3	-	4	732	c.232C>T	c.(232-234)CCC>TCC	p.P78S	FCAMR_uc001hfb.2_Missense_Mutation_p.P78S|FCAMR_uc009xca.1_Missense_Mutation_p.P78S|FCAMR_uc001hfc.2_Missense_Mutation_p.P53S	NM_001122980	NP_001116452	Q8WWV6	FCAMR_HUMAN	Fc receptor, IgA, IgM, high affinity isoform 2	33	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						GTCCTGGAGGGGAGAGAGCCC	0.607													5	28					0	0	0.00116845	0	0
C1orf116	79098	broad.mit.edu	37	1	207198353	207198353	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:207198353C>T	uc001hfd.2	-	3	421	c.162G>A	c.(160-162)CTG>CTA	p.L54L	C1orf116_uc009xcb.1_5'UTR	NM_023938	NP_076427	Q9BW04	SARG_HUMAN	specifically androgen-regulated protein isoform	54						cytoplasm|plasma membrane	receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Prostate(682;0.19)					TGGTCTCCTCCAGGAAGAGCA	0.473													13	31					0	0	0.000566183	0	0
PFKFB2	5208	broad.mit.edu	37	1	207242814	207242814	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:207242814C>G	uc001hfg.2	+	11	1142	c.1033C>G	c.(1033-1035)CCA>GCA	p.P345A	PFKFB2_uc010psc.1_Missense_Mutation_p.P247A|PFKFB2_uc001hfh.2_Missense_Mutation_p.P345A|PFKFB2_uc009xcc.2_Missense_Mutation_p.P303A|PFKFB2_uc010psd.1_Missense_Mutation_p.P159A	NM_006212	NP_006203	O60825	F262_HUMAN	6-phosphofructo-2-kinase/fructose-2,	345	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			ovary(1)	1	Prostate(682;0.19)					GAAACGGTACCCAGAAGAGTT	0.488													7	74					0	0	0.00136819	0	0
CR1L	1379	broad.mit.edu	37	1	207890927	207890927	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:207890927G>A	uc001hga.3	+	11	1654	c.1533G>A	c.(1531-1533)GGG>GGA	p.G511G	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	511	Sushi 8.					cytoplasm|extracellular region|membrane					0						CAGACAGAGGGATGACCTTCA	0.537													23	70					0	0	0.00229938	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209948796	209948796	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:209948796G>A	uc001hho.2	+	10	1167	c.877G>A	c.(877-879)GAG>AAG	p.E293K	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.E273K|TRAF3IP3_uc001hhm.1_Missense_Mutation_p.E293K|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.E273K|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.E293K	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	293	Cytoplasmic (Potential).|Potential.					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		AGTGCTGGAGGAGAAAATGAA	0.512													12	39					0	0	0.000308642	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209950737	209950737	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:209950737G>A	uc001hho.2	+	12	1384	c.1094G>A	c.(1093-1095)CGA>CAA	p.R365Q	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.R345Q|TRAF3IP3_uc001hhm.1_Intron|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.R345Q|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.R365Q	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	365	Cytoplasmic (Potential).|Potential.					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		CAGGCCCTGCGATTTTTGGAA	0.537													7	28					0	0	0.000157383	0	0
KCNH1	3756	broad.mit.edu	37	1	211192179	211192179	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:211192179C>T	uc001hib.2	-	6	1148	c.978G>A	c.(976-978)GGG>GGA	p.G326G	KCNH1_uc001hic.2_Intron	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	326	Extracellular (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		AACCAATCTTCCCTGGATCAC	0.458													17	87					0	0	0.000958276	0	0
PTPN14	5784	broad.mit.edu	37	1	214537942	214537942	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:214537942G>A	uc001hkk.1	-	18	3619	c.3348C>T	c.(3346-3348)CCC>CCT	p.P1116P		NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	1116	Tyrosine-protein phosphatase.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GGACCACGATGGGCGGGTGCC	0.542													16	36					0	0	0.000958276	0	0
USH2A	7399	broad.mit.edu	37	1	216497628	216497628	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:216497628C>T	uc001hku.1	-	7	1597	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	USH2A_uc001hkv.2_Missense_Mutation_p.E404K	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	404	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AAACTATTTTCCTTCTTCCTT	0.328										HNSCC(13;0.011)			15	35					0	0	0.000422831	0	0
EPRS	2058	broad.mit.edu	37	1	220197740	220197740	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:220197740G>A	uc001hly.1	-	8	1079	c.809C>T	c.(808-810)TCG>TTG	p.S270L	EPRS_uc010puf.1_Missense_Mutation_p.S21L|EPRS_uc001hlz.1_Missense_Mutation_p.S270L|EPRS_uc009xdt.1_Missense_Mutation_p.S71L	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	270	Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	AAAATGATCCGAAGTATAAGT	0.353													20	41					0	0	0.00121646	0	0
MOSC1	64757	broad.mit.edu	37	1	220970134	220970134	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:220970134G>A	uc001hms.2	+	3	847	c.599G>A	c.(598-600)CGA>CAA	p.R200Q	MOSC1_uc001hmt.2_Missense_Mutation_p.R200Q	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	200	MOSC.						molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		GACTTGTTCCGACCCAAGGAC	0.577													6	7					0	0	0.00116845	0	0
HHIPL2	79802	broad.mit.edu	37	1	222716994	222716994	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:222716994G>A	uc001hnh.1	-	2	917	c.859C>T	c.(859-861)CGC>TGC	p.R287C		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	287					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TAGAACTTGCGATTGTGGCGG	0.473													67	432					0	0	0.000781405	0	0
C1orf58	148362	broad.mit.edu	37	1	222904715	222904715	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:222904715C>T	uc001hnq.1	+	12	1401	c.1006C>T	c.(1006-1008)CCA>TCA	p.P336S	C1orf58_uc010put.1_Missense_Mutation_p.P304S|C1orf58_uc010puu.1_Intron|C1orf58_uc010puv.1_Missense_Mutation_p.P304S|uc001hnr.1_Intron|uc001hns.1_5'Flank	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	336	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		TCAAAAAATTCCAACAGAAGC	0.269													20	228					0	0	0.00278032	0	0
FBXO28	23219	broad.mit.edu	37	1	224345355	224345355	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:224345355C>T	uc001hoh.2	+	5	1055	c.1014C>T	c.(1012-1014)TCC>TCT	p.S338S	FBXO28_uc009xef.2_3'UTR|FBXO28_uc010pvc.1_Silent_p.S133S	NM_015176	NP_055991	Q9NVF7	FBX28_HUMAN	F-box protein 28 isoform a	338										ovary(2)|kidney(2)|lung(1)	5	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.0363)		CCTCAGGGTCCGGGCAGAATG	0.458													15	99					0	0	0.00244969	0	0
CABC1	56997	broad.mit.edu	37	1	227152760	227152760	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:227152760C>T	uc001hqm.1	+	8	3656	c.237C>T	c.(235-237)TTC>TTT	p.F79F	CABC1_uc010pvp.1_Silent_p.F42F|CABC1_uc001hqn.1_Silent_p.F79F|CABC1_uc009xeq.1_Silent_p.F27F|CABC1_uc010pvq.1_Intron|CABC1_uc010pvr.1_5'Flank	NM_020247	NP_064632	Q8NI60	ADCK3_HUMAN	chaperone, ABC1 activity of bc1 complex like	79					cell death	mitochondrion	ATP binding|protein serine/threonine kinase activity				0		Prostate(94;0.0771)				AAGGGGAGTTCCACTTCTCAG	0.592													33	77					0	0	0.000953801	0	0
PRSS38	339501	broad.mit.edu	37	1	228003501	228003501	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:228003501C>T	uc001hrh.2	+	1	84	c.84C>T	c.(82-84)CCC>CCT	p.P28P		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	28					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						TGGCCCCTCCCCGGGTCGCAG	0.697													5	27					0	0	0.00116845	0	0
MRPL55	128308	broad.mit.edu	37	1	228295420	228295420	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:228295420C>T	uc001hry.2	-	2	921	c.177G>A	c.(175-177)CAG>CAA	p.Q59Q	MRPL55_uc001hrz.3_Silent_p.Q95Q|MRPL55_uc009xex.2_Silent_p.Q59Q|MRPL55_uc001hsa.3_Silent_p.Q59Q|MRPL55_uc001hsb.3_Silent_p.Q59Q|MRPL55_uc001hsc.3_Silent_p.Q59Q|MRPL55_uc001hsd.3_Silent_p.Q59Q|MRPL55_uc001hse.3_Silent_p.Q59Q|MRPL55_uc001hsf.3_Silent_p.Q59Q|MRPL55_uc001hsg.3_Silent_p.Q59Q	NM_181465	NP_852130	Q7Z7F7	RM55_HUMAN	mitochondrial ribosomal protein L55 isoform a	59					translation	mitochondrial large ribosomal subunit	structural constituent of ribosome			central_nervous_system(1)	1		Prostate(94;0.0405)				TGGAGCCATCCTGCTTCACCA	0.647													19	35					0	0	0.00152264	0	0
OBSCN	84033	broad.mit.edu	37	1	228509535	228509535	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:228509535C>T	uc009xez.1	+	55	15037	c.14993C>T	c.(14992-14994)TCC>TTC	p.S4998F	OBSCN_uc001hsn.2_Missense_Mutation_p.S4998F	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4998					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCCGAGAGCTCCTCTGGGGGT	0.617													13	125					0	0	0.000566183	0	0
URB2	9816	broad.mit.edu	37	1	229771720	229771720	+	Missense_Mutation	SNP	C	T	T	rs115399585	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:229771720C>T	uc001hts.1	+	4	1496	c.1360C>T	c.(1360-1362)CGT>TGT	p.R454C	URB2_uc009xfd.1_Missense_Mutation_p.R454C	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	454						nucleolus				central_nervous_system(2)|ovary(1)	3						GGCGCTTATTCGTACTGTCTT	0.522													60	136					0	0	0.000781405	0	0
PGBD5	79605	broad.mit.edu	37	1	230468602	230468602	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:230468602G>A	uc010pwb.1	-	5	1054	c.1054C>T	c.(1054-1056)CCG>TCG	p.P352S	PGBD5_uc001htv.2_Missense_Mutation_p.P451S	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	352						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		TGCTGCACCGGGGAGTAGGCG	0.632													27	117					0	0	0.000953801	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232575022	232575022	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:232575022G>A	uc001hvg.2	-	13	4021	c.3863C>T	c.(3862-3864)TCC>TTC	p.S1288F	SIPA1L2_uc001hvf.2_Missense_Mutation_p.S362F	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1288				S -> P (in Ref. 2; BAB14273).	regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GTGGATCAGGGACCTGCTGCC	0.647													8	65					0	0	0.000274275	0	0
KIAA1383	54627	broad.mit.edu	37	1	232942939	232942939	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:232942939G>C	uc001hvh.2	+	1	2302	c.2170G>C	c.(2170-2172)GTT>CTT	p.V724L		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	582										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				AATCAGTGGAGTTTTTGATGA	0.333													5	39					0	0	0.000602214	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394590	233394590	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:233394590C>T	uc001hvl.2	-	5	1253	c.1018G>A	c.(1018-1020)GAC>AAC	p.D340N	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	340						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AAGGGCAGGTCCCCCTGGCAG	0.572													9	66					0	0	0.000274275	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514903	233514903	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:233514903G>A	uc001hvt.3	+	9	2412	c.2151G>A	c.(2149-2151)AAG>AAA	p.K717K	KIAA1804_uc001hvu.3_Silent_p.K163K	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	717					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CCCAGAGAAAGAAAACGGAGT	0.542													7	38					0	0	0.00198382	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367487	234367487	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:234367487G>A	uc001hwa.1	+	2	629	c.401G>A	c.(400-402)AGG>AAG	p.R134K	SLC35F3_uc001hvy.1_Missense_Mutation_p.R203K	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	134					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CAGCGATACAGGTAGGCGCGT	0.602													24	73					0	0	0.00127121	0	0
TBCE	6905	broad.mit.edu	37	1	235600750	235600750	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:235600750C>T	uc001hwz.1	+	12	1200	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	TBCE_uc010pxq.1_RNA|TBCE_uc001hxa.1_Silent_p.I359I|TBCE_uc010pxr.1_Silent_p.I410I|TBCE_uc001hxb.1_Silent_p.I246I	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	359	LRRCT.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			TACTCATTATCGCCAGCATTG	0.438													25	51					0	0	0.00127121	0	0
EDARADD	128178	broad.mit.edu	37	1	236645877	236645877	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:236645877G>A	uc001hxu.1	+	6	641	c.576G>A	c.(574-576)GAG>GAA	p.E192E	EDARADD_uc001hxv.1_Silent_p.E182E	NM_145861	NP_665860	Q8WWZ3	EDAD_HUMAN	EDAR-associated death domain isoform A	192	Death.				cell differentiation|signal transduction	cytoplasm					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.0232)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			CCGACGTGGAGAAGGTTCTGC	0.622													31	77					0	0	0.000814825	0	0
MTR	4548	broad.mit.edu	37	1	236973862	236973862	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:236973862C>G	uc001hyi.3	+	5	892	c.469C>G	c.(469-471)CCA>GCA	p.P157A	MTR_uc010pxv.1_RNA|MTR_uc010pxw.1_5'UTR|MTR_uc010pxx.1_Missense_Mutation_p.P157A|MTR_uc010pxy.1_Missense_Mutation_p.P157A|MTR_uc009xgj.1_5'UTR	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	157	Hcy-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	CTCTGTGTCCCCATCTGTGGA	0.323													3	117					0	0	6.4e-05	0	0
RGS7	6000	broad.mit.edu	37	1	241262042	241262042	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:241262042C>T	uc001hyv.2	-	3	429	c.99G>A	c.(97-99)CGG>CGA	p.R33R	RGS7_uc010pyh.1_Silent_p.R7R|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Silent_p.R33R|RGS7_uc009xgn.1_Silent_p.R33R|RGS7_uc001hyw.2_Silent_p.R33R	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	33					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity	p.R33W(1)		ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CATCTTGCATCCGTGCTATGA	0.338													19	42					0	0	0.00188189	0	0
PLD5	200150	broad.mit.edu	37	1	242271057	242271057	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:242271057C>T	uc001hzn.1	-	8	1282	c.1155G>A	c.(1153-1155)TGG>TGA	p.W385*	PLD5_uc001hzl.3_Nonsense_Mutation_p.W323*|PLD5_uc001hzm.3_Nonsense_Mutation_p.W175*|PLD5_uc001hzo.1_Nonsense_Mutation_p.W293*			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	385						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			CAGTTTCCTTCCAGAAGCTTA	0.378													42	108					0	0	0.00148497	0	0
SDCCAG8	10806	broad.mit.edu	37	1	243437849	243437849	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:243437849C>T	uc001hzw.2	+	4	467	c.311C>T	c.(310-312)TCA>TTA	p.S104L	SDCCAG8_uc010pyk.1_Intron|SDCCAG8_uc010pyl.1_Intron	NM_006642	NP_006633	Q86SQ7	SDCG8_HUMAN	serologically defined colon cancer antigen 8	104					establishment of cell polarity|G2/M transition of mitotic cell cycle|tube formation	cell-cell junction|centriole|cytosol	protein binding				0	all_cancers(71;0.000545)|all_epithelial(71;0.000509)|all_lung(81;0.0821)|Ovarian(71;0.0919)|all_neural(11;0.101)|Breast(184;0.218)	all_cancers(173;0.00395)	all cancers(7;1.58e-07)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00392)	COAD - Colon adenocarcinoma(196;0.145)		TCATAGAGGTCATTAGAACAT	0.284													13	108					0	0	0.00136819	0	0
CNST	163882	broad.mit.edu	37	1	246810883	246810883	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:246810883C>T	uc001ibp.2	+	9	1758	c.1380C>T	c.(1378-1380)CTC>CTT	p.L460L	CNST_uc001ibo.3_Silent_p.L460L	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	460					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						GGAAAGAACTCCGTTTGCCAC	0.478											OREG0014367	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	55	155					0	0	0.000781405	0	0
ZNF695	57116	broad.mit.edu	37	1	247151033	247151033	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:247151033G>A	uc009xgu.2	-	4	929	c.784C>T	c.(784-786)CAT>TAT	p.H262Y	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_Intron|ZNF695_uc001ibx.2_Intron|ZNF695_uc001iby.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	262	C2H2-type 4; degenerate.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TTTTCAGTATGATTTTTCTCA	0.338													18	48					0	0	0.000958276	0	0
OR2C3	81472	broad.mit.edu	37	1	247695301	247695301	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:247695301C>T	uc009xgy.2	-	2	875	c.513G>A	c.(511-513)GGG>GGA	p.G171G	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TGCAATTGTTCCCACACAGCG	0.562													16	19					0	0	0.000422831	0	0
OR2G3	81469	broad.mit.edu	37	1	247769355	247769355	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:247769355C>T	uc010pyz.1	+	1	468	c.468C>T	c.(466-468)TCC>TCT	p.S156S		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGGCTAGTTCCCTAATCCATG	0.483													30	79					0	0	0.00178596	0	0
TRIM58	25893	broad.mit.edu	37	1	248039598	248039598	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:248039598C>T	uc001ido.2	+	6	1316	c.1268C>T	c.(1267-1269)TCA>TTA	p.S423L	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	423	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GGTGAAATTTCATTCTACAAT	0.438													64	147					0	0	0.000781405	0	0
OR2L1P	26247	broad.mit.edu	37	1	248154265	248154265	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:248154265G>A	uc001idv.1	+	1	697	c.453G>A	c.(451-453)GGG>GGA	p.G151G	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						CTGCAGAAGGGAGGAAGAAGG	0.478													26	47					0	0	0.00106085	0	0
OR2M5	127059	broad.mit.edu	37	1	248308965	248308965	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:248308965G>A	uc010pze.1	+	1	516	c.516G>A	c.(514-516)CGG>CGA	p.R172R		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	172	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GTGGGTCTCGGGAAATAGCCC	0.428													17	132					0	0	0.00152264	0	0
OR2M4	26245	broad.mit.edu	37	1	248402872	248402872	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:248402872C>T	uc010pzh.1	+	1	642	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TTTCAGTTATCATACTTTCCT	0.473													18	28					0	0	0.00121646	0	0
OR14C36	127066	broad.mit.edu	37	1	248512192	248512192	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:248512192G>A	uc010pzl.1	+	1	116	c.116G>A	c.(115-117)GGA>GAA	p.G39E		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ACTCTAATGGGAAACATCCTC	0.433													28	60					0	0	0.00178596	0	0
OR14C36	127066	broad.mit.edu	37	1	248512475	248512475	+	Silent	SNP	C	T	T	rs150366522		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:248512475C>T	uc010pzl.1	+	1	399	c.399C>T	c.(397-399)ATC>ATT	p.I133I		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ACCCTGTGATCGTGAACTCTC	0.507													15	33					0	0	0.000308642	0	0
OR2G6	391211	broad.mit.edu	37	1	248685667	248685667	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:248685667C>T	uc001ien.1	+	1	720	c.720C>T	c.(718-720)ACC>ACT	p.T240T		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCTTTGGGACCTGTTCGTCTC	0.458													13	78					0	0	0.00185496	0	0
OR2T27	403239	broad.mit.edu	37	1	248814116	248814116	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:248814116G>A	uc010pzo.1	-	1	70	c.70C>T	c.(70-72)CCC>TCC	p.P24S		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	24	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGAAGCCAGGGGAAACGGGCG	0.493													5	40					0	0	0.00198382	0	0
TUBB8	347688	broad.mit.edu	37	10	94621	94621	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:94621C>T	uc001ifi.2	-	3	211	c.211G>A	c.(211-213)GGC>AGC	p.G71S	TUBB8_uc009xhe.2_Intron|TUBB8_uc010pzs.1_5'UTR	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	71					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		TCCATGGTGCCCGGCTCCAGA	0.701													24	44					0	0	0.00128727	0	0
AKR1E2	83592	broad.mit.edu	37	10	4877986	4877986	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:4877986C>T	uc001ihi.2	+	4	559	c.444C>T	c.(442-444)TTC>TTT	p.F148F	AKR1E2_uc001ihl.1_RNA|AKR1E2_uc010qam.1_Silent_p.F109F|AKR1E2_uc001ihh.1_Silent_p.F148F|AKR1E2_uc009xhw.2_Silent_p.F148F|AKR1E2_uc001ihj.2_RNA|AKR1E2_uc001ihk.2_Silent_p.F148F	NM_001040177	NP_001035267	Q96JD6	AKCL2_HUMAN	aldo-keto reductase family 1, member E2	148						cytoplasm	1,5-anhydro-D-fructose reductase activity				0						ACACGGACTTCCTGGACACGT	0.567													24	47					0	0	0.00127121	0	0
AKR1C3	8644	broad.mit.edu	37	10	5139645	5139645	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:5139645G>A	uc001ihr.2	+	3	455	c.272G>A	c.(271-273)CGA>CAA	p.R91Q	AKR1C3_uc010qap.1_Missense_Mutation_p.R68Q|AKR1C3_uc010qaq.1_Missense_Mutation_p.R91Q|AKR1C3_uc001ihu.2_Missense_Mutation_p.R91Q	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	91					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	ACTTTTCATCGACCAGAGTTG	0.393													28	72					0	0	0.000692331	0	0
AKR1C3	8644	broad.mit.edu	37	10	5149666	5149666	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:5149666C>T	uc001ihr.2	+	9	1126	c.943C>T	c.(943-945)CCT>TCT	p.P315S	AKR1C3_uc010qap.1_Missense_Mutation_p.P292S|AKR1C3_uc001ihu.2_Missense_Mutation_p.P315S	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	315					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	TGCTAGCCACCCTAATTATCC	0.398													9	45					0	0	0.000442599	0	0
FBXO18	84893	broad.mit.edu	37	10	5948548	5948548	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:5948548C>T	uc001iis.2	+	3	801	c.706C>T	c.(706-708)CTG>TTG	p.L236L	FBXO18_uc001iir.2_Silent_p.L162L|FBXO18_uc009xig.2_Silent_p.L162L|FBXO18_uc001iit.2_Silent_p.L287L	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	236					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						CTATTGGAACCTGAGCTTGGT	0.448													23	78					0	0	0.000720815	0	0
IL15RA	3601	broad.mit.edu	37	10	6002431	6002431	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:6002431C>T	uc001iiv.2	-	4	564	c.482G>A	c.(481-483)GGA>GAA	p.G161E	IL15RA_uc001iiu.2_Missense_Mutation_p.G9E|IL15RA_uc010qau.1_Missense_Mutation_p.G128E|IL15RA_uc001iiw.2_Missense_Mutation_p.G125E|IL15RA_uc001iix.2_Missense_Mutation_p.G92E|IL15RA_uc001iiy.2_Missense_Mutation_p.G9E	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	161	Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						CTCTGTGGTTCCTGTGGAAGG	0.582													53	113					0	0	0.000781405	0	0
ITIH5	80760	broad.mit.edu	37	10	7608174	7608174	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:7608174C>T	uc001ijq.2	-	13	2425	c.2346G>A	c.(2344-2346)GGG>GGA	p.G782G	ITIH5_uc001ijp.2_Silent_p.G568G	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	782					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						GCCCCCAGCTCCCCACCACCA	0.567													7	15					0	0	0.00198382	0	0
ITIH5	80760	broad.mit.edu	37	10	7618721	7618721	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:7618721C>T	uc001ijq.2	-	10	1752	c.1673G>A	c.(1672-1674)GGA>GAA	p.G558E	ITIH5_uc001ijp.2_Missense_Mutation_p.G344E|ITIH5_uc001ijr.1_Missense_Mutation_p.G558E	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	558					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CCTGGGGCTTCCTGTGACATC	0.582													10	38					0	0	0.000673444	0	0
ITIH2	3698	broad.mit.edu	37	10	7774362	7774362	+	Missense_Mutation	SNP	C	T	T	rs150529114		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:7774362C>T	uc001ijs.2	+	14	1871	c.1709C>T	c.(1708-1710)TCG>TTG	p.S570L		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	570					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity	p.S570L(1)		ovary(1)|pancreas(1)|skin(1)	3						GATTTTCTATCGAAAGACAAG	0.488													19	46					0	0	0.00152264	0	0
PHYH	5264	broad.mit.edu	37	10	13333889	13333889	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:13333889G>A	uc001imf.2	-	5	526	c.438C>T	c.(436-438)TTC>TTT	p.F146F	PHYH_uc001ime.2_Silent_p.F46F|PHYH_uc001img.2_Silent_p.F127F	NM_006214	NP_006205	O14832	PAHX_HUMAN	phytanoyl-CoA 2-hydroxylase isoform a precursor	146					fatty acid alpha-oxidation|nervous system development	peroxisomal matrix	electron carrier activity|L-ascorbic acid binding|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|phytanoyl-CoA dioxygenase activity|protein binding				0		Ovarian(717;0.0448)			Antihemophilic Factor(DB00025)|Vitamin C(DB00126)	TAGGTCCAGTGAAGCACTCCA	0.333													15	100					0	0	0.000422831	0	0
BEND7	222389	broad.mit.edu	37	10	13481460	13481460	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:13481460C>T	uc001imm.2	-	9	1416	c.1119G>A	c.(1117-1119)GGG>GGA	p.G373G	BEND7_uc001iml.2_RNA	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	424							protein binding			ovary(1)|breast(1)	2						CCGCTGCACTCCCACCCGGCA	0.483													17	38					0	0	0.000566183	0	0
OLAH	55301	broad.mit.edu	37	10	15107691	15107691	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:15107691G>A	uc001inu.2	+	6	765	c.511G>A	c.(511-513)GAA>AAA	p.E171K	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.E224K	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	171					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						TGAAGCCAAGGAATTTGTGAA	0.388													18	32					0	0	0.00121646	0	0
CUBN	8029	broad.mit.edu	37	10	17113553	17113553	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:17113553G>A	uc001ioo.2	-	19	2549	c.2497C>T	c.(2497-2499)CCT>TCT	p.P833S		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	833	CUB 4.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TACACGTTAGGAAAAAAAGGC	0.418													5	48					0	0	0.000157383	0	0
SLC39A12	221074	broad.mit.edu	37	10	18250624	18250624	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:18250624G>A	uc001ipo.2	+	3	649	c.376G>A	c.(376-378)GAA>AAA	p.E126K	SLC39A12_uc001ipn.2_Missense_Mutation_p.E126K|SLC39A12_uc001ipp.2_Missense_Mutation_p.E126K|SLC39A12_uc010qck.1_5'UTR	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	126	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TATTCATCAGGAAGAGATCTG	0.383													14	69					0	0	0.000566183	0	0
SLC39A12	221074	broad.mit.edu	37	10	18270307	18270307	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:18270307G>A	uc001ipo.2	+	6	1264	c.991G>A	c.(991-993)GAG>AAG	p.E331K	SLC39A12_uc001ipn.2_Missense_Mutation_p.E331K|SLC39A12_uc001ipp.2_Missense_Mutation_p.E331K|SLC39A12_uc010qck.1_Missense_Mutation_p.E197K	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	331	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						CATTTCTAAGGAGGACTTTAA	0.483													20	39					0	0	0.00152264	0	0
NEBL	10529	broad.mit.edu	37	10	21120484	21120484	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:21120484T>A	uc001iqi.2	-	15	1875	c.1478A>T	c.(1477-1479)GAA>GTA	p.E493V	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	493	Nebulin 13.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CCCTTTAATTTCAGTCTCCAG	0.423													15	34					0	0	0.000422831	0	0
ARMC3	219681	broad.mit.edu	37	10	23319702	23319702	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:23319702G>A	uc001irm.3	+	17	2306	c.2223G>A	c.(2221-2223)AAG>AAA	p.K741K	ARMC3_uc010qcv.1_Silent_p.K734K|ARMC3_uc010qcw.1_Silent_p.K478K	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	741							binding				0						CCAATATTAAGGAACAGATTG	0.343													5	31					0	0	0.000602214	0	0
KIAA1217	56243	broad.mit.edu	37	10	24817000	24817000	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:24817000G>A	uc001iru.3	+	14	3437	c.3034G>A	c.(3034-3036)GGC>AGC	p.G1012S	KIAA1217_uc001irs.2_Missense_Mutation_p.G932S|KIAA1217_uc001irt.3_Missense_Mutation_p.G977S|KIAA1217_uc010qcy.1_Missense_Mutation_p.G977S|KIAA1217_uc010qcz.1_Missense_Mutation_p.G977S|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.G695S|KIAA1217_uc001irz.2_Missense_Mutation_p.G695S|KIAA1217_uc001irx.2_Missense_Mutation_p.G695S|KIAA1217_uc001iry.2_Missense_Mutation_p.G695S	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1012					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GCCAGCCACAGGCCCACTGCC	0.502													21	76					0	0	0.00127121	0	0
GPR158	57512	broad.mit.edu	37	10	25840010	25840010	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:25840010C>T	uc001isj.2	+	6	1570	c.1510C>T	c.(1510-1512)CAC>TAC	p.H504Y		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	504	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TCTCAAACTTCACAGGTATAT	0.403													6	46					0	0	0.00116845	0	0
GPR158	57512	broad.mit.edu	37	10	25887483	25887483	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:25887483G>A	uc001isj.2	+	11	2988	c.2928G>A	c.(2926-2928)ATG>ATA	p.M976I	GPR158_uc001isk.2_Missense_Mutation_p.M351I	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	976	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CTGGGATTATGAAACAACAAA	0.488													16	71					0	0	0.000308642	0	0
GPR158	57512	broad.mit.edu	37	10	25887976	25887976	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:25887976G>A	uc001isj.2	+	11	3481	c.3421G>A	c.(3421-3423)GAA>AAA	p.E1141K	GPR158_uc001isk.2_Missense_Mutation_p.E516K	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	1141	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AGGACACCAGGAAAAAAAGAC	0.453													14	41					0	0	0.00185496	0	0
MYO3A	53904	broad.mit.edu	37	10	26243928	26243928	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:26243928G>C	uc001isn.2	+	4	654	c.294G>C	c.(292-294)TTG>TTC	p.L98F	MYO3A_uc009xko.1_Missense_Mutation_p.L98F|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.L98F|MYO3A_uc001ism.2_Missense_Mutation_p.L98F	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	98	Protein kinase.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AGCTGTGGTTGGTTCTTGAGG	0.348													12	81					0	0	0.00185496	0	0
MYO3A	53904	broad.mit.edu	37	10	26500800	26500800	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:26500800G>A	uc001isn.2	+	35	5119	c.4759G>A	c.(4759-4761)GAG>AAG	p.E1587K	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.G602E	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1587					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CCCCGAGAAGGAGGAGGAGAG	0.642													10	34					0	0	0.000978159	0	0
GAD2	2572	broad.mit.edu	37	10	26558051	26558051	+	Silent	SNP	G	A	A	rs149629039	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:26558051G>A	uc001isp.2	+	9	1427	c.924G>A	c.(922-924)GGG>GGA	p.G308G	GAD2_uc001isq.2_Silent_p.G308G	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	308					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CTTCCAGAGGGAAAATGATTC	0.403													9	71					0	0	0.000673444	0	0
APBB1IP	54518	broad.mit.edu	37	10	26792173	26792173	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:26792173G>A	uc001iss.2	+	6	822	c.501G>A	c.(499-501)CTG>CTA	p.L167L	APBB1IP_uc009xks.1_Silent_p.L167L	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	167					blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						AGCTGGCGCTGGAAAAACTGA	0.413													9	78					0	0	0.000274275	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687498	27687498	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:27687498C>T	uc001itu.2	-	4	2147	c.2029G>A	c.(2029-2031)GAA>AAA	p.E677K		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	677					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GTACAGTTTTCCAGTTTTTGC	0.303													10	29					0	0	0.000978159	0	0
MTPAP	55149	broad.mit.edu	37	10	30615522	30615522	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:30615522G>A	uc001iva.3	-	5	886	c.823C>T	c.(823-825)CCT>TCT	p.P275S	MTPAP_uc001ivb.3_Missense_Mutation_p.P405S	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	275					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						CTTTCTGAAGGAACATTTTTC	0.348													33	95					0	0	0.0024448	0	0
Unknown	0	broad.mit.edu	37	10	30993566	30993566	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:30993566C>T	uc010qdx.1	+	7	1262	c.720C>T	c.(718-720)TTC>TTT	p.F240F						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		TCGGGCAGTTCCACGAGGGGG	0.537													23	33					0	0	0.00127121	0	0
Unknown	0	broad.mit.edu	37	10	30998303	30998303	+	Silent	SNP	C	T	T	rs113012238	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:30998303C>T	uc010qdx.1	+	8	1391	c.849C>T	c.(847-849)TTC>TTT	p.F283F						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		CCACGGAGTTCGTGTACCCTG	0.587													9	42					0	0	0.000978159	0	0
NRP1	8829	broad.mit.edu	37	10	33474637	33474637	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:33474637C>T	uc001iwx.3	-	15	2873	c.2350G>A	c.(2350-2352)GAA>AAA	p.E784K	NRP1_uc001iwv.3_Missense_Mutation_p.E784K|NRP1_uc009xlz.2_Missense_Mutation_p.E778K|NRP1_uc001iww.3_Missense_Mutation_p.E596K|NRP1_uc001iwy.3_Missense_Mutation_p.E777K	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	784	Extracellular (Potential).|MAM.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TTTCCGATTTCGCCCTCGAAA	0.393													16	35					0	0	0.00074312	0	0
PARD3	56288	broad.mit.edu	37	10	34620168	34620168	+	Missense_Mutation	SNP	G	A	A	rs139203609		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:34620168G>A	uc010qej.1	-	19	2719	c.2719C>T	c.(2719-2721)CCT>TCT	p.P907S	PARD3_uc010qek.1_Missense_Mutation_p.P904S|PARD3_uc010qel.1_Missense_Mutation_p.P907S|PARD3_uc010qem.1_Missense_Mutation_p.P891S|PARD3_uc010qen.1_Missense_Mutation_p.P861S|PARD3_uc010qeo.1_Missense_Mutation_p.P861S|PARD3_uc010qep.1_Missense_Mutation_p.P817S|PARD3_uc010qeq.1_Missense_Mutation_p.P832S|PARD3_uc001ixo.1_Missense_Mutation_p.P620S|PARD3_uc001ixp.1_Missense_Mutation_p.P738S|PARD3_uc001ixq.1_Missense_Mutation_p.P861S|PARD3_uc001ixr.1_Missense_Mutation_p.P904S|PARD3_uc001ixt.1_Missense_Mutation_p.P725S|PARD3_uc001ixu.1_Missense_Mutation_p.P849S|PARD3_uc001ixs.1_Missense_Mutation_p.P530S	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	907	Interacts with PRKCZ (By similarity).				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CGATGGAAAGGAATATCCCCA	0.532													6	43					0	0	0.00116845	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430756	37430756	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:37430756G>A	uc001iza.1	+	7	862	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	311						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACCCTTGGTGGAAAGAACACC	0.498													18	50					0	0	0.000566183	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37433934	37433934	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:37433934C>T	uc001iza.1	+	8	1336	c.1237C>T	c.(1237-1239)CCA>TCA	p.P413S		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	469						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TCAGAGGTTCCCATCAGAATC	0.249													29	71					0	0	0.000814825	0	0
ZNF248	57209	broad.mit.edu	37	10	38121341	38121341	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:38121341G>A	uc001izd.1	-	6	1441	c.942C>T	c.(940-942)ATC>ATT	p.I314I	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Silent_p.I314I	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTCCCTGATGGATAATGAAAG	0.363													19	45					0	0	0.00152264	0	0
BMS1	9790	broad.mit.edu	37	10	43318651	43318651	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:43318651A>G	uc001jaj.2	+	20	3576	c.3218A>G	c.(3217-3219)AAA>AGA	p.K1073R		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1073					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						CAGATCAAGAAAGCACTCCGA	0.498													4	88					0	0	0.000602214	0	0
RET	5979	broad.mit.edu	37	10	43613844	43613844	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:43613844C>T	uc001jal.2	+	13	2498	c.2308C>T	c.(2308-2310)CGA>TGA	p.R770*	RET_uc001jak.1_Nonsense_Mutation_p.R770*|RET_uc010qez.1_Nonsense_Mutation_p.R516*	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	770	Protein kinase.|Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	GAGTGAGCTGCGAGACCTGCT	0.562		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				7	22					0	0	0.000157383	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285242	44285242	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:44285242C>T	uc010qfe.1	-	1	624	c.594G>A	c.(592-594)GTG>GTA	p.V198V		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						GGGCCTTTTTCACTTCACAGT	0.408													8	37					0	0	0.000157383	0	0
LOC642826	642826	broad.mit.edu	37	10	47193377	47193377	+	RNA	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:47193377T>C	uc001jei.2	-	16		c.2140A>G			uc009xnf.2_Missense_Mutation_p.M248V					Homo sapiens cDNA, FLJ99065.												0						GACCAGCGCATGGACAGCTTG	0.582													5	33					0	0	0.00116845	0	0
FAM21B	55747	broad.mit.edu	37	10	47915945	47915945	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:47915945C>T	uc009xni.2	+	15	1352	c.1352C>T	c.(1351-1353)TCA>TTA	p.S451L	FAM21B_uc001jep.3_Missense_Mutation_p.S346L	NM_018232	NP_060702	Q5SNT6	FA21B_HUMAN	hypothetical protein LOC55747	451					retrograde transport, endosome to Golgi	early endosome membrane|WASH complex				ovary(1)	1						GGCTTATTTTCAGATGAGGAG	0.418													8	79					0	0	0.00185496	0	0
RBP3	5949	broad.mit.edu	37	10	48389378	48389378	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:48389378C>T	uc001jez.2	-	1	1614	c.1500G>A	c.(1498-1500)GAG>GAA	p.E500E		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	500	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CGGGGCCGGCCTCAGGGCCCT	0.652													7	35					0	0	0.000442599	0	0
C10orf71	118461	broad.mit.edu	37	10	50531439	50531439	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:50531439C>T	uc010qgp.1	+	3	1188	c.849C>T	c.(847-849)CAC>CAT	p.H283H		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	283											0						GGAATGCCCACCAACCAAAGC	0.537													6	22					0	0	0.00116845	0	0
CHAT	1103	broad.mit.edu	37	10	50854598	50854598	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:50854598C>T	uc001jhz.2	+	8	1312	c.1159C>T	c.(1159-1161)CTT>TTT	p.L387F	CHAT_uc001jhv.1_Missense_Mutation_p.L269F|CHAT_uc001jhx.1_Missense_Mutation_p.L269F|CHAT_uc001jhy.1_Missense_Mutation_p.L269F|CHAT_uc001jia.2_Missense_Mutation_p.L269F|CHAT_uc010qgs.1_Missense_Mutation_p.L269F	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	387					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	CTGCATCTGCCTTGTATGCCT	0.647													17	87					0	0	0.00121646	0	0
OGDHL	55753	broad.mit.edu	37	10	50959894	50959894	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:50959894G>A	uc001jie.2	-	6	870	c.728C>T	c.(727-729)GCC>GTC	p.A243V	OGDHL_uc009xog.2_Missense_Mutation_p.A270V|OGDHL_uc010qgt.1_Missense_Mutation_p.A186V|OGDHL_uc010qgu.1_Missense_Mutation_p.A34V|OGDHL_uc009xoh.2_Missense_Mutation_p.A34V	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	243					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						CACTAGCCGGGCCAGCAGGGT	0.607													21	62					0	0	0.000586117	0	0
A1CF	29974	broad.mit.edu	37	10	52603746	52603746	+	Splice_Site	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:52603746A>C	uc001jjj.2	-	4	422	c.234_splice	c.e4+1	p.K78_splice	A1CF_uc010qhn.1_Splice_Site_p.K86_splice|A1CF_uc001jji.2_Splice_Site_p.K78_splice|A1CF_uc001jjh.2_Splice_Site_p.K86_splice|A1CF_uc010qho.1_Splice_Site_p.K86_splice|A1CF_uc009xov.2_Splice_Site_p.K78_splice|A1CF_uc001jjk.1_Splice_Site_p.K78_splice	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2						cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						ATTTGGACTCACTTTTTCACA	0.393													21	121					0	0	0.00278032	0	0
MBL2	4153	broad.mit.edu	37	10	54531277	54531277	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:54531277G>A	uc001jjt.2	-	1	184	c.119C>T	c.(118-120)TCT>TTT	p.S40F		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	40	Cys-rich.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						GATGCCTGGAGAGCTACAGGC	0.552													12	33					0	0	0.00244969	0	0
PCDH15	65217	broad.mit.edu	37	10	55568855	55568855	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:55568855C>T	uc010qhs.1	-	37	5365	c.4970G>A	c.(4969-4971)GGA>GAA	p.G1657E	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.G1650E|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGCTTTTTCTCCTTCTGACTC	0.428										HNSCC(58;0.16)			7	32					0	0	0.000157383	0	0
PCDH15	65217	broad.mit.edu	37	10	56138635	56138635	+	Silent	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:56138635A>T	uc001jju.1	-	4	620	c.225T>A	c.(223-225)CTT>CTA	p.L75L	PCDH15_uc010qhq.1_Silent_p.L80L|PCDH15_uc010qhr.1_Silent_p.L75L|PCDH15_uc010qhs.1_Silent_p.L80L|PCDH15_uc010qht.1_Silent_p.L75L|PCDH15_uc010qhu.1_Silent_p.L75L|PCDH15_uc001jjv.1_Silent_p.L53L|PCDH15_uc010qhv.1_Silent_p.L75L|PCDH15_uc010qhw.1_Silent_p.L75L|PCDH15_uc010qhx.1_Silent_p.L75L|PCDH15_uc010qhy.1_Silent_p.L80L|PCDH15_uc010qhz.1_Silent_p.L75L|PCDH15_uc010qia.1_Silent_p.L53L|PCDH15_uc010qib.1_Silent_p.L53L|PCDH15_uc001jjw.2_Silent_p.L75L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	75	Cadherin 1.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CCTTTAAAGAAAGTTCTATGG	0.428										HNSCC(58;0.16)			15	87					0	0	0.000566183	0	0
FAM13C	220965	broad.mit.edu	37	10	61112191	61112191	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:61112191C>T	uc001jkn.2	-	4	297	c.163G>A	c.(163-165)GTA>ATA	p.V55I	FAM13C_uc001jko.2_Missense_Mutation_p.V55I|FAM13C_uc010qid.1_5'UTR|FAM13C_uc010qie.1_5'UTR|FAM13C_uc010qif.1_Missense_Mutation_p.V77I|FAM13C_uc001jkp.2_5'UTR	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	55										ovary(2)	2						TGCTCTTCTACCAGAGCCCCT	0.498													4	16					0	0	0.000602214	0	0
ANK3	288	broad.mit.edu	37	10	61830130	61830130	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:61830130G>A	uc001jky.2	-	37	10701	c.10509C>T	c.(10507-10509)TTC>TTT	p.F3503F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3503					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTTCCAGTGTGAAGAACTGGG	0.433													6	47					0	0	0.00198382	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62670703	62670703	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:62670703G>A	uc001jli.2	-	5	676	c.238C>T	c.(238-240)CTC>TTC	p.L80F	RHOBTB1_uc001jlh.2_Missense_Mutation_p.L80F|RHOBTB1_uc001jlj.2_Missense_Mutation_p.L80F|RHOBTB1_uc001jlk.2_Missense_Mutation_p.L80F|RHOBTB1_uc009xpe.1_Missense_Mutation_p.L80F|RHOBTB1_uc001jlm.2_Missense_Mutation_p.L80F	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	80	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					CAAAGCCTGAGAGAAACACTC	0.483													6	39					0	0	0.00198382	0	0
CTNNA3	29119	broad.mit.edu	37	10	68526055	68526055	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:68526055C>T	uc009xpn.1	-	9	1371	c.1248G>A	c.(1246-1248)GCG>GCA	p.A416A	CTNNA3_uc001jmw.2_Silent_p.A416A|CTNNA3_uc001jmx.3_Silent_p.A416A	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	416					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CATGAAATATCGCAGCATATT	0.433													16	78					0	0	0.000566183	0	0
TSPAN15	23555	broad.mit.edu	37	10	71243615	71243615	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:71243615C>T	uc001jpo.1	+	2	390	c.265C>T	c.(265-267)CTG>TTG	p.L89L		NM_012339	NP_036471	O95858	TSN15_HUMAN	transmembrane 4 superfamily member 15	89	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction					0						CCGTGACAACCTGTACCTTCT	0.612													4	43					0	0	0.000602214	0	0
CDH23	64072	broad.mit.edu	37	10	73553238	73553238	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:73553238G>A	uc001jrx.3	+	46	6930	c.6553G>A	c.(6553-6555)GAG>AAG	p.E2185K	CDH23_uc001jsg.3_5'Flank|CDH23_uc001jsh.3_5'Flank	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2185	Cadherin 21.|Extracellular (Potential).			EFLNPIQTVSVLESAEPGTVIANITAIDHDLNPKLEYHIVG IVAKDDTDRLVPNQEDAFAVNIN -> ASWEGQSHVTQAYE EAVGPPQPQVPDSTGDRHPLWGLGGFGQEHPWEGQILGGSS QAEPGLVWS (in Ref. 6; BAB61902).	calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GAGCGTGCTGGAGTCGGCTGA	0.557													12	52					0	0	0.00244969	0	0
DNAJB12	54788	broad.mit.edu	37	10	74096383	74096383	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:74096383G>A	uc010qjv.1	-	7	1157	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	DNAJB12_uc001jsz.2_Missense_Mutation_p.S336F|DNAJB12_uc001jta.2_Missense_Mutation_p.S336F	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	302					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						GTACTCTTCGGAGAAAGTGTC	0.542													26	102					0	0	0.00127121	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74695376	74695376	+	Silent	SNP	C	T	T	rs140354458		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:74695376C>T	uc001jtf.1	-	4	654	c.587G>A	c.(586-588)TGA>TAA	p.*196*	PLA2G12B_uc009xqt.1_Silent_p.*106*|PLA2G12B_uc010qjz.1_Silent_p.*195*	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	196					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					ACTTCTTCCTCATAACTCTTC	0.502													28	106					0	0	0.00178596	0	0
CAMK2G	818	broad.mit.edu	37	10	75576769	75576769	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:75576769G>A	uc001jvv.1	-	19	1550	c.1426C>T	c.(1426-1428)CGT>TGT	p.R476C	CAMK2G_uc001jvm.1_Intron|CAMK2G_uc001jvo.1_Intron|CAMK2G_uc001jvq.1_Intron|CAMK2G_uc001jvr.1_Intron|CAMK2G_uc001jvp.1_Intron|CAMK2G_uc001jvs.1_Intron|CAMK2G_uc001jvt.1_Intron|CAMK2G_uc001jvu.1_Intron|CAMK2G_uc009xrp.1_Intron	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	Error:Variant_position_missing_in_Q13555_after_alignment					insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					TCAGCAGCACGAACCCACTCA	0.507													35	145					0	0	0.00195071	0	0
SAMD8	142891	broad.mit.edu	37	10	76910469	76910469	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:76910469C>T	uc001jwx.1	+	2	286	c.183C>T	c.(181-183)GTC>GTT	p.V61V	SAMD8_uc001jwy.1_Silent_p.V61V	NM_144660	NP_653261	Q96LT4	SAMD8_HUMAN	sterile alpha motif domain containing 8	61	SAM.				sphingomyelin biosynthetic process	integral to membrane					0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					AAATCAAAGTCTTAGGGGACA	0.393													17	68					0	0	0.00152264	0	0
POLR3A	11128	broad.mit.edu	37	10	79785499	79785499	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:79785499G>A	uc001jzn.2	-	3	293	c.199C>T	c.(199-201)CGT>TGT	p.R67C		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	67					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			TCACATGGACGATCCTTCTCA	0.502													13	63					0	0	0.00244969	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81049619	81049620	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:81049619_81049620GG>AA	uc001kaf.2	+	9	1085_1086	c.513_514GG>AA	c.(511-516)TGGGGA>TGAAGA	p.171_172WG>*R	ZMIZ1_uc001kag.2_Nonsense_Mutation_p.47_48WG>*R|ZMIZ1_uc001kah.1_Nonsense_Mutation_p.47_48WG>*R	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	171_172					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CCACGGTTTGGGGAGTAACCAA	0.589													12	73					0	0	6.4e-05	0	0
C10orf58	84293	broad.mit.edu	37	10	82180315	82180315	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:82180315T>G	uc001kcc.3	+	2	252	c.92T>G	c.(91-93)CTT>CGT	p.L31R	C10orf58_uc001kcd.3_Missense_Mutation_p.L20R|C10orf58_uc001kce.3_Missense_Mutation_p.L31R|C10orf58_uc001kcf.3_Missense_Mutation_p.L31R	NM_032333	NP_115709	Q9BRX8	CJ058_HUMAN	hypothetical protein LOC84293 precursor	31						extracellular region					0			Colorectal(32;0.229)			GCATTGCTGCTTGCCAACACA	0.552													10	46					0	0	0.000673444	0	0
SH2D4B	387694	broad.mit.edu	37	10	82330031	82330031	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:82330031G>A	uc001kck.1	+	2	736	c.306G>A	c.(304-306)GAG>GAA	p.E102E	SH2D4B_uc001kcl.1_Silent_p.E53E	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1	101	Glu-rich.										0			Colorectal(32;0.229)			TGATTGCAGAGAGGGCGCGGC	0.597													21	77					0	0	0.00188189	0	0
GRID1	2894	broad.mit.edu	37	10	87966146	87966146	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:87966146G>A	uc001kdl.1	-	3	596	c.495C>T	c.(493-495)TTC>TTT	p.F165F	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	165	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AGAACATGACGAACTTCTGCC	0.617										Multiple Myeloma(13;0.14)			8	34					0	0	0.000274275	0	0
PTEN	5728	broad.mit.edu	37	10	89624249	89624249	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:89624249T>C	uc001kfb.2	+	2	1054	c.23T>C	c.(22-24)ATC>ACC	p.I8T	KILLIN_uc009xti.2_5'Flank	NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	8					activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.?(13)|p.0?(12)|p.I8_R14>LRLICIF(1)|p.A3fs*14(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		ATCAAAGAGATCGTTAGCAGA	0.488		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			29	145					0	0	0.00148497	0	0
LIPJ	142910	broad.mit.edu	37	10	90362355	90362355	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:90362355C>T	uc001kff.2	+	9	1060	c.746C>T	c.(745-747)TCA>TTA	p.S249L		NM_001010939	NP_001010939	Q5W064	LIPJ_HUMAN	lipase, family member J	249					lipid catabolic process		hydrolase activity			ovary(1)	1		all_cancers(4;2.79e-10)|Prostate(4;1.68e-15)|all_epithelial(4;1.43e-09)|Colorectal(252;0.0381)|Breast(4;0.141)|Melanoma(5;0.2)|all_hematologic(4;0.222)		Colorectal(12;1.02e-05)|COAD - Colon adenocarcinoma(12;1.54e-05)		GTGTATTTTTCACACAACCCA	0.308													9	48					0	0	0.000673444	0	0
PANK1	53354	broad.mit.edu	37	10	91371750	91371750	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:91371750G>A	uc001kgp.1	-	2	915	c.759C>T	c.(757-759)TTC>TTT	p.F253F	PANK1_uc001kgn.1_Silent_p.F28F|PANK1_uc001kgo.1_Silent_p.F28F|PANK1_uc009xtu.1_Silent_p.F55F	NM_148977	NP_683878	Q8TE04	PANK1_HUMAN	pantothenate kinase 1 isoform alpha	253					coenzyme A biosynthetic process|pantothenate metabolic process	cytosol|nucleus	ATP binding|pantothenate kinase activity				0					Bezafibrate(DB01393)	CCTTCGGCTCGAAATACACCA	0.458													19	77					0	0	0.00188189	0	0
ANKRD1	27063	broad.mit.edu	37	10	92677504	92677504	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:92677504G>A	uc001khe.1	-	5	785	c.537C>T	c.(535-537)ATC>ATT	p.I179I		NM_014391	NP_055206	Q15327	ANKR1_HUMAN	cardiac ankyrin repeat protein	179	ANK 1.				cellular lipid metabolic process|defense response|signal transduction		DNA binding				0		Colorectal(252;0.0475)				CACGGAATTCGATCTGGGCTC	0.418													14	36					0	0	0.000308642	0	0
PCGF5	84333	broad.mit.edu	37	10	93038033	93038033	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:93038033C>T	uc001khh.2	+	10	978	c.731C>T	c.(730-732)CCT>CTT	p.P244L	PCGF5_uc010qnk.1_Missense_Mutation_p.P244L|PCGF5_uc001khi.2_Missense_Mutation_p.P244L	NM_032373	NP_115749	Q86SE9	PCGF5_HUMAN	polycomb group ring finger 5	244					regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|PcG protein complex	zinc ion binding			lung(1)	1						TAGTCATACCCTATGGTACTG	0.343													6	32					0	0	0.00198382	0	0
EXOC6	54536	broad.mit.edu	37	10	94818100	94818101	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:94818100_94818101CC>AA	uc001kig.2	+	22	2469_2470	c.2403_2404CC>AA	c.(2401-2406)TCCCAG>TCAAAG	p.Q802K	EXOC6_uc010qnr.1_Missense_Mutation_p.Q818K|EXOC6_uc001kie.2_Missense_Mutation_p.Q797K|EXOC6_uc009xub.2_Missense_Mutation_p.Q801K|EXOC6_uc009xuc.2_Missense_Mutation_p.Q699K|EXOC6_uc001kih.2_RNA|EXOC6_uc001kii.2_Missense_Mutation_p.Q376K|CYP26C1_uc010qns.1_5'Flank|CYP26C1_uc009xud.2_5'Flank	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	802					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				ATGGTATGTCCCAGCACATGTA	0.396													10	312					0	0	6.4e-05	0	0
GPR120	338557	broad.mit.edu	37	10	95335964	95335964	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:95335964C>A	uc010qnt.1	+	2	740	c.684C>A	c.(682-684)TCC>TCA	p.S228S	GPR120_uc010qnu.1_Silent_p.S228S	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	228	Cytoplasmic (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				TCAGTTACTCCAAAATTTTAC	0.388													8	138					0.000442599	0.00155673	0.000442599	1	0
PLCE1	51196	broad.mit.edu	37	10	96006226	96006226	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:96006226G>A	uc001kjk.2	+	8	3578	c.2944G>A	c.(2944-2946)GAC>AAC	p.D982N	PLCE1_uc010qnx.1_Missense_Mutation_p.D982N|PLCE1_uc001kjm.2_Missense_Mutation_p.D674N	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	982					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TCAGACCACAGACAACAGATT	0.453													15	71					0	0	0.000566183	0	0
NOC3L	64318	broad.mit.edu	37	10	96097619	96097619	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:96097619G>A	uc001kjq.1	-	19	2192	c.2104C>T	c.(2104-2106)CCC>TCC	p.P702S		NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	702						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				TGCACTATGGGATGATAATGC	0.433													15	67					0	0	0.000958276	0	0
TBC1D12	23232	broad.mit.edu	37	10	96291080	96291080	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:96291080G>A	uc001kjr.2	+	12	2307	c.2122G>A	c.(2122-2124)GAA>AAA	p.E708K		NM_015188	NP_056003	O60347	TBC12_HUMAN	TBC1 domain family, member 12	708						intracellular	Rab GTPase activator activity				0		Colorectal(252;0.0429)				CCGATTATATGAAGATATTCT	0.393													12	74					0	0	0.000978159	0	0
HELLS	3070	broad.mit.edu	37	10	96352063	96352063	+	Silent	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:96352063T>G	uc001kjt.2	+	16	1950	c.1845T>G	c.(1843-1845)GGT>GGG	p.G615G	HELLS_uc001kjs.2_Silent_p.G599G|HELLS_uc009xul.2_Silent_p.G517G|HELLS_uc009xum.2_Silent_p.G485G|HELLS_uc009xun.2_Silent_p.G491G|HELLS_uc009xuo.2_Silent_p.G661G|HELLS_uc001kju.2_Silent_p.G254G|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Silent_p.G477G|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	615	Helicase C-terminal.				cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		AAAAAAGAGGTCACAAGGTGG	0.323													10	55					0	0	0.000978159	0	0
CYP2C19	1557	broad.mit.edu	37	10	96580354	96580354	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:96580354A>C	uc010qnz.1	+	6	921	c.921A>C	c.(919-921)AGA>AGC	p.R307S	CYP2C19_uc010qny.1_Missense_Mutation_p.R285S	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	307					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CAACCCTGAGATATGCTCTCC	0.443													22	96					0	0	0.000586117	0	0
CYP2C9	1559	broad.mit.edu	37	10	96709029	96709029	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:96709029G>A	uc001kka.3	+	5	832	c.807G>A	c.(805-807)ATG>ATA	p.M269I	CYP2C9_uc009xut.2_Missense_Mutation_p.M269I	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	269					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GCTTCCTGATGAAAATGGAGA	0.323													7	32					0	0	0.000274275	0	0
PDLIM1	9124	broad.mit.edu	37	10	97006972	97006972	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:97006972C>T	uc001kkh.2	-	5	794	c.685G>A	c.(685-687)GGG>AGG	p.G229R	PDLIM1_uc001kki.2_Missense_Mutation_p.G229R|PDLIM1_uc009xuv.2_Missense_Mutation_p.V229M|PDLIM1_uc001kkj.1_Missense_Mutation_p.G229R	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	229					response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		AGCTGATTACCTTTTTCTTCA	0.473											OREG0020387	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	94					0	0	0.000958276	0	0
ENTPD1	953	broad.mit.edu	37	10	97607227	97607227	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:97607227G>A	uc001klh.3	+	7	1162	c.838G>A	c.(838-840)GAC>AAC	p.D280N	ENTPD1_uc001kli.3_Missense_Mutation_p.D287N|uc001klg.1_RNA|ENTPD1_uc010qoj.1_Missense_Mutation_p.D292N|ENTPD1_uc010qok.1_Missense_Mutation_p.D172N|ENTPD1_uc010qol.1_Missense_Mutation_p.D172N|ENTPD1_uc010qom.1_Intron|ENTPD1_uc010qon.1_Missense_Mutation_p.D142N|ENTPD1_uc009xva.2_Missense_Mutation_p.D142N|ENTPD1_uc009xuz.2_Intron	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	280	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		AATTCTCAGGGACCCATGCTT	0.408													11	38					0	0	0.000978159	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98386522	98386522	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:98386522C>T	uc001kmq.2	-	10	1740	c.1612G>A	c.(1612-1614)GAG>AAG	p.E538K	PIK3AP1_uc001kmo.2_Missense_Mutation_p.E137K|PIK3AP1_uc001kmp.2_Missense_Mutation_p.E360K	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	538						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GCAGTGGTCTCTGGTCTGGGC	0.537													8	34					0	0	0.000978159	0	0
SLIT1	6585	broad.mit.edu	37	10	98808855	98808855	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:98808855A>T	uc001kmw.2	-	14	1574	c.1322T>A	c.(1321-1323)TTC>TAC	p.F441Y	SLIT1_uc009xvh.1_Missense_Mutation_p.F451Y	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	441	LRRCT 2.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GTCGCAAATGAAAGGGTTCTG	0.617													16	49					0	0	0.00121646	0	0
SLIT1	6585	broad.mit.edu	37	10	98817007	98817007	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:98817007G>A	uc001kmw.2	-	12	1369	c.1117C>T	c.(1117-1119)CCC>TCC	p.P373S	SLIT1_uc009xvh.1_Missense_Mutation_p.P383S	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	373	LRR 9.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		ACACCACGGGGGAGGTCTGTG	0.567													5	32					0	0	0.00116845	0	0
GOLGA7B	401647	broad.mit.edu	37	10	99619278	99619278	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:99619278G>A	uc001kos.2	+	2	141	c.76G>A	c.(76-78)GAC>AAC	p.D26N		NM_001010917	NP_001010917	Q2TAP0	GOG7B_HUMAN	golgi autoantigen, golgin subfamily a, 7B	26						Golgi membrane					0						TATCCAGAGAGACTACAGCGA	0.562													11	37					0	0	0.00185496	0	0
PKD2L1	9033	broad.mit.edu	37	10	102056964	102056964	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:102056964G>A	uc001kqx.1	-	6	1341	c.958C>T	c.(958-960)CTG>TTG	p.L320L	PKD2L1_uc009xwm.1_Silent_p.L273L	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	320	Helical; (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		TCCACCACCAGCCTATAGGGG	0.582													9	28					0	0	0.000274275	0	0
MGEA5	10724	broad.mit.edu	37	10	103557835	103557835	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:103557835G>A	uc001ktv.2	-	10	2329	c.1886C>T	c.(1885-1887)TCC>TTC	p.S629F	MGEA5_uc001ktu.2_RNA|MGEA5_uc010qqe.1_Missense_Mutation_p.S576F|MGEA5_uc009xws.2_Missense_Mutation_p.S576F|MGEA5_uc001ktw.2_Missense_Mutation_p.S629F	NM_012215	NP_036347	O60502	NCOAT_HUMAN	meningioma expressed antigen 5 (hyaluronidase)	629	Histone acetyltransferase activity (By similarity).				glycoprotein catabolic process	cytoplasm|nucleus	histone acetyltransferase activity|hyalurononglucosaminidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.207)		Epithelial(162;4.67e-09)|all cancers(201;2.54e-07)		GGCACAATTGGAGAGCCGAGT	0.403													12	74					0	0	0.00136819	0	0
KCNIP2	30819	broad.mit.edu	37	10	103587676	103587676	+	Silent	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:103587676G>T	uc001kub.2	-	8	1024	c.672C>A	c.(670-672)GCC>GCA	p.A224A	KCNIP2_uc010qqg.1_Silent_p.A168A|KCNIP2_uc001ktx.2_RNA|KCNIP2_uc001kty.2_Silent_p.A122A|KCNIP2_uc001ktz.2_Silent_p.A179A|KCNIP2_uc009xwu.2_Silent_p.A174A|KCNIP2_uc009xwv.2_Silent_p.A170A|KCNIP2_uc001kuc.2_Silent_p.A239A|KCNIP2_uc001kue.2_Silent_p.A206A|KCNIP2_uc001kud.2_Silent_p.A181A|KCNIP2_uc001kuf.2_Silent_p.A174A|KCNIP2_uc001kua.2_Silent_p.A155A|KCNIP2_uc009xww.2_RNA|KCNIP2_uc010qqh.1_Silent_p.A179A|KCNIP2_uc010qqi.1_Silent_p.A138A	NM_173191	NP_775283	Q9NS61	KCIP2_HUMAN	Kv channel interacting protein 2 isoform 2	224	EF-hand 4.			A -> P (in Ref. 2; BAA96740/BAA96741).	clustering of voltage-gated potassium channels|detection of calcium ion|muscle contraction|regulation of heart contraction|signal transduction|synaptic transmission	cytoplasm|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|calcium ion binding|ER retention sequence binding|identical protein binding|protein N-terminus binding				0		Colorectal(252;0.122)		Epithelial(162;4.93e-09)|all cancers(201;2.63e-07)		GTTCCCTTGGGGCCTCCTCCC	0.552													7	83					2.17888e-05	7.68496e-05	0.000442599	1	0
PSD	5662	broad.mit.edu	37	10	104175873	104175873	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:104175873C>T	uc001kvg.1	-	3	1185	c.658G>A	c.(658-660)GAT>AAT	p.D220N	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.D220N	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	220					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GACCAGGTATCCCCCTGAGCC	0.398													4	16					0	0	0.000602214	0	0
ACSL5	51703	broad.mit.edu	37	10	114158669	114158669	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:114158669G>A	uc001kzs.2	+	3	308	c.167G>A	c.(166-168)CGG>CAG	p.R56Q	ACSL5_uc001kzt.2_Missense_Mutation_p.R56Q|ACSL5_uc001kzu.2_Missense_Mutation_p.R112Q|ACSL5_uc009xxz.2_Missense_Mutation_p.R56Q	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	56	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		GGAGGAGCACGGAAGGGGGTT	0.443													8	70					0	0	0.000442599	0	0
NRAP	4892	broad.mit.edu	37	10	115372085	115372085	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:115372085G>A	uc001laj.2	-	30	3570	c.3406C>T	c.(3406-3408)CAG>TAG	p.Q1136*	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Nonsense_Mutation_p.Q1101*|NRAP_uc001lal.3_Nonsense_Mutation_p.Q1136*	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1136	Nebulin 29.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TTGTAGTCCTGATTGCTGGCC	0.532													11	51					0	0	0.000673444	0	0
NHLRC2	374354	broad.mit.edu	37	10	115618409	115618409	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:115618409C>T	uc001lax.1	+	2	513	c.301C>T	c.(301-303)CAT>TAT	p.H101Y		NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	101	Thioredoxin.				cell redox homeostasis					ovary(1)	1				Epithelial(162;0.017)|all cancers(201;0.0187)		GCCTGATCTCCATGCATTAGA	0.393													24	123					0	0	0.00278032	0	0
PNLIP	5406	broad.mit.edu	37	10	118320026	118320026	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:118320026G>A	uc001lcm.2	+	11	1202	c.1159G>A	c.(1159-1161)GAA>AAA	p.E387K		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	387	PLAT.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	TAAGCAGTATGAAATTTTCAA	0.239													10	31					0	0	0.000442599	0	0
KCNK18	338567	broad.mit.edu	37	10	118969466	118969466	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:118969466G>A	uc010qsr.1	+	3	811	c.811G>A	c.(811-813)GAA>AAA	p.E271K		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	271	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		CAACCTGGATGAAGTTGGACA	0.532													19	56					0	0	0.00229938	0	0
BAG3	9531	broad.mit.edu	37	10	121431837	121431837	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:121431837G>A	uc001lem.2	+	3	884	c.578G>A	c.(577-579)AGG>AAG	p.R193K	BAG3_uc001lel.2_Missense_Mutation_p.R193K	NM_004281	NP_004272	O95817	BAG3_HUMAN	BCL2-associated athanogene 3	193					anti-apoptosis|apoptosis|protein folding	cytosol				ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		TCCTCCGGCAGGAGCAGCCTG	0.642													7	25					0	0	0.00198382	0	0
INPP5F	22876	broad.mit.edu	37	10	121565915	121565915	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:121565915C>T	uc001leo.2	+	12	1529	c.1363C>T	c.(1363-1365)CGT>TGT	p.R455C		NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	455	SAC.						phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		AGGGATTTTTCGTGTTAATTG	0.378													5	15					0	0	0.000602214	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122348819	122348819	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:122348819C>T	uc001lev.1	+	7	973	c.621C>T	c.(619-621)TCC>TCT	p.S207S	PPAPDC1A_uc009xzl.1_Silent_p.S144S|PPAPDC1A_uc001lew.1_3'UTR|PPAPDC1A_uc001lex.1_Missense_Mutation_p.P57L|PPAPDC1A_uc001ley.1_Silent_p.S86S	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	207	Helical; (Potential).				phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		GCCTAGATTCCTTTGTGGGTG	0.443													31	150					0	0	0.000692331	0	0
TACC2	10579	broad.mit.edu	37	10	123843518	123843518	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:123843518G>T	uc001lfv.2	+	4	1863	c.1503G>T	c.(1501-1503)TTG>TTT	p.L501F	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.L501F|TACC2_uc010qtv.1_Missense_Mutation_p.L501F	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	501	Pro-rich.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GAGAGCACTTGAACACGGAGC	0.602													17	63					2.48551e-13	8.81902e-13	0.000566183	1	0
TACC2	10579	broad.mit.edu	37	10	123846454	123846454	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:123846454G>A	uc001lfv.2	+	4	4799	c.4439G>A	c.(4438-4440)GGA>GAA	p.G1480E	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.G1480E|TACC2_uc010qtv.1_Missense_Mutation_p.G1480E	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1480						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CAGTTGGCTGGAGAGGCTGAG	0.592													5	37					0	0	0.000602214	0	0
DMBT1	1755	broad.mit.edu	37	10	124345774	124345774	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:124345774C>T	uc001lgk.1	+	16	1764	c.1658C>T	c.(1657-1659)TCA>TTA	p.S553L	DMBT1_uc001lgl.1_Missense_Mutation_p.S543L|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.S553L|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	553	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGTCAGGGCTCAGGACCCATT	0.592													26	109					0	0	0.000720815	0	0
DMBT1	1755	broad.mit.edu	37	10	124390770	124390770	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:124390770C>T	uc001lgk.1	+	46	6038	c.5932C>T	c.(5932-5934)CGT>TGT	p.R1978C	DMBT1_uc001lgl.1_Missense_Mutation_p.R1968C|DMBT1_uc001lgm.1_Missense_Mutation_p.R1350C|DMBT1_uc009xzz.1_Missense_Mutation_p.R1978C|DMBT1_uc010qtx.1_Missense_Mutation_p.R698C|DMBT1_uc009yab.1_Missense_Mutation_p.R681C|DMBT1_uc009yac.1_Missense_Mutation_p.R272C	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1978	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTGTAATCATCGTGAAGATGC	0.542													10	85					0	0	0.000978159	0	0
DMBT1	1755	broad.mit.edu	37	10	124392396	124392396	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:124392396C>T	uc001lgk.1	+	48	6106	c.6000C>T	c.(5998-6000)ACC>ACT	p.T2000T	DMBT1_uc001lgl.1_Silent_p.T1990T|DMBT1_uc001lgm.1_Silent_p.T1372T|DMBT1_uc009xzz.1_Silent_p.T2000T|DMBT1_uc010qtx.1_Silent_p.T720T|DMBT1_uc009yab.1_Silent_p.T703T|DMBT1_uc009yac.1_Silent_p.T294T	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2000					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCAACATCACCCGTCCAAACA	0.483													4	16					0	0	0.000602214	0	0
C10orf120	399814	broad.mit.edu	37	10	124457679	124457679	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:124457679G>A	uc001lgn.2	-	3	610	c.578C>T	c.(577-579)TCA>TTA	p.S193L		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	193										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				AGACAGAAATGAGGAGCGTGT	0.483													18	67					0	0	0.000566183	0	0
CUZD1	50624	broad.mit.edu	37	10	124596429	124596429	+	Silent	SNP	G	A	A	rs138928505		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:124596429G>A	uc001lgq.2	-	5	1067	c.735C>T	c.(733-735)GTC>GTT	p.V245V	CUZD1_uc001lgp.2_5'UTR|CUZD1_uc009yad.2_5'UTR|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_Intron|CUZD1_uc009yae.2_Intron|CUZD1_uc001lgs.2_Silent_p.V245V|CUZD1_uc010qtz.1_Silent_p.V245V	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	245	Extracellular (Potential).|CUB 2.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TAGACAACACGACAGTCAGAG	0.448													10	59					0	0	0.000978159	0	0
FANK1	92565	broad.mit.edu	37	10	127697982	127697982	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:127697982G>A	uc001ljh.3	+	11	1117	c.1013G>A	c.(1012-1014)AGG>AAG	p.R338K	FANK1_uc009yan.2_Missense_Mutation_p.R364K|FANK1_uc001lji.2_3'UTR	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	338						cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				AAAAAGCAGAGGCCAAAGAAG	0.418													8	40					0	0	0.000274275	0	0
ADAM12	8038	broad.mit.edu	37	10	127760159	127760159	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:127760159C>T	uc001ljk.2	-	12	1632	c.1219G>A	c.(1219-1221)GGA>AGA	p.G407R	ADAM12_uc010qul.1_Missense_Mutation_p.G358R|ADAM12_uc001ljm.2_Missense_Mutation_p.G407R|ADAM12_uc001ljn.2_Missense_Mutation_p.G404R|ADAM12_uc001ljl.3_Missense_Mutation_p.G404R	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	407	Extracellular (Potential).|Peptidase M12B.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		ACCCCCATTCCTTTCTCCAGG	0.542													11	41					0	0	0.000673444	0	0
PTPRE	5791	broad.mit.edu	37	10	129854412	129854412	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:129854412G>A	uc001lkb.2	+	7	725	c.446G>A	c.(445-447)GGA>GAA	p.G149E	PTPRE_uc009yat.2_Missense_Mutation_p.G160E|PTPRE_uc010qup.1_Intron|PTPRE_uc009yau.2_Missense_Mutation_p.G149E|PTPRE_uc001lkc.1_RNA|PTPRE_uc001lkd.2_Missense_Mutation_p.G91E|PTPRE_uc010quq.1_Missense_Mutation_p.G50E	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	149	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				CACATACAAGGAACTTTTGAA	0.368													34	181					0	0	0.0025221	0	0
PTPRE	5791	broad.mit.edu	37	10	129861350	129861350	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:129861350C>T	uc001lkb.2	+	10	908	c.629C>T	c.(628-630)CCC>CTC	p.P210L	PTPRE_uc009yat.2_Missense_Mutation_p.P221L|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Missense_Mutation_p.P210L|PTPRE_uc001lkd.2_Missense_Mutation_p.P152L|PTPRE_uc010quq.1_Missense_Mutation_p.P111L	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	210	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				CACACAGGTCCCAAACAGGAA	0.522													14	56					0	0	0.000566183	0	0
PTPRE	5791	broad.mit.edu	37	10	129871686	129871686	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:129871686G>A	uc001lkb.2	+	17	1829	c.1550G>A	c.(1549-1551)TGG>TAG	p.W517*	PTPRE_uc009yat.2_Nonsense_Mutation_p.W528*|PTPRE_uc009yau.2_Nonsense_Mutation_p.W517*|PTPRE_uc001lkd.2_Nonsense_Mutation_p.W459*|PTPRE_uc010quq.1_Nonsense_Mutation_p.W418*	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	517	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				ATCTGGGAATGGAAATCCCAC	0.602													7	35					0	0	0.00198382	0	0
PWWP2B	170394	broad.mit.edu	37	10	134219149	134219149	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr10:134219149C>T	uc001lll.3	+	2	1174	c.1145C>T	c.(1144-1146)TCT>TTT	p.S382F	PWWP2B_uc009ybe.2_Missense_Mutation_p.S382F	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	382											0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		GACTTGTCTTCTGGAAGTTCG	0.677													13	79					0	0	0.000566183	0	0
ATHL1	80162	broad.mit.edu	37	11	293665	293665	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:293665C>T	uc010qvu.1	+	10	1667	c.1552C>T	c.(1552-1554)CGC>TGC	p.R518C	ATHL1_uc001lor.3_Intron|ATHL1_uc001lou.3_Missense_Mutation_p.R93C|ATHL1_uc001lov.3_5'Flank	NM_025092	NP_079368	Q32M88	ATHL1_HUMAN	ATH1, acid trehalase-like 1	518					carbohydrate metabolic process		hydrolase activity, acting on glycosyl bonds			liver(1)|central_nervous_system(1)|skin(1)	3		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.38e-28)|Epithelial(43;3.25e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		TCCTGATGTTCGCAGGAAAAA	0.612													16	110					0	0	0.00074312	0	0
IFITM2	10581	broad.mit.edu	37	11	309089	309089	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:309089G>T	uc001lox.3	+	2	409	c.323G>T	c.(322-324)TGG>TTG	p.W108L		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	108	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		CTGAACATCTGGGCCCTGATT	0.587													6	54					0.00198382	0.00694728	0.00198382	1	0
PKP3	11187	broad.mit.edu	37	11	403636	403636	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:403636C>T	uc001lpc.2	+	10	2018	c.1942C>T	c.(1942-1944)CGC>TGC	p.R648C		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	648	ARM 7.				cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGTGCTGAGCCGCCTGGCCCT	0.677													8	59					0	0	0.000442599	0	0
EPS8L2	64787	broad.mit.edu	37	11	710470	710470	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:710470C>T	uc001lqt.2	+	4	396	c.149C>T	c.(148-150)TCG>TTG	p.S50L	EPS8L2_uc010qwj.1_Missense_Mutation_p.S50L|EPS8L2_uc001lqu.2_Missense_Mutation_p.S50L|EPS8L2_uc010qwk.1_Missense_Mutation_p.S50L|EPS8L2_uc001lqv.2_Missense_Mutation_p.S5L	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	50	PID.					cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CACGAGACCTCGCAGTACCAC	0.582													20	92					0	0	0.00278032	0	0
PNPLA2	57104	broad.mit.edu	37	11	823736	823736	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:823736C>T	uc001lrt.2	+	7	1002	c.800C>T	c.(799-801)GCC>GTC	p.A267V	PNPLA2_uc009ycl.2_Missense_Mutation_p.A31V|EFCAB4A_uc010qwt.1_5'Flank	NM_020376	NP_065109	Q96AD5	PLPL2_HUMAN	patatin-like phospholipase domain containing 2	267	Lumenal (Potential).				negative regulation of sequestering of triglyceride|positive regulation of triglyceride catabolic process	integral to membrane|lipid particle|plasma membrane	triglyceride lipase activity				0		all_cancers(49;4.75e-06)|all_epithelial(84;0.00204)|Breast(177;0.00234)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.63e-25)|Epithelial(43;1.28e-24)|OV - Ovarian serous cystadenocarcinoma(40;7.09e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TTGCCCCCCGCCCGCCCCCAC	0.687													6	18					0	0	0.000157383	0	0
CHID1	66005	broad.mit.edu	37	11	902221	902221	+	Missense_Mutation	SNP	G	A	A	rs139154177		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:902221G>A	uc001lsl.2	-	4	532	c.371C>T	c.(370-372)ACG>ATG	p.T124M	CHID1_uc010qwu.1_Missense_Mutation_p.T154M|CHID1_uc010qwv.1_Missense_Mutation_p.T185M|CHID1_uc001lsn.2_Missense_Mutation_p.T149M|CHID1_uc001lsm.2_Missense_Mutation_p.T124M|CHID1_uc001lso.2_Missense_Mutation_p.T124M|CHID1_uc001lsp.2_Missense_Mutation_p.T124M|CHID1_uc010qww.1_Missense_Mutation_p.T124M	NM_023947	NP_076436	Q9BWS9	CHID1_HUMAN	chitinase domain containing 1 isoform a	124					chitin catabolic process|innate immune response	extracellular region|lysosome	cation binding|chitinase activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.48e-25)|Epithelial(43;3.75e-24)|BRCA - Breast invasive adenocarcinoma(625;4.65e-05)|Lung(200;0.0624)|LUSC - Lung squamous cell carcinoma(625;0.0735)		GTGGAGGCCCGTGACCTCAAA	0.542													12	59					0	0	0.000978159	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642976	1642976	+	Silent	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:1642976A>C	uc009ycy.1	-	3	573	c.486T>G	c.(484-486)GGT>GGG	p.G162G		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	176	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCCCCTTGGAACCCCCACAGG	0.662													5	105					0	0	0.000422831	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651372	1651372	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:1651372C>T	uc001lty.2	+	1	340	c.302C>T	c.(301-303)TCC>TTC	p.S101F		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	101	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGCTGTGTCTCCTGTGGGGTG	0.677													29	127					0	0	0.00178596	0	0
TNNI2	7136	broad.mit.edu	37	11	1862390	1862390	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:1862390G>A	uc010qxe.1	+	5	428	c.406G>A	c.(406-408)GAC>AAC	p.D136N	TNNI2_uc010qxc.1_Missense_Mutation_p.D134N|TNNI2_uc010qxd.1_Missense_Mutation_p.D134N	NM_001145841	NP_001139313	P48788	TNNI2_HUMAN	fast-twitch skeletal muscle troponin I isoform	136					muscle filament sliding|positive regulation of transcription, DNA-dependent|skeletal muscle contraction	cytosol|nucleus|troponin complex	actin binding|troponin T binding				0		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGTGTGCATGGACCTGAGGGC	0.652													14	41					0	0	0.000308642	0	0
KCNQ1	3784	broad.mit.edu	37	11	2549237	2549237	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:2549237C>T	uc001lwn.2	+	2	574	c.466C>T	c.(466-468)CTC>TTC	p.L156F	KCNQ1_uc009ydo.1_3'UTR|KCNQ1_uc009ydp.1_Silent_p.L8L|KCNQ1_uc001lwo.2_Missense_Mutation_p.L29F	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	156	Helical; Name=Segment S2; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	CACGGGGACTCTCTTCTGGAT	0.617													90	460					0	0	0.000781405	0	0
CDKN1C	1028	broad.mit.edu	37	11	2905985	2905985	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:2905985C>T	uc001lws.3	-	1	1011	c.735G>A	c.(733-735)GGG>GGA	p.G245G	CDKN1C_uc001lwu.3_Silent_p.G234G|CDKN1C_uc009ydr.2_Silent_p.G234G|CDKN1C_uc001lwt.3_Intron|CDKN1C_uc001lwr.3_Silent_p.G245G	NM_000076	NP_000067	P49918	CDN1C_HUMAN	cyclin-dependent kinase inhibitor 1C isoform a	245					cell cycle arrest|G1 phase of mitotic cell cycle|negative regulation of epithelial cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of cyclin-dependent protein kinase activity	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding			central_nervous_system(1)	1		all_epithelial(84;0.000187)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|Breast(177;0.00328)|all_neural(188;0.00681)|all_lung(207;0.157)|Lung NSC(207;0.216)		BRCA - Breast invasive adenocarcinoma(625;0.0025)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTCCCGAAATCCCCGAGTGCA	0.637									Beckwith-Wiedemann_syndrome				54	312					0	0	0.000781405	0	0
NAP1L4	4676	broad.mit.edu	37	11	2981045	2981045	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:2981045G>C	uc001lxc.2	-	9	842	c.701C>G	c.(700-702)GCT>GGT	p.A234G	NAP1L4_uc009ydt.2_RNA|NAP1L4_uc010qxm.1_Missense_Mutation_p.A234G|NAP1L4_uc010qxn.1_Missense_Mutation_p.A234G	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	234					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		AAAGGGATCAGCCTTATCTGG	0.368													31	415					0	0	0.000692331	0	0
CARS	833	broad.mit.edu	37	11	3028115	3028115	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:3028115G>A	uc001lxh.2	-	18	1968	c.1894C>T	c.(1894-1896)CAC>TAC	p.H632Y	CARS_uc009ydu.2_RNA|CARS_uc001lxe.2_Missense_Mutation_p.H622Y|CARS_uc001lxf.2_Missense_Mutation_p.H715Y|CARS_uc001lxg.2_Missense_Mutation_p.H632Y|CARS_uc010qxo.1_Missense_Mutation_p.H715Y|CARS_uc010qxp.1_Missense_Mutation_p.H645Y	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	632					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	CCACCTTCGTGGTCTTCAAAC	0.587			T	ALK	ALCL								40	244					0	0	0.000781405	0	0
ZNF195	7748	broad.mit.edu	37	11	3380851	3380851	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:3380851C>T	uc001lxt.2	-	6	1565	c.1387G>A	c.(1387-1389)GAG>AAG	p.E463K	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Missense_Mutation_p.E440K|ZNF195_uc001lxs.2_Missense_Mutation_p.E391K|ZNF195_uc010qxr.1_Missense_Mutation_p.E444K|ZNF195_uc009ydz.2_Missense_Mutation_p.E418K|ZNF195_uc001lxu.2_Missense_Mutation_p.E395K	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	463					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		TAGGGTTTCTCTCCGGTGTGA	0.448													13	67					0	0	0.000308642	0	0
LOC650368	650368	broad.mit.edu	37	11	3430139	3430139	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:3430139C>T	uc010qxs.1	+	11		c.1238C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CGAGCAGCGCCTCCCAGTGGC	0.547													8	14					0	0	0.000274275	0	0
OR51F1	256892	broad.mit.edu	37	11	4790629	4790629	+	Missense_Mutation	SNP	C	T	T	rs149687850		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:4790629C>T	uc010qyl.1	-	1	519	c.519G>A	c.(517-519)ATG>ATA	p.M173I		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	173						integral to membrane	olfactory receptor activity	p.M173I(1)		ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AAAGGGCATTCATTCTACAGA	0.383													10	58					0	0	0.000978159	0	0
OR51S1	119692	broad.mit.edu	37	11	4869488	4869488	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:4869488C>T	uc010qyo.1	-	1	951	c.951G>A	c.(949-951)AGG>AGA	p.R317R		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	317	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CACCCACCTTCCTGGGCTGCA	0.463													9	50					0	0	0.000274275	0	0
OR51S1	119692	broad.mit.edu	37	11	4869718	4869718	+	Missense_Mutation	SNP	G	A	A	rs115882083	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:4869718G>A	uc010qyo.1	-	1	721	c.721C>T	c.(721-723)CGC>TGC	p.R241C		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	241	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCTTCCAGCGATCCTCTCTG	0.522													8	44					0	0	0.000274275	0	0
OR51S1	119692	broad.mit.edu	37	11	4870287	4870287	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:4870287C>T	uc010qyo.1	-	1	152	c.152G>A	c.(151-153)GGC>GAC	p.G51D		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	51	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAGGATGGTGCCATTTCCCAG	0.567													10	49					0	0	0.000978159	0	0
OR51M1	390059	broad.mit.edu	37	11	5411009	5411009	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:5411009C>T	uc010qzc.1	+	1	381	c.381C>T	c.(379-381)CTC>CTT	p.L127L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	127						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTCAGTGCTCCTCATGATGT	0.493													26	189					0	0	0.001512	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5626765	5626765	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:5626765C>T	uc001mbf.2	+	4	1046	c.802C>T	c.(802-804)CGA>TGA	p.R268*	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Nonsense_Mutation_p.R214*|TRIM6_uc010qzj.1_Nonsense_Mutation_p.R65*|TRIM6_uc001mbc.1_Nonsense_Mutation_p.R240*|TRIM6_uc001mbe.2_Nonsense_Mutation_p.R65*|TRIM6_uc010qzk.1_Nonsense_Mutation_p.R65*|TRIM6_uc010qzl.1_Nonsense_Mutation_p.R65*|TRIM6_uc001mbd.2_Nonsense_Mutation_p.R268*|TRIM6_uc001mbg.1_Nonsense_Mutation_p.R65*|TRIM6_uc009yep.1_Nonsense_Mutation_p.R65*	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	268						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		TCTGGAGCGTCGATGTCAGGG	0.507											OREG0003723	type=REGULATORY REGION|Gene=TRIM6|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	11	22					0	0	0.000978159	0	0
OR56A3	390083	broad.mit.edu	37	11	5968724	5968725	+	Nonsense_Mutation	DNP	CT	TA	TA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:5968724_5968725CT>TA	uc010qzt.1	+	1	148_149	c.148_149CT>TA	c.(148-150)CTG>TAG	p.L50*		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	50	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACCACCCTCCTGATGACCATC	0.609													15	61					0	0	6.4e-05	0	0
OR56B4	196335	broad.mit.edu	37	11	6129845	6129845	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:6129845C>T	uc010qzx.1	+	1	837	c.837C>T	c.(835-837)TTC>TTT	p.F279F		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTCCTGTGTTCCTTAATGTGC	0.512													18	66					0	0	0.000566183	0	0
C11orf42	160298	broad.mit.edu	37	11	6226882	6226882	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:6226882G>A	uc001mcj.2	+	1	85	c.37G>A	c.(37-39)GAA>AAA	p.E13K		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	13										ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GACACTGGATGAAGCTGATGC	0.572													20	49					0	0	0.00127121	0	0
APBB1	322	broad.mit.edu	37	11	6424607	6424607	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:6424607C>T	uc001mdb.1	-	5	1082	c.982G>A	c.(982-984)GAG>AAG	p.E328K	APBB1_uc001mcz.1_5'Flank|APBB1_uc001mdd.3_Missense_Mutation_p.E108K|APBB1_uc001mda.2_5'UTR|APBB1_uc001mdc.1_Missense_Mutation_p.E328K|APBB1_uc010rab.1_5'Flank|APBB1_uc010rac.1_5'Flank|APBB1_uc010rad.1_5'Flank|APBB1_uc010rae.1_Missense_Mutation_p.E93K|APBB1_uc010raf.1_Missense_Mutation_p.E69K|APBB1_uc009yfa.2_Missense_Mutation_p.E69K|APBB1_uc009yey.2_Missense_Mutation_p.E69K|APBB1_uc010rag.1_Missense_Mutation_p.E69K|APBB1_uc009yfb.2_Missense_Mutation_p.E69K|APBB1_uc001mde.2_Missense_Mutation_p.E69K|APBB1_uc010rah.1_Missense_Mutation_p.E69K	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	328					apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		AGTCCCAGCTCCATTGGGGCC	0.567													7	24					0	0	0.00198382	0	0
ZNF215	7762	broad.mit.edu	37	11	6953603	6953603	+	Missense_Mutation	SNP	G	A	A	rs35628439		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:6953603G>A	uc001mey.2	+	3	688	c.100G>A	c.(100-102)GAA>AAA	p.E34K	ZNF215_uc010raw.1_Missense_Mutation_p.E34K|ZNF215_uc010rax.1_5'UTR|ZNF215_uc001mez.1_Missense_Mutation_p.E34K	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	34					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		TTGGCAGCAGGAAACCAACCC	0.493													32	75					0	0	0.00148497	0	0
NLRP14	338323	broad.mit.edu	37	11	7070992	7070992	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:7070992G>A	uc001mfb.1	+	6	2537	c.2214G>A	c.(2212-2214)GGG>GGA	p.G738G		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	738	LRR 1.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ACCTAAAAGGGAGTGATATAG	0.383													46	92					0	0	0.000680045	0	0
OR5P3	120066	broad.mit.edu	37	11	7847163	7847163	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:7847163G>A	uc010rbg.1	-	1	357	c.357C>T	c.(355-357)GCC>GCT	p.A119A		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGCGATCATAGGCCATGGCAG	0.552													22	64					0	0	0.00188189	0	0
RIC3	79608	broad.mit.edu	37	11	8132361	8132361	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:8132361C>T	uc001mgd.2	-	6	1048	c.994G>A	c.(994-996)GAA>AAA	p.E332K	RIC3_uc001mgb.2_Missense_Mutation_p.E170K|RIC3_uc001mgc.2_Missense_Mutation_p.E331K|RIC3_uc001mge.2_Missense_Mutation_p.E150K|RIC3_uc010rbl.1_Missense_Mutation_p.E282K|RIC3_uc010rbm.1_Missense_Mutation_p.E360K|RIC3_uc009yfm.2_Missense_Mutation_p.E251K|RIC3_uc009yfn.2_Missense_Mutation_p.E135K	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	332	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		TTGGTGGTTTCCTCTTGCTCA	0.483													31	82					0	0	0.00283554	0	0
ST5	6764	broad.mit.edu	37	11	8732709	8732709	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:8732709G>C	uc001mgt.2	-	10	2428	c.2242C>G	c.(2242-2244)CCT>GCT	p.P748A	ST5_uc009yfr.2_Missense_Mutation_p.P328A|ST5_uc001mgu.2_Missense_Mutation_p.P328A|ST5_uc001mgv.2_Missense_Mutation_p.P748A|ST5_uc010rbq.1_RNA|ST5_uc010rbp.1_Missense_Mutation_p.P261A|ST5_uc009yfs.2_RNA	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	748	UDENN.				positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		TTGGCATCAGGGAAGCAAAAC	0.567													3	99					0	0	0.00024832	0	0
MRVI1	10335	broad.mit.edu	37	11	10651091	10651091	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:10651091G>A	uc010rcc.1	-	5	954	c.568C>T	c.(568-570)CCA>TCA	p.P190S	MRVI1_uc001miw.2_Missense_Mutation_p.P181S|MRVI1_uc010rcb.1_Missense_Mutation_p.P181S|MRVI1_uc009ygb.1_5'UTR|MRVI1_uc001mix.2_5'UTR|MRVI1_uc001miz.2_Missense_Mutation_p.P99S|MRVI1_uc009ygc.1_Missense_Mutation_p.P99S|MRVI1_uc010rcd.1_Missense_Mutation_p.P190S|MRVI1_uc009ygd.1_5'UTR|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	181					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		CTACCTGATGGGGAGTCTCCG	0.642													14	23					0	0	0.00121646	0	0
MICALCL	84953	broad.mit.edu	37	11	12315422	12315422	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:12315422C>T	uc001mkg.1	+	3	735	c.444C>T	c.(442-444)CCC>CCT	p.P148P		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	148					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		AGCTATCTCCCTTGGCTGGAG	0.582													4	26					0	0	0.00024832	0	0
PARVA	55742	broad.mit.edu	37	11	12540005	12540005	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:12540005C>T	uc001mki.2	+	12	1032	c.983C>T	c.(982-984)TCC>TTC	p.S328F		NM_018222	NP_060692	Q9NVD7	PARVA_HUMAN	parvin, alpha	328	CH 2.				cell adhesion|cell junction assembly|cilium morphogenesis	actin cytoskeleton|cytosol|focal adhesion	actin binding			breast(3)	3				Epithelial(150;0.00624)		TTGAATGTCTCCTTTGCCTTT	0.542													4	30					0	0	0.00116845	0	0
TPH1	7166	broad.mit.edu	37	11	18047205	18047205	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:18047205C>T	uc001mnp.2	-	7	873	c.847G>A	c.(847-849)GAA>AAA	p.E283K	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	283					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	AAACTAGGTTCAGCCAAAAGC	0.438													21	44					0	0	0.00229938	0	0
TPH1	7166	broad.mit.edu	37	11	18047216	18047216	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:18047216G>A	uc001mnp.2	-	7	862	c.836C>T	c.(835-837)CCG>CTG	p.P279L	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	279					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	AGCCAAAAGCGGGACATGACC	0.443													21	41					0	0	0.00188189	0	0
TPH1	7166	broad.mit.edu	37	11	18062263	18062263	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:18062263C>T	uc001mnp.2	-	1	73	c.47G>A	c.(46-48)GGA>GAA	p.G16E	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	16					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	ACTTGCTCTTCCCCTTTCTAA	0.343													10	47					0	0	0.000673444	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195625	18195625	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:18195625C>T	uc001mnv.1	+	1	1242	c.822C>T	c.(820-822)TTC>TTT	p.F274F		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	274	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TTTACTTCTTCGTGGGCTCCT	0.488													25	80					0	0	0.000878237	0	0
IGSF22	283284	broad.mit.edu	37	11	18730994	18730994	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:18730994C>T	uc009yht.2	-	18	3128	c.2938G>A	c.(2938-2940)GAG>AAG	p.E980K	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	879	Fibronectin type-III 2.									ovary(4)|large_intestine(2)|kidney(1)	7						ACCCCAGCCTCATTCACAGCC	0.577													40	71					0	0	0.000781405	0	0
E2F8	79733	broad.mit.edu	37	11	19251050	19251050	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:19251050G>A	uc001mpm.2	-	10	2366	c.1844C>T	c.(1843-1845)TCC>TTC	p.S615F	E2F8_uc009yhv.2_Intron|E2F8_uc001mpn.3_Missense_Mutation_p.S615F	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	615					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						TTTCTTTTTGGAACCACTGTC	0.483													61	121					0	0	0.000781405	0	0
NAV2	89797	broad.mit.edu	37	11	20129252	20129252	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:20129252C>T	uc001mpr.3	+	36	7254	c.6893C>T	c.(6892-6894)TCG>TTG	p.S2298L	NAV2_uc001mpp.2_Missense_Mutation_p.S2231L|NAV2_uc009yhx.2_Missense_Mutation_p.S1359L|NAV2_uc009yhz.2_Missense_Mutation_p.S940L|NAV2_uc001mpu.2_Missense_Mutation_p.S733L|NAV2_uc001mpv.2_Missense_Mutation_p.S57L	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	2354						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						GTGGACGGCTCGAGAGTGTGG	0.547													31	205					0	0	0.00283554	0	0
NELL1	4745	broad.mit.edu	37	11	21594829	21594829	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:21594829C>T	uc001mqe.2	+	19	2409	c.2256C>T	c.(2254-2256)GAC>GAT	p.D752D	NELL1_uc001mqf.2_Silent_p.D705D|NELL1_uc009yid.2_Silent_p.D780D|NELL1_uc010rdo.1_Silent_p.D695D|NELL1_uc010rdp.1_Silent_p.D465D|NELL1_uc001mqh.2_Silent_p.D297D	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	752	VWFC 5.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						GTGTCAGTGACCCCTGCCTAG	0.507													11	15					0	0	0.000978159	0	0
MUC15	143662	broad.mit.edu	37	11	26587086	26587086	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:26587086G>A	uc001mqx.2	-	2	586	c.320C>T	c.(319-321)TCC>TTC	p.S107F	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Missense_Mutation_p.S134F|MUC15_uc001mqy.2_Missense_Mutation_p.S134F	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	107	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGGGCTTGTGGAAATGGTAGA	0.448													9	24					0	0	0.000274275	0	0
ANO3	63982	broad.mit.edu	37	11	26646015	26646015	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:26646015G>A	uc001mqt.3	+	18	1988	c.1843G>A	c.(1843-1845)GAA>AAA	p.E615K	ANO3_uc010rdr.1_Missense_Mutation_p.E599K|ANO3_uc010rds.1_Missense_Mutation_p.E454K|ANO3_uc010rdt.1_Missense_Mutation_p.E469K	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	615	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACAGGCTTATGAAAAAATTGC	0.318													22	75					0	0	0.000878237	0	0
BDNF	627	broad.mit.edu	37	11	27680049	27680049	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:27680049C>T	uc010rdu.1	-	2	914	c.63G>A	c.(61-63)ATG>ATA	p.M21I	BDNFOS_uc001mrm.2_Intron|BDNFOS_uc009yij.2_RNA|BDNFOS_uc009yik.2_Intron|BDNFOS_uc009yil.2_RNA|BDNFOS_uc001mrp.2_Intron|BDNFOS_uc009yim.2_RNA|BDNFOS_uc009yin.2_Intron|BDNFOS_uc009yio.2_RNA|BDNFOS_uc009yip.2_RNA|BDNFOS_uc001mrn.2_Intron|BDNFOS_uc009yiq.2_RNA|BDNFOS_uc001mro.2_Intron|BDNFOS_uc009yir.2_RNA|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_Intron|BDNFOS_uc009yiu.2_RNA|BDNFOS_uc009yiv.2_Intron|BDNFOS_uc009yiw.2_RNA|BDNFOS_uc009yix.2_Intron|BDNFOS_uc009yiy.2_RNA|BDNFOS_uc009yiz.2_RNA|BDNFOS_uc001mrq.3_Intron|BDNFOS_uc001mrr.3_Intron|BDNFOS_uc009yja.2_Intron|BDNFOS_uc009yjb.2_RNA|BDNF_uc010rdv.1_Missense_Mutation_p.M21I|BDNF_uc001mrt.2_Missense_Mutation_p.M36I|BDNF_uc010rdw.1_Missense_Mutation_p.M21I|BDNF_uc009yjd.2_Missense_Mutation_p.M21I|BDNF_uc001mru.2_Missense_Mutation_p.M21I|BDNF_uc010rdx.1_Missense_Mutation_p.M21I|BDNF_uc010rdy.1_Missense_Mutation_p.M21I|BDNF_uc009yjg.2_Missense_Mutation_p.M21I|BDNF_uc009yje.2_Missense_Mutation_p.M103I|BDNF_uc009yjf.2_Missense_Mutation_p.M50I|BDNF_uc001mrv.2_Missense_Mutation_p.M21I|BDNF_uc001mrw.3_Missense_Mutation_p.M21I|BDNF_uc001mrx.2_Missense_Mutation_p.M21I|BDNF_uc001mry.3_Missense_Mutation_p.M21I|BDNF_uc001mrz.3_Missense_Mutation_p.M21I|BDNF_uc001msa.2_Missense_Mutation_p.M29I	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	21						extracellular region	growth factor activity				0						TTGCTTCTTTCATGGGGGCAG	0.522													26	137					0	0	0.00127121	0	0
BDNF	627	broad.mit.edu	37	11	27680087	27680087	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:27680087C>T	uc010rdu.1	-	2	876	c.25G>A	c.(25-27)GTT>ATT	p.V9I	BDNFOS_uc001mrm.2_Intron|BDNFOS_uc009yij.2_RNA|BDNFOS_uc009yik.2_Intron|BDNFOS_uc009yil.2_RNA|BDNFOS_uc001mrp.2_Intron|BDNFOS_uc009yim.2_RNA|BDNFOS_uc009yin.2_Intron|BDNFOS_uc009yio.2_RNA|BDNFOS_uc009yip.2_RNA|BDNFOS_uc001mrn.2_Intron|BDNFOS_uc009yiq.2_RNA|BDNFOS_uc001mro.2_Intron|BDNFOS_uc009yir.2_RNA|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_Intron|BDNFOS_uc009yiu.2_RNA|BDNFOS_uc009yiv.2_Intron|BDNFOS_uc009yiw.2_RNA|BDNFOS_uc009yix.2_Intron|BDNFOS_uc009yiy.2_RNA|BDNFOS_uc009yiz.2_RNA|BDNFOS_uc001mrq.3_Intron|BDNFOS_uc001mrr.3_Intron|BDNFOS_uc009yja.2_Intron|BDNFOS_uc009yjb.2_RNA|BDNF_uc010rdv.1_Missense_Mutation_p.V9I|BDNF_uc001mrt.2_Missense_Mutation_p.V24I|BDNF_uc010rdw.1_Missense_Mutation_p.V9I|BDNF_uc009yjd.2_Missense_Mutation_p.V9I|BDNF_uc001mru.2_Missense_Mutation_p.V9I|BDNF_uc010rdx.1_Missense_Mutation_p.V9I|BDNF_uc010rdy.1_Missense_Mutation_p.V9I|BDNF_uc009yjg.2_Missense_Mutation_p.V9I|BDNF_uc009yje.2_Missense_Mutation_p.V91I|BDNF_uc009yjf.2_Missense_Mutation_p.V38I|BDNF_uc001mrv.2_Missense_Mutation_p.V9I|BDNF_uc001mrw.3_Missense_Mutation_p.V9I|BDNF_uc001mrx.2_Missense_Mutation_p.V9I|BDNF_uc001mry.3_Missense_Mutation_p.V9I|BDNF_uc001mrz.3_Missense_Mutation_p.V9I|BDNF_uc001msa.2_Missense_Mutation_p.V17I	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	9						extracellular region	growth factor activity				0						TATGAAATAACCATAGTAAGG	0.493													46	119					0	0	0.000781405	0	0
WIT1	51352	broad.mit.edu	37	11	32460585	32460585	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:32460585C>T	uc010rec.1	+	2		c.1303C>T			WIT1_uc010red.1_RNA|WIT1_uc010ree.1_Intron	NR_023920				full-length cDNA clone CS0DC024YP12 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0	Breast(20;0.247)					TTACTTTCACCCCGGCGCTGT	0.607													8	63					0	0	0.000978159	0	0
HIPK3	10114	broad.mit.edu	37	11	33361066	33361066	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:33361066C>T	uc001mul.1	+	6	1869	c.1599C>T	c.(1597-1599)TTC>TTT	p.F533F	HIPK3_uc001mum.1_Silent_p.F533F|HIPK3_uc009yjv.1_Silent_p.F533F	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	533					anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						TTCTAGATTTCCCTCATAGCA	0.308													26	153					0	0	0.000720815	0	0
CAT	847	broad.mit.edu	37	11	34477732	34477732	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:34477732C>T	uc001mvm.2	+	7	969	c.886C>T	c.(886-888)CCA>TCA	p.P296S	CAT_uc009ykc.1_RNA	NM_001752	NP_001743	P04040	CATA_HUMAN	catalase	296					hydrogen peroxide catabolic process|negative regulation of apoptosis|positive regulation of cell division|protein tetramerization|purine base metabolic process|purine nucleotide catabolic process|UV protection	peroxisomal matrix|peroxisomal membrane	catalase activity|heme binding|NADP binding|protein homodimerization activity			ovary(2)|pancreas(1)	3		Lung NSC(402;2.76e-08)|Acute lymphoblastic leukemia(5;0.00143)|all_hematologic(20;0.0116)|Melanoma(852;0.027)		BRCA - Breast invasive adenocarcinoma(625;0.000995)	Fomepizole(DB01213)	TCCATTTAATCCATTCGATCT	0.353													5	30					0	0	0.000602214	0	0
PAMR1	25891	broad.mit.edu	37	11	35457602	35457602	+	Silent	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:35457602A>G	uc001mwg.2	-	9	1225	c.1182T>C	c.(1180-1182)CTT>CTC	p.L394L	PAMR1_uc001mwf.2_Silent_p.L411L|PAMR1_uc010rew.1_Silent_p.L283L|PAMR1_uc010rex.1_Silent_p.L354L	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	394	Sushi 2.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CTCCAAAGGGAAGGGCTGGCT	0.567													19	119					0	0	0.00229938	0	0
ACCS	84680	broad.mit.edu	37	11	44104794	44104794	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:44104794T>C	uc009yks.1	+	13	1331	c.1187T>C	c.(1186-1188)CTT>CCT	p.L396P	EXT2_uc010rfo.1_Intron|ACCS_uc001mxx.2_Missense_Mutation_p.L396P	NM_001127219	NP_001120691	Q96QU6	1A1L1_HUMAN	1-aminocyclopropane-1-carboxylate synthase	396							1-aminocyclopropane-1-carboxylate synthase activity|protein homodimerization activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			breast(2)|ovary(1)|lung(1)	4						TCAGAAGAGCTTAGGGCATTG	0.562													9	67					0	0	0.000442599	0	0
EXT2	2132	broad.mit.edu	37	11	44130795	44130795	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:44130795C>T	uc001mxz.2	+	3	922	c.588C>T	c.(586-588)CCC>CCT	p.P196P	EXT2_uc010rfo.1_Silent_p.P224P|EXT2_uc001mxy.2_Silent_p.P209P|EXT2_uc009ykt.2_Silent_p.P196P|EXT2_uc001mya.2_Silent_p.P229P	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	196	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						CTGGAGGTCCCCCAGATTATA	0.428			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				16	49					0	0	0.00121646	0	0
TSPAN18	90139	broad.mit.edu	37	11	44931278	44931278	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:44931278C>T	uc001mye.3	+	3	247	c.86C>T	c.(85-87)GCC>GTC	p.A29V	TP53I11_uc001myf.1_Intron|TSPAN18_uc001myg.2_Missense_Mutation_p.A29V	NM_130783	NP_570139	Q96SJ8	TSN18_HUMAN	tetraspanin 18 isoform 2	29	Helical; (Potential).					integral to membrane					0						TGCCTGCTGGCCATCGGCATC	0.657													28	64					0	0	0.00058488	0	0
AMBRA1	55626	broad.mit.edu	37	11	46529781	46529781	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:46529781G>A	uc010rgu.1	-	9	2659	c.2299C>T	c.(2299-2301)CCA>TCA	p.P767S	AMBRA1_uc010rgt.1_Missense_Mutation_p.P333S|AMBRA1_uc009ylc.1_Missense_Mutation_p.P738S|AMBRA1_uc001ncu.1_Missense_Mutation_p.P677S|AMBRA1_uc001ncv.2_Missense_Mutation_p.P770S|AMBRA1_uc001ncw.2_Missense_Mutation_p.P648S|AMBRA1_uc001ncx.2_Intron	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	767					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		TCTACTGATGGACCCTGGTTG	0.512													7	51					0	0	0.000157383	0	0
C1QTNF4	114900	broad.mit.edu	37	11	47611798	47611798	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:47611798C>T	uc001ngc.2	-	2	832	c.565G>A	c.(565-567)GGC>AGC	p.G189S		NM_031909	NP_114115	Q9BXJ3	C1QT4_HUMAN	C1q and tumor necrosis factor related protein 4	189	C1q 2.					extracellular region					0						GCGTCCGAGCCCACCAAGCTG	0.607													5	8					0	0	0.000602214	0	0
PTPRJ	5795	broad.mit.edu	37	11	48185143	48185143	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:48185143C>T	uc001ngp.3	+	23	4047	c.3692C>T	c.(3691-3693)CCC>CTC	p.P1231L		NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	1231	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						CAGAGTCCTCCCGAATCGCCG	0.478													5	33					0	0	0.000602214	0	0
OR4B1	119765	broad.mit.edu	37	11	48239282	48239282	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:48239282G>A	uc010rhs.1	+	1	921	c.921G>A	c.(919-921)GGG>GGA	p.G307G		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						AGAATCCAGGGAGGGAGTGAA	0.408													10	14					0	0	0.000673444	0	0
OR4C46	119749	broad.mit.edu	37	11	51515514	51515514	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:51515514A>G	uc010ric.1	+	1	233	c.233A>G	c.(232-234)AAC>AGC	p.N78S		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	78	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AATACCCCTAACCTGATCACA	0.493													44	74					0	0	0.000680045	0	0
OR8H1	219469	broad.mit.edu	37	11	56058353	56058353	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:56058353G>A	uc010rje.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					AGTGAGTAAGGAAAAAATACA	0.403													69	133					0	0	0.000781405	0	0
OR8K1	390157	broad.mit.edu	37	11	56114225	56114225	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:56114225G>A	uc010rjg.1	+	1	711	c.711G>A	c.(709-711)AGG>AGA	p.R237R		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TGAACTCAAGGAAAGGGAGGT	0.403										HNSCC(65;0.19)			11	17					0	0	0.000978159	0	0
LRRC55	219527	broad.mit.edu	37	11	56949817	56949817	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:56949817C>T	uc001njl.1	+	1	597	c.450C>T	c.(448-450)GGC>GGT	p.G150G		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	120	LRR 2.					integral to membrane					0						TGCCCCGGGGCCTCTTCCTCC	0.577													8	11					0	0	0.000157383	0	0
OR6Q1	219952	broad.mit.edu	37	11	57798862	57798862	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:57798862C>T	uc010rjz.1	+	1	438	c.438C>T	c.(436-438)ATC>ATT	p.I146I	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				GCACCTGCATCCGTCTGGCAG	0.512													17	37					0	0	0.000958276	0	0
OR6Q1	219952	broad.mit.edu	37	11	57799099	57799099	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:57799099C>T	uc010rjz.1	+	1	675	c.675C>T	c.(673-675)ATC>ATT	p.I225I	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				ATGGCAACATCGTCTGGACAC	0.557													29	49					0	0	0.001512	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995623	57995623	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:57995623G>A	uc010rkd.1	-	1	725	c.725C>T	c.(724-726)GCC>GTC	p.A242V		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	242	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				GGTGGAGAAGGCCCGGCGGCG	0.627													18	20					0	0	0.000566183	0	0
GLYAT	10249	broad.mit.edu	37	11	58478127	58478127	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:58478127C>T	uc001nnb.2	-	5	579	c.424G>A	c.(424-426)GAA>AAA	p.E142K	GLYAT_uc001nnc.2_Missense_Mutation_p.E142K	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	142					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	GGAGTCAGTTCCTTGGCTGTT	0.428													32	59					0	0	0.0024448	0	0
GLYATL2	219970	broad.mit.edu	37	11	58604599	58604599	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:58604599G>A	uc001nnd.3	-	5	496	c.365C>T	c.(364-366)TCA>TTA	p.S122L	GLYATL2_uc009ymq.2_Missense_Mutation_p.S122L	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	122						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TACCTGCACTGATTTTGAAGT	0.403													13	42					0	0	0.00244969	0	0
OR5A1	219982	broad.mit.edu	37	11	59211305	59211305	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:59211305G>A	uc001nnx.1	+	1	664	c.664G>A	c.(664-666)GGT>AGT	p.G222S		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	222	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						TATCTCCTATGGTTACATAGT	0.532													42	68					0	0	0.0025221	0	0
PATL1	219988	broad.mit.edu	37	11	59423975	59423975	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:59423975G>A	uc001noe.3	-	6	863	c.720C>T	c.(718-720)GTC>GTT	p.V240V	PATL1_uc009yms.1_Silent_p.V240V|PATL1_uc010rkw.1_Intron	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	240	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						GACATACCGGGACACTGCAGA	0.458													10	22					0	0	0.000673444	0	0
MS4A6A	64231	broad.mit.edu	37	11	59942994	59942994	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:59942994G>A	uc001nor.2	-	5	668	c.430C>T	c.(430-432)CCT>TCT	p.P144S	MS4A6A_uc001noq.2_Missense_Mutation_p.P144S|MS4A6A_uc001nos.3_Missense_Mutation_p.P172S|MS4A6A_uc009ymv.2_Missense_Mutation_p.P144S|MS4A6A_uc001not.2_Missense_Mutation_p.P144S|MS4A6A_uc010rla.1_Missense_Mutation_p.P172S|MS4A6A_uc010rlb.1_Missense_Mutation_p.P99S	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	144	Extracellular (Potential).					integral to membrane	receptor activity				0						AGTGAGGCAGGATTTAAGGTG	0.428													12	37					0	0	0.00136819	0	0
TMEM132A	54972	broad.mit.edu	37	11	60703336	60703336	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:60703336G>A	uc001nqj.2	+	11	2222	c.2029G>A	c.(2029-2031)GAG>AAG	p.E677K	TMEM132A_uc001nqi.2_Missense_Mutation_p.E678K|TMEM132A_uc001nqm.2_5'UTR	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	677	Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						TGCCCCACAGGAGGTGGCCCT	0.612													64	106					0	0	0.000781405	0	0
DAGLA	747	broad.mit.edu	37	11	61490429	61490429	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:61490429C>T	uc001nsa.2	+	4	517	c.406C>T	c.(406-408)CTC>TTC	p.L136F		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	136	Extracellular (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GAATGTCACCCTCGGTACGTC	0.592													28	25					0	0	0.00127121	0	0
DAGLA	747	broad.mit.edu	37	11	61504722	61504722	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:61504722C>T	uc001nsa.2	+	14	1551	c.1440C>T	c.(1438-1440)ATC>ATT	p.I480I		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	480	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CTGCTGCCATCCTCTCCTTCC	0.647													60	129					0	0	0.000781405	0	0
FADS2	9415	broad.mit.edu	37	11	61607868	61607868	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:61607868G>A	uc001nsl.1	+	3	531	c.381G>A	c.(379-381)AAG>AAA	p.K127K	FADS2_uc001nsj.2_Silent_p.K105K|FADS2_uc010rlo.1_Silent_p.K96K|FADS2_uc001nsk.2_Silent_p.K127K	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	127	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	ACCTGTTCAAGACCAACCACG	0.532													62	84					0	0	0.000781405	0	0
RAB3IL1	5866	broad.mit.edu	37	11	61665766	61665766	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:61665766A>T	uc001nso.2	-	10	1291	c.1133T>A	c.(1132-1134)TTC>TAC	p.F378Y	RAB3IL1_uc001nsp.2_Missense_Mutation_p.F352Y	NM_013401	NP_037533	Q8TBN0	R3GEF_HUMAN	RAB3A interacting protein (rabin3)-like 1	378							protein binding			skin(2)|central_nervous_system(1)	3						CTCCTGGGGGAAGAAGCCGAG	0.632											OREG0021017	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	62	145					0	0	0.000781405	0	0
SCGB2A1	4246	broad.mit.edu	37	11	61977904	61977904	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:61977904G>A	uc001nta.2	+	2	139	c.75G>A	c.(73-75)CTG>CTA	p.L25L		NM_002407	NP_002398	O75556	SG2A1_HUMAN	secretoglobin, family 2A, member 1 precursor	25						extracellular region	androgen binding				0						GCAAACTCCTGGAGGACATGG	0.393													36	68					0	0	0.000814825	0	0
SCGB1D2	10647	broad.mit.edu	37	11	62010858	62010858	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:62010858C>T	uc001ntb.2	+	2	209	c.153C>T	c.(151-153)GCC>GCT	p.A51A		NM_006551	NP_006542	O95969	SG1D2_HUMAN	lipophilin B precursor	51						extracellular space	binding				0						AATTTGATGCCCCTCCGGAAG	0.478													29	47					0	0	0.0024448	0	0
EML3	256364	broad.mit.edu	37	11	62375742	62375742	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:62375742C>A	uc001ntu.1	-	10	1445	c.1137G>T	c.(1135-1137)GTG>GTT	p.V379V	EML3_uc001ntr.1_Silent_p.V351V|EML3_uc001nts.1_Silent_p.V351V|EML3_uc001ntt.1_Silent_p.V263V|EML3_uc010rly.1_Silent_p.V379V|EML3_uc009yny.1_Silent_p.V162V	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	379	WD 2.					cytoplasm|microtubule	protein binding			ovary(1)	1						TGGAATCATCCACCACACAAA	0.542													10	222					6.40141e-05	0.00022569	0.000978159	1	0
STX5	6811	broad.mit.edu	37	11	62592967	62592967	+	Silent	SNP	G	A	A	rs146258093		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:62592967G>A	uc001nvh.2	-	6	622	c.468C>T	c.(466-468)TTC>TTT	p.F156F	STX5_uc010rmi.1_Silent_p.F60F|STX5_uc009yoh.2_RNA|STX5_uc001nvi.2_Silent_p.F102F|STX5_uc010rmj.1_Silent_p.F156F|STX5_uc001nvj.2_5'UTR	NM_003164	NP_003155	Q13190	STX5_HUMAN	syntaxin 5	156	Cytoplasmic (Potential).				intracellular protein transport|retrograde transport, endosome to Golgi|vesicle targeting	ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|nucleus|SNARE complex	protein N-terminus binding|SNAP receptor activity			ovary(1)|breast(1)	2						TGGCTCTCACGAAATCCTGGA	0.532													36	72					0	0	0.0025221	0	0
CHRM1	1128	broad.mit.edu	37	11	62678033	62678033	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:62678033G>A	uc001nwi.2	-	2	941	c.540C>T	c.(538-540)ATC>ATT	p.I180I		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	180	Extracellular (Potential).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	AGAGGAACTGGATGTAGCACT	0.607													7	18					0	0	0.00198382	0	0
GPR137	56834	broad.mit.edu	37	11	64055847	64055848	+	Silent	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:64055847_64055848CC>TT	uc001nzg.1	+	6	1127_1128	c.819_820CC>TT	c.(817-822)TACCTG>TATTTG	p.273_274YL>YL	GPR137_uc010rni.1_Silent_p.331_332YL>YL|GPR137_uc001nzf.2_Silent_p.223_224YL>YL|GPR137_uc001nzi.2_Silent_p.273_274YL>YL|GPR137_uc010rnj.1_Silent_p.273_274YL>YL|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	273_274	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						ACAAAGGCTACCTGGTATTTGG	0.634													45	64					0	0	6.4e-05	0	0
NRXN2	9379	broad.mit.edu	37	11	64397988	64397988	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:64397988C>T	uc001oap.2	-	4	1016	c.505G>A	c.(505-507)GAG>AAG	p.E169K	NRXN2_uc001oar.2_Missense_Mutation_p.E1215K|NRXN2_uc001oas.2_Missense_Mutation_p.E1175K|NRXN2_uc001oaq.2_Missense_Mutation_p.E882K	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	169	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GCGTTGGGCTCGTCGATGGTA	0.627													30	54					0	0	0.00209593	0	0
PYGM	5837	broad.mit.edu	37	11	64521746	64521746	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:64521746C>T	uc001oax.3	-	9	1888	c.1071G>A	c.(1069-1071)CTG>CTA	p.L357L	PYGM_uc001oay.3_Silent_p.L269L	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	357					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	CCATCCGTTCCAGGTCCACCA	0.647													23	63					0	0	0.000586117	0	0
MEN1	4221	broad.mit.edu	37	11	64575105	64575105	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:64575105C>T	uc001obj.2	-	4	790	c.717G>A	c.(715-717)ATG>ATA	p.M239I	MEN1_uc001obk.2_Missense_Mutation_p.M239I|MEN1_uc001obl.2_Missense_Mutation_p.M199I|MEN1_uc001obm.2_Missense_Mutation_p.M234I|MEN1_uc001obn.2_Missense_Mutation_p.M239I|MEN1_uc001obo.2_Missense_Mutation_p.M239I|MEN1_uc001obp.2_Missense_Mutation_p.M234I|MEN1_uc001obq.2_Missense_Mutation_p.M239I|MEN1_uc001obr.2_Missense_Mutation_p.M239I	NM_130800	NP_570712	O00255	MEN1_HUMAN	menin isoform 1	239	Interaction with FANCD2.				DNA repair|histone lysine methylation|MAPKKK cascade|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of JNK cascade|negative regulation of osteoblast differentiation|negative regulation of protein phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of telomerase activity|negative regulation of transcription from RNA polymerase II promoter|osteoblast development|positive regulation of protein binding|positive regulation of transforming growth factor beta receptor signaling pathway|response to gamma radiation|response to UV|transcription, DNA-dependent	chromatin|cleavage furrow|cytosol|histone methyltransferase complex|nuclear matrix|soluble fraction	double-stranded DNA binding|four-way junction DNA binding|protein binding, bridging|protein N-terminus binding|R-SMAD binding|transcription regulatory region DNA binding|Y-form DNA binding			parathyroid(105)|pancreas(64)|gastrointestinal_tract_(site_indeterminate)(15)|small_intestine(13)|lung(9)|pituitary(7)|NS(7)|adrenal_gland(5)|soft_tissue(4)|central_nervous_system(4)|thymus(2)|stomach(1)|retroperitoneum(1)|skin(1)	238						ACGCCACCTCCATCTTGCGGT	0.463			D|Mis|N|F|S		parathyroid tumors|Pancreatic neuroendocrine tumors	parathyroid adenoma|pituitary adenoma|pancreatic islet cell|carcinoid			Hyperparathyroidism_Familial_Isolated|Multiple_Endocrine_Neoplasia_type_1				49	88					0	0	0.000781405	0	0
NPAS4	266743	broad.mit.edu	37	11	66192547	66192547	+	Missense_Mutation	SNP	G	A	A	rs148679589		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:66192547G>A	uc001ohx.1	+	7	2362	c.2186G>A	c.(2185-2187)GGG>GAG	p.G729E	NPAS4_uc010rpc.1_Missense_Mutation_p.G519E	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	729					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TGGGGCTCAGGGGATCCTGAG	0.582													18	39					0	0	0.00121646	0	0
NPAS4	266743	broad.mit.edu	37	11	66192568	66192568	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:66192568C>T	uc001ohx.1	+	7	2383	c.2207C>T	c.(2206-2208)CCA>CTA	p.P736L	NPAS4_uc010rpc.1_Missense_Mutation_p.P526L	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	736					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GCAGAGGGCCCAGGAGGGGCC	0.582													22	41					0	0	0.00229938	0	0
SPTBN2	6712	broad.mit.edu	37	11	66472263	66472263	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:66472263G>A	uc001ojd.2	-	14	2556	c.2484C>T	c.(2482-2484)CCC>CCT	p.P828P		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	828	Spectrin 5.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCTCCAGGGTGGGCACCCGGC	0.716													4	9					0	0	0.00024832	0	0
GPR152	390212	broad.mit.edu	37	11	67219581	67219581	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:67219581G>A	uc001olm.2	-	1	620	c.615C>T	c.(613-615)TTC>TTT	p.F205F	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	205	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			GCAGCAGGAGGAAAGGCAGGA	0.677													25	28					0	0	0.00106085	0	0
ACY3	91703	broad.mit.edu	37	11	67413180	67413180	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:67413180G>A	uc001omq.2	-	4	586	c.415C>T	c.(415-417)CTG>TTG	p.L139L		NM_080658	NP_542389	Q96HD9	ACY3_HUMAN	aspartoacylase 3	139					interspecies interaction between organisms	apical plasma membrane|cytoplasm	hydrolase activity, acting on ester bonds|metal ion binding				0					L-Aspartic Acid(DB00128)	TGGCGGCACAGGTGCATGGCA	0.627													23	47					0	0	0.000878237	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276920	71276920	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:71276920C>T	uc001oqt.1	+	1	312	c.287C>T	c.(286-288)TCC>TTC	p.S96F		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	96	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GGCTGTGGCTCCTGTGGGGGC	0.687													17	69					0	0	0.00229938	0	0
FOLR1	2348	broad.mit.edu	37	11	71906446	71906446	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:71906446C>T	uc001orz.1	+	4	438	c.300C>T	c.(298-300)TTC>TTT	p.F100F	FOLR1_uc001osa.1_Silent_p.F100F|FOLR1_uc001osb.1_Silent_p.F100F|FOLR1_uc001osc.1_Silent_p.F100F|FOLR1_uc001osd.1_Silent_p.F100F	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	100					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						AACGGCATTTCATCCAGGACA	0.547													59	104					0	0	0.000781405	0	0
LRRC32	2615	broad.mit.edu	37	11	76370928	76370928	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:76370928C>T	uc001oxq.3	-	3	1952	c.1709G>A	c.(1708-1710)GGG>GAG	p.G570E	LRRC32_uc001oxr.3_Missense_Mutation_p.G570E|LRRC32_uc010rsf.1_Missense_Mutation_p.G556E	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	570	Extracellular (Potential).					integral to plasma membrane					0						GAGTGGATTCCCCTGCAGGTA	0.662													12	26					0	0	0.000308642	0	0
CAPN5	726	broad.mit.edu	37	11	76823641	76823641	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:76823641C>T	uc001oxx.2	+	4	489	c.304C>T	c.(304-306)CCA>TCA	p.P102S	CAPN5_uc009yup.2_Missense_Mutation_p.P142S|CAPN5_uc009yuq.2_Missense_Mutation_p.P138S|CAPN5_uc001oxy.2_Missense_Mutation_p.P142S	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	102	Calpain catalytic.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						CCAGGTCATCCCAGACTGGAA	0.617													14	46					0	0	0.000958276	0	0
CAPN5	726	broad.mit.edu	37	11	76825396	76825396	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:76825396C>T	uc001oxx.2	+	5	800	c.615C>T	c.(613-615)GCC>GCT	p.A205A	CAPN5_uc009yup.2_Silent_p.A245A|CAPN5_uc009yuq.2_Silent_p.A241A|CAPN5_uc001oxy.2_Silent_p.A245A	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	205	Calpain catalytic.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						GTGACTTTGCCAACGATGAGA	0.577											OREG0021255	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	95	186					0	0	0.000781405	0	0
MYO7A	4647	broad.mit.edu	37	11	76922920	76922920	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:76922920C>T	uc001oyb.2	+	46	6564	c.6292C>T	c.(6292-6294)CTG>TTG	p.L2098L	MYO7A_uc001oyc.2_Silent_p.L2060L|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	2098	FERM 2.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GGAGGCCAAGCTGGCCTTCCT	0.597													16	25					0	0	0.00121646	0	0
RSF1	51773	broad.mit.edu	37	11	77412531	77412531	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:77412531G>A	uc001oyn.2	-	6	1863	c.1743C>T	c.(1741-1743)ATC>ATT	p.I581I	RSF1_uc001oym.2_Silent_p.I329I	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	581					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			GACATTCTAGGATTGGTGGGC	0.403													56	131					0	0	0.000781405	0	0
ODZ4	26011	broad.mit.edu	37	11	78372622	78372622	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:78372622G>A	uc001ozl.3	-	33	7886	c.7423C>T	c.(7423-7425)CTG>TTG	p.L2475L	ODZ4_uc001ozk.3_Silent_p.L700L|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2475	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AAGGTGAGCAGCCAGCTGTTA	0.512													10	15					0	0	0.000978159	0	0
ODZ4	26011	broad.mit.edu	37	11	78381204	78381204	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:78381204G>A	uc001ozl.3	-	32	6649	c.6186C>T	c.(6184-6186)CCC>CCT	p.P2062P	ODZ4_uc001ozk.3_Silent_p.P287P|ODZ4_uc009yvb.1_Silent_p.P646P	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2062	YD 12.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGTCAATCAGGGGCCCAATCT	0.542													6	21					0	0	0.000274275	0	0
CCDC89	220388	broad.mit.edu	37	11	85397055	85397055	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:85397055T>A	uc001pau.1	-	1	266	c.119A>T	c.(118-120)AAG>ATG	p.K40M		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	40	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				GTCCAGTTCCTTAAACTCCGT	0.552													22	31					0	0	0.000586117	0	0
CCDC83	220047	broad.mit.edu	37	11	85593684	85593684	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:85593684G>A	uc001pbh.1	+	4	821	c.309G>A	c.(307-309)TGG>TGA	p.W103*	CCDC83_uc001pbg.1_Nonsense_Mutation_p.W103*|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Nonsense_Mutation_p.W60*	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	103	Potential.									skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				AGGAAAAATGGAAGTTTGAAA	0.383													27	38					0	0	0.00127121	0	0
FAT3	120114	broad.mit.edu	37	11	92085335	92085335	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:92085335C>T	uc001pdj.3	+	1	74	c.57C>T	c.(55-57)ATC>ATT	p.I19I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	19					homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTTGCCTCATCCTCCTGCTTT	0.507										TCGA Ovarian(4;0.039)			93	218					0	0	0.000781405	0	0
FAT3	120114	broad.mit.edu	37	11	92087329	92087329	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:92087329G>A	uc001pdj.3	+	1	2068	c.2051G>A	c.(2050-2052)AGA>AAA	p.R684K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	684	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTCAGTTGCAGAGAAACTCGT	0.408										TCGA Ovarian(4;0.039)			80	180					0	0	0.000781405	0	0
FAT3	120114	broad.mit.edu	37	11	92088399	92088399	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:92088399C>T	uc001pdj.3	+	1	3138	c.3121C>T	c.(3121-3123)CCC>TCC	p.P1041S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1041	Cadherin 9.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCTCCACACTCCCTATTTCCC	0.502										TCGA Ovarian(4;0.039)			76	130					0	0	0.000781405	0	0
FAT3	120114	broad.mit.edu	37	11	92577351	92577351	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:92577351C>T	uc001pdj.3	+	18	10835	c.10818C>T	c.(10816-10818)ATC>ATT	p.I3606I	FAT3_uc001pdi.3_Silent_p.I46I	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3606	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGAAAATCATCGCCCTGGGAG	0.488										TCGA Ovarian(4;0.039)			178	259					0	0	0.000781405	0	0
SLC36A4	120103	broad.mit.edu	37	11	92918857	92918857	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:92918857G>A	uc001pdn.2	-	2	276	c.179C>T	c.(178-180)TCA>TTA	p.S60L	SLC36A4_uc001pdm.2_5'UTR	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	60					L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TAACACTTACGAAATGCCCTC	0.338													147	230					0	0	0.000781405	0	0
MRE11A	4361	broad.mit.edu	37	11	94197315	94197315	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:94197315G>A	uc001peu.2	-	11	1378	c.1189C>T	c.(1189-1191)CAT>TAT	p.H397Y	MRE11A_uc001pev.2_Missense_Mutation_p.H397Y|MRE11A_uc009ywj.2_Missense_Mutation_p.H400Y	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	397					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				CTGAAAAAATGGATAATGTCT	0.343								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				31	70					0	0	0.00058488	0	0
MMP7	4316	broad.mit.edu	37	11	102395720	102395720	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:102395720C>T	uc001phb.2	-	4	607	c.560G>A	c.(559-561)GGA>GAA	p.G187E	MMP7_uc009yxd.2_Missense_Mutation_p.G187E	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	187		Calcium 1; via carbonyl oxygen.			collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		AGCATCTCCTCCGAGACCTGT	0.502													23	46					0	0	0.00278032	0	0
MMP27	64066	broad.mit.edu	37	11	102575382	102575382	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:102575382C>T	uc001phd.1	-	2	250	c.227G>A	c.(226-228)GGA>GAA	p.G76E		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	76					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		GTCCAGTTTTCCAGTCACTGT	0.453													8	22					0	0	0.000157383	0	0
MMP3	4314	broad.mit.edu	37	11	102709863	102709863	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:102709863C>T	uc001phj.1	-	7	1112	c.1047G>A	c.(1045-1047)AAG>AAA	p.K349K		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	349	Hemopexin-like 2.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	AAACGAGGTCCTTGCTAGTAA	0.373													21	39					0	0	0.00188189	0	0
PDGFD	80310	broad.mit.edu	37	11	103780454	103780454	+	Missense_Mutation	SNP	C	T	T	rs146343067	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:103780454C>T	uc001phq.2	-	7	1453	c.1081G>A	c.(1081-1083)GAT>AAT	p.D361N	PDGFD_uc001php.2_Missense_Mutation_p.D355N	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	361					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		CAGATACAATCACATCGTTCA	0.458													46	81					0	0	0.000781405	0	0
ATM	472	broad.mit.edu	37	11	108121761	108121761	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:108121761C>T	uc001pkb.1	+	10	1954	c.1569C>T	c.(1567-1569)TTC>TTT	p.F523F	ATM_uc009yxr.1_Silent_p.F523F	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	523					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		ACAGAGAATTCTGGAAGTTAT	0.338			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			44	83					0	0	0.000781405	0	0
EXPH5	23086	broad.mit.edu	37	11	108383740	108383740	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:108383740C>T	uc001pkk.2	-	6	2605	c.2494G>A	c.(2494-2496)GAA>AAA	p.E832K	EXPH5_uc010rvy.1_Missense_Mutation_p.E644K|EXPH5_uc010rvz.1_Missense_Mutation_p.E676K|EXPH5_uc010rwa.1_Missense_Mutation_p.E756K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	832					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		ACAGTTAATTCCTGGTGACAA	0.388													40	72					0	0	0.00195071	0	0
EXPH5	23086	broad.mit.edu	37	11	108385124	108385124	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:108385124G>A	uc001pkk.2	-	6	1221	c.1110C>T	c.(1108-1110)TCC>TCT	p.S370S	EXPH5_uc010rvy.1_Silent_p.S182S|EXPH5_uc010rvz.1_Silent_p.S214S|EXPH5_uc010rwa.1_Silent_p.S294S	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	370					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TCCATATGATGGATGATAAAG	0.468													44	103					0	0	0.00285205	0	0
NCAM1	4684	broad.mit.edu	37	11	113131041	113131041	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:113131041C>T	uc001pns.2	+	2	299	c.267C>T	c.(265-267)ATC>ATT	p.I89I				P13591	NCAM1_HUMAN	SubName: Full=cDNA FLJ52974, highly similar to Neural cell adhesion molecule 1, 140 kDa isoform;	709	Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		CCACAGCCATCCCAGGTATGG	0.522													19	33					0	0	0.00188189	0	0
TTC12	54970	broad.mit.edu	37	11	113233138	113233138	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:113233138C>T	uc001pnu.2	+	19	1735	c.1630C>T	c.(1630-1632)CTG>TTG	p.L544L	TTC12_uc001pnv.2_Silent_p.L550L|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Silent_p.L394L	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	544							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		TGCTGGTGTTCTGAGCCGGAC	0.438													53	100					0	0	0.000781405	0	0
ZW10	9183	broad.mit.edu	37	11	113629350	113629350	+	Missense_Mutation	SNP	G	A	A	rs145015648		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:113629350G>A	uc001poe.2	-	6	696	c.659C>T	c.(658-660)CCT>CTT	p.P220L	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	220	Interaction with RINT1.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		GGGTGGCATAGGGGTCTTCTC	0.383													10	16					0	0	0.000442599	0	0
HTR3A	3359	broad.mit.edu	37	11	113860388	113860388	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:113860388C>T	uc010rxb.1	+	8	1687	c.1454C>T	c.(1453-1455)TCC>TTC	p.S485F	HTR3A_uc010rxa.1_Missense_Mutation_p.S453F|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.S432F	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	447	HA-stretch.|Cytoplasmic (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	CGCGTGGGCTCCGTGCTGGAC	0.602													25	54					0	0	0.000586117	0	0
FAM55D	54827	broad.mit.edu	37	11	114441812	114441812	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:114441812G>A	uc001ppc.2	-	6	1664	c.1483C>T	c.(1483-1485)CAA>TAA	p.Q495*	FAM55D_uc001ppd.2_Nonsense_Mutation_p.Q211*	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	495						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		ATGAGATATTGAATGTAACCA	0.378													26	43					0	0	0.0024448	0	0
SIK3	23387	broad.mit.edu	37	11	116719919	116719919	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:116719919G>A	uc001ppy.2	-	21	3454	c.3418C>T	c.(3418-3420)CCA>TCA	p.P1140S	SIK3_uc001ppz.2_Missense_Mutation_p.P979S|SIK3_uc001pqa.2_Missense_Mutation_p.P1080S|SIK3_uc001ppw.2_Missense_Mutation_p.P497S|SIK3_uc001ppx.2_Missense_Mutation_p.P518S	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	1140						cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GGGCGTGCTGGGTACCCGAGC	0.582													160	258					0	0	0.000781405	0	0
CEP164	22897	broad.mit.edu	37	11	117280572	117280572	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:117280572C>T	uc001prc.2	+	30	4134	c.3987C>T	c.(3985-3987)CCC>CCT	p.P1329P	CEP164_uc001prb.2_Silent_p.P1324P|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Silent_p.P754P	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1329					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		CTGCTACACCCACGTCCACCC	0.637													34	83					0	0	0.000953801	0	0
NLRX1	79671	broad.mit.edu	37	11	119054017	119054017	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:119054017C>T	uc001pvu.2	+	10	3012	c.2797C>T	c.(2797-2799)CTT>TTT	p.L933F	NLRX1_uc001pvv.2_Intron|NLRX1_uc001pvw.2_Missense_Mutation_p.L933F|NLRX1_uc001pvx.2_Missense_Mutation_p.L933F|PDZD3_uc001pvy.2_5'Flank|PDZD3_uc001pvz.2_5'Flank|PDZD3_uc010rzd.1_5'Flank|PDZD3_uc001pwa.2_5'Flank|PDZD3_uc001pwb.2_5'Flank	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	933	Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		TCAGCGACACCTTGAGCTCCT	0.617													23	52					0	0	0.000720815	0	0
CBL	867	broad.mit.edu	37	11	119148881	119148881	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:119148881A>T	uc001pwe.2	+	8	1239	c.1101A>T	c.(1099-1101)CAA>CAT	p.Q367H		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	367	Asp/Glu-rich (acidic).|Linker.		Q -> P (in NSLL; causes impaired CBL- mediated degradation of cell-surface receptors in a dominant-negative fashion).		epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding	p.E366_Q409del(13)|p.Q367R(1)|p.E366_K477del(1)		haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		CAAAGGAACAATATGAATTAT	0.299									CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				18	24					0	0	0.000958276	0	0
PVRL1	5818	broad.mit.edu	37	11	119535808	119535808	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:119535808G>A	uc001pwv.2	-	6	1375	c.1203C>T	c.(1201-1203)AGC>AGT	p.S401S	PVRL1_uc001pwu.1_Intron	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	401	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		TGCCTGCCTTGCTGTAGCCGT	0.627													37	77					0	0	0.0025221	0	0
C11orf63	79864	broad.mit.edu	37	11	122774676	122774677	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:122774676_122774677CC>AA	uc001pym.2	+	3	685_686	c.388_389CC>AA	c.(388-390)CCG>AAG	p.P130K	C11orf63_uc001pyl.1_Missense_Mutation_p.P130K	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	130										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		CCGCTATGACCCGAACTGGAAG	0.475													9	204					0	0	6.4e-05	0	0
OR6X1	390260	broad.mit.edu	37	11	123624553	123624553	+	Missense_Mutation	SNP	C	T	T	rs140203672	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:123624553C>T	uc010rzy.1	-	1	674	c.674G>A	c.(673-675)CGA>CAA	p.R225Q		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TGAAGGAATTCGTAGGATTGC	0.473													19	31					0	0	0.00121646	0	0
OR4D5	219875	broad.mit.edu	37	11	123810527	123810527	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:123810527C>T	uc001pzk.1	+	1	204	c.204C>T	c.(202-204)TTC>TTT	p.F68F		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		ATCTTTCTTTCCTGGACTTTT	0.463													37	59					0	0	0.000953801	0	0
OR10G9	219870	broad.mit.edu	37	11	123894524	123894524	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:123894524G>A	uc010sad.1	+	1	805	c.805G>A	c.(805-807)GGA>AGA	p.G269R		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	269	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CGTCGTGGATGGAGTTGTGGC	0.502													31	70					0	0	0.000692331	0	0
OR10G8	219869	broad.mit.edu	37	11	123901097	123901097	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:123901097C>T	uc001pzp.1	+	1	768	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CTGGTCTTTTCATTTACCTGA	0.557													14	29					0	0	0.000308642	0	0
OR10G8	219869	broad.mit.edu	37	11	123901117	123901117	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:123901117C>T	uc001pzp.1	+	1	788	c.788C>T	c.(787-789)TCC>TTC	p.S263F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGGCCAGGCTCCAGGAAAGCT	0.532													23	38					0	0	0.00278032	0	0
VWA5A	4013	broad.mit.edu	37	11	124007856	124007856	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:124007856C>T	uc001pzu.2	+	15	1969	c.1760C>T	c.(1759-1761)GCT>GTT	p.A587V	VWA5A_uc001pzt.2_Missense_Mutation_p.A587V	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	587										upper_aerodigestive_tract(1)|ovary(1)	2						TCCTTCACAGCTTTCATTGCT	0.512													32	55					0	0	0.00283554	0	0
OR8D2	283160	broad.mit.edu	37	11	124189289	124189289	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:124189289C>T	uc010sah.1	-	1	805	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		TTCTCTTTTTCCATAGTAGTG	0.428													28	64					0	0	0.00209593	0	0
ROBO4	54538	broad.mit.edu	37	11	124767049	124767049	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:124767049G>A	uc001qbg.2	-	2	319	c.179C>T	c.(178-180)CCT>CTT	p.P60L	ROBO4_uc010sas.1_Intron|ROBO4_uc001qbh.2_Intron|ROBO4_uc010sat.1_5'Flank	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	60	Ig-like C2-type 1.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GATGGTGGGAGGTGGCTGGCC	0.672													6	8					0	0	0.00198382	0	0
ETS1	2113	broad.mit.edu	37	11	128354817	128354818	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:128354817_128354818GG>AA	uc010sbs.1	-	5	946_947	c.630_631CC>TT	c.(628-633)CTCCGA>CTTTGA	p.R211*	ETS1_uc001qej.2_Nonsense_Mutation_p.R255*|ETS1_uc009zch.2_Intron|ETS1_uc009zcg.2_Nonsense_Mutation_p.R211*	NM_005238	NP_005229	P14921	ETS1_HUMAN	v-ets erythroblastosis virus E26 oncogene	211					cell motility|immune response|induction of apoptosis|negative regulation of cell cycle|negative regulation of cell cycle|negative regulation of cell proliferation|PML body organization|positive regulation of cellular component movement|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|response to antibiotic|transcription from RNA polymerase II promoter	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding	p.R211*(1)		lung(4)|central_nervous_system(1)|pleura(1)	6	all_hematologic(175;0.0537)	Lung NSC(97;0.000542)|all_lung(97;0.000665)|Breast(109;0.00765)|all_neural(223;0.0351)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.47e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0174)|LUSC - Lung squamous cell carcinoma(976;0.0815)|Lung(307;0.0833)		AGAGGGTCTCGGAGAATGACCG	0.53													23	30					0	0	6.4e-05	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709328	128709328	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:128709328C>T	uc001qeo.1	-	2	919	c.868G>A	c.(868-870)GAC>AAC	p.D290N	KCNJ1_uc001qep.1_Missense_Mutation_p.D271N|KCNJ1_uc001qeq.1_Missense_Mutation_p.D271N|KCNJ1_uc001qer.1_Missense_Mutation_p.D271N|KCNJ1_uc001qes.1_Missense_Mutation_p.D271N	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	290	Cytoplasmic (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	AATTCAAAGTCCTGCTGGAGA	0.478													8	49					0	0	0.000274275	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128848675	128848675	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:128848675C>T	uc009zcp.2	-	18	2070	c.2070G>A	c.(2068-2070)ATG>ATA	p.M690I	ARHGAP32_uc009zcq.1_Missense_Mutation_p.M650I|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.M341I	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	690					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CTTTCAGAGCCATGGCTTTCA	0.473													13	22					0	0	0.000422831	0	0
NFRKB	4798	broad.mit.edu	37	11	129752435	129752435	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:129752435C>T	uc001qfi.2	-	10	1194	c.993G>A	c.(991-993)GAG>GAA	p.E331E	NFRKB_uc001qfg.2_Silent_p.E356E|NFRKB_uc001qfh.2_Silent_p.E354E|NFRKB_uc010sbw.1_Silent_p.E343E	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	331					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		CGGCCAGGTCCTCTGCCTCTG	0.468													40	56					0	0	0.000953801	0	0
PRDM10	56980	broad.mit.edu	37	11	129780471	129780471	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:129780471G>A	uc001qfm.2	-	20	3307	c.3075C>T	c.(3073-3075)TCC>TCT	p.S1025S	PRDM10_uc001qfj.2_Silent_p.S926S|PRDM10_uc001qfk.2_Silent_p.S888S|PRDM10_uc001qfl.2_Silent_p.S939S|PRDM10_uc010sbx.1_Silent_p.S935S|PRDM10_uc001qfn.2_Silent_p.S1021S	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	1012	Gln-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		GCCCCTGTGTGGAAGAACTGC	0.517													16	20					0	0	0.000422831	0	0
NTM	50863	broad.mit.edu	37	11	132016308	132016308	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr11:132016308C>T	uc001qgp.2	+	2	964	c.300C>T	c.(298-300)ATC>ATT	p.I100I	NTM_uc001qgm.2_Silent_p.I100I|NTM_uc010sch.1_Silent_p.I91I|NTM_uc010sci.1_Silent_p.I100I|NTM_uc010scj.1_Silent_p.I59I|NTM_uc001qgo.2_Silent_p.I100I|NTM_uc001qgq.2_Silent_p.I100I	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	100	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						AGTACAGCATCGAGATCCAGA	0.557													13	30					0	0	0.00136819	0	0
CACNA1C	775	broad.mit.edu	37	12	2622102	2622102	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:2622102G>A	uc009zdu.1	+	9	1655	c.1342G>A	c.(1342-1344)GAT>AAT	p.D448N	CACNA1C_uc009zdv.1_Missense_Mutation_p.D445N|CACNA1C_uc001qkb.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkc.2_Missense_Mutation_p.D448N|CACNA1C_uc001qke.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkf.2_Missense_Mutation_p.D448N|CACNA1C_uc001qjz.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkd.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkg.2_Missense_Mutation_p.D448N|CACNA1C_uc009zdw.1_Missense_Mutation_p.D448N|CACNA1C_uc001qkh.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkl.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkn.2_Missense_Mutation_p.D448N|CACNA1C_uc001qko.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkp.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkr.2_Missense_Mutation_p.D448N|CACNA1C_uc001qku.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkq.2_Missense_Mutation_p.D448N|CACNA1C_uc001qks.2_Missense_Mutation_p.D448N|CACNA1C_uc001qkt.2_Missense_Mutation_p.D448N|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Missense_Mutation_p.D184N|CACNA1C_uc001qkj.1_Missense_Mutation_p.D184N|CACNA1C_uc001qkk.1_Missense_Mutation_p.D184N|CACNA1C_uc001qkm.1_Missense_Mutation_p.D184N|CACNA1C_uc009zdy.1_Missense_Mutation_p.D73N|CACNA1C_uc001qkv.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	448	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CGAAGACATCGATCCTGAGAA	0.567													5	9					0	0	0.000602214	0	0
ITFG2	55846	broad.mit.edu	37	12	2933279	2933279	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:2933279C>T	uc001qlb.1	+	12	1328	c.1264C>T	c.(1264-1266)CGT>TGT	p.R422C	ITFG2_uc010seb.1_Missense_Mutation_p.R245C|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	422											0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			CCCTGTGACTCGTGCCCTGCT	0.602													39	59					0	0	0.000781405	0	0
KCNA6	3742	broad.mit.edu	37	12	4919931	4919931	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:4919931G>A	uc001qng.2	+	1	1590	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	242						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CACCCCTGGGGAAATGGGGAC	0.557										HNSCC(72;0.22)			31	69					0	0	0.000953801	0	0
KCNA1	3736	broad.mit.edu	37	12	5021025	5021025	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:5021025G>A	uc001qnh.2	+	2	1586	c.481G>A	c.(481-483)GAG>AAG	p.E161K		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	161					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CGAGTACCCCGAGAGCTCGGG	0.627													27	60					0	0	0.0024448	0	0
ANO2	57101	broad.mit.edu	37	12	5941763	5941763	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:5941763C>T	uc001qnm.2	-	5	700	c.628G>A	c.(628-630)GAG>AAG	p.E210K		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	215	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GCTTTGATCTCGTACATCTAT	0.517													5	7					0	0	0.000602214	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6426513	6426513	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:6426513G>A	uc001qnr.2	+	8	949	c.801G>A	c.(799-801)GTG>GTA	p.V267V	PLEKHG6_uc001qns.2_Silent_p.V267V|PLEKHG6_uc010sew.1_Silent_p.V267V|PLEKHG6_uc010sex.1_Silent_p.V235V	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	267	DH.				regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						GCCTCCGAGTGAAGCAGACCA	0.597													12	37					0	0	0.000308642	0	0
ACSM4	341392	broad.mit.edu	37	12	7457123	7457123	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:7457123G>A	uc001qsx.1	+	1	196	c.196G>A	c.(196-198)GAG>AAG	p.E66K		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	66					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GTCCCAAAAGGAGAAGGTATA	0.453													12	23					0	0	0.00136819	0	0
CD163L1	283316	broad.mit.edu	37	12	7522042	7522042	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:7522042C>T	uc001qsy.2	-	15	3976	c.3950G>A	c.(3949-3951)GGA>GAA	p.G1317E	CD163L1_uc010sge.1_Missense_Mutation_p.G1327E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1317	SRCR 12.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TGACTCATTTCCTTTGCACCG	0.557													26	55					0	0	0.000586117	0	0
CD163	9332	broad.mit.edu	37	12	7635987	7635987	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:7635987C>T	uc001qsz.3	-	12	3192	c.3064G>A	c.(3064-3066)GAA>AAA	p.E1022K	CD163_uc001qta.3_Missense_Mutation_p.E1022K|CD163_uc009zfw.2_Missense_Mutation_p.E1055K	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1022	SRCR 9.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GCAGCGTCTTCCTTGTGCCCA	0.522													7	14					0	0	0.000274275	0	0
APOBEC1	339	broad.mit.edu	37	12	7803668	7803668	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:7803668G>A	uc001qtb.2	-	4	546	c.512C>T	c.(511-513)CCA>CTA	p.P171L	APOBEC1_uc001qtc.2_Missense_Mutation_p.P126L|APOBEC1_uc010sgf.1_Missense_Mutation_p.P171L	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	171					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						CCACAGAGGTGGGTATTGTGG	0.438													45	67					0	0	0.000680045	0	0
C3AR1	719	broad.mit.edu	37	12	8212126	8212126	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:8212126T>A	uc001qtv.1	-	2	748	c.656A>T	c.(655-657)AAT>ATT	p.N219I		NM_004054	NP_004045	Q16581	C3AR_HUMAN	complement component 3a receptor 1	219	Extracellular (Potential).				blood circulation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response	integral to plasma membrane	C3a anaphylatoxin receptor activity|complement component C3a receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)	1				Kidney(36;0.0893)		AGGATGATCATTTGTTTGGAA	0.428													31	55					0	0	0.00178596	0	0
LOC653113	653113	broad.mit.edu	37	12	8386955	8386955	+	RNA	SNP	T	C	C	rs75997195		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:8386955T>C	uc010sgk.1	-	4		c.501A>G				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						CTTGTGCTCCTGGCAGGCAGC	0.612													4	74					0	0	0.00024832	0	0
STYK1	55359	broad.mit.edu	37	12	10775235	10775235	+	Splice_Site	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:10775235A>C	uc001qys.2	-	9	1488	c.967_splice	c.e9+1	p.G323_splice		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1							integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						GCTCATCCTTACCTAGAGTCA	0.388										HNSCC(73;0.22)			21	37					0	0	0.00047179	0	0
MANSC1	54682	broad.mit.edu	37	12	12483765	12483765	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:12483765G>A	uc001rai.1	-	4	750	c.492C>T	c.(490-492)ACC>ACT	p.T164T	MANSC1_uc010shm.1_Silent_p.T98T|MANSC1_uc001raj.1_Silent_p.T130T|MANSC1_uc009zht.1_Silent_p.T83T	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	164	Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		ATGAGATATCGGTGGGCTTTG	0.453													25	59					0	0	0.000720815	0	0
KIAA1467	57613	broad.mit.edu	37	12	13224237	13224237	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:13224237G>T	uc001rbi.2	+	10	1454	c.1431G>T	c.(1429-1431)ATG>ATT	p.M477I	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	477						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		CGTGTCACATGAAAGAAACGC	0.517													29	55					3.80469e-20	1.35322e-19	0.00178596	1	0
PLCZ1	89869	broad.mit.edu	37	12	18872434	18872434	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:18872434G>A	uc010sid.1	-	5	691	c.500C>T	c.(499-501)TCA>TTA	p.S167L	PLCZ1_uc001rdv.3_Missense_Mutation_p.S63L|PLCZ1_uc001rdw.3_Intron|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	167	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					ATGTGAAGATGAAATAAAATA	0.259													15	25					0	0	0.000308642	0	0
PLCZ1	89869	broad.mit.edu	37	12	18876287	18876287	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:18876287T>A	uc010sid.1	-	4	516	c.325A>T	c.(325-327)ATT>TTT	p.I109F	PLCZ1_uc001rdv.3_Missense_Mutation_p.I5F|PLCZ1_uc001rdw.3_Intron	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	109					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					TCAAAAGCAATAGCTTTACTC	0.318													8	16					0	0	0.000274275	0	0
PDE3A	5139	broad.mit.edu	37	12	20790115	20790115	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:20790115C>T	uc001reh.1	+	9	2105	c.2083C>T	c.(2083-2085)CCA>TCA	p.P695S		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	695					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TTGGAATTTTCCAATTTTTGA	0.333													10	17					0	0	0.00185496	0	0
GYS2	2998	broad.mit.edu	37	12	21757457	21757457	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:21757457G>A	uc001rfb.2	-	1	325	c.70C>T	c.(70-72)CCT>TCT	p.P24S		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	24					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCCTCCACAGGAAGTTCTTCG	0.502													9	29					0	0	0.000442599	0	0
ABCC9	10060	broad.mit.edu	37	12	21995316	21995316	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:21995316G>A	uc001rfi.1	-	27	3425	c.3405C>T	c.(3403-3405)TTC>TTT	p.F1135F	ABCC9_uc001rfh.2_Silent_p.F1135F|ABCC9_uc001rfj.1_Silent_p.F1099F	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1135	Helical; Name=14; (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GAGCAACCAGGAACACAGGAG	0.448													12	26					0	0	0.000978159	0	0
ABCC9	10060	broad.mit.edu	37	12	22047080	22047080	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:22047080C>T	uc001rfi.1	-	12	1708	c.1688G>A	c.(1687-1689)GGA>GAA	p.G563E	ABCC9_uc001rfh.2_Missense_Mutation_p.G563E|ABCC9_uc001rfj.1_Missense_Mutation_p.G563E	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	563	Extracellular (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAGATTGTTTCCACTGGCATA	0.468													23	32					0	0	0.000720815	0	0
C12orf11	55726	broad.mit.edu	37	12	27070630	27070630	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:27070630G>A	uc001rhk.3	-	9	1463	c.926C>T	c.(925-927)TCG>TTG	p.S309L	C12orf11_uc001rhj.3_5'UTR|C12orf11_uc010sjk.1_Missense_Mutation_p.S208L	NM_018164	NP_060634	Q9NVM9	M89BB_HUMAN	hypothetical protein LOC55726	309					cell division|mitosis|regulation of mitotic cell cycle		protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	Colorectal(261;0.0847)					TTCTTTAAACGAGCCTTCTCG	0.279													24	38					0	0	0.000878237	0	0
C12orf35	55196	broad.mit.edu	37	12	32137514	32137515	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:32137514_32137515CC>TT	uc001rks.2	+	4	4039_4040	c.3625_3626CC>TT	c.(3625-3627)CCT>TTT	p.P1209F	C12orf35_uc001rkt.2_5'Flank	NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	1209										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			GCAGTGTTCTCCTTTGGATACC	0.421													19	24					0	0	6.4e-05	0	0
PKP2	5318	broad.mit.edu	37	12	32996197	32996197	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:32996197G>A	uc001rlj.3	-	6	1544	c.1429C>T	c.(1429-1431)CAC>TAC	p.H477Y	PKP2_uc001rlk.3_Intron|PKP2_uc010skj.1_Intron	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	477					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ttacaggcgtgagccaccgcg	0.179													17	29					0	0	0.000422831	0	0
SYT10	341359	broad.mit.edu	37	12	33538208	33538208	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:33538208C>T	uc001rll.1	-	4	1393	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	SYT10_uc009zju.1_Missense_Mutation_p.E176K	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	366	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					AACATGATTTCACCCAGGTCT	0.398													9	15					0	0	0.000442599	0	0
SYT10	341359	broad.mit.edu	37	12	33559843	33559843	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:33559843C>T	uc001rll.1	-	3	1255	c.958G>A	c.(958-960)GAT>AAT	p.D320N	SYT10_uc009zju.1_Missense_Mutation_p.D130N	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	320	Cytoplasmic (Potential).|C2 1.	Calcium 2 (By similarity).|Calcium 1 (By similarity).				cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					CTGTCAAAATCATACACACTG	0.363													20	28					0	0	0.00121646	0	0
SYT10	341359	broad.mit.edu	37	12	33560282	33560283	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:33560282_33560283GG>AA	uc001rll.1	-	3	815_816	c.518_519CC>TT	c.(517-519)TCC>TTT	p.S173F	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	173	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					GTCTTCGGAAGGAACTGTGGCT	0.441													26	58					0	0	6.4e-05	0	0
ABCD2	225	broad.mit.edu	37	12	40012889	40012889	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:40012889T>C	uc001rmb.2	-	1	955	c.529A>G	c.(529-531)ACT>GCT	p.T177A		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	177	ABC transmembrane type-1.|Interaction with PEX19.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						ACTAGGCGAGTTCTGAAGGCC	0.423													26	66					0	0	0.00209593	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42863329	42863329	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:42863329G>A	uc010skv.1	-	4	594	c.307C>T	c.(307-309)CAG>TAG	p.Q103*	PRICKLE1_uc001rnl.2_Nonsense_Mutation_p.Q103*|PRICKLE1_uc010skw.1_Nonsense_Mutation_p.Q103*|PRICKLE1_uc001rnm.2_Nonsense_Mutation_p.Q103*|PRICKLE1_uc009zka.2_Nonsense_Mutation_p.Q99*	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	103	PET.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		TTCTTCCGCTGAGCACTGAAC	0.488													19	32					0	0	0.000958276	0	0
ARID2	196528	broad.mit.edu	37	12	46244517	46244517	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:46244517C>T	uc001ros.1	+	15	2611	c.2611C>T	c.(2611-2613)CAG>TAG	p.Q871*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q871*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q327*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q498*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q205*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	871	Gln-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		ACAGAATTTTCAGGTAGCTAC	0.448													20	35					0	0	0.00121646	0	0
SLC38A4	55089	broad.mit.edu	37	12	47182344	47182344	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:47182344C>T	uc001rpi.2	-	4	576	c.177G>A	c.(175-177)GGG>GGA	p.G59G	SLC38A4_uc001rpj.2_Silent_p.G59G|SLC38A4_uc009zkl.2_Silent_p.G59G	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	59	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					GCTTCTTTTTCCCCAAAAATC	0.393													15	48					0	0	0.000566183	0	0
COL2A1	1280	broad.mit.edu	37	12	48374406	48374406	+	Silent	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:48374406T>A	uc001rqu.2	-	39	2737	c.2556A>T	c.(2554-2556)GGA>GGT	p.G852G	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Silent_p.G783G	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	852	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGCCGGCCTCTCCTTGCTCAC	0.617													5	19					0	0	0.00116845	0	0
MLL2	8085	broad.mit.edu	37	12	49436573	49436573	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:49436573G>A	uc001rta.3	-	26	5733	c.5733C>T	c.(5731-5733)ACC>ACT	p.T1911T		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1911					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CTAGGCCAGGGGTTCCACAAC	0.542			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			41	58					0	0	0.00195071	0	0
ACCN2	41	broad.mit.edu	37	12	50453566	50453566	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:50453566G>A	uc001rvw.2	+	3	616	c.387G>A	c.(385-387)ATG>ATA	p.M129I	ACCN2_uc001rvv.2_Missense_Mutation_p.M129I|ACCN2_uc009zln.2_5'UTR|ACCN2_uc009zlo.2_Missense_Mutation_p.M129I	NM_001095	NP_001086	P78348	ACCN2_HUMAN	amiloride-sensitive cation channel 2, neuronal	129	Extracellular (By similarity).				calcium ion transport|response to pH|signal transduction	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(1)	1					Amiloride(DB00594)	ACACACAGATGGCAGATGAAA	0.552													11	10					0	0	0.000978159	0	0
SCN8A	6334	broad.mit.edu	37	12	52100395	52100395	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:52100395G>A	uc001ryw.2	+	11	1709	c.1531G>A	c.(1531-1533)GAT>AAT	p.D511N	SCN8A_uc010snl.1_Missense_Mutation_p.D376N|SCN8A_uc001ryx.1_Missense_Mutation_p.D376N|SCN8A_uc001ryz.1_Missense_Mutation_p.D376N|SCN8A_uc001ryy.2_Missense_Mutation_p.D376N	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	511					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	GGAGAAAGGGGATCCCGAGAA	0.448													3	6					0	0	0.00024832	0	0
KRT7	3855	broad.mit.edu	37	12	52642480	52642480	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:52642480C>T	uc001saa.1	+	9	1473	c.1346C>T	c.(1345-1347)CCT>CTT	p.P449L	KRT86_uc010snq.1_5'Flank	NM_005556	NP_005547	P08729	K2C7_HUMAN	keratin 7	449	Tail.				cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.105)		AGTGCGGGTCCTGGGCTCCTG	0.647													25	28					0	0	0.000720815	0	0
KRT5	3852	broad.mit.edu	37	12	52913627	52913627	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:52913627G>A	uc001san.2	-	1	617	c.454C>T	c.(454-456)CCC>TCC	p.P152S	KRT5_uc009zmh.2_Missense_Mutation_p.P152S	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	152	Head.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		AGGTTGAGGGGAGTCAGGAGA	0.498													31	51					0	0	0.000692331	0	0
KRT2	3849	broad.mit.edu	37	12	53044244	53044244	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:53044244G>A	uc001sat.2	-	2	712	c.679C>T	c.(679-681)CCC>TCC	p.P227S		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	227	Linker 1.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		TGGAAGATGGGCTCCAGGTTG	0.502													42	78					0	0	0.000781405	0	0
OR6C2	341416	broad.mit.edu	37	12	55846846	55846846	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:55846846G>A	uc001sgz.1	+	1	849	c.849G>A	c.(847-849)TTG>TTA	p.L283L		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CACCCTTGTTGAACCCCTTCA	0.408													12	25					0	0	0.000978159	0	0
OR6C4	341418	broad.mit.edu	37	12	55945146	55945146	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:55945146C>T	uc010spp.1	+	1	136	c.136C>T	c.(136-138)CTC>TTC	p.L46F		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	46	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATTATCACCCTCACCTTACT	0.418													30	57					0	0	0.000692331	0	0
MYO1A	4640	broad.mit.edu	37	12	57435264	57435264	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:57435264C>T	uc001smw.3	-	13	1359	c.1116G>A	c.(1114-1116)AAG>AAA	p.K372K	MYO1A_uc010sqz.1_Silent_p.K210K|MYO1A_uc009zpd.2_Silent_p.K372K	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	372	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						TTACCTTCTTCTTTTCCCCGA	0.537													26	50					0	0	0.00127121	0	0
LRP1	4035	broad.mit.edu	37	12	57592276	57592276	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:57592276C>T	uc001snd.2	+	60	9965	c.9499C>T	c.(9499-9501)CAT>TAT	p.H3167Y		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3167	LDL-receptor class B 28.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CTGGGGTGACCATTCACTGAT	0.617													8	23					0	0	0.000442599	0	0
SLC26A10	65012	broad.mit.edu	37	12	58016861	58016861	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:58016861C>T	uc001spe.2	+	7	1305	c.994C>T	c.(994-996)CCC>TCC	p.P332S	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_5'Flank	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	332						integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					CTCTTGCTTTCCCAACTCGGC	0.547													116	179					0	0	0.000781405	0	0
METTL1	4234	broad.mit.edu	37	12	58162854	58162854	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:58162854G>A	uc010ssd.1	-	6	804	c.756C>T	c.(754-756)TTC>TTT	p.F252F	CYP27B1_uc001spz.1_5'Flank|CYP27B1_uc001sqa.1_5'Flank|METTL1_uc009zqc.2_3'UTR	NM_005371	NP_005362	Q9UBP6	TRMB_HUMAN	methyltransferase-like protein 1 isoform a	252						cytoplasm|nucleus	protein binding|tRNA (guanine-N7-)-methyltransferase activity|tRNA binding				0	all_cancers(7;6.73e-81)|Lung NSC(6;1.07e-25)|all_lung(6;8.25e-24)|all_epithelial(6;4.6e-17)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.211)			AGATGGCTGGGAAATTCTTCC	0.537													17	44					0	0	0.000422831	0	0
IL22	50616	broad.mit.edu	37	12	68646579	68646579	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:68646579G>A	uc001sty.1	-	2	270	c.217C>T	c.(217-219)CGT>TGT	p.R73C	IL22_uc010stb.1_Missense_Mutation_p.R73C	NM_020525	NP_065386	Q9GZX6	IL22_HUMAN	interleukin 22 precursor	73					acute-phase response	extracellular space	cytokine activity|interleukin-22 receptor binding				0		Myeloproliferative disorder(1001;0.0255)	Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;5.06e-05)|BRCA - Breast invasive adenocarcinoma(357;0.00104)		CCAATGAGACGAACGTCTGTG	0.463													30	53					0	0	0.00058488	0	0
BEST3	144453	broad.mit.edu	37	12	70066703	70066703	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:70066703C>T	uc001svg.2	-	8	1137	c.910G>A	c.(910-912)GAT>AAT	p.D304N	BEST3_uc001svd.1_Missense_Mutation_p.D304N|BEST3_uc001sve.1_RNA|BEST3_uc001svf.2_Missense_Mutation_p.D91N|BEST3_uc010stm.1_Missense_Mutation_p.D198N|BEST3_uc001svh.2_Missense_Mutation_p.D91N	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	304	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GTTTCAAAATCATCATCATCT	0.259													10	26					0	0	0.00185496	0	0
LGR5	8549	broad.mit.edu	37	12	71960479	71960479	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:71960479C>T	uc001swl.2	+	10	1045	c.997C>T	c.(997-999)CTG>TTG	p.L333L	LGR5_uc001swm.2_Silent_p.L309L|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	333	Extracellular (Potential).|LRR 12.					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						CCTGGAGAGTCTGTAAGTACT	0.398													108	191					0	0	0.000781405	0	0
TPH2	121278	broad.mit.edu	37	12	72338106	72338106	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:72338106C>T	uc009zrw.1	+	3	429	c.288C>T	c.(286-288)TCC>TCT	p.S96S	TPH2_uc001swy.2_Silent_p.S6S	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	96	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	ATATTGAATCCAGGAAATCTC	0.403													10	32					0	0	0.000673444	0	0
TRHDE	29953	broad.mit.edu	37	12	72969126	72969126	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:72969126G>A	uc001sxa.2	+	11	2118	c.2088G>A	c.(2086-2088)AGG>AGA	p.R696R		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	696	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ATGACCTAAGGAACTGGAGAT	0.363													12	28					0	0	0.00185496	0	0
TRHDE	29953	broad.mit.edu	37	12	73046870	73046870	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:73046870G>A	uc001sxa.2	+	17	2813	c.2783G>A	c.(2782-2784)CGA>CAA	p.R928Q		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	928	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						CATGTAGCTCGAAATCCACAT	0.353													17	25					0	0	0.000566183	0	0
NAV3	89795	broad.mit.edu	37	12	78583938	78583938	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:78583938C>T	uc001syp.2	+	34	6403	c.6230C>T	c.(6229-6231)TCT>TTT	p.S2077F	NAV3_uc001syo.2_Missense_Mutation_p.S2055F|NAV3_uc010sub.1_Missense_Mutation_p.S1534F|NAV3_uc009zsf.2_Missense_Mutation_p.S886F	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2077						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ATAACCAAATCTGGAAGGAAA	0.373										HNSCC(70;0.22)			14	17					0	0	0.00244969	0	0
MYF5	4617	broad.mit.edu	37	12	81112737	81112737	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:81112737G>C	uc001szg.2	+	3	810	c.675G>C	c.(673-675)CAG>CAC	p.Q225H		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	225					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						TGCCTCTCCAGGATCTGGCTT	0.483													32	42					0	0	0.0024448	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373394	86373394	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:86373394C>T	uc001tai.3	-	8	2360	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	MGAT4C_uc001tal.3_Silent_p.G370G|MGAT4C_uc001taj.3_Silent_p.G370G|MGAT4C_uc001tak.3_Silent_p.G370G|MGAT4C_uc010sum.1_Silent_p.G394G|MGAT4C_uc001tah.3_Silent_p.G370G	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	370	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						AAGGTGGTTTCCCCCAAAAGT	0.353													9	7					0	0	0.000274275	0	0
MGAT4C	25834	broad.mit.edu	37	12	86383208	86383208	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:86383208C>T	uc001tai.3	-	6	1367	c.117G>A	c.(115-117)ATG>ATA	p.M39I	MGAT4C_uc001tal.3_Missense_Mutation_p.M39I|MGAT4C_uc001taj.3_Missense_Mutation_p.M39I|MGAT4C_uc001tak.3_Missense_Mutation_p.M39I|MGAT4C_uc010sum.1_Missense_Mutation_p.M63I|MGAT4C_uc001tah.3_Missense_Mutation_p.M39I	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	39	Helical; Signal-anchor for type II membrane protein; (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TGTACAAGTTCATAAAAAGGA	0.323													9	23					0	0	0.000274275	0	0
GALNT4	8693	broad.mit.edu	37	12	89917128	89917128	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:89917128G>A	uc001tbd.2	-	1	1408	c.1199C>T	c.(1198-1200)CCA>CTA	p.P400L	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Missense_Mutation_p.P397L|GALNT4_uc010suo.1_Missense_Mutation_p.P92L	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	400	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						TTTTCTTGCTGGAGGGTTTCT	0.423													35	66					0	0	0.000953801	0	0
LUM	4060	broad.mit.edu	37	12	91502681	91502681	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:91502681G>A	uc001tbm.2	-	2	465	c.76C>T	c.(76-78)CCC>TCC	p.P26S	LUM_uc001tbn.2_Intron	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	26					collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						ATTGATAGGGGAAAATCATAA	0.413													13	27					0	0	0.00185496	0	0
ANO4	121601	broad.mit.edu	37	12	101295594	101295594	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:101295594G>A	uc010svm.1	+	2	603	c.31G>A	c.(31-33)GGA>AGA	p.G11R	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.G11R|ANO4_uc001thx.2_Missense_Mutation_p.G11R	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	11	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AATCACTAATGGAAAAACCAA	0.498										HNSCC(74;0.22)			33	72					0	0	0.00283554	0	0
MYBPC1	4604	broad.mit.edu	37	12	102025377	102025377	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:102025377C>A	uc001tii.2	+	5	345	c.243C>A	c.(241-243)GTC>GTA	p.V81V	MYBPC1_uc001tif.1_Silent_p.V94V|MYBPC1_uc001tig.2_Silent_p.V106V|MYBPC1_uc010svq.1_Silent_p.V68V|MYBPC1_uc001tih.2_Silent_p.V106V|MYBPC1_uc001tij.2_Silent_p.V81V|MYBPC1_uc010svr.1_Silent_p.V81V|MYBPC1_uc010svs.1_Silent_p.V81V|MYBPC1_uc010svt.1_Silent_p.V69V|MYBPC1_uc010svu.1_Silent_p.V81V|MYBPC1_uc001tik.2_Silent_p.V55V	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	81	Ig-like C2-type 1.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TAGCCAAAGTCAAGGCTGAAG	0.438													53	69					2.69953e-25	9.60532e-25	0.000781405	1	0
MYBPC1	4604	broad.mit.edu	37	12	102040583	102040583	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:102040583C>T	uc001tii.2	+	11	1035	c.933C>T	c.(931-933)ATC>ATT	p.I311I	MYBPC1_uc001tif.1_Silent_p.I324I|MYBPC1_uc001tig.2_Silent_p.I336I|MYBPC1_uc010svq.1_Silent_p.I298I|MYBPC1_uc001tih.2_Silent_p.I336I|MYBPC1_uc001tij.2_Silent_p.I311I|MYBPC1_uc010svr.1_Silent_p.I311I|MYBPC1_uc010svs.1_Silent_p.I311I|MYBPC1_uc010svt.1_Silent_p.I299I|MYBPC1_uc010svu.1_Silent_p.I292I|MYBPC1_uc001tik.2_Silent_p.I285I	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	311	Ig-like C2-type 2.			HKGCQRILFIN -> DTRCQSILNID (in Ref. 1; CAA46987).	cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TCCTGTTTATCAATAACTGTC	0.348													32	36					0	0	0.00283554	0	0
MYBPC1	4604	broad.mit.edu	37	12	102071169	102071169	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:102071169G>A	uc001tii.2	+	26	3187	c.3085G>A	c.(3085-3087)GAT>AAT	p.D1029N	MYBPC1_uc001tig.2_Missense_Mutation_p.D1036N|MYBPC1_uc010svq.1_Missense_Mutation_p.D998N|MYBPC1_uc001tih.2_Missense_Mutation_p.D1036N|MYBPC1_uc001tij.2_Missense_Mutation_p.D1011N|MYBPC1_uc010svr.1_Missense_Mutation_p.D1011N|MYBPC1_uc010svs.1_Missense_Mutation_p.D1029N|MYBPC1_uc010svt.1_Missense_Mutation_p.D999N|MYBPC1_uc010svu.1_Missense_Mutation_p.D992N|MYBPC1_uc001tik.2_Missense_Mutation_p.D985N|MYBPC1_uc001til.2_Missense_Mutation_p.D54N|MYBPC1_uc001tim.2_Missense_Mutation_p.D54N	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	1029					cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						GATCGCCAGGGATGGTGAGTT	0.448													14	19					0	0	0.000308642	0	0
NUAK1	9891	broad.mit.edu	37	12	106500239	106500239	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:106500239C>T	uc001tlj.1	-	2	1685	c.305G>A	c.(304-306)CGA>CAA	p.R102Q		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	102	Protein kinase.						ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						CTCAATCTCTCGTCTGATGTG	0.343													16	20					0	0	0.000308642	0	0
BTBD11	121551	broad.mit.edu	37	12	108008871	108008871	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:108008871C>T	uc001tmk.1	+	7	2454	c.1933C>T	c.(1933-1935)CAC>TAC	p.H645Y	BTBD11_uc009zut.1_Missense_Mutation_p.H645Y|BTBD11_uc001tmj.2_Missense_Mutation_p.H645Y|BTBD11_uc001tml.1_Missense_Mutation_p.H182Y	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	645						integral to membrane	DNA binding			skin(2)|ovary(1)	3						TCCATCCGTCCACCCCGAGAC	0.413													31	43					0	0	0.000692331	0	0
ACACB	32	broad.mit.edu	37	12	109604784	109604784	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:109604784C>T	uc001tob.2	+	3	891	c.772C>T	c.(772-774)CGG>TGG	p.R258W	ACACB_uc001toc.2_Missense_Mutation_p.R258W	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	258					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TGGGGGGGATCGGGTCATCGA	0.547													14	25					0	0	0.00185496	0	0
UBE3B	89910	broad.mit.edu	37	12	109928893	109928893	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:109928893C>T	uc001top.2	+	9	1277	c.674C>T	c.(673-675)TCC>TTC	p.S225F	UBE3B_uc001toq.2_Missense_Mutation_p.S225F|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Missense_Mutation_p.S225F	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	225					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						CCTTGTCTATCCAAAGGCACT	0.413													29	51					0	0	0.000953801	0	0
ANKRD13A	88455	broad.mit.edu	37	12	110457005	110457005	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:110457005C>T	uc001tpx.2	+	6	865	c.606C>T	c.(604-606)TTC>TTT	p.F202F	ANKRD13A_uc009zvl.1_RNA|ANKRD13A_uc009zvm.1_Silent_p.F202F|ANKRD13A_uc010sxw.1_Silent_p.F202F	NM_033121	NP_149112	Q8IZ07	AN13A_HUMAN	ankyrin repeat domain 13	202											0						CCGAACGCTTCGACCTTTCCC	0.488													43	59					0	0	0.000680045	0	0
CUX2	23316	broad.mit.edu	37	12	111652091	111652091	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:111652091G>A	uc001tsa.1	+	2	304	c.151G>A	c.(151-153)GAA>AAA	p.E51K	CUX2_uc001tsb.1_Missense_Mutation_p.E106K	NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	51						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						ACTCCGCCGGGAATTTAAGAA	0.383													28	53					0	0	0.00106085	0	0
PTPN11	5781	broad.mit.edu	37	12	112924331	112924331	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:112924331A>T	uc001ttx.2	+	11	1657	c.1277A>T	c.(1276-1278)CAC>CTC	p.H426L	PTPN11_uc001ttw.1_Missense_Mutation_p.H426L	NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	430	Tyrosine-protein phosphatase.				axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding			haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						TGGCCGGACCACGGCGTGCCC	0.567			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				14	36					0	0	0.000308642	0	0
RNFT2	84900	broad.mit.edu	37	12	117217114	117217114	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:117217114C>T	uc009zwn.2	+	7	1076	c.843C>T	c.(841-843)ATC>ATT	p.I281I	RNFT2_uc001twb.3_Silent_p.I281I|RNFT2_uc001twa.3_Silent_p.I191I|RNFT2_uc001twc.3_Silent_p.I29I	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	281	Cytoplasmic (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		AGTGCCTCATCGTGGCCCTGC	0.552													15	25					0	0	0.000308642	0	0
PEBP1	5037	broad.mit.edu	37	12	118575869	118575869	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:118575869C>T	uc001twu.1	+	2	306	c.161C>T	c.(160-162)TCG>TTG	p.S54L	PEBP1_uc010szc.1_Missense_Mutation_p.S54L	NM_002567	NP_002558	P30086	PEBP1_HUMAN	prostatic binding protein	54							ATP binding|phosphatidylethanolamine binding|serine-type endopeptidase inhibitor activity			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACCAGCATTTCGTGGGATGGT	0.418								Direct_reversal_of_damage					6	30					0	0	0.000157383	0	0
GCN1L1	10985	broad.mit.edu	37	12	120594775	120594775	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:120594775G>A	uc001txo.2	-	27	3122	c.3109C>T	c.(3109-3111)CGC>TGC	p.R1037C		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1037					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ATGGCCACGCGAGGCAGCAAC	0.602													21	36					0	0	0.00278032	0	0
MORN3	283385	broad.mit.edu	37	12	122091164	122091164	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:122091164C>T	uc001uax.2	-	4	636	c.465G>A	c.(463-465)AAG>AAA	p.K155K	MORN3_uc001uay.2_Intron	NM_173855	NP_776254	Q6PF18	MORN3_HUMAN	MORN repeat containing 3	155	MORN 5.										0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000409)|Epithelial(86;0.00145)		GGTTCCCGTTCTCTGGGGGAA	0.567													12	23					0	0	0.000308642	0	0
CLIP1	6249	broad.mit.edu	37	12	122812709	122812709	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:122812709C>T	uc001ucg.1	-	16	3140	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	CLIP1_uc001uch.1_Missense_Mutation_p.E1001K|CLIP1_uc001uci.1_Missense_Mutation_p.E966K|CLIP1_uc001ucj.1_Missense_Mutation_p.E587K	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1012	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		ATTTTCTTTTCCTGCAGAGAC	0.493													15	98					0	0	0.000422831	0	0
ZCCHC8	55596	broad.mit.edu	37	12	122964820	122964821	+	Nonsense_Mutation	DNP	GT	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:122964820_122964821GT>AA	uc001ucn.2	-	11	1187_1188	c.1056_1057AC>TT	c.(1054-1059)CAACAG>CATTAG	p.352_353QQ>H*	ZCCHC8_uc001ucl.2_5'Flank|ZCCHC8_uc001ucm.2_Nonsense_Mutation_p.114_115QQ>H*|ZCCHC8_uc009zxp.2_Nonsense_Mutation_p.114_115QQ>H*|ZCCHC8_uc009zxq.2_Nonsense_Mutation_p.114_115QQ>H*	NM_017612	NP_060082	Q6NZY4	ZCHC8_HUMAN	zinc finger, CCHC domain containing 8	352_353						catalytic step 2 spliceosome	nucleic acid binding|protein binding|zinc ion binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.25e-05)|Epithelial(86;0.000113)|BRCA - Breast invasive adenocarcinoma(302;0.202)		CTTTTATTCTGTTGTATTTCTC	0.351													5	9					0	0	6.4e-05	0	0
GPR81	27198	broad.mit.edu	37	12	123214229	123214230	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:123214229_123214230GG>AA	uc001ucz.2	-	1	900_901	c.657_658CC>TT	c.(655-660)ACCCGG>ACTTGG	p.R220W	GPR81_uc001ucw.1_RNA	NM_032554	NP_115943	Q9BXC0	HCAR1_HUMAN	G protein-coupled receptor 81	220	Cytoplasmic (Potential).				response to estradiol stimulus	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.14e-05)|Epithelial(86;3.25e-05)|BRCA - Breast invasive adenocarcinoma(302;0.197)		ATGATGAACCGGGTCGCCTTCT	0.554													17	60					0	0	6.4e-05	0	0
OGFOD2	79676	broad.mit.edu	37	12	123463717	123463717	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:123463717C>T	uc001uea.1	+	7	898	c.877C>T	c.(877-879)CGG>TGG	p.R293W	OGFOD2_uc001uds.1_Missense_Mutation_p.R129W|OGFOD2_uc001udt.1_Missense_Mutation_p.R129W|OGFOD2_uc001udu.1_Missense_Mutation_p.R129W|OGFOD2_uc001udv.1_Missense_Mutation_p.R129W|OGFOD2_uc009zxs.1_Missense_Mutation_p.R129W|OGFOD2_uc001udw.1_Missense_Mutation_p.R129W|OGFOD2_uc001udx.1_Missense_Mutation_p.R129W|OGFOD2_uc001udy.1_Missense_Mutation_p.R129W|OGFOD2_uc001udz.1_Missense_Mutation_p.R233W|OGFOD2_uc001ueb.1_Missense_Mutation_p.R129W|ARL6IP4_uc001uec.2_5'Flank|ARL6IP4_uc001ued.2_5'Flank|ARL6IP4_uc001uee.2_5'Flank|ARL6IP4_uc001uef.2_5'Flank|ARL6IP4_uc001ueg.2_5'Flank|ARL6IP4_uc009zxt.2_5'Flank|ARL6IP4_uc001ueh.2_5'Flank|ARL6IP4_uc001uei.2_5'Flank	NM_024623	NP_078899	Q6N063	OGFD2_HUMAN	2-oxoglutarate and iron-dependent oxygenase	293	Fe2OG dioxygenase.						iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			pancreas(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.11e-05)|Epithelial(86;0.000127)|BRCA - Breast invasive adenocarcinoma(302;0.107)	Vitamin C(DB00126)	GCATGGAGCCCGGCCCTTGGG	0.682													21	32					0	0	0.00152264	0	0
DNAH10	196385	broad.mit.edu	37	12	124345695	124345695	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:124345695C>T	uc001uft.3	+	38	6557	c.6532C>T	c.(6532-6534)CCA>TCA	p.P2178S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2178	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AATCAACAAGCCAACAGACAA	0.463													10	21					0	0	0.000673444	0	0
TMEM132B	114795	broad.mit.edu	37	12	126068489	126068489	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:126068489C>T	uc001uhe.1	+	5	1379	c.1371C>T	c.(1369-1371)GTC>GTT	p.V457V		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	457	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GTTCTGTGGTCGATGTGTCTG	0.483													41	84					0	0	0.0025221	0	0
TMEM132B	114795	broad.mit.edu	37	12	126135239	126135239	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:126135239G>A	uc001uhe.1	+	7	1647	c.1639G>A	c.(1639-1641)GAA>AAA	p.E547K	TMEM132B_uc001uhf.1_Missense_Mutation_p.E59K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	547	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GCCTACCCGGGAAAGCGATGA	0.537													13	21					0	0	0.00244969	0	0
EP400	57634	broad.mit.edu	37	12	132445388	132445388	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:132445388C>T	uc001ujn.2	+	1	259	c.224C>T	c.(223-225)ACC>ATC	p.T75I	EP400_uc001ujl.2_Missense_Mutation_p.T75I|EP400_uc001ujm.2_Missense_Mutation_p.T75I|EP400_uc001ujj.1_Missense_Mutation_p.T75I|EP400_uc001ujk.2_Missense_Mutation_p.T75I	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	75					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GTGAACATCACCCTGCAGAGC	0.622													34	50					0	0	0.00148497	0	0
TPTE2	93492	broad.mit.edu	37	13	20048070	20048070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:20048070G>A	uc001umd.2	-	7	587	c.376C>T	c.(376-378)CGA>TGA	p.R126*	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Nonsense_Mutation_p.R89*|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	126	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ACAAATACTCGAAGAAGAACA	0.259													11	53					0	0	0.000673444	0	0
ATP8A2	51761	broad.mit.edu	37	13	26154085	26154085	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:26154085G>A	uc001uqk.2	+	22	2149	c.2007G>A	c.(2005-2007)AAG>AAA	p.K669K	ATP8A2_uc010tdi.1_Silent_p.K629K|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Silent_p.K179K	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	629	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		TCATTGAGAAGGTAACCGCAC	0.423													9	9					0	0	0.000978159	0	0
RASL11A	387496	broad.mit.edu	37	13	27847274	27847274	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:27847274C>T	uc001urd.1	+	4	990	c.372C>T	c.(370-372)ATC>ATT	p.I124I		NM_206827	NP_996563	Q6T310	RSLBA_HUMAN	RAS-like, family 11, member A	124	Small GTPase-like.				positive regulation of transcription from RNA polymerase I promoter|small GTPase mediated signal transduction|transcription, DNA-dependent	membrane|nucleolus	GTP binding|GTPase activity			breast(1)	1		Lung SC(185;0.0161)	Colorectal(13;0.00042)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.0173)|GBM - Glioblastoma multiforme(144;0.0557)|OV - Ovarian serous cystadenocarcinoma(117;0.152)|Epithelial(112;0.164)		ACTTGTCCATCCGACCCCTTT	0.572													8	46					0	0	0.000157383	0	0
STARD13	90627	broad.mit.edu	37	13	33704280	33704280	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:33704280C>T	uc001uuw.2	-	5	660	c.534G>A	c.(532-534)AGG>AGA	p.R178R	STARD13_uc001uuu.2_Silent_p.R170R|STARD13_uc001uuv.2_Silent_p.R60R|STARD13_uc001uux.2_Silent_p.R143R|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Silent_p.R163R	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	178					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		TGGTCGTGTTCCTCATCCCCG	0.607													9	19					0	0	0.000442599	0	0
NBEA	26960	broad.mit.edu	37	13	36026256	36026256	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:36026256A>C	uc001uvb.2	+	40	6538	c.6332A>C	c.(6331-6333)AAG>ACG	p.K2111T	NBEA_uc010abi.2_Missense_Mutation_p.K767T	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2111						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GTAAAGTCAAAGAAAACATTC	0.338													7	32					0	0	0.000274275	0	0
DCLK1	9201	broad.mit.edu	37	13	36700082	36700082	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:36700082C>T	uc001uvf.2	-	2	426	c.193G>A	c.(193-195)GGA>AGA	p.G65R		NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	65	Doublecortin 1.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		TATCGATCTCCGTTTCGATAG	0.557													11	54					0	0	0.000978159	0	0
CCNA1	8900	broad.mit.edu	37	13	37011908	37011908	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:37011908G>A	uc001uvr.3	+	3	790	c.440G>A	c.(439-441)AGA>AAA	p.R147K	CCNA1_uc010teo.1_Missense_Mutation_p.R103K|CCNA1_uc010abq.2_Missense_Mutation_p.R103K|CCNA1_uc010abp.2_Missense_Mutation_p.R103K|CCNA1_uc001uvs.3_Missense_Mutation_p.R146K|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	147					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		CAGGGGGACAGAGACAGCTGC	0.537													9	35					0	0	0.000274275	0	0
CCNA1	8900	broad.mit.edu	37	13	37014135	37014135	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:37014135C>T	uc001uvr.3	+	6	1263	c.913C>T	c.(913-915)CCT>TCT	p.P305S	CCNA1_uc010teo.1_Missense_Mutation_p.P261S|CCNA1_uc010abq.2_Missense_Mutation_p.P261S|CCNA1_uc010abp.2_Missense_Mutation_p.P261S|CCNA1_uc001uvs.3_Missense_Mutation_p.P304S|CCNA1_uc010abr.2_Intron	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	305					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		AGAGATATATCCTCCTGAAGT	0.403													5	23					0	0	0.00116845	0	0
CSNK1A1L	122011	broad.mit.edu	37	13	37679102	37679102	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:37679102C>T	uc001uwm.1	-	1	700	c.292G>A	c.(292-294)GAA>AAA	p.E98K		NM_145203	NP_660204	Q8N752	KC1AL_HUMAN	casein kinase 1, alpha 1-like	98	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)	1		Lung NSC(96;7.97e-05)|Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.109)		all cancers(112;3.58e-07)|Epithelial(112;1.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00695)|BRCA - Breast invasive adenocarcinoma(63;0.0117)|GBM - Glioblastoma multiforme(144;0.0407)		AAGAGGTCTTCGAGGCTGGGT	0.453													18	56					0	0	0.00121646	0	0
TRPC4	7223	broad.mit.edu	37	13	38320295	38320295	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:38320295C>T	uc001uws.2	-	3	911	c.676G>A	c.(676-678)GAA>AAA	p.E226K	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.E226K|TRPC4_uc010tey.1_Missense_Mutation_p.E226K|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Missense_Mutation_p.E226K|TRPC4_uc010aby.2_Missense_Mutation_p.E226K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	226	Potential.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TCCTGAAGTTCCCAACTTAAC	0.478													9	21					0	0	0.000274275	0	0
FREM2	341640	broad.mit.edu	37	13	39263937	39263937	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:39263937C>T	uc001uwv.2	+	1	2765	c.2456C>T	c.(2455-2457)ACC>ATC	p.T819I		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	819	CSPG 5.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GGTACCTTTACCCTTTACTTG	0.562													8	45					0	0	0.000157383	0	0
STOML3	161003	broad.mit.edu	37	13	39564817	39564817	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:39564817C>T	uc001uwx.2	-	1	180	c.42G>A	c.(40-42)GAG>GAA	p.E14E	STOML3_uc010tez.1_5'UTR	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	14						integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		CCACGAAATTCTCTTTATCTT	0.378													16	56					0	0	0.00074312	0	0
AKAP11	11215	broad.mit.edu	37	13	42882621	42882621	+	Missense_Mutation	SNP	G	C	C	rs142106058		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:42882621G>C	uc001uys.1	+	9	5324	c.5149G>C	c.(5149-5151)GAG>CAG	p.E1717Q		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1717	Ser-rich.				intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TCAGTCAACCGAGTCTGTCAG	0.368													3	82					0	0	0.00024832	0	0
CKAP2	26586	broad.mit.edu	37	13	53035666	53035666	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:53035666G>A	uc001vgv.2	+	4	905	c.708G>A	c.(706-708)ATG>ATA	p.M236I	CKAP2_uc001vgt.2_Missense_Mutation_p.M235I|CKAP2_uc001vgu.2_Missense_Mutation_p.M235I|CKAP2_uc010tha.1_Missense_Mutation_p.M187I	NM_001098525	NP_001091995	Q8WWK9	CKAP2_HUMAN	cytoskeleton associated protein 2 isoform 2	236					apoptosis|cell cycle	centrosome|microtubule|spindle pole				ovary(1)|skin(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00212)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.6e-08)		CCTCCAATATGACTGCCACTA	0.423													10	38					0	0	0.000978159	0	0
KLHL1	57626	broad.mit.edu	37	13	70275873	70275873	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:70275873C>T	uc001vip.2	-	11	3002	c.2208G>A	c.(2206-2208)GGG>GGA	p.G736G	KLHL1_uc010thm.1_Silent_p.G675G	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	736	Kelch 6.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CACCTGCTCTCCCAATATTCA	0.303													7	34					0	0	0.000274275	0	0
KLHL1	57626	broad.mit.edu	37	13	70681351	70681351	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:70681351C>T	uc001vip.2	-	1	1275	c.481G>A	c.(481-483)GAA>AAA	p.E161K	KLHL1_uc010thm.1_Missense_Mutation_p.E161K|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	161					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CCACATCCTTCACCTGTTGCC	0.532													15	91					0	0	0.00121646	0	0
DACH1	1602	broad.mit.edu	37	13	72053377	72053377	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:72053377C>T	uc010thn.1	-	9	2217	c.1794G>A	c.(1792-1794)CTG>CTA	p.L598L	DACH1_uc010tho.1_Silent_p.L450L|DACH1_uc010thp.1_Silent_p.L396L	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	650	DACHbox-C.|Potential.|Interaction with SIN3A (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AATCCATCTTCAGCTCAGTTT	0.388													22	56					0	0	0.00152264	0	0
SLC15A1	6564	broad.mit.edu	37	13	99362121	99362121	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:99362121G>A	uc001vno.2	-	12	1022	c.945C>T	c.(943-945)ATC>ATT	p.I315I		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	315	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TCAAACTTACGATTTTCCCGG	0.378													18	61					0	0	0.00229938	0	0
DOCK9	23348	broad.mit.edu	37	13	99537329	99537329	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:99537329G>A	uc001vnt.2	-	21	2336	c.2281C>T	c.(2281-2283)CCC>TCC	p.P761S	DOCK9_uc001vnw.2_Missense_Mutation_p.P760S|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.P761S|DOCK9_uc010tis.1_Missense_Mutation_p.P760S|DOCK9_uc010tit.1_Missense_Mutation_p.P761S|DOCK9_uc010afu.1_Missense_Mutation_p.P607S	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	761	DHR-1.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TTCAGGAGGGGAAGCCAGGAG	0.502													4	13					0	0	0.00116845	0	0
SLC10A2	6555	broad.mit.edu	37	13	103701670	103701670	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:103701670G>A	uc001vpy.3	-	5	1485	c.888C>T	c.(886-888)TTC>TTT	p.F296F		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	296	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					AGGCGAGCTGGAAAATGCTGT	0.443													10	46					0	0	0.00136819	0	0
C13orf28	122258	broad.mit.edu	37	13	113086823	113086824	+	Missense_Mutation	DNP	GG	AA	AA	rs150077672		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:113086823_113086824GG>AA	uc001vsd.1	+	6	542_543	c.511_512GG>AA	c.(511-513)GGA>AAA	p.G171K		NM_145248	NP_660291	Q96KW9	SPAC7_HUMAN	hypothetical protein LOC122258 precursor	171						extracellular region					0	all_lung(23;0.000633)|Lung NSC(43;0.0161)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0997)|Medulloblastoma(90;0.163)					TCAAAATATTGGAAGATCTTCA	0.391													15	47					0	0	6.4e-05	0	0
F7	2155	broad.mit.edu	37	13	113772738	113772738	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:113772738C>T	uc001vsv.2	+	9	868	c.817C>T	c.(817-819)CTC>TTC	p.L273F	F7_uc001vsw.2_Missense_Mutation_p.L251F|F7_uc010tjt.1_Missense_Mutation_p.L204F	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	273	Peptidase S1.				anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	CGAGCACGACCTCAGCGAGCA	0.662													16	58					0	0	0.000958276	0	0
CUL4A	8451	broad.mit.edu	37	13	113899533	113899533	+	Silent	SNP	C	T	T	rs141571594		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr13:113899533C>T	uc010tjy.1	+	15	1523	c.1512C>T	c.(1510-1512)ATC>ATT	p.I504I	CUL4A_uc010tjx.1_Silent_p.I404I|CUL4A_uc010agu.2_Silent_p.I365I|CUL4A_uc010tjz.1_Silent_p.I183I	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	504					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			CGAAGGACATCATGGTTCATT	0.398													8	39					0	0	0.000673444	0	0
OR4N2	390429	broad.mit.edu	37	14	20295759	20295759	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:20295759C>T	uc010tkv.1	+	1	152	c.152C>T	c.(151-153)TCA>TTA	p.S51L		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ACCATAAAGTCAGACCCTGGG	0.468													31	168					0	0	0.00058488	0	0
OR4K1	79544	broad.mit.edu	37	14	20404752	20404752	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:20404752G>A	uc001vwj.1	+	1	927	c.927G>A	c.(925-927)TGG>TGA	p.W309*		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TGAACTCCTGGAAAAACTAGG	0.438													7	38					0	0	0.000274275	0	0
OR4K14	122740	broad.mit.edu	37	14	20483307	20483307	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:20483307C>T	uc010tky.1	-	1	46	c.46G>A	c.(46-48)GGA>AGA	p.G16R		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GTGCAGAGTCCATGCAACACA	0.348													15	21					0	0	0.00074312	0	0
OR11H6	122748	broad.mit.edu	37	14	20692045	20692045	+	Silent	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:20692045G>T	uc010tlc.1	+	1	177	c.177G>T	c.(175-177)GGG>GGT	p.G59G		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	59	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		CACTGCTAGGGAATGGAGCTA	0.478													13	61					9.31168e-06	3.28948e-05	0.00185496	1	0
OR11H6	122748	broad.mit.edu	37	14	20692327	20692327	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:20692327C>T	uc010tlc.1	+	1	459	c.459C>T	c.(457-459)ATC>ATT	p.I153I		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	153	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		ACCCCTCCATCATGACTGGGA	0.433													16	44					0	0	0.000422831	0	0
CCNB1IP1	57820	broad.mit.edu	37	14	20779733	20779734	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:20779733_20779734CC>AA	uc001vwv.2	-	7	1458_1459	c.809_810GG>TT	c.(808-810)AGG>ATT	p.R270I	CCNB1IP1_uc001vww.2_Missense_Mutation_p.R270I|CCNB1IP1_uc001vwx.2_Missense_Mutation_p.R270I|CCNB1IP1_uc001vwy.2_Missense_Mutation_p.R270I|CCNB1IP1_uc001vwz.2_Missense_Mutation_p.R270I	NM_182851	NP_878271	Q9NPC3	CIP1_HUMAN	cyclin B1 interacting protein 1 isoform 3	270						chromosome|nucleus	ligase activity|metal ion binding|protein binding		HMGA2/CCNB1IP1(2)	soft_tissue(2)|ovary(1)	3	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;8.86e-07)|all cancers(55;4.98e-06)	GBM - Glioblastoma multiforme(265;0.0164)		CTTTGAAGGCCCTGCTAGAAAC	0.272			T	HMGA2	leiomyoma								10	232					0	0	6.4e-05	0	0
RNASE9	390443	broad.mit.edu	37	14	21024873	21024873	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:21024873C>T	uc010aho.2	-	4	515	c.356G>A	c.(355-357)AGA>AAA	p.R119K	RNASE9_uc001vxq.3_Missense_Mutation_p.R124K|RNASE9_uc010ahp.2_Missense_Mutation_p.R124K|RNASE9_uc010ahq.2_Missense_Mutation_p.R124K|RNASE9_uc010ahr.2_Missense_Mutation_p.R124K|RNASE9_uc010ahs.2_Missense_Mutation_p.R119K|RNASE9_uc010aht.2_Missense_Mutation_p.R119K|RNASE9_uc010ahu.2_Missense_Mutation_p.R119K	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	119						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		TGGCACAAATCTGTTGTAACA	0.368													11	33					0	0	0.000673444	0	0
EDDM3B	64184	broad.mit.edu	37	14	21238578	21238578	+	Missense_Mutation	SNP	G	A	A	rs28731276	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:21238578G>A	uc001vyd.2	+	2	367	c.269G>A	c.(268-270)CGA>CAA	p.R90Q		NM_022360	NP_071755	P56851	EP3B_HUMAN	human epididymis-specific 3 beta precursor	90					spermatid development	extracellular region				ovary(1)	1						GATCGCTTCCGAAATGCATAT	0.408													5	30					0	0	0.000602214	0	0
NDRG2	57447	broad.mit.edu	37	14	21487861	21487861	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:21487861C>T	uc001vyy.2	-	11	803	c.653G>A	c.(652-654)AGA>AAA	p.R218K	NDRG2_uc010tll.1_Missense_Mutation_p.R214K|NDRG2_uc001vyt.2_Missense_Mutation_p.R131K|NDRG2_uc001vyu.2_Missense_Mutation_p.R175K|NDRG2_uc001vyv.2_Missense_Mutation_p.R204K|NDRG2_uc001vyw.2_Missense_Mutation_p.R204K|NDRG2_uc001vzb.2_Missense_Mutation_p.R158K|NDRG2_uc001vyx.2_Missense_Mutation_p.R218K|NDRG2_uc001vza.2_Missense_Mutation_p.R204K|NDRG2_uc001vyz.2_Missense_Mutation_p.R204K|NDRG2_uc001vzc.2_Missense_Mutation_p.R204K|NDRG2_uc001vze.2_Missense_Mutation_p.R218K|NDRG2_uc001vzd.2_Missense_Mutation_p.R218K|NDRG2_uc001vzg.2_Missense_Mutation_p.R204K|NDRG2_uc001vzf.2_Missense_Mutation_p.R204K|NDRG2_uc010aig.2_Missense_Mutation_p.R218K	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	218					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		AATGATATTTCTGTACTTTTG	0.403													6	31					0	0	0.00198382	0	0
NDRG2	57447	broad.mit.edu	37	14	21488731	21488731	+	Missense_Mutation	SNP	G	A	A	rs144285486	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:21488731G>A	uc001vyy.2	-	9	629	c.479C>T	c.(478-480)CCG>CTG	p.P160L	NDRG2_uc010tll.1_Missense_Mutation_p.P156L|NDRG2_uc001vyt.2_Missense_Mutation_p.P73L|NDRG2_uc001vyu.2_Intron|NDRG2_uc001vyv.2_Missense_Mutation_p.P146L|NDRG2_uc001vyw.2_Missense_Mutation_p.P146L|NDRG2_uc001vzb.2_Missense_Mutation_p.P100L|NDRG2_uc001vyx.2_Missense_Mutation_p.P160L|NDRG2_uc001vza.2_Missense_Mutation_p.P146L|NDRG2_uc001vyz.2_Missense_Mutation_p.P146L|NDRG2_uc001vzc.2_Missense_Mutation_p.P146L|NDRG2_uc001vze.2_Missense_Mutation_p.P160L|NDRG2_uc001vzd.2_Missense_Mutation_p.P160L|NDRG2_uc001vzg.2_Missense_Mutation_p.P146L|NDRG2_uc001vzf.2_Missense_Mutation_p.P146L|NDRG2_uc010aig.2_Missense_Mutation_p.P160L	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	160					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		AACAGTGTCCGGGTGGTTAAG	0.562													5	22					0	0	0.00198382	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21795907	21795907	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:21795907G>A	uc001wag.2	+	17	2836	c.2836G>A	c.(2836-2838)GAT>AAT	p.D946N	RPGRIP1_uc001wah.2_Missense_Mutation_p.D588N|RPGRIP1_uc001wai.2_Missense_Mutation_p.D272N|RPGRIP1_uc001wak.2_Missense_Mutation_p.D421N|RPGRIP1_uc010aim.2_Missense_Mutation_p.D329N|RPGRIP1_uc001wal.2_Missense_Mutation_p.D305N|RPGRIP1_uc001wam.2_Missense_Mutation_p.D263N	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	946					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		TAAGGGGAAGGATACCAAGGA	0.473													9	23					0	0	0.000274275	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21798546	21798546	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:21798546G>A	uc001wag.2	+	19	3238	c.3238G>A	c.(3238-3240)GAC>AAC	p.D1080N	RPGRIP1_uc001wah.2_Missense_Mutation_p.D722N|RPGRIP1_uc001wai.2_Missense_Mutation_p.D406N|RPGRIP1_uc001wak.2_Missense_Mutation_p.D555N|RPGRIP1_uc010aim.2_Missense_Mutation_p.D463N|RPGRIP1_uc001wal.2_Missense_Mutation_p.D439N|RPGRIP1_uc001wam.2_Missense_Mutation_p.D397N	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	1080	Interaction with RPGR.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		TCCTGTAAATGGTATTGTCTT	0.229													7	26					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	14	22090574	22090574	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:22090574C>T	uc001wbi.2	+	2	226	c.213C>T	c.(211-213)CCC>CCT	p.P71P						SubName: Full=Putative uncharacterized protein ENSP00000374929;																		GCGGAGCACCCACATTTCTTT	0.478													14	108					0	0	0.000422831	0	0
Unknown	0	broad.mit.edu	37	14	22111697	22111697	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:22111697G>A	uc001wbk.3	+	2	301	c.268G>A	c.(268-270)GAG>AAG	p.E90K						SubName: Full=Putative uncharacterized protein ENSP00000374930;																		TGGTTTGGAGGAGAAAGGTCG	0.483													26	191					0	0	0.00209593	0	0
Unknown	0	broad.mit.edu	37	14	22111789	22111789	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:22111789C>T	uc001wbk.3	+	2	393	c.360C>T	c.(358-360)TAC>TAT	p.Y120Y						SubName: Full=Putative uncharacterized protein ENSP00000374930;																		CTGCCTCTTACCTCTGTGCTG	0.463													12	41					0	0	0.00185496	0	0
SLC7A7	9056	broad.mit.edu	37	14	23243150	23243150	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:23243150C>T	uc001wgr.3	-	9	1559	c.1421G>A	c.(1420-1422)AGG>AAG	p.R474K	SLC7A7_uc001wgs.3_Missense_Mutation_p.R474K|SLC7A7_uc001wgt.3_Missense_Mutation_p.R474K|SLC7A7_uc001wgu.3_Missense_Mutation_p.R474K|SLC7A7_uc001wgv.3_Missense_Mutation_p.R474K	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	474					blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		ACCCACGATCCTTCGGAGGTA	0.498													15	45					0	0	0.000566183	0	0
ACIN1	22985	broad.mit.edu	37	14	23549555	23549555	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:23549555G>A	uc001wit.3	-	6	1491	c.1163C>T	c.(1162-1164)TCC>TTC	p.S388F	ACIN1_uc001wis.3_Missense_Mutation_p.S70F|ACIN1_uc010akg.2_Missense_Mutation_p.S388F|ACIN1_uc010tnj.1_Missense_Mutation_p.S348F	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	388	Glu-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		TCGAGGAGGGGAAGGAGACTT	0.473													10	41					0	0	0.000978159	0	0
CMTM5	116173	broad.mit.edu	37	14	23848245	23848245	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:23848245C>T	uc010akm.2	+	4	930	c.486C>T	c.(484-486)TTC>TTT	p.F162F	CMTM5_uc001wjs.2_Silent_p.F95F|CMTM5_uc001wjt.2_Intron|CMTM5_uc010akn.2_Silent_p.F57F|CMTM5_uc001wju.2_Silent_p.F44F|CMTM5_uc010ako.2_Intron	NM_138460	NP_612469	Q96DZ9	CKLF5_HUMAN	chemokine-like factor superfamily 5 isoform a	162	Helical; (Potential).|MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.0064)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0382)		CCCAGGACTTCCTGCGCTGTG	0.607													5	25					0	0	0.000602214	0	0
MYH6	4624	broad.mit.edu	37	14	23857379	23857379	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:23857379C>T	uc001wjv.2	-	30	4411	c.4344G>A	c.(4342-4344)CAG>CAA	p.Q1448Q		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1448	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CAAAGTTTCTCTGCTTCTTGT	0.587													27	131					0	0	0.000878237	0	0
MYH7	4625	broad.mit.edu	37	14	23886362	23886362	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:23886362C>T	uc001wjx.2	-	32	4625	c.4519G>A	c.(4519-4521)GAG>AAG	p.E1507K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1507	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCCAGCACACCCTGCAGGTTT	0.602													29	142					0	0	0.000814825	0	0
MYH7	4625	broad.mit.edu	37	14	23886368	23886368	+	Silent	SNP	G	A	A	rs139928934		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:23886368G>A	uc001wjx.2	-	32	4619	c.4513C>T	c.(4513-4515)CTG>TTG	p.L1505L		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1505	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		ACACCCTGCAGGTTTTTGTTC	0.592													36	143					0	0	0.00170553	0	0
MYH7	4625	broad.mit.edu	37	14	23886895	23886895	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:23886895C>T	uc001wjx.2	-	31	4276	c.4170G>A	c.(4168-4170)AAG>AAA	p.K1390K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1390	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCAGCTTCTTCCTGCCCAGGG	0.582													6	19					0	0	0.00116845	0	0
MYH7	4625	broad.mit.edu	37	14	23898500	23898500	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:23898500G>A	uc001wjx.2	-	13	1301	c.1195C>T	c.(1195-1197)CTG>TTG	p.L399L		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	399	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GGGTGGCACAGCCCCTTGAGC	0.547													13	60					0	0	0.000308642	0	0
DCAF11	80344	broad.mit.edu	37	14	24587638	24587638	+	Missense_Mutation	SNP	C	T	T	rs151306695	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:24587638C>T	uc001wlv.2	+	7	899	c.619C>T	c.(619-621)CGT>TGT	p.R207C	DCAF11_uc001wlw.2_Missense_Mutation_p.R207C|DCAF11_uc001wlz.2_Missense_Mutation_p.R107C|DCAF11_uc001wly.2_Missense_Mutation_p.R163C|DCAF11_uc001wme.2_Missense_Mutation_p.R167C|DCAF11_uc010tny.1_Missense_Mutation_p.R74C|DCAF11_uc001wmd.2_Missense_Mutation_p.R207C|DCAF11_uc001wmc.2_Missense_Mutation_p.R107C|DCAF11_uc001wmb.3_Missense_Mutation_p.R181C|DCAF11_uc001wma.3_Missense_Mutation_p.R207C	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	207	WD 1.					CUL4 RING ubiquitin ligase complex	protein binding				0						TGGCCGTTTCCGTAAATTCAA	0.488													24	149					0	0	0.000720815	0	0
GMPR2	51292	broad.mit.edu	37	14	24707806	24707806	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:24707806G>A	uc001wnr.2	+	10	1251	c.869G>A	c.(868-870)GGA>GAA	p.G290E	GMPR2_uc001wnv.2_Missense_Mutation_p.G127E|GMPR2_uc001wns.2_Missense_Mutation_p.G290E|GMPR2_uc001wnt.2_Missense_Mutation_p.G257E|GMPR2_uc001wnu.2_Missense_Mutation_p.G315E|GMPR2_uc001wnw.2_Missense_Mutation_p.G290E|GMPR2_uc010all.2_Missense_Mutation_p.G262E|GMPR2_uc001wnx.2_Missense_Mutation_p.G308E|GMPR2_uc010tod.1_Missense_Mutation_p.G257E|GMPR2_uc010alk.1_Missense_Mutation_p.G351E|GMPR2_uc010toe.1_Missense_Mutation_p.G351E	NM_001002001	NP_001002001	Q9P2T1	GMPR2_HUMAN	guanosine monophosphate reductase 2 isoform 2	290					nucleotide metabolic process|purine base metabolic process|purine-containing compound salvage	cytosol	GMP reductase activity|metal ion binding			ovary(3)	3				GBM - Glioblastoma multiforme(265;0.0181)		GCCTCAGAGGGAAAGACAGTG	0.473													15	50					0	0	0.000566183	0	0
TGM1	7051	broad.mit.edu	37	14	24728335	24728336	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:24728335_24728336CC>TT	uc001wod.2	-	7	1228_1229	c.1104_1105GG>AA	c.(1102-1107)ACGGGA>ACAAGA	p.G369R	TGM1_uc010tog.1_Intron	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	369					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	ACGGAATATCCCGTGCGTAGGT	0.609													5	18					0	0	6.4e-05	0	0
NFATC4	4776	broad.mit.edu	37	14	24839582	24839582	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:24839582C>T	uc001wpc.2	+	2	1299	c.978C>T	c.(976-978)ATC>ATT	p.I326I	NFATC4_uc010tok.1_Silent_p.I389I|NFATC4_uc010tol.1_Silent_p.I389I|NFATC4_uc010alr.2_Silent_p.I389I|NFATC4_uc010als.2_Silent_p.I339I|NFATC4_uc010tom.1_Silent_p.I339I|NFATC4_uc010ton.1_Silent_p.I339I|NFATC4_uc010too.1_Silent_p.I339I|NFATC4_uc010alt.2_Silent_p.I358I|NFATC4_uc010top.1_Silent_p.I358I|NFATC4_uc010toq.1_Silent_p.I358I|NFATC4_uc010alu.2_Intron|NFATC4_uc010tor.1_Silent_p.I326I|NFATC4_uc010tos.1_Silent_p.I256I|NFATC4_uc010tot.1_Silent_p.I314I|NFATC4_uc010tou.1_Silent_p.I256I|NFATC4_uc010tov.1_Silent_p.I314I|NFATC4_uc010tow.1_Silent_p.I256I|NFATC4_uc010alv.2_Silent_p.I314I|NFATC4_uc010tox.1_Silent_p.I256I|NFATC4_uc001wpd.2_5'Flank|NFATC4_uc010toy.1_5'Flank|NFATC4_uc010toz.1_5'Flank	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	326	Pro-rich.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CTGAGAGCATCCCTCAGAAGA	0.662													7	49					0	0	0.000157383	0	0
HECTD1	25831	broad.mit.edu	37	14	31598187	31598187	+	Silent	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:31598187A>G	uc001wrc.1	-	25	4879	c.4390T>C	c.(4390-4392)TTA>CTA	p.L1464L	HECTD1_uc001wrb.1_5'UTR|HECTD1_uc001wrd.1_Silent_p.L932L	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1464	Ser-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		TCAGGGCCTAACTTCCTTTCA	0.453													18	66					0	0	0.000958276	0	0
NPAS3	64067	broad.mit.edu	37	14	34145419	34145419	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:34145419G>A	uc001wru.2	+	6	625	c.561G>A	c.(559-561)GTG>GTA	p.V187V	NPAS3_uc001wrs.2_Silent_p.V174V|NPAS3_uc001wrt.2_Silent_p.V155V|NPAS3_uc001wrv.2_Silent_p.V157V|NPAS3_uc001wrw.2_Silent_p.V85V	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	187	PAS 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		CCCTCTAGGTGGAGCTGACAG	0.512													10	50					0	0	0.000442599	0	0
KIAA0391	9692	broad.mit.edu	37	14	35736016	35736016	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:35736016C>T	uc001wsy.1	+	6	1719	c.1359C>T	c.(1357-1359)TCC>TCT	p.S453S	KIAA0391_uc010tps.1_Silent_p.S358S|KIAA0391_uc001wsz.1_Silent_p.S437S|KIAA0391_uc001wta.2_RNA|KIAA0391_uc001wtb.1_Silent_p.S437S|KIAA0391_uc001wtc.1_Silent_p.S81S	NM_014672	NP_055487	O15091	MRRP3_HUMAN	mitochondrial RNase P protein 3 precursor	453				S -> F (in Ref. 3; BAG64540).	tRNA processing	mitochondrion					0	Breast(36;0.0545)|Hepatocellular(127;0.158)|Prostate(35;0.184)		Lung(238;2.93e-05)|LUAD - Lung adenocarcinoma(48;3.86e-05)|Epithelial(34;0.0114)|all cancers(34;0.0277)	GBM - Glioblastoma multiforme(112;0.0593)		GACGGAGTTCCCAGTGGAGTC	0.473													21	99					0	0	0.00278032	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36190931	36190931	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:36190931G>A	uc001wti.2	-	16	2620	c.2229C>T	c.(2227-2229)ACC>ACT	p.T743T	RALGAPA1_uc001wtj.2_Silent_p.T743T|RALGAPA1_uc010tpv.1_Silent_p.T743T|RALGAPA1_uc010tpw.1_Silent_p.T743T|RALGAPA1_uc001wtk.1_Silent_p.T594T	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	743					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TCGCCTTTTCGGTTCCTGGAG	0.453													18	70					0	0	0.00229938	0	0
SSTR1	6751	broad.mit.edu	37	14	38679263	38679263	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:38679263C>T	uc001wul.1	+	3	1286	c.669C>T	c.(667-669)TTC>TTT	p.F223F	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	223	Helical; Name=5; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	TGGTGGGCTTCGTGTTGTACA	0.607													7	53					0	0	0.000274275	0	0
SSTR1	6751	broad.mit.edu	37	14	38679758	38679758	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:38679758C>T	uc001wul.1	+	3	1781	c.1164C>T	c.(1162-1164)ATC>ATT	p.I388I	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	388	Cytoplasmic (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	CGTCCCGGATCACGACGCTCT	0.667													5	26					0	0	0.00116845	0	0
CTAGE5	4253	broad.mit.edu	37	14	39815129	39815129	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:39815129C>T	uc001wvg.3	+	21	2189	c.1853C>T	c.(1852-1854)GCC>GTC	p.A618V	CTAGE5_uc010tqe.1_Missense_Mutation_p.A580V|CTAGE5_uc001wuz.3_Missense_Mutation_p.A606V|CTAGE5_uc001wuy.3_Missense_Mutation_p.A538V|CTAGE5_uc001wvb.3_Missense_Mutation_p.A546V|CTAGE5_uc001wvc.3_Missense_Mutation_p.A520V|CTAGE5_uc001wva.3_Missense_Mutation_p.A589V|CTAGE5_uc001wvh.3_Missense_Mutation_p.A575V|CTAGE5_uc001wvf.3_Missense_Mutation_p.A543V|CTAGE5_uc001wvi.3_Missense_Mutation_p.A623V|CTAGE5_uc010amz.2_Missense_Mutation_p.A234V|CTAGE5_uc001wvj.3_Missense_Mutation_p.A589V	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	618	Pro-rich.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		CCTGATTCAGCCCTTCCTCCA	0.323													9	44					0	0	0.000274275	0	0
FAM179B	23116	broad.mit.edu	37	14	45513937	45513937	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:45513937A>G	uc001wvv.2	+	13	4227	c.4018A>G	c.(4018-4020)ACA>GCA	p.T1340A	FAM179B_uc001wvw.2_Missense_Mutation_p.T1340A|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1340							binding			skin(2)|upper_aerodigestive_tract(1)	3						GCTAGATACCACAGTAAAAGT	0.368													10	56					0	0	0.00185496	0	0
SLC35F4	341880	broad.mit.edu	37	14	58030893	58030893	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:58030893C>T	uc001xdb.1	-	8	1526	c.1526G>A	c.(1525-1527)AGA>AAA	p.R509K	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Missense_Mutation_p.R350K	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						GGCTCTGCCTCTGCCCCGCAG	0.453													4	18					0	0	0.000602214	0	0
GPR135	64582	broad.mit.edu	37	14	59930726	59930726	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:59930726G>A	uc010apj.2	-	1	1334	c.1219C>T	c.(1219-1221)CGG>TGG	p.R407W	GPR135_uc001xed.2_RNA	NM_022571	NP_072093	Q8IZ08	GP135_HUMAN	G protein-coupled receptor 135	407	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.134)		TTCCTAGTCCGGTAGCCCTCC	0.637													10	34					0	0	0.000673444	0	0
SYT16	83851	broad.mit.edu	37	14	62567375	62567375	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:62567375G>A	uc001xfu.1	+	6	2085	c.1888G>A	c.(1888-1890)GAA>AAA	p.E630K	SYT16_uc010tse.1_Missense_Mutation_p.E188K	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	630										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GGAGATGAAGGAAACCAAAGG	0.502													5	26					0	0	0.000602214	0	0
KCNH5	27133	broad.mit.edu	37	14	63175164	63175164	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:63175164G>A	uc001xfx.2	-	11	2080	c.2029C>T	c.(2029-2031)CGT>TGT	p.R677C	KCNH5_uc001xfy.2_Missense_Mutation_p.S611L	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	677	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CTGATCTTACGAAAGATGATC	0.458													9	61					0	0	0.000442599	0	0
KCNH5	27133	broad.mit.edu	37	14	63447677	63447677	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:63447677C>T	uc001xfx.2	-	6	906	c.855G>A	c.(853-855)AGG>AGA	p.R285R	KCNH5_uc001xfy.2_Silent_p.R285R|KCNH5_uc001xfz.1_Silent_p.R227R|KCNH5_uc001xga.2_Silent_p.R227R	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	285	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GATAGTTCATCCTTATGAGCT	0.413													6	45					0	0	0.00116845	0	0
SYNE2	23224	broad.mit.edu	37	14	64537419	64537419	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:64537419C>T	uc001xgm.2	+	52	10718	c.10488C>T	c.(10486-10488)TCC>TCT	p.S3496S	SYNE2_uc001xgl.2_Silent_p.S3496S|SYNE2_uc010apw.1_Silent_p.S202S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	3496	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CTGAAATTTCCAAAACAAAAG	0.368													5	35					0	0	0.00116845	0	0
ESR2	2100	broad.mit.edu	37	14	64735585	64735585	+	Missense_Mutation	SNP	C	T	T	rs145278854		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:64735585C>T	uc001xha.1	-	4	1048	c.580G>A	c.(580-582)GAT>AAT	p.D194N	ESR2_uc001xgu.2_Missense_Mutation_p.D194N|ESR2_uc001xgv.2_Missense_Mutation_p.D194N|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Missense_Mutation_p.D194N|ESR2_uc001xgy.1_Missense_Mutation_p.D194N|ESR2_uc001xgz.1_Missense_Mutation_p.D194N|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Missense_Mutation_p.D194N	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	194	NR C4-type.|Nuclear receptor.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	CGGTTTTTATCGATTGTACAC	0.423													26	98					0	0	0.00106085	0	0
HSPA2	3306	broad.mit.edu	37	14	65008167	65008167	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:65008167C>T	uc001xhj.2	+	2	676	c.600C>T	c.(598-600)ATC>ATT	p.I200I	HSPA2_uc001xhk.3_Silent_p.I200I	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	200					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		ACGTGCTCATCTTTGACCTGG	0.647													37	139					0	0	0.00195071	0	0
C14orf50	145376	broad.mit.edu	37	14	65055931	65055931	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:65055931C>T	uc001xhl.1	+	12	1240	c.1144C>T	c.(1144-1146)CCA>TCA	p.P382S	C14orf50_uc001xhm.1_Missense_Mutation_p.P112S	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	382										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		CCCCCTTGATCCAGAAGAAAA	0.433													7	46					0	0	0.000157383	0	0
SPTB	6710	broad.mit.edu	37	14	65240078	65240078	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:65240078C>T	uc001xht.2	-	24	5092	c.5038G>A	c.(5038-5040)GAA>AAA	p.E1680K	SPTB_uc001xhr.2_Missense_Mutation_p.E1680K|SPTB_uc001xhs.2_Missense_Mutation_p.E1680K|SPTB_uc001xhu.2_Missense_Mutation_p.E1680K|SPTB_uc010aqi.2_Missense_Mutation_p.E341K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1680	Spectrin 14.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TTGCGCTCTTCCGCCACGTCC	0.557													23	106					0	0	0.000878237	0	0
SPTB	6710	broad.mit.edu	37	14	65263392	65263392	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:65263392C>T	uc001xht.2	-	10	1278	c.1224G>A	c.(1222-1224)CTG>CTA	p.L408L	SPTB_uc001xhr.2_Silent_p.L408L|SPTB_uc001xhs.2_Silent_p.L408L|SPTB_uc001xhu.2_Silent_p.L408L	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	408	Spectrin 2.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TTCTCAGGGCCAGCTCCCGCC	0.572													8	44					0	0	0.000157383	0	0
GALNTL1	57452	broad.mit.edu	37	14	69787435	69787435	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:69787435G>A	uc010aqu.1	+	2	278	c.185G>A	c.(184-186)GGA>GAA	p.G62E	GALNTL1_uc001xla.1_Missense_Mutation_p.G62E|GALNTL1_uc001xlb.1_Missense_Mutation_p.G62E	NM_020692	NP_065743	Q8N428	GLTL1_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	62	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(1)|central_nervous_system(1)	2				all cancers(60;0.00793)|BRCA - Breast invasive adenocarcinoma(234;0.0174)|OV - Ovarian serous cystadenocarcinoma(108;0.0656)		CAGGTGACAGGAACTCCCTCG	0.607													13	96					0	0	0.00074312	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713226	70713226	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:70713226C>T	uc010ttg.1	-	1	1293	c.642G>A	c.(640-642)ATG>ATA	p.M214I		NR_003951				SubName: Full=ADAM21-like protein;												0						AGGTGGTCTTCATAAAATCAG	0.413													10	65					0	0	0.000442599	0	0
PAPLN	89932	broad.mit.edu	37	14	73720562	73720562	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:73720562G>A	uc010ttx.1	+	11	1358	c.1195G>A	c.(1195-1197)GAG>AAG	p.E399K	PAPLN_uc001xnw.3_Missense_Mutation_p.E372K|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.E399K	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	399	TSP type-1 3.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CGGCATCCAGGAGGCCGTGGA	0.692													13	45					0	0	0.00244969	0	0
NUMB	8650	broad.mit.edu	37	14	73753887	73753887	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:73753887G>C	uc001xny.1	-	9	906	c.586C>G	c.(586-588)CGT>GGT	p.R196G	NUMB_uc010aro.1_Missense_Mutation_p.R196G|NUMB_uc010arp.1_Missense_Mutation_p.R185G|NUMB_uc010arq.1_Missense_Mutation_p.R196G|NUMB_uc010arr.1_Missense_Mutation_p.R185G|NUMB_uc001xoa.1_Missense_Mutation_p.R196G|NUMB_uc001xnz.1_Missense_Mutation_p.R185G|NUMB_uc001xob.1_Missense_Mutation_p.R185G|NUMB_uc001xod.1_Missense_Mutation_p.R196G|NUMB_uc001xoc.1_Missense_Mutation_p.R196G|NUMB_uc010ars.1_Missense_Mutation_p.R185G|NUMB_uc001xof.1_Missense_Mutation_p.R160G|NUMB_uc001xog.2_Missense_Mutation_p.R185G|NUMB_uc001xoh.1_Missense_Mutation_p.R185G|NUMB_uc010ttz.1_5'Flank	NM_001005743	NP_001005743	P49757	NUMB_HUMAN	numb homolog isoform 1	196					axon guidance|lateral ventricle development|neuroblast division in subventricular zone|positive regulation of neurogenesis	integral to plasma membrane				ovary(2)|central_nervous_system(1)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00471)|OV - Ovarian serous cystadenocarcinoma(108;0.161)		GTTGTGACACGGAATGATCCT	0.448													13	86					0	0	0.000422831	0	0
PNMA1	9240	broad.mit.edu	37	14	74179852	74179852	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:74179852A>T	uc001xor.1	-	1	1277	c.491T>A	c.(490-492)TTC>TAC	p.F164Y		NM_006029	NP_006020	Q8ND90	PNMA1_HUMAN	paraneoplastic antigen MA1	164					apoptosis|central nervous system development|inflammatory response to antigenic stimulus|spermatogenesis	cytoplasm|focal adhesion|nucleolus	protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00331)|KIRC - Kidney renal clear cell carcinoma(182;0.0797)		cctccccgagaaaagtgtcag	0													12	76					0	0	0.00185496	0	0
ALDH6A1	4329	broad.mit.edu	37	14	74531559	74531559	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:74531559G>A	uc001xpo.2	-	11	1568	c.1469C>T	c.(1468-1470)TCC>TTC	p.S490F	C14orf45_uc010tup.1_3'UTR|C14orf45_uc001xpm.1_Intron|ALDH6A1_uc010asa.2_Missense_Mutation_p.S335F|ALDH6A1_uc010tuq.1_Missense_Mutation_p.S477F	NM_005589	NP_005580	Q02252	MMSA_HUMAN	aldehyde dehydrogenase 6A1 precursor	490						mitochondrial matrix|nucleus	fatty-acyl-CoA binding|malonate-semialdehyde dehydrogenase (acetylating) activity|methylmalonate-semialdehyde dehydrogenase (acylating) activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00354)	NADH(DB00157)	TCCCCTGAAGGAGGATCGAGA	0.403													5	30					0	0	0.000602214	0	0
KIAA0317	9870	broad.mit.edu	37	14	75151229	75151229	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:75151229G>A	uc001xqb.2	-	4	676	c.171C>T	c.(169-171)CCC>CCT	p.P57P	KIAA0317_uc010tut.1_Intron|KIAA0317_uc001xqc.2_Silent_p.P57P|KIAA0317_uc001xqd.1_Intron	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	57	Filamin.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		TGCAAGACCGGGGATCCAGGT	0.567													7	20					0	0	0.000274275	0	0
ALKBH1	8846	broad.mit.edu	37	14	78142163	78142163	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:78142163G>A	uc001xuc.1	-	5	585	c.576C>T	c.(574-576)TTC>TTT	p.F192F	ALKBH1_uc001xud.1_RNA	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	192					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		GGTCAGAAGGGAAAGGTGTGT	0.418													8	43					0	0	0.000274275	0	0
ALKBH1	8846	broad.mit.edu	37	14	78170752	78170753	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:78170752_78170753GG>AA	uc001xuc.1	-	2	260_261	c.251_252CC>TT	c.(250-252)CCC>CTT	p.P84L	ALKBH1_uc001xud.1_RNA	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	84					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		ACTTGCTGACGGGCTGAAGACC	0.441													21	124					0	0	6.4e-05	0	0
NRXN3	9369	broad.mit.edu	37	14	78709967	78709967	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:78709967G>A	uc001xum.1	+	2		c.1324G>A						Q9Y4C0	NRX3A_HUMAN	Homo sapiens mRNA for KIAA0743 protein, partial cds.						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GGTTAATTCTGGATCTCAAGT	0.567													7	43					0	0	0.000274275	0	0
NRXN3	9369	broad.mit.edu	37	14	78710067	78710067	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:78710067G>A	uc001xum.1	+	2		c.1424G>A						Q9Y4C0	NRX3A_HUMAN	Homo sapiens mRNA for KIAA0743 protein, partial cds.						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TGAAAATGGTGGGATCTGCTT	0.587													18	54					0	0	0.00047179	0	0
TSHR	7253	broad.mit.edu	37	14	81606187	81606187	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:81606187T>A	uc001xvd.1	+	9	1013	c.857T>A	c.(856-858)TTT>TAT	p.F286Y		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	286	Extracellular (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	TGCTGTGCTTTTAAGAATCAG	0.453			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						8	35					0	0	0.000442599	0	0
KCNK10	54207	broad.mit.edu	37	14	88729771	88729771	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:88729771C>T	uc001xwo.2	-	2	619	c.162G>A	c.(160-162)AGG>AGA	p.R54R	KCNK10_uc001xwm.2_Silent_p.R59R|KCNK10_uc001xwn.2_Silent_p.R59R	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	54	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						TGCCTTCCATCCTGGCTACCA	0.622													27	87					0	0	0.00178596	0	0
GPR68	8111	broad.mit.edu	37	14	91700924	91700924	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:91700924C>T	uc001xzg.2	-	2	812	c.471G>A	c.(469-471)CTG>CTA	p.L157L	GPR68_uc001xzh.2_Silent_p.L167L	NM_003485	NP_003476	Q15743	OGR1_HUMAN	G protein-coupled receptor 68	157	Helical; Name=4; (Potential).				inflammatory response	integral to plasma membrane	G-protein coupled receptor activity			kidney(1)	1		all_cancers(154;0.0555)		COAD - Colon adenocarcinoma(157;0.21)		CCTCGTGCATCAGGAAGTAGA	0.622													11	29					0	0	0.000978159	0	0
CATSPERB	79820	broad.mit.edu	37	14	92136225	92136225	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:92136225G>A	uc001xzs.1	-	14	1360	c.1220C>T	c.(1219-1221)TCA>TTA	p.S407L	CATSPERB_uc010aub.1_5'UTR	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	407					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AGAAGAGAATGATGAAGGAAA	0.413													17	32					0	0	0.000422831	0	0
CATSPERB	79820	broad.mit.edu	37	14	92157875	92157875	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:92157875A>T	uc001xzs.1	-	10	996	c.856T>A	c.(856-858)TTT>ATT	p.F286I		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	286					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				ACCCTTTCAAAACCACAAAAG	0.328													45	167					0	0	0.000781405	0	0
TC2N	123036	broad.mit.edu	37	14	92251687	92251687	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:92251687C>T	uc001xzu.3	-	11	1372	c.1181G>A	c.(1180-1182)GGA>GAA	p.G394E	TC2N_uc001xzt.3_Missense_Mutation_p.G394E|TC2N_uc010auc.2_Missense_Mutation_p.G330E|TC2N_uc001xzv.3_Missense_Mutation_p.G394E	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	394	C2.					nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		GCTAAACATTCCCACCTTCAC	0.338													38	137					0	0	0.000953801	0	0
GOLGA5	9950	broad.mit.edu	37	14	93301978	93301978	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:93301978C>T	uc001yaz.1	+	11	2202	c.2020C>T	c.(2020-2022)CGC>TGC	p.R674C	GOLGA5_uc001yba.1_Missense_Mutation_p.R71C	NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	674	Cytoplasmic (Potential).				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		CGGAAAAGTTCGCAAAGCTGC	0.383			T	RET	papillary thyroid								7	25					0	0	0.00198382	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756286	94756286	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:94756286C>T	uc001yct.2	-	2	1111	c.645G>A	c.(643-645)GGG>GGA	p.G215G	SERPINA10_uc001ycu.3_Silent_p.G215G	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	215					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		TGGGAATTTTCCCCCGAGTCT	0.388													9	59					0	0	0.000442599	0	0
SERPINA4	5267	broad.mit.edu	37	14	95033525	95033525	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:95033525G>A	uc001ydk.2	+	3	934	c.868G>A	c.(868-870)GAA>AAA	p.E290K	SERPINA4_uc010avd.2_Missense_Mutation_p.E327K|SERPINA4_uc001ydl.2_Missense_Mutation_p.E290K	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	290					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		GAGGGAGATTGAAGAGGTTCT	0.468													7	38					0	0	0.000274275	0	0
SERPINA5	5104	broad.mit.edu	37	14	95053788	95053788	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:95053788G>A	uc001ydm.2	+	3	299	c.89G>A	c.(88-90)AGA>AAA	p.R30K	SERPINA5_uc010ave.2_Missense_Mutation_p.R30K|SERPINA5_uc001ydn.1_Missense_Mutation_p.R30K	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	30					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	ATGAAGAAGAGAGTCGAGGAC	0.627													9	29					0	0	0.000274275	0	0
DICER1	23405	broad.mit.edu	37	14	95570042	95570042	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:95570042G>A	uc001ydw.2	-	22	3873	c.3691C>T	c.(3691-3693)CCC>TCC	p.P1231S	DICER1_uc010avh.1_Missense_Mutation_p.P129S|DICER1_uc001ydv.2_Missense_Mutation_p.P1221S|DICER1_uc001ydx.2_Missense_Mutation_p.P1231S|DICER1_uc001ydy.1_Missense_Mutation_p.P83S	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1231					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		TCATCGCTGGGCTGGGGCTGG	0.433			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				10	45					0	0	0.00185496	0	0
CLMN	79789	broad.mit.edu	37	14	95658023	95658023	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:95658023G>A	uc001yef.2	-	13	3003	c.2887C>T	c.(2887-2889)CCG>TCG	p.P963S		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	963						integral to membrane	actin binding				0				Epithelial(152;0.193)		TCACTCTGCGGGCTGTGGCTC	0.532													11	66					0	0	0.00244969	0	0
CLMN	79789	broad.mit.edu	37	14	95669315	95669315	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:95669315G>A	uc001yef.2	-	9	2487	c.2371C>T	c.(2371-2373)CCC>TCC	p.P791S		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	791						integral to membrane	actin binding				0				Epithelial(152;0.193)		CTGGCACTGGGGAGGCTCTCT	0.642													4	17					0	0	0.00198382	0	0
CLMN	79789	broad.mit.edu	37	14	95670379	95670379	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:95670379G>A	uc001yef.2	-	9	1423	c.1307C>T	c.(1306-1308)CCT>CTT	p.P436L		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	436						integral to membrane	actin binding				0				Epithelial(152;0.193)		ACTGCAGAAAGGATCCTTGTA	0.478													23	83					0	0	0.000586117	0	0
BDKRB2	624	broad.mit.edu	37	14	96707016	96707016	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:96707016C>T	uc010avm.1	+	3	547	c.351C>T	c.(349-351)ATC>ATT	p.I117I	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.I90I|BDKRB2_uc001yfg.2_Silent_p.I117I	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	117	Helical; Name=2; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		CCATCACCATCTCCAACAACT	0.587													32	136					0	0	0.000814825	0	0
BDKRB2	624	broad.mit.edu	37	14	96707018	96707018	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:96707018C>T	uc010avm.1	+	3	549	c.353C>T	c.(352-354)TCC>TTC	p.S118F	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Missense_Mutation_p.S91F|BDKRB2_uc001yfg.2_Missense_Mutation_p.S118F	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	118	Helical; Name=2; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		ATCACCATCTCCAACAACTTC	0.587													34	131					0	0	0.00111076	0	0
AK7	122481	broad.mit.edu	37	14	96944872	96944872	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:96944872C>T	uc001yfn.2	+	15	1670	c.1626C>T	c.(1624-1626)ATC>ATT	p.I542I		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	542					cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CTGAGAGCATCGTGGCGGGGA	0.517													19	78					0	0	0.00188189	0	0
SETD3	84193	broad.mit.edu	37	14	99879391	99879391	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:99879391G>A	uc001ygc.2	-	8	916	c.746C>T	c.(745-747)TCT>TTT	p.S249F	SETD3_uc001ygd.2_Missense_Mutation_p.S249F|SETD3_uc001ygf.2_Missense_Mutation_p.S249F	NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	249	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				CATAACAGAAGAGACTGCCCA	0.418													11	35					0	0	0.000673444	0	0
CCNK	8812	broad.mit.edu	37	14	99959117	99959118	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:99959117_99959118CC>TT	uc001ygi.3	+	2	233_234	c.103_104CC>TT	c.(103-105)CCC>TTC	p.P35F	CCNK_uc001ygg.3_Missense_Mutation_p.P35F	NM_001099402	NP_001092872	O75909	CCNK_HUMAN	cyclin K isoform 1	35					cell division|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein kinase binding				0		all_cancers(154;0.224)|all_epithelial(191;0.0643)|Melanoma(154;0.0866)				GGCTCATACACCCTCACAACTT	0.51													6	24					0	0	6.4e-05	0	0
EML1	2009	broad.mit.edu	37	14	100402664	100402664	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:100402664C>T	uc001ygs.2	+	19	2157	c.2088C>T	c.(2086-2088)ATC>ATT	p.I696I	EML1_uc010tww.1_Silent_p.I684I|EML1_uc001ygr.2_Silent_p.I715I	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	696	WD 9.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				ACTACGAAATCCTCTACTGTG	0.498													11	27					0	0	0.000308642	0	0
MIR379	494328	broad.mit.edu	37	14	101488435	101488435	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:101488435G>A	hsa-mir-379|MI0000787	+			c.33G>A			uc010awa.1_RNA|MIR411_hsa-mir-411|MI0003675_5'Flank|uc001yjx.1_5'Flank|MIR299_hsa-mir-299|MI0000744_5'Flank|uc010awb.1_5'Flank|MIR380_hsa-mir-380|MI0000788_5'Flank																	0						TAGGCGTTATGATTTCTGACC	0.522													23	46					0	0	0.00047179	0	0
DIO3	1735	broad.mit.edu	37	14	102028428	102028428	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:102028428G>A	uc010txq.1	+	2	741	c.517G>A	c.(517-519)GAG>AAG	p.E173K	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	173	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				CATCTACATCGAGGAAGCGCA	0.642													15	84					0	0	0.000566183	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102471549	102471549	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:102471549C>T	uc001yks.2	+	26	5573	c.5409C>T	c.(5407-5409)CTC>CTT	p.L1803L		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1803	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AGCCCCCACTCCGAAGGCGGA	0.532													10	48					0	0	0.00136819	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102474652	102474652	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:102474652T>A	uc001yks.2	+	29	6119	c.5955T>A	c.(5953-5955)CAT>CAA	p.H1985Q		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1985	AAA 1 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TGCGTGAACATTCCAACCCCA	0.498													9	35					0	0	0.000978159	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102474655	102474655	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:102474655C>T	uc001yks.2	+	29	6122	c.5958C>T	c.(5956-5958)TCC>TCT	p.S1986S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1986	AAA 1 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GTGAACATTCCAACCCCAACT	0.488													9	33					0	0	0.000673444	0	0
TDRD9	122402	broad.mit.edu	37	14	104470649	104470649	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:104470649G>A	uc001yom.3	+	14	1588	c.1558G>A	c.(1558-1560)GAT>AAT	p.D520N	TDRD9_uc001yon.3_Missense_Mutation_p.D258N	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	520	Helicase C-terminal.				cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				CTCCATCCCTGATCATGTTGT	0.353													9	30					0	0	0.000978159	0	0
ASPG	374569	broad.mit.edu	37	14	104570766	104570766	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:104570766C>T	uc001yoq.1	+	8	939	c.879C>T	c.(877-879)ATC>ATT	p.I293I	ASPG_uc001yoo.1_Silent_p.I321I|ASPG_uc001yop.1_Silent_p.I293I|ASPG_uc001yor.1_Silent_p.I293I	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	293	Asparaginase.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						GCCTGGTCATCGTCAACTGTA	0.652													8	36					0	0	0.000442599	0	0
KIF26A	26153	broad.mit.edu	37	14	104641894	104641894	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:104641894G>A	uc001yos.3	+	12	2769	c.2769G>A	c.(2767-2769)CAG>CAA	p.Q923Q		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	923					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		GGGGTGACCAGAGAGAGGACA	0.672													4	25					0	0	0.00116845	0	0
AHNAK2	113146	broad.mit.edu	37	14	105406373	105406373	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:105406373C>T	uc010axc.1	-	7	15535	c.15415G>A	c.(15415-15417)GGG>AGG	p.G5139R	AHNAK2_uc001ypx.2_Missense_Mutation_p.G5039R	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5139						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGGACATCCCCGAGCCCACAT	0.582													14	56					0	0	0.00185496	0	0
AHNAK2	113146	broad.mit.edu	37	14	105412315	105412316	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:105412315_105412316GG>AA	uc010axc.1	-	7	9592_9593	c.9472_9473CC>TT	c.(9472-9474)CCA>TTA	p.P3158L	AHNAK2_uc001ypx.2_Missense_Mutation_p.P3058L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3158						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGACTTGCCTGGGGCAGACACC	0.589													71	126					0	0	6.4e-05	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418273	105418273	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:105418273G>A	uc010axc.1	-	7	3635	c.3515C>T	c.(3514-3516)TCG>TTG	p.S1172L	AHNAK2_uc001ypx.2_Missense_Mutation_p.S1072L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1172						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CGCCCCGAACGATGGCATCTT	0.612													52	159					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	106329488	106329488	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106329488C>T	uc010tyt.1	-	3591		c.54426G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_5'Flank|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						GCAGAATGTCCATCCTCACCC	0.552													13	38					0	0	0.00185496	0	0
ADAM6	8755	broad.mit.edu	37	14	106329519	106329519	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106329519G>A	uc010tyt.1	-	3588		c.54397_splice	c.e3588+1		uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_5'Flank|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CAGCCACCCAGAGACCTTCTG	0.567													5	27					0	0	0.000602214	0	0
ADAM6	8755	broad.mit.edu	37	14	106494266	106494266	+	RNA	SNP	C	T	T	rs1065550		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106494266C>T	uc010tyt.1	-	1760		c.34732G>A								Parts of antibodies, mostly variable regions.												0						CGCTTATCATCATTCCAATAA	0.537													7	38					0	0	0.00198382	0	0
ADAM6	8755	broad.mit.edu	37	14	106494539	106494539	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106494539G>A	uc010tyt.1	-	1759		c.34536C>T								Parts of antibodies, mostly variable regions.												0						CACATGAAGGGATGGTCAGCA	0.537													5	25					0	0	0.00116845	0	0
ADAM6	8755	broad.mit.edu	37	14	106573449	106573449	+	RNA	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106573449T>G	uc010tyt.1	-	1362		c.29076A>C								Parts of antibodies, mostly variable regions.												0						TGAAGGTGAATCCAGAGGCTG	0.552													12	90					0	0	0.00136819	0	0
ADAM6	8755	broad.mit.edu	37	14	106692152	106692152	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106692152C>T	uc010tyt.1	-	753		c.20301G>A								Parts of antibodies, mostly variable regions.												0						CAGTGCTGATCACCAAGTGGA	0.502													9	60					0	0	0.000442599	0	0
ADAM6	8755	broad.mit.edu	37	14	106733388	106733388	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106733388G>A	uc010tyt.1	-	547		c.17348C>T								Parts of antibodies, mostly variable regions.												0						GACCTTCACTGAGGCCCCAGG	0.577													16	113					0	0	0.000422831	0	0
ADAM6	8755	broad.mit.edu	37	14	106780771	106780771	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106780771C>T	uc010tyt.1	-	413		c.15091G>A								Parts of antibodies, mostly variable regions.												0						CCGAAGGCTTCACCAGTCCTG	0.627													9	41					0	0	0.000673444	0	0
ADAM6	8755	broad.mit.edu	37	14	106993982	106993982	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106993982C>T	uc010tyt.1	-	187		c.8465G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGAGCCT	0.537													23	83					0	0	0.00278032	0	0
ADAM6	8755	broad.mit.edu	37	14	106994058	106994058	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:106994058G>A	uc010tyt.1	-	187		c.8389C>T								Parts of antibodies, mostly variable regions.												0						GAGTCTCAGGGACCCCCCAGG	0.577													17	67					0	0	0.000566183	0	0
ADAM6	8755	broad.mit.edu	37	14	107218772	107218772	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:107218772G>A	uc010tyt.1	-	12		c.942C>T								Parts of antibodies, mostly variable regions.												0						TGGTGAATCGGCCCTTCACGG	0.547													30	132					0	0	0.0024448	0	0
Unknown	0	broad.mit.edu	37	15	20362835	20362835	+	Missense_Mutation	SNP	G	A	A	rs140551116	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:20362835G>A	uc001yte.1	+	1	148	c.97G>A	c.(97-99)GAG>AAG	p.E33K						SubName: Full=Putative uncharacterized protein ENSP00000349734;																		GGGCAACAGCGAGGGAAATGT	0.502													7	38					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	15	20496630	20496630	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:20496630G>A	uc001ytf.1	+	6		c.683G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCATGAAGGGGAAGCCGAGGG	0.438													8	98					0	0	0.000442599	0	0
MKRN3	7681	broad.mit.edu	37	15	23811327	23811327	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:23811327C>T	uc001ywh.3	+	1	874	c.398C>T	c.(397-399)TCG>TTG	p.S133L	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.S133L	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	133						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		GGTGGCGTTTCGCCGCCTGGG	0.627													17	70					0	0	0.000566183	0	0
MKRN3	7681	broad.mit.edu	37	15	23811677	23811677	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:23811677G>A	uc001ywh.3	+	1	1224	c.748G>A	c.(748-750)GGA>AGA	p.G250R	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.G250R	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	250	C3H1-type 2.					ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		TGCTTCCAGGGGAGTTTGCTT	0.567													10	38					0	0	0.000978159	0	0
C15orf2	23742	broad.mit.edu	37	15	24921093	24921093	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:24921093C>T	uc001ywo.2	+	1	553	c.79C>T	c.(79-81)CCC>TCC	p.P27S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	27					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CGCCCCCGCTCCCCTGTCCCG	0.701													5	23					0	0	0.00116845	0	0
C15orf2	23742	broad.mit.edu	37	15	24921125	24921125	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:24921125G>A	uc001ywo.2	+	1	585	c.111G>A	c.(109-111)CGG>CGA	p.R37R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	37			R -> Q (in a colorectal cancer sample; somatic mutation).		cell differentiation|multicellular organismal development|spermatogenesis			p.R37Q(1)		ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CGCCCGGTCGGGCTCACTCTG	0.721													5	24					0	0	0.000602214	0	0
C15orf2	23742	broad.mit.edu	37	15	24921521	24921521	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:24921521C>T	uc001ywo.2	+	1	981	c.507C>T	c.(505-507)ATC>ATT	p.I169I		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	169					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CGGTGCAGATCGAAGGGGAGG	0.612													6	35					0	0	0.00198382	0	0
C15orf2	23742	broad.mit.edu	37	15	24922957	24922957	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:24922957A>G	uc001ywo.2	+	1	2417	c.1943A>G	c.(1942-1944)AAA>AGA	p.K648R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	648					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTCAGCCCAAATTTGAGGCT	0.493													16	89					0	0	0.00074312	0	0
SNRPN	6638	broad.mit.edu	37	15	25222119	25222119	+	Silent	SNP	C	G	G	rs142287541	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:25222119C>G	uc001ywp.1	+	10	1253	c.363C>G	c.(361-363)CCC>CCG	p.P121P	SNRPN_uc001ywq.1_Silent_p.P121P|SNRPN_uc001ywr.1_Silent_p.P121P|SNRPN_uc001yws.1_Silent_p.P121P|SNRPN_uc001ywt.1_Silent_p.P121P|SNRPN_uc001ywv.1_Silent_p.P124P|SNRPN_uc001yww.1_Silent_p.P121P|SNRPN_uc001ywx.1_Silent_p.P121P|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	121					RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		TGCCAATTCCCCAGGCCCCTG	0.582									Prader-Willi_syndrome				3	38					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	15	25427441	25427441	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:25427441C>T	uc001yyy.1	+	3		c.271C>T			uc001yza.1_5'Flank|SNORD115-7_uc001yyw.1_RNA|SNORD115-7_uc001yyz.2_5'Flank					Homo sapiens clone Rt-7 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.																		AGATCGGGCCCTTCCTGGTGC	0.627													4	24					0	0	0.00024832	0	0
ATP10A	57194	broad.mit.edu	37	15	25958934	25958934	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:25958934G>A	uc010ayu.2	-	10	2337	c.2231C>T	c.(2230-2232)TCC>TTC	p.S744F		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	744	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		CTTGCGGACGGAATCGAAACC	0.602													11	66					0	0	0.00136819	0	0
HERC2	8924	broad.mit.edu	37	15	28424363	28424363	+	Missense_Mutation	SNP	C	T	T	rs137879939		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:28424363C>T	uc001zbj.2	-	58	9050	c.8944G>A	c.(8944-8946)GTT>ATT	p.V2982I		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2982	RCC1 6.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		AACGAAGGAACCTTTATCTAC	0.289													24	114					0	0	0.00106085	0	0
MTMR15	22909	broad.mit.edu	37	15	31218056	31218056	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:31218056C>T	uc001zff.2	+	10	2693	c.2402C>T	c.(2401-2403)GCC>GTC	p.A801V	MTMR15_uc001zfe.2_Missense_Mutation_p.A406V	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	801					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		GTGATGGAGGCCGGGGAGGCC	0.587								Direct_reversal_of_damage|Editing_and_processing_nucleases					37	184					0	0	0.000953801	0	0
RYR3	6263	broad.mit.edu	37	15	33835822	33835822	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:33835822G>A	uc001zhi.2	+	8	717	c.647_splice	c.e8-1	p.G216_splice	RYR3_uc010bar.2_Splice_Site_p.G216_splice	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3						cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTCTCTTACAGGATACCTACT	0.398													14	58					0	0	0.000308642	0	0
C15orf24	56851	broad.mit.edu	37	15	34376605	34376605	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:34376605G>A	uc001zhm.2	-	5	672	c.659C>T	c.(658-660)TCA>TTA	p.S220L	C15orf24_uc001zhn.2_Missense_Mutation_p.S103L	NM_020154	NP_064539	Q9NPA0	CO024_HUMAN	chromosome 15 open reading frame 24 precursor	220	Cytoplasmic (Potential).					cytoplasm|integral to membrane	carbohydrate binding|carboxypeptidase activity|purine nucleotide binding				0		all_lung(180;1.76e-08)		all cancers(64;2.02e-17)|GBM - Glioblastoma multiforme(113;2.15e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		AGATGATTTTGAAGAGAAGAG	0.468													13	81					0	0	0.00244969	0	0
C15orf24	56851	broad.mit.edu	37	15	34376656	34376656	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:34376656G>A	uc001zhm.2	-	5	621	c.608C>T	c.(607-609)TCC>TTC	p.S203F	C15orf24_uc001zhn.2_Missense_Mutation_p.S86F	NM_020154	NP_064539	Q9NPA0	CO024_HUMAN	chromosome 15 open reading frame 24 precursor	203	Cytoplasmic (Potential).					cytoplasm|integral to membrane	carbohydrate binding|carboxypeptidase activity|purine nucleotide binding				0		all_lung(180;1.76e-08)		all cancers(64;2.02e-17)|GBM - Glioblastoma multiforme(113;2.15e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		CTCATGGTTGGAATTCAGCAT	0.408													30	116					0	0	0.00178596	0	0
GJD2	57369	broad.mit.edu	37	15	35045253	35045253	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:35045253C>T	uc001zis.1	-	2	392	c.392G>A	c.(391-393)GGG>GAG	p.G131E	uc001zit.1_5'Flank	NM_020660	NP_065711	Q9UKL4	CXD2_HUMAN	gap junction protein, delta 2, 36kDa	131	Cytoplasmic (Potential).|Poly-Gly.				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_lung(180;9.67e-07)		all cancers(64;2.75e-18)|GBM - Glioblastoma multiforme(113;1.9e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		GCCCCCACCCCCAGTTCCTCC	0.562													24	82					0	0	0.00278032	0	0
ACTC1	70	broad.mit.edu	37	15	35083353	35083353	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:35083353C>T	uc001ziu.1	-	6	1195	c.952G>A	c.(952-954)GAA>AAA	p.E318K	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	318					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		GCAGTGATTTCCTTCTGCATA	0.453													44	188					0	0	0.000680045	0	0
BAHD1	22893	broad.mit.edu	37	15	40754187	40754187	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:40754187C>T	uc001zlu.2	+	3	1580	c.1509C>T	c.(1507-1509)CTC>CTT	p.L503L	BAHD1_uc001zlt.2_Silent_p.L502L|BAHD1_uc010bbp.1_Silent_p.L502L|BAHD1_uc001zlv.2_Silent_p.L503L	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	503					heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		CCCACCCACTCCTGGGGTGCC	0.652													7	33					0	0	0.000157383	0	0
INO80	54617	broad.mit.edu	37	15	41373247	41373247	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:41373247G>A	uc001zni.2	-	8	1111	c.898C>T	c.(898-900)CGT>TGT	p.R300C	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	300	Assembles INO80 complex module consisting of conserved components ACTR8, ACTL6A and YY1.|DBINO.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						AACAGGTTACGAGCTGAAGCT	0.308													37	181					0	0	0.00195071	0	0
EXD1	161829	broad.mit.edu	37	15	41509322	41509322	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:41509322G>A	uc001znk.2	-	2	250	c.59C>T	c.(58-60)TCA>TTA	p.S20L	EXD1_uc010ucv.1_Missense_Mutation_p.S78L	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	20					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						TGCTCTCACTGAGCCTTGTTC	0.358													16	39					0	0	0.000958276	0	0
RPAP1	26015	broad.mit.edu	37	15	41827083	41827083	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:41827083G>A	uc001zod.2	-	6	716	c.592C>T	c.(592-594)CCT>TCT	p.P198S		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	198						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CTGCTCCCAGGAAGCTGGCAG	0.552													11	48					0	0	0.000422831	0	0
TYRO3	7301	broad.mit.edu	37	15	41863851	41863851	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:41863851G>A	uc001zof.1	+	14	1943	c.1719G>A	c.(1717-1719)AAG>AAA	p.K573K		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	573	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CTTGCATGAAGGAGTTTGACC	0.463													8	103					0	0	0.000442599	0	0
MGA	23269	broad.mit.edu	37	15	42057156	42057156	+	Missense_Mutation	SNP	C	T	T	rs35259215		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:42057156C>T	uc010ucy.1	+	23	7998	c.7817C>T	c.(7816-7818)ACC>ATC	p.T2606I	MGA_uc010ucz.1_Missense_Mutation_p.T2397I	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2567						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CAATTGCTCACCCTAAAAGGT	0.458													19	90					0	0	0.00074312	0	0
ZFP106	64397	broad.mit.edu	37	15	42740572	42740573	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:42740572_42740573GG>AA	uc001zpw.2	-	3	3098_3099	c.2763_2764CC>TT	c.(2761-2766)CTCCGA>CTTTGA	p.R922*	ZFP106_uc001zpu.2_Nonsense_Mutation_p.R107*|ZFP106_uc001zpv.2_Nonsense_Mutation_p.R107*|ZFP106_uc001zpx.2_Nonsense_Mutation_p.R150*|ZFP106_uc010udh.1_Nonsense_Mutation_p.R705*	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	922						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TCACCTGTTCGGAGGGAGGCAG	0.48													17	90					0	0	6.4e-05	0	0
UBR1	197131	broad.mit.edu	37	15	43307948	43307948	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:43307948T>C	uc001zqq.2	-	29	3213	c.3147A>G	c.(3145-3147)AAA>AAG	p.K1049K	UBR1_uc010udk.1_Silent_p.K1049K	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1049					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		CATACATGAGTTTATGAGTTT	0.373													48	254					0	0	0.000781405	0	0
DUOX1	53905	broad.mit.edu	37	15	45440112	45440112	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:45440112G>A	uc001zus.1	+	21	2905	c.2559G>A	c.(2557-2559)GAG>GAA	p.E853E	DUOX1_uc001zut.1_Silent_p.E853E|DUOX1_uc010bee.1_Silent_p.E233E|DUOX1_uc001zuu.2_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	853	EF-hand 2.|Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		GCTCTCCTGAGGAAAAGTCTC	0.557													24	80					0	0	0.001512	0	0
SLC30A4	7782	broad.mit.edu	37	15	45783027	45783027	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:45783027G>A	uc001zvj.2	-	4	903	c.591C>T	c.(589-591)TTC>TTT	p.F197F		NM_013309	NP_037441	O14863	ZNT4_HUMAN	solute carrier family 30 (zinc transporter),	197	Helical; (Potential).				regulation of sequestering of zinc ion|response to toxin	endosome membrane|integral to membrane|late endosome	zinc ion transmembrane transporter activity				0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.58e-16)|GBM - Glioblastoma multiforme(94;2.15e-06)		CATATAAGAGGAATCCCATAA	0.353													21	70					0	0	0.00278032	0	0
SQRDL	58472	broad.mit.edu	37	15	45968449	45968449	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:45968449G>A	uc001zvt.2	+	7	994	c.805G>A	c.(805-807)GAT>AAT	p.D269N	SQRDL_uc001zvu.2_Missense_Mutation_p.D269N|SQRDL_uc001zvv.2_Missense_Mutation_p.D269N	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	269							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		AGTCCGAGCCGATAAACAAGA	0.478													18	70					0	0	0.00121646	0	0
SEMA6D	80031	broad.mit.edu	37	15	48060851	48060851	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:48060851C>T	uc010bek.2	+	18	2199	c.1839C>T	c.(1837-1839)ACC>ACT	p.T613T	SEMA6D_uc001zvw.2_Intron|SEMA6D_uc001zvy.2_Silent_p.T613T|SEMA6D_uc001zvz.2_Intron|SEMA6D_uc001zwa.2_Intron|SEMA6D_uc001zwb.2_Intron|SEMA6D_uc001zwc.2_Intron	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	613	Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		TGATTGATACCTGGAGACCTA	0.398													5	42					0	0	0.000602214	0	0
SLC12A1	6557	broad.mit.edu	37	15	48500145	48500145	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:48500145G>A	uc001zwn.3	+	2	445	c.229G>A	c.(229-231)GGA>AGA	p.G77R	SLC12A1_uc010uew.1_Intron|SLC12A1_uc010bem.2_Missense_Mutation_p.G77R|SLC12A1_uc010uex.1_Missense_Mutation_p.G77R	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	77	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	CCTCCAAAGTGGAGAAACTGC	0.423													15	41					0	0	0.000308642	0	0
CEP152	22995	broad.mit.edu	37	15	49073521	49073521	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:49073521G>A	uc001zwy.2	-	12	1483	c.1449C>T	c.(1447-1449)CTC>CTT	p.L483L	CEP152_uc001zwz.2_Silent_p.L483L|CEP152_uc001zxa.1_Silent_p.L390L	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	483	Potential.				centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		CAGATTCATAGAGAGAAATTT	0.299													12	108					0	0	0.00244969	0	0
FGF7	2252	broad.mit.edu	37	15	49776615	49776615	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:49776615T>C	uc001zxn.2	+	4	1028	c.499T>C	c.(499-501)TTA>CTA	p.L167L	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	167					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	GTTTGTTGCCTTAAATCAAAA	0.353													7	19					0	0	0.00198382	0	0
ATP8B4	79895	broad.mit.edu	37	15	50215657	50215657	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:50215657G>A	uc001zxu.2	-	17	1819	c.1677C>T	c.(1675-1677)TCC>TCT	p.S559S	ATP8B4_uc010ber.2_Silent_p.S432S|ATP8B4_uc010ufd.1_Silent_p.S369S|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	559	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		CTGCTCCTTTGGAATAAAGCT	0.373													6	29					0	0	0.00116845	0	0
SLC27A2	11001	broad.mit.edu	37	15	50489868	50489868	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:50489868C>T	uc001zxw.2	+	2	882	c.650C>T	c.(649-651)TCC>TTC	p.S217F	SLC27A2_uc010bes.2_Missense_Mutation_p.S217F|SLC27A2_uc001zxx.2_5'UTR	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	217	Lumenal (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		GTCACTTTTTCCACTCCTGCC	0.398													12	54					0	0	0.00244969	0	0
USP8	9101	broad.mit.edu	37	15	50782635	50782635	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:50782635C>T	uc001zym.3	+	15	2647	c.2147C>T	c.(2146-2148)TCC>TTC	p.S716F	USP8_uc001zyl.3_Missense_Mutation_p.S716F|USP8_uc001zyn.3_Missense_Mutation_p.S716F|USP8_uc010ufh.1_Missense_Mutation_p.S610F|USP8_uc001zyp.3_5'Flank	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	716					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		CTGAAGCGCTCCTACTCCTCC	0.483													19	65					0	0	0.000586117	0	0
TRPM7	54822	broad.mit.edu	37	15	50888556	50888556	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:50888556G>A	uc001zyt.3	-	23	3450	c.3186C>T	c.(3184-3186)ATC>ATT	p.I1062I	TRPM7_uc010bew.1_Silent_p.I1062I	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1062	Extracellular (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		AGATTTGAGGGATAACAGAAT	0.328													7	20					0	0	0.00198382	0	0
TRPM7	54822	broad.mit.edu	37	15	50902009	50902010	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:50902009_50902010GA>AT	uc001zyt.3	-	18	2693_2694	c.2429_2430TC>AT	c.(2428-2430)ATC>AAT	p.I810N	TRPM7_uc010bew.1_Missense_Mutation_p.I810N|TRPM7_uc001zyu.2_Missense_Mutation_p.I368N	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	810	Extracellular (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TTACCATGGGGATCTCTTCTGT	0.312													8	78					0	0	6.4e-05	0	0
CYP19A1	1588	broad.mit.edu	37	15	51504608	51504608	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:51504608C>T	uc001zyz.3	-	10	1423	c.1172G>A	c.(1171-1173)GGG>GAG	p.G391E	CYP19A1_uc001zza.3_Missense_Mutation_p.G391E|CYP19A1_uc001zzb.2_Missense_Mutation_p.G391E	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	391					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	AATGTTTGTCCCCTTTTTCAC	0.423													15	76					0	0	0.000422831	0	0
CYP19A1	1588	broad.mit.edu	37	15	51535086	51535086	+	Silent	SNP	C	T	T	rs143386224		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:51535086C>T	uc001zyz.3	-	3	275	c.24G>A	c.(22-24)CCG>CCA	p.P8P	CYP19A1_uc001zza.3_Silent_p.P8P|CYP19A1_uc001zzb.2_Silent_p.P8P|CYP19A1_uc001zzd.2_Silent_p.P8P|CYP19A1_uc010bey.1_Silent_p.P8P|CYP19A1_uc001zze.1_RNA	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	8					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity	p.P8L(1)|p.P8S(1)		skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	TATAATGTATCGGGTTCAGCA	0.478													25	100					0	0	0.0024448	0	0
DMXL2	23312	broad.mit.edu	37	15	51773152	51773152	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:51773152G>A	uc002abf.2	-	24	6376	c.6151C>T	c.(6151-6153)CTT>TTT	p.L2051F	DMXL2_uc002abd.2_Missense_Mutation_p.L121F|DMXL2_uc010ufy.1_Missense_Mutation_p.L2051F|DMXL2_uc010bfa.2_Missense_Mutation_p.L1415F	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2051						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TCAGTCATAAGGATCTTTAAA	0.363													13	96					0	0	0.00185496	0	0
WDR72	256764	broad.mit.edu	37	15	53997325	53997325	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:53997325C>T	uc002acj.2	-	11	1250	c.1208G>A	c.(1207-1209)GGA>GAA	p.G403E	WDR72_uc010bfi.1_Missense_Mutation_p.G403E	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	403	WD 5.									lung(1)|skin(1)	2				all cancers(107;0.0511)		TACAGCAGTTCCTGCCCCATC	0.388													21	112					0	0	0.00278032	0	0
UNC13C	440279	broad.mit.edu	37	15	54786930	54786930	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:54786930C>T	uc002ack.2	+	18	5058	c.5058C>T	c.(5056-5058)TCC>TCT	p.S1686S		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1686	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTGAATACTCCTTGTAAGTAG	0.348													25	109					0	0	0.001512	0	0
GCOM1	145781	broad.mit.edu	37	15	57910262	57910262	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:57910262G>A	uc002aei.2	+	3	313	c.194G>A	c.(193-195)AGG>AAG	p.R65K	GCOM1_uc002aej.2_Missense_Mutation_p.R65K|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.R65K|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.R65K|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	65					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GAACCTACCAGGAAACTTCCT	0.408													9	48					0	0	0.000673444	0	0
LIPC	3990	broad.mit.edu	37	15	58840562	58840562	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:58840562G>A	uc010bga.1	+	8	1450	c.842G>A	c.(841-843)CGA>CAA	p.R281Q	LIPC_uc010bfz.1_Missense_Mutation_p.R281Q|LIPC_uc002afa.1_Missense_Mutation_p.R281Q|LIPC_uc010bgb.1_Missense_Mutation_p.R179Q|LIPC_uc010ugy.1_Missense_Mutation_p.R220Q	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	281					cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		TCCCACGAGCGATCGGTGCAC	0.572													27	97					0	0	0.001512	0	0
FAM81A	145773	broad.mit.edu	37	15	59813483	59813483	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:59813483C>T	uc002agc.2	+	9	1200	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F		NM_152450	NP_689663	Q8TBF8	FA81A_HUMAN	hypothetical protein LOC145773	338										ovary(1)	1						AGCATAGGATCCCTCAGGCAA	0.443													14	39					0	0	0.000422831	0	0
RORA	6095	broad.mit.edu	37	15	60970872	60970872	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:60970872C>T	uc002agx.2	-	2	265	c.180G>A	c.(178-180)ACG>ACA	p.T60T		NM_134261	NP_599023	P35398	RORA_HUMAN	RAR-related orphan receptor A isoform a	Error:Variant_position_missing_in_P35398_after_alignment					positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						GTGTCTTCTTCGTTACTGAGA	0.413													6	37					0	0	0.00116845	0	0
VPS13C	54832	broad.mit.edu	37	15	62233965	62233965	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:62233965G>A	uc002agz.2	-	46	5524	c.5450C>T	c.(5449-5451)TCA>TTA	p.S1817L	VPS13C_uc002aha.2_Missense_Mutation_p.S1774L|VPS13C_uc002ahb.1_Missense_Mutation_p.S1817L|VPS13C_uc002ahc.1_Missense_Mutation_p.S1774L	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1817					protein localization					ovary(2)	2						TTTATACCTTGACAGCTTCAA	0.313													8	54					0	0	0.000274275	0	0
DAPK2	23604	broad.mit.edu	37	15	64218259	64218259	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:64218259C>T	uc002amr.2	-	8	724	c.693G>A	c.(691-693)ACG>ACA	p.T231T	DAPK2_uc010uim.1_RNA	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	231	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		TTTCCTGCTTCGTGTCTCCCA	0.488													8	59					0	0	0.000157383	0	0
DAPK2	23604	broad.mit.edu	37	15	64231517	64231517	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:64231517T>G	uc002amr.2	-	5	528	c.497A>C	c.(496-498)CAC>CCC	p.H166P	DAPK2_uc010uim.1_RNA|DAPK2_uc010bgu.1_Missense_Mutation_p.H156P	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	166	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		CAGCTTGATGTGTGGAATGGG	0.323													14	85					0	0	0.000566183	0	0
SLC24A1	9187	broad.mit.edu	37	15	65943172	65943172	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:65943172G>A	uc010ujf.1	+	7	2972	c.2685G>A	c.(2683-2685)GAG>GAA	p.E895E	SLC24A1_uc010ujd.1_Silent_p.E877E|SLC24A1_uc010uje.1_Silent_p.E877E|SLC24A1_uc010ujg.1_Silent_p.E895E|SLC24A1_uc010ujh.1_Silent_p.E877E|SLC24A1_uc010uji.1_Silent_p.E222E	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	895	Cytoplasmic (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						GAAATGAAGAGCCTCTGTCCC	0.318													9	37					0	0	0.000442599	0	0
LRRC49	54839	broad.mit.edu	37	15	71302271	71302271	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:71302271G>A	uc002asw.2	+	13	1780	c.1533G>A	c.(1531-1533)TGG>TGA	p.W511*	LRRC49_uc002asu.2_Nonsense_Mutation_p.W501*|LRRC49_uc002asx.2_Nonsense_Mutation_p.W467*|LRRC49_uc010ukf.1_Nonsense_Mutation_p.W516*|LRRC49_uc002asy.2_Nonsense_Mutation_p.W217*|LRRC49_uc002asz.2_Nonsense_Mutation_p.W483*	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	511						cytoplasm|microtubule				ovary(1)	1						TTACACTCTGGAAATACTATG	0.358													10	47					0	0	0.000673444	0	0
HCN4	10021	broad.mit.edu	37	15	73615572	73615572	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:73615572G>A	uc002avp.2	-	8	3856	c.2862C>T	c.(2860-2862)CTC>CTT	p.L954L		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	954	Pro-rich.|Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		AGTGCTCCGGGAGTCCCAGGC	0.741													5	20					0	0	0.000602214	0	0
PML	5371	broad.mit.edu	37	15	74336704	74336704	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:74336704C>T	uc002awv.2	+	9	2144	c.2004C>T	c.(2002-2004)TCC>TCT	p.S668S	PML_uc002awu.2_Silent_p.S620S|PML_uc010ule.1_Silent_p.S229S	NM_033238	NP_150241	P29590	PML_HUMAN	promyelocytic leukemia protein isoform 1	668					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis|endoplasmic reticulum calcium ion homeostasis|induction of apoptosis|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|maintenance of protein location in nucleus|negative regulation of angiogenesis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of mitotic cell cycle|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of telomerase activity|negative regulation of telomere maintenance via telomerase|negative regulation of transcription, DNA-dependent|negative regulation of translation in response to oxidative stress|PML body organization|PML body organization|positive regulation of defense response to virus by host|positive regulation of histone deacetylation|protein complex assembly|protein stabilization|protein targeting|regulation of calcium ion transport into cytosol|regulation of protein phosphorylation|response to hypoxia|response to virus|transcription, DNA-dependent	cytoplasm|cytosol|early endosome membrane|extrinsic to endoplasmic reticulum membrane|insoluble fraction|nuclear matrix|nuclear membrane|nucleolus|nucleus|PML body	cobalt ion binding|DNA binding|protein binding|protein binding|protein heterodimerization activity|protein homodimerization activity|SUMO binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding|zinc ion binding			central_nervous_system(2)|kidney(2)|breast(1)	5						TTCTGAGCTCCATGCGCCGCC	0.602			T	RARA|PAX5	APL|ALL								17	61					0	0	0.000958276	0	0
CSK	1445	broad.mit.edu	37	15	75091683	75091683	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:75091683C>T	uc010bkb.1	+	6	496	c.313C>T	c.(313-315)CTG>TTG	p.L105L	CSK_uc002ays.2_Silent_p.L105L|CSK_uc010bkc.1_5'UTR	NM_001127190	NP_001120662	P41240	CSK_HUMAN	c-src tyrosine kinase	105	SH2.				blood coagulation|epidermal growth factor receptor signaling pathway|T cell costimulation|T cell receptor signaling pathway	centrosome|cytosol|Golgi apparatus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein C-terminus binding			lung(2)|central_nervous_system(1)	3						AGGCCTGTTCCTGGTGCGGGA	0.627													11	31					0	0	0.000978159	0	0
SCAMP2	10066	broad.mit.edu	37	15	75143752	75143753	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:75143752_75143753GG>AA	uc002azb.1	-	5	487_488	c.413_414CC>TT	c.(412-414)TCC>TTT	p.S138F	SCAMP2_uc002aza.1_5'UTR|SCAMP2_uc010bkg.1_Intron	NM_005697	NP_005688	O15127	SCAM2_HUMAN	secretory carrier membrane protein 2	138	Cytoplasmic (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|nucleus|recycling endosome membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						GGATCTCTGTGGAGAAATCCTG	0.554													11	60					0	0	6.4e-05	0	0
CSPG4	1464	broad.mit.edu	37	15	75977176	75977176	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:75977176G>A	uc002baw.2	-	5	4443	c.4350C>T	c.(4348-4350)GCC>GCT	p.A1450A		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1450	Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						CCATCTCGGAGGCATTAGCCA	0.592													13	61					0	0	0.00244969	0	0
IREB2	3658	broad.mit.edu	37	15	78789604	78789604	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:78789604C>T	uc002bdr.2	+	21	2894	c.2732C>T	c.(2731-2733)TCT>TTT	p.S911F	IREB2_uc010unb.1_Missense_Mutation_p.S661F	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	911							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		GAAACATTTTCTTTAACATTT	0.348													8	39					0	0	0.000157383	0	0
PSMA4	5685	broad.mit.edu	37	15	78834883	78834884	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:78834883_78834884GG>AA	uc002bdu.3	+	4	263_264	c.105_106GG>AA	c.(103-108)TTGGGA>TTAAGA	p.G36R	PSMA4_uc010blf.2_Missense_Mutation_p.G36R|PSMA4_uc002bdv.3_Intron|PSMA4_uc002bdw.3_Missense_Mutation_p.G12R|PSMA4_uc002bdx.3_Intron	NM_002789	NP_002780	P25789	PSA4_HUMAN	proteasome alpha 4 subunit isoform 1	36					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	identical protein binding|threonine-type endopeptidase activity				0						GCACCTGTTTGGGAATTTTAGC	0.401													51	213					0	0	6.4e-05	0	0
CHRNB4	1143	broad.mit.edu	37	15	78922017	78922017	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:78922017C>T	uc002bed.1	-	5	742	c.630G>A	c.(628-630)AGG>AGA	p.R210R	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Silent_p.R28R	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	210	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						GGTTCACTGTCCTTCTCCCTG	0.552													23	109					0	0	0.00127121	0	0
RASGRF1	5923	broad.mit.edu	37	15	79265743	79265743	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:79265743G>A	uc002beq.2	-	26	3937	c.3562C>T	c.(3562-3564)CCT>TCT	p.P1188S	RASGRF1_uc002bep.2_Missense_Mutation_p.P1172S|RASGRF1_uc002beo.2_Missense_Mutation_p.P404S	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	1190	Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CCCAGGTAAGGGACACAGGGT	0.502													6	38					0	0	0.000157383	0	0
FAH	2184	broad.mit.edu	37	15	80464532	80464532	+	Silent	SNP	C	T	T	rs147016995	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:80464532C>T	uc002bfj.2	+	9	730	c.648C>T	c.(646-648)ATC>ATT	p.I216I	FAH_uc002bfk.1_Silent_p.I216I|FAH_uc002bfm.1_Silent_p.I216I|FAH_uc002bfn.1_Silent_p.I146I	NM_000137	NP_000128	P16930	FAAA_HUMAN	fumarylacetoacetase	216					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	fumarylacetoacetase activity|metal ion binding				0						GAGAGCCGATCCCCATTTCCA	0.507									Tyrosinemia_type_1				16	101					0	0	0.00121646	0	0
IL16	3603	broad.mit.edu	37	15	81592044	81592044	+	Missense_Mutation	SNP	C	T	T	rs149410949		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:81592044C>T	uc002bgh.3	+	14	2753	c.2377C>T	c.(2377-2379)CGC>TGC	p.R793C	IL16_uc010blq.1_Missense_Mutation_p.R747C|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.R835C|IL16_uc002bgg.2_Missense_Mutation_p.R793C|IL16_uc002bgi.1_Missense_Mutation_p.R183C|IL16_uc002bgj.2_Missense_Mutation_p.R287C|IL16_uc002bgk.2_Missense_Mutation_p.R92C|IL16_uc002bgl.1_Missense_Mutation_p.R92C|IL16_uc010unq.1_Missense_Mutation_p.R92C	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	793					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						AGCCTGGTTTCGCCAAAGCTT	0.562													11	50					0	0	0.000978159	0	0
EFTUD1	79631	broad.mit.edu	37	15	82444573	82444573	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:82444573G>A	uc002bgt.1	-	18	2391	c.2222C>T	c.(2221-2223)ACC>ATC	p.T741I	EFTUD1_uc002bgs.1_Missense_Mutation_p.T112I|EFTUD1_uc002bgu.1_Missense_Mutation_p.T690I	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	741					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						AGTTGTTATGGTGATTAGCCC	0.428													20	76					0	0	0.00188189	0	0
AP3B2	8120	broad.mit.edu	37	15	83346056	83346056	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:83346056T>C	uc010uoh.1	-	13	1635	c.1458A>G	c.(1456-1458)AAA>AAG	p.K486K	AP3B2_uc010uoi.1_Silent_p.K486K|AP3B2_uc010uoj.1_Silent_p.K454K|AP3B2_uc010uog.1_Silent_p.K122K	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	486					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TTGCCAAGTGTTTGATGATCT	0.438													8	31					0	0	0.000673444	0	0
BNC1	646	broad.mit.edu	37	15	83932016	83932016	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:83932016C>T	uc002bjt.1	-	4	2075	c.1987G>A	c.(1987-1989)GAA>AAA	p.E663K	BNC1_uc010uos.1_Missense_Mutation_p.E651K	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	663					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						ACTTGGGGTTCCATCCCAGGT	0.532													6	31					0	0	0.00116845	0	0
SH3GL3	6457	broad.mit.edu	37	15	84286953	84286953	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:84286953G>A	uc002bjw.2	+	9	1153	c.958G>A	c.(958-960)GAA>AAA	p.E320K	SH3GL3_uc002bjx.2_Missense_Mutation_p.E251K|SH3GL3_uc002bju.2_Missense_Mutation_p.E328K|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	320	SH3.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						TCAAATAGATGAAAACTGGTA	0.408													12	58					0	0	0.000978159	0	0
ALPK3	57538	broad.mit.edu	37	15	85406076	85406076	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:85406076C>T	uc002ble.2	+	10	5113	c.4946C>T	c.(4945-4947)TCC>TTC	p.S1649F	ALPK3_uc010upc.1_5'Flank	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1649	Alpha-type protein kinase.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ATCAAGGTGTCCAGCCTGCTT	0.572													12	55					0	0	0.00136819	0	0
AGBL1	123624	broad.mit.edu	37	15	86808009	86808009	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:86808009G>A	uc002blz.1	+	10	1549	c.1469G>A	c.(1468-1470)TGG>TAG	p.W490*	AGBL1_uc002bma.1_Nonsense_Mutation_p.W221*|AGBL1_uc002bmb.1_Nonsense_Mutation_p.W184*	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	490					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						CCTGATGTCTGGGGACACTGT	0.507													11	60					0	0	0.000978159	0	0
ACAN	176	broad.mit.edu	37	15	89400471	89400471	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:89400471G>A	uc010upo.1	+	12	5029	c.4655G>A	c.(4654-4656)GGA>GAA	p.G1552E	ACAN_uc010upp.1_Missense_Mutation_p.G1552E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1552					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CCTTCTGGAGGAGAAGGTCTA	0.537													7	24					0	0	0.000274275	0	0
RLBP1	6017	broad.mit.edu	37	15	89753635	89753635	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:89753635C>T	uc002bnl.2	-	9	1215	c.835G>A	c.(835-837)GAG>AAG	p.E279K		NM_000326	NP_000317	P12271	RLBP1_HUMAN	retinaldehyde binding protein 1	279	CRAL-TRIO.				response to stimulus|visual perception|vitamin A metabolic process	cytoplasm|soluble fraction	retinol binding|transporter activity			central_nervous_system(1)	1	Lung NSC(78;0.0472)|all_lung(78;0.089)				Vitamin A(DB00162)	TCATCGATCTCCTGGTAGAAA	0.582													12	55					0	0	0.00244969	0	0
ANPEP	290	broad.mit.edu	37	15	90336292	90336292	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:90336292C>T	uc002bop.3	-	16	2515	c.2223G>A	c.(2221-2223)AGG>AGA	p.R741R		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	741	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CTGGGATCTCCCTCCAGTTGT	0.488													18	166					0	0	0.00278032	0	0
ANPEP	290	broad.mit.edu	37	15	90344717	90344717	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:90344717T>C	uc002bop.3	-	11	1983	c.1691A>G	c.(1690-1692)GAG>GGG	p.E564G		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	564	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	GAGGAAGTGCTCCTGGGAAAG	0.607													9	53					0	0	0.000442599	0	0
FES	2242	broad.mit.edu	37	15	91433182	91433182	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:91433182C>G	uc002bpv.2	+	8	1135	c.1039C>G	c.(1039-1041)CCC>GCC	p.P347A	FES_uc010uqj.1_Missense_Mutation_p.P289A|FES_uc010uqk.1_Missense_Mutation_p.P329A|FES_uc002bpw.2_RNA|FES_uc010bny.2_Missense_Mutation_p.P289A|FES_uc002bpx.2_Missense_Mutation_p.P347A|FES_uc002bpy.2_Missense_Mutation_p.P289A	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	347	Potential.				axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GAACACCCACCCCCGGGAGCG	0.657													24	154					0	0	0.00278032	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92981653	92981653	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:92981653G>A	uc002bra.2	+	4	516	c.361G>A	c.(361-363)GAT>AAT	p.D121N	ST8SIA2_uc002brb.2_Missense_Mutation_p.D100N	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	121	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			GAAGCCTGGAGATATTATTCA	0.443													32	145					0	0	0.000692331	0	0
CHD2	1106	broad.mit.edu	37	15	93515552	93515552	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:93515552C>T	uc002bsp.2	+	19	2985	c.2410C>T	c.(2410-2412)CGA>TGA	p.R804*	CHD2_uc002bso.1_Nonsense_Mutation_p.R804*|CHD2_uc010bog.1_Nonsense_Mutation_p.R49*|CHD2_uc010boh.1_Intron	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	804	Helicase C-terminal.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GACAAGACTTCGAGAAAGGGG	0.378													15	53					0	0	0.00244969	0	0
MCTP2	55784	broad.mit.edu	37	15	94899414	94899414	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:94899414C>T	uc002btj.2	+	8	1119	c.1054C>T	c.(1054-1056)CAA>TAA	p.Q352*	MCTP2_uc010urg.1_Nonsense_Mutation_p.Q352*|MCTP2_uc002bti.2_Nonsense_Mutation_p.Q352*|MCTP2_uc010boj.2_Nonsense_Mutation_p.Q81*|MCTP2_uc010bok.2_Nonsense_Mutation_p.Q352*|MCTP2_uc002btk.3_5'UTR|MCTP2_uc002btl.2_5'UTR	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	352	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GAAAAAGAACCAACTCTGGAA	0.398													16	73					0	0	0.000958276	0	0
LRRK1	79705	broad.mit.edu	37	15	101567520	101567520	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr15:101567520C>T	uc002bwr.2	+	18	2779	c.2460C>T	c.(2458-2460)TTC>TTT	p.F820F	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	820	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGCTGATTTTCCACGTCACGT	0.572													10	63					0	0	0.000673444	0	0
MPG	4350	broad.mit.edu	37	16	135716	135717	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:135716_135717CC>TT	uc002cfn.2	+	5	1155_1156	c.837_838CC>TT	c.(835-840)GTCCGG>GTTTGG	p.R280W	MPG_uc002cfm.2_Missense_Mutation_p.R263W|MPG_uc002cfo.2_Missense_Mutation_p.R275W|NPRL3_uc010uua.1_Intron|NPRL3_uc002cfp.1_Intron	NM_002434	NP_002425	P29372	3MG_HUMAN	N-methylpurine-DNA glycosylase isoform a	280					depurination|DNA dealkylation involved in DNA repair	nucleoplasm	alkylbase DNA N-glycosylase activity|damaged DNA binding|identical protein binding			ovary(1)|skin(1)	2		all_cancers(16;9.01e-08)|all_epithelial(16;7.64e-07)|Hepatocellular(780;0.000325)|Lung NSC(18;0.0104)|all_lung(18;0.0239)				GCTTCTATGTCCGGGGCAGCCC	0.624								BER_DNA_glycosylases					15	23					0	0	6.4e-05	0	0
ITFG3	83986	broad.mit.edu	37	16	314847	314847	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:314847C>T	uc002cgf.2	+	13	1680	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I	ITFG3_uc002cgg.2_Silent_p.I495I|ITFG3_uc010uud.1_Intron|ITFG3_uc002cgh.2_Silent_p.I495I	NM_032039	NP_114428	Q9H0X4	ITFG3_HUMAN	integrin alpha FG-GAP repeat containing 3	495	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(16;0.000129)|all_epithelial(16;0.000206)|Hepatocellular(16;0.00264)|Lung NSC(18;0.0626)|all_lung(18;0.13)				CCGCCTACATCCTTCTGACAG	0.672													9	12					0	0	0.00136819	0	0
NPW	283869	broad.mit.edu	37	16	2070544	2070544	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:2070544G>A	uc002coh.3	+	2	804	c.422G>A	c.(421-423)AGA>AAA	p.R141K		NM_001099456	NP_001092926	Q8N729	NPW_HUMAN	neuropeptide W preproprotein	141					feeding behavior|neuropeptide signaling pathway	extracellular region					0						AGACTTCGGAGAGACGTCTCC	0.716													9	33					0	0	0.00136819	0	0
SRRM2	23524	broad.mit.edu	37	16	2808509	2808509	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:2808509C>A	uc002crk.2	+	5	1103	c.554C>A	c.(553-555)CCA>CAA	p.P185Q	SRRM2_uc002crj.1_Missense_Mutation_p.P89Q|SRRM2_uc002crl.1_Missense_Mutation_p.P185Q|SRRM2_uc010bsu.1_Missense_Mutation_p.P89Q	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	185	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TCACCAACCCCAaagcagaag	0.398													8	210					0.000442599	0.00155673	0.000442599	1	0
ZG16B	124220	broad.mit.edu	37	16	2881830	2881830	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:2881830G>A	uc002cru.2	+	4	373	c.297G>A	c.(295-297)GTG>GTA	p.V99V		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	99						extracellular region	sugar binding			ovary(1)	1						CCTGGGACGTGAAACTGGGAG	0.567													19	23					0	0	0.000958276	0	0
OR1F2P	26184	broad.mit.edu	37	16	3266132	3266132	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:3266132C>T	uc010uwv.1	+	1	571	c.423C>T	c.(421-423)CCC>CCT	p.P141P		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						ACACCATCCCCCACATCTTCT	0.537													8	17					0	0	0.000442599	0	0
CREBBP	1387	broad.mit.edu	37	16	3819257	3819257	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:3819257G>T	uc002cvv.2	-	15	3182	c.2978C>A	c.(2977-2979)CCT>CAT	p.P993H	CREBBP_uc002cvw.2_Missense_Mutation_p.P955H	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	993					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TTCCAGCACAGGTACGTCAGG	0.602			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				7	104					0.00198382	0.00694728	0.00198382	1	0
UBN1	29855	broad.mit.edu	37	16	4924587	4924587	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:4924587C>T	uc002cyb.2	+	15	2515	c.2176C>T	c.(2176-2178)CCA>TCA	p.P726S	UBN1_uc010uxw.1_Missense_Mutation_p.P726S|UBN1_uc002cyc.2_Missense_Mutation_p.P726S	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	726					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						TCCTTCTGCTCCACCACCAGC	0.502													80	169					0	0	0.000781405	0	0
A2BP1	54715	broad.mit.edu	37	16	7629803	7629803	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:7629803G>A	uc002cys.2	+	6	1283	c.295G>A	c.(295-297)GAT>AAT	p.D99N	A2BP1_uc010buf.1_Missense_Mutation_p.D99N|A2BP1_uc002cyr.1_Missense_Mutation_p.D98N|A2BP1_uc002cyt.2_Missense_Mutation_p.D99N|A2BP1_uc010uxz.1_Missense_Mutation_p.D142N|A2BP1_uc010uya.1_Intron|A2BP1_uc002cyv.1_Missense_Mutation_p.D99N|A2BP1_uc010uyb.1_Missense_Mutation_p.D99N|A2BP1_uc002cyw.2_Missense_Mutation_p.D119N|A2BP1_uc002cyy.2_Missense_Mutation_p.D119N|A2BP1_uc002cyx.2_Missense_Mutation_p.D119N|A2BP1_uc010uyc.1_Missense_Mutation_p.D119N	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	99					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		AGCACCGACGGATGGCCAGCC	0.527													12	27					0	0	0.00185496	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857330	9857330	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:9857330G>A	uc002czo.3	-	13	4619	c.4071C>T	c.(4069-4071)CTC>CTT	p.L1357L	GRIN2A_uc010uym.1_Silent_p.L1357L|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1357	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGTCTGGCAAGAGAGACTTGC	0.537													14	31					0	0	0.000308642	0	0
MKL2	57496	broad.mit.edu	37	16	14342884	14342884	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:14342884G>A	uc010uza.1	+	13	2504	c.2349G>A	c.(2347-2349)CAG>CAA	p.Q783Q	MKL2_uc002dcg.2_Silent_p.Q733Q|MKL2_uc002dcj.2_Silent_p.Q28Q	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	772	Gln-rich.				cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						CTGTACCTCAGACACAAGACA	0.498													14	14					0	0	0.000308642	0	0
TMC5	79838	broad.mit.edu	37	16	19451758	19451758	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:19451758G>A	uc002dgc.3	+	3	1147	c.398G>A	c.(397-399)CGA>CAA	p.R133Q	TMC5_uc010vaq.1_Missense_Mutation_p.R133Q|TMC5_uc002dgb.3_Missense_Mutation_p.R133Q|TMC5_uc010var.1_Missense_Mutation_p.R133Q	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	133	Extracellular (Potential).					integral to membrane				skin(1)	1						GGATCTCAACGAAATCCTGAT	0.498													26	118					0	0	0.00106085	0	0
EEF2K	29904	broad.mit.edu	37	16	22262623	22262623	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:22262623C>T	uc002dki.2	+	6	1083	c.598C>T	c.(598-600)CGG>TGG	p.R200W	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	200	Alpha-type protein kinase.				insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		GGAGTATAATCGGCACAAGCC	0.612													5	17					0	0	0.000602214	0	0
POLR3E	55718	broad.mit.edu	37	16	22320279	22320279	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:22320279C>T	uc002dkk.2	+	5	355	c.199C>T	c.(199-201)CCC>TCC	p.P67S	POLR3E_uc002dkj.1_Missense_Mutation_p.P67S|POLR3E_uc002dkm.2_Missense_Mutation_p.P31S|POLR3E_uc010vbr.1_Missense_Mutation_p.P67S|POLR3E_uc002dkl.2_Missense_Mutation_p.P67S|POLR3E_uc010vbs.1_Missense_Mutation_p.P31S|POLR3E_uc010vbt.1_Intron	NM_018119	NP_060589	Q9NVU0	RPC5_HUMAN	RNA polymerase III polypeptide E	67					innate immune response|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA-directed RNA polymerase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.012)		CACCCTGAACCCCAACTATTG	0.617													24	53					0	0	0.00127121	0	0
SCNN1G	6340	broad.mit.edu	37	16	23208674	23208674	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:23208674G>A	uc002dlm.1	+	6	1142	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	335	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	CCATCGGCAGGATGAGTATCC	0.463													13	39					0	0	0.000308642	0	0
CACNG3	10368	broad.mit.edu	37	16	24372881	24372881	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:24372881C>T	uc002dmf.2	+	4	1845	c.645C>T	c.(643-645)TTC>TTT	p.F215F		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	215					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		ACTCGGAGTTCCTGAAGAAAT	0.522													16	30					0	0	0.000308642	0	0
RBBP6	5930	broad.mit.edu	37	16	24580206	24580206	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:24580206C>T	uc002dmh.2	+	17	3235	c.2195C>T	c.(2194-2196)CCA>CTA	p.P732L	RBBP6_uc010vcb.1_Missense_Mutation_p.P599L|RBBP6_uc002dmi.2_Missense_Mutation_p.P698L|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.P565L	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	732					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		CGGTCACCTCCATACCCCAGA	0.473													15	44					0	0	0.000566183	0	0
SLC5A11	115584	broad.mit.edu	37	16	24902310	24902310	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:24902310G>A	uc002dmu.2	+	9	1017	c.785G>A	c.(784-786)CGA>CAA	p.R262Q	SLC5A11_uc002dms.2_Missense_Mutation_p.R198Q|SLC5A11_uc010vcd.1_Missense_Mutation_p.R227Q|SLC5A11_uc002dmt.2_Intron|SLC5A11_uc010vce.1_Missense_Mutation_p.R192Q|SLC5A11_uc010bxt.2_Missense_Mutation_p.R198Q	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	262	Extracellular (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		CATATTTTCCGAGATCCGCTG	0.572													39	62					0	0	0.00222228	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147239	26147239	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:26147239C>T	uc002dof.2	+	2	1433	c.1041C>T	c.(1039-1041)TTC>TTT	p.F347F		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	347	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		TCCAGTATTTCCCCCTCTCCC	0.537													35	44					0	0	0.00058488	0	0
IL4R	3566	broad.mit.edu	37	16	27356321	27356321	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:27356321C>T	uc002don.2	+	5	583	c.341C>T	c.(340-342)TCC>TTC	p.S114F	IL4R_uc002dom.2_Missense_Mutation_p.S114F|IL4R_uc002dop.3_Missense_Mutation_p.S99F|IL4R_uc010bxy.2_Missense_Mutation_p.S114F|IL4R_uc002doo.2_5'UTR	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	114	Extracellular (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						TGGAAGGGCTCCTTCAAGCCC	0.667													17	54					0	0	0.000958276	0	0
APOB48R	55911	broad.mit.edu	37	16	28507203	28507203	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:28507203G>A	uc002dqb.1	+	2	851	c.841G>A	c.(841-843)GAG>AAG	p.E281K	uc010vct.1_Intron|APOB48R_uc010byg.1_Intron	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	281	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						CTTAGGCAGAGAGGAGGCCAG	0.612													6	24					0	0	0.00198382	0	0
SULT1A2	6799	broad.mit.edu	37	16	28606886	28606886	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:28606886G>A	uc002dqg.1	-	3	610	c.259C>T	c.(259-261)CCA>TCA	p.P87S	uc010vct.1_Intron|SULT1A2_uc002dqh.1_Missense_Mutation_p.P87S	NM_177528	NP_803564	P50226	ST1A2_HUMAN	sulfotransferase family, cytosolic, 1A,	87					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine biosynthetic process|catecholamine metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						GGAATCCCTGGGACTTTGAAC	0.587													17	36					0	0	0.000958276	0	0
ATXN2L	11273	broad.mit.edu	37	16	28842006	28842007	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:28842006_28842007TC>GT	uc002drc.2	+	9	1273_1274	c.1105_1106TC>GT	c.(1105-1107)TCT>GTT	p.S369V	uc010vct.1_Intron|ATXN2L_uc010byl.1_Missense_Mutation_p.S369V|ATXN2L_uc002drb.2_Missense_Mutation_p.S369V|ATXN2L_uc002dqy.2_Missense_Mutation_p.S369V|ATXN2L_uc002dra.2_Missense_Mutation_p.S369V|ATXN2L_uc002dqz.2_Missense_Mutation_p.S369V|ATXN2L_uc010vdb.1_Missense_Mutation_p.S369V|ATXN2L_uc002dre.2_Missense_Mutation_p.S369V|ATXN2L_uc002drf.2_5'UTR	NM_007245	NP_009176	Q8WWM7	ATX2L_HUMAN	ataxin 2 related protein isoform A	369						membrane				upper_aerodigestive_tract(1)|ovary(1)	2						ATGCAGCAGCTCTCGGGGCGGT	0.604													14	41					0	0	6.4e-05	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29896986	29896986	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:29896986G>A	uc002duq.3	-	8	1533	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Silent_p.I361I|SEZ6L2_uc002dur.3_Silent_p.I361I|SEZ6L2_uc002dus.3_Silent_p.I317I|SEZ6L2_uc010vec.1_Silent_p.I431I|SEZ6L2_uc010ved.1_Silent_p.I387I	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	431	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GGGCGTCACTGATGAGACCCC	0.592													28	41					0	0	0.00106085	0	0
SRCAP	10847	broad.mit.edu	37	16	30748566	30748566	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:30748566C>G	uc002dze.1	+	34	7590	c.7205C>G	c.(7204-7206)GCC>GGC	p.A2402G	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.A2197G	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2402					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CTTCGTGGAGCCCGGGCTGAG	0.632													12	39					0	0	0.000978159	0	0
FBXL19	54620	broad.mit.edu	37	16	30958239	30958239	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:30958239C>T	uc002eab.2	+	10	2034	c.1876C>T	c.(1876-1878)CGC>TGC	p.R626C	FBXL19_uc002dzz.1_Missense_Mutation_p.R314C|FBXL19_uc002eaa.1_Missense_Mutation_p.R525C|ORAI3_uc002eac.2_5'Flank	NM_001099784	NP_001093254	Q6PCT2	FXL19_HUMAN	F-box and leucine-rich repeat protein 19	626	LRR 4.						DNA binding|zinc ion binding			ovary(2)|lung(1)|breast(1)	4						GTCCCCACTCCGCGAGACCCT	0.687													7	18					0	0	0.000274275	0	0
TRIM72	493829	broad.mit.edu	37	16	31230790	31230790	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:31230790G>T	uc002ebn.1	+	4	896	c.667G>T	c.(667-669)GAG>TAG	p.E223*	PYDC1_uc002ebo.2_5'Flank	NM_001008274	NP_001008275	Q6ZMU5	TRI72_HUMAN	tripartite motif-containing 72	223					exocytosis|muscle organ development|muscle system process|plasma membrane repair|protein homooligomerization	cytoplasmic vesicle membrane|sarcolemma	phosphatidylserine binding|zinc ion binding				0						GCGGCAGATGGAGAAGGTCCT	0.677													16	45					1.37285e-15	4.87894e-15	0.000422831	1	0
ITGAX	3687	broad.mit.edu	37	16	31382509	31382509	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:31382509G>A	uc002ebu.1	+	15	1882	c.1815G>A	c.(1813-1815)GGG>GGA	p.G605G	ITGAX_uc002ebt.2_Silent_p.G605G|ITGAX_uc010vfk.1_Silent_p.G255G	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	605	FG-GAP 7.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGGCTGTGGGGGCCCGGGGCC	0.662													24	28					0	0	0.000586117	0	0
ITGAD	3681	broad.mit.edu	37	16	31421715	31421715	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:31421715G>A	uc002ebv.1	+	11	1133	c.1084_splice	c.e11-1	p.D362_splice	ITGAD_uc010cap.1_Splice_Site_p.D362_splice	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor						cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						TTTCCTCCCAGGATGGCCTCT	0.577													23	59					0	0	0.000586117	0	0
ARMC5	79798	broad.mit.edu	37	16	31477422	31477422	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:31477422C>T	uc002ecc.2	+	6	2549	c.2020C>T	c.(2020-2022)CTG>TTG	p.L674L	ARMC5_uc010vfn.1_Silent_p.L769L|ARMC5_uc010vfo.1_Silent_p.L706L|ARMC5_uc002eca.3_3'UTR|ARMC5_uc010vfp.1_Silent_p.L482L|ARMC5_uc002ecb.2_3'UTR	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	674							binding			pancreas(1)	1						GTGGCGCCGGCTGCTTCTGGA	0.662													19	38					0	0	0.000958276	0	0
MYLK3	91807	broad.mit.edu	37	16	46781861	46781861	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:46781861G>A	uc002eei.3	-	1	361	c.245C>T	c.(244-246)CCC>CTC	p.P82L	MYLK3_uc010vge.1_Intron	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	82					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				GTCAATGTGGGGAACCCCATC	0.706													10	11					0	0	0.000673444	0	0
ZNF423	23090	broad.mit.edu	37	16	49670603	49670603	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:49670603G>A	uc002efs.2	-	5	2758	c.2460C>T	c.(2458-2460)ATC>ATT	p.I820I	ZNF423_uc010vgn.1_Silent_p.I703I	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	820	C2H2-type 20.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TCTCCAGCAGGATGATGGCGT	0.572													16	15					0	0	0.00074312	0	0
SLC12A3	6559	broad.mit.edu	37	16	56928523	56928523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:56928523C>T	uc010ccm.2	+	22	2631	c.2602C>T	c.(2602-2604)CAG>TAG	p.Q868*	SLC12A3_uc002ekd.3_Nonsense_Mutation_p.Q877*|SLC12A3_uc010ccn.2_Nonsense_Mutation_p.Q876*	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	868	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	CGTAGGCGGCCAGATTAACAG	0.587													18	28					0	0	0.00278032	0	0
GPR97	222487	broad.mit.edu	37	16	57713196	57713196	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:57713196C>T	uc002emh.2	+	5	703	c.600C>T	c.(598-600)ATC>ATT	p.I200I	GPR97_uc010vhv.1_Silent_p.I80I|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_5'Flank	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	200	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						CTCTGGAGATCGTCTTCTCTC	0.647													28	47					0	0	0.00283554	0	0
GOT2	2806	broad.mit.edu	37	16	58757769	58757769	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:58757769G>A	uc002eof.1	-	2	241	c.127C>T	c.(127-129)CCC>TCC	p.P43S	GOT2_uc010vim.1_Missense_Mutation_p.P43S	NM_002080	NP_002071	P00505	AATM_HUMAN	aspartate aminotransferase 2 precursor	43					aspartate catabolic process|fatty acid transport|gluconeogenesis|response to ethanol	mitochondrial matrix|plasma membrane	L-aspartate:2-oxoglutarate aminotransferase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CCCAGAATGGGATCTGGAGGT	0.443													20	102					0	0	0.00152264	0	0
CA7	766	broad.mit.edu	37	16	66886680	66886680	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:66886680G>A	uc002eqi.2	+	6	691	c.582G>A	c.(580-582)TGG>TGA	p.W194*	uc002eqh.2_Intron|CA7_uc002eqj.2_Nonsense_Mutation_p.W138*	NM_005182	NP_005173	P43166	CAH7_HUMAN	carbonic anhydrase VII isoform 1	194					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		GGCACTACTGGACCTACCCGG	0.597													15	26					0	0	0.000566183	0	0
KIAA0895L	653319	broad.mit.edu	37	16	67214391	67214392	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:67214391_67214392CC>TT	uc002ert.2	-	2	897_898	c.122_123GG>AA	c.(121-123)TGG>TAA	p.W41*	KIAA0895L_uc002err.2_5'Flank|KIAA0895L_uc002ers.2_5'Flank|KIAA0895L_uc002eru.2_Nonsense_Mutation_p.W41*|EXOC3L_uc002erv.1_RNA	NM_001040715	NP_001035805	Q68EN5	K895L_HUMAN	hypothetical protein LOC653319	41	Pro-rich.										0						GGGACTGAGACCAGGGGTACAG	0.678													20	36					0	0	6.4e-05	0	0
FHOD1	29109	broad.mit.edu	37	16	67270547	67270547	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:67270547G>A	uc002esl.2	-	11	1344	c.1232C>T	c.(1231-1233)CCC>CTC	p.P411L	FHOD1_uc010ced.2_Missense_Mutation_p.P218L|FHOD1_uc010vjh.1_Missense_Mutation_p.P71L	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	411	GBD/FH3.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		GAGACCGGAGGGAGGGCCCAC	0.592													16	23					0	0	0.00074312	0	0
HYDIN	54768	broad.mit.edu	37	16	70843758	70843758	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:70843758G>A	uc002ezr.2	-	85	14936	c.14808C>T	c.(14806-14808)GTC>GTT	p.V4936V	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4937										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGCTGCCAAGGACAGTCTGGA	0.498													102	204					0	0	0.000781405	0	0
HYDIN	54768	broad.mit.edu	37	16	70913365	70913365	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:70913365G>A	uc002ezr.2	-	62	10517	c.10389C>T	c.(10387-10389)CTC>CTT	p.L3463L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3464										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGTCAAACACGAGGCCTCGGC	0.567													10	22					0	0	0.00185496	0	0
TMEM170A	124491	broad.mit.edu	37	16	75481529	75481529	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:75481529G>A	uc002fee.1	-	3	448	c.362C>T	c.(361-363)GCC>GTC	p.A121V	TMEM170A_uc002feb.2_Missense_Mutation_p.A83V|TMEM170A_uc002fec.2_Missense_Mutation_p.A98V|TMEM170A_uc002fed.1_RNA	NM_145254	NP_660297	Q8WVE7	T170A_HUMAN	transmembrane protein 170A	121	Helical; (Potential).					integral to membrane					0						CAGTGTGAGGGCTTCAAATGG	0.408													29	50					0	0	0.00209593	0	0
CHST5	23563	broad.mit.edu	37	16	75563795	75563795	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:75563795C>T	uc002fei.2	-	3	1883	c.488G>A	c.(487-489)GGC>GAC	p.G163D	CHST5_uc002fej.1_Missense_Mutation_p.G169D	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	163	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GCTGATGGTGCCTCGGGGAAA	0.652													54	92					0	0	0.000781405	0	0
DYNLRB2	83657	broad.mit.edu	37	16	80583473	80583473	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:80583473C>T	uc002ffo.2	+	5	292	c.172C>T	c.(172-174)CGT>TGT	p.R58C	DYNLRB2_uc002ffp.2_RNA|DYNLRB2_uc002ffq.2_RNA	NM_130897	NP_570967	Q8TF09	DLRB2_HUMAN	dynein, light chain, roadblock-type 2	58					microtubule-based movement|transport	cytoplasmic dynein complex|microtubule	microtubule motor activity				0						AAGCACAGTTCGTGATATTGA	0.403													19	31					0	0	0.000958276	0	0
CDYL2	124359	broad.mit.edu	37	16	80667020	80667020	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:80667020C>T	uc002ffs.2	-	3	835	c.730G>A	c.(730-732)GAA>AAA	p.E244K		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	244						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CAGTTGCTTTCATTCTGGCGG	0.527													13	77					0	0	0.000308642	0	0
PKD1L2	114780	broad.mit.edu	37	16	81145960	81145960	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:81145960C>T	uc002fgh.1	-	42	6792	c.6792G>A	c.(6790-6792)GAG>GAA	p.E2264E	PKD1L2_uc002fgf.1_Silent_p.E64E|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2264	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTGCTGCTGTCTCACTGAAGC	0.517													18	22					0	0	0.00152264	0	0
BCMO1	53630	broad.mit.edu	37	16	81303789	81303789	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:81303789G>A	uc002fgn.1	+	7	1087	c.869G>A	c.(868-870)AGG>AAG	p.R290K	BCMO1_uc010vnp.1_Missense_Mutation_p.R221K	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	290					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						ATCGACCAAAGGACCAGGCAG	0.532													48	79					0	0	0.000781405	0	0
GAN	8139	broad.mit.edu	37	16	81398669	81398669	+	Missense_Mutation	SNP	C	T	T	rs150043237	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:81398669C>T	uc002fgo.2	+	8	1475	c.1327C>T	c.(1327-1329)CCC>TCC	p.P443S		NM_022041	NP_071324	Q9H2C0	GAN_HUMAN	gigaxonin	443	Kelch 4.				cell death	cytoplasm|neurofilament	protein binding			ovary(2)	2		Colorectal(91;0.153)				GTGTTATGATCCCAGGACCCA	0.502													14	18					0	0	0.00244969	0	0
CDH13	1012	broad.mit.edu	37	16	83520204	83520204	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:83520204G>A	uc002fgx.2	+	7	1024	c.904G>A	c.(904-906)GAT>AAT	p.D302N	CDH13_uc010vns.1_Missense_Mutation_p.D349N|CDH13_uc010vnt.1_Missense_Mutation_p.D48N|CDH13_uc010vnu.1_Missense_Mutation_p.D263N	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	302	Cadherin 2.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GTTCTACATCGATCCTGAGAA	0.488													24	29					0	0	0.00178596	0	0
MLYCD	23417	broad.mit.edu	37	16	83948703	83948703	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:83948703C>T	uc002fgz.2	+	5	1111	c.1091C>T	c.(1090-1092)TCG>TTG	p.S364L		NM_012213	NP_036345	O95822	DCMC_HUMAN	malonyl-CoA decarboxylase precursor	364					acyl-CoA metabolic process|fatty acid biosynthetic process	mitochondrion|peroxisome	malonyl-CoA decarboxylase activity|methylmalonyl-CoA decarboxylase activity				0						AAGGAAATCTCGGAGATCACA	0.547													60	113					0	0	0.000781405	0	0
ADAD2	161931	broad.mit.edu	37	16	84224894	84224894	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:84224894G>A	uc002fhr.2	+	1	172	c.58G>A	c.(58-60)GCT>ACT	p.A20T	ADAD2_uc002fhq.2_Missense_Mutation_p.A20T	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	20					RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						GCCCCGCCTGGCTGCATCGTT	0.597													16	13					0	0	0.000958276	0	0
KCNG4	93107	broad.mit.edu	37	16	84270480	84270480	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:84270480C>T	uc010voc.1	-	2	733	c.612G>A	c.(610-612)ATG>ATA	p.M204I	KCNG4_uc002fhu.1_Missense_Mutation_p.M204I	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	204						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GCAGCCGGTTCATGCACAGGC	0.682													16	24					0	0	0.00074312	0	0
SPG7	6687	broad.mit.edu	37	16	89598979	89598979	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:89598979C>T	uc002fnj.2	+	9	1280	c.1259C>T	c.(1258-1260)ACC>ATC	p.T420I	SPG7_uc002fni.2_Missense_Mutation_p.T420I	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	420	Mitochondrial matrix (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		CGCTCCACCACCATGTCCGGC	0.632													27	59					0	0	0.00178596	0	0
PRPF8	10594	broad.mit.edu	37	17	1585460	1585460	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:1585460G>A	uc002fte.2	-	4	511	c.397C>T	c.(397-399)CCC>TCC	p.P133S		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	133						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		ATGACCCAGGGAATCTCATTG	0.468													22	23					0	0	0.00188189	0	0
KIAA0664	23277	broad.mit.edu	37	17	2601573	2601573	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:2601573G>A	uc002fuy.1	-	10	1550	c.1464C>T	c.(1462-1464)ATC>ATT	p.I488I	KIAA0664_uc002fux.1_Silent_p.I420I	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	488							binding			breast(2)	2						GGATGCCGGGGATGATGGACT	0.667													8	14					0	0	0.000673444	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2901664	2901664	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:2901664C>T	uc010ckd.2	+	14	1284	c.1194C>T	c.(1192-1194)TCC>TCT	p.S398S	RAP1GAP2_uc010cke.2_Silent_p.S383S	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	398	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						AGACCCCATCCTACAAGGTAA	0.542													26	41					0	0	0.001512	0	0
ATP2A3	489	broad.mit.edu	37	17	3833709	3833709	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:3833709G>A	uc002fxb.1	-	18	2781	c.2630C>T	c.(2629-2631)TCC>TTC	p.S877F	ATP2A3_uc010ckn.1_5'UTR|ATP2A3_uc002fwx.1_Missense_Mutation_p.S877F|ATP2A3_uc002fwy.1_Missense_Mutation_p.S877F|ATP2A3_uc002fwz.1_Missense_Mutation_p.S877F|ATP2A3_uc002fxa.1_Missense_Mutation_p.S877F|ATP2A3_uc002fxc.1_Missense_Mutation_p.S877F|ATP2A3_uc002fxd.1_Missense_Mutation_p.S877F	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	877	Lumenal (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		GTTGTCTTCGGAGCACTTCAG	0.622													13	35					0	0	0.000422831	0	0
SPNS3	201305	broad.mit.edu	37	17	4348457	4348457	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:4348457C>T	uc002fxt.2	+	3	440	c.396C>T	c.(394-396)TCC>TCT	p.S132S	SPNS3_uc002fxu.2_Intron	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	132	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CCTTCATCTCCCCCCGGGTAC	0.622													6	43					0	0	0.000157383	0	0
PELP1	27043	broad.mit.edu	37	17	4576113	4576113	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:4576113G>A	uc002fyi.3	-	16	2399	c.2173C>T	c.(2173-2175)CCT>TCT	p.P725S	PELP1_uc010vsf.1_Missense_Mutation_p.P578S	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	725	Pro-rich.				transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						TCAGGGCCAGGAAGAAGCCGG	0.632													9	19					0	0	0.000274275	0	0
TM4SF5	9032	broad.mit.edu	37	17	4675331	4675331	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:4675331C>T	uc002fyw.1	+	1	145	c.114C>T	c.(112-114)ACC>ACT	p.T38T		NM_003963	NP_003954	O14894	T4S5_HUMAN	transmembrane 4 superfamily member 5	38	Extracellular (Potential).					integral to plasma membrane				ovary(1)	1						CCTCCTGGACCAACACCAACC	0.622													39	63					0	0	0.00148497	0	0
PLD2	5338	broad.mit.edu	37	17	4722387	4722387	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:4722387G>C	uc002fzc.2	+	22	2283	c.2182G>C	c.(2182-2184)GCA>CCA	p.A728P	PLD2_uc002fzd.2_Missense_Mutation_p.A728P	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	728	Catalytic.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	AGTGGGGACAGCATGGCGGGA	0.592													21	33					0	0	0.00229938	0	0
MINK1	50488	broad.mit.edu	37	17	4797353	4797353	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:4797353C>T	uc010vsl.1	+	22	2831	c.2635C>T	c.(2635-2637)CCC>TCC	p.P879S	MINK1_uc010vsk.1_Missense_Mutation_p.P850S|MINK1_uc010vsm.1_Missense_Mutation_p.P859S|MINK1_uc010vsn.1_Missense_Mutation_p.P842S|MINK1_uc010vso.1_Missense_Mutation_p.P787S|MINK1_uc010vsp.1_Missense_Mutation_p.P340S	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	879	Mediates interaction with RAP2A.				JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						CGGGACCCAGCCCCCATACGG	0.667													9	10					0	0	0.000274275	0	0
SLC25A11	8402	broad.mit.edu	37	17	4841656	4841656	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:4841656G>A	uc002fzo.1	-	5	728	c.615C>T	c.(613-615)TCC>TCT	p.S205S	SLC25A11_uc002fzp.1_Silent_p.S201S|RNF167_uc002fzq.2_5'Flank|RNF167_uc002fzr.2_5'Flank|RNF167_uc002fzs.2_5'Flank|RNF167_uc002fzt.2_5'Flank|RNF167_uc002fzu.2_5'Flank|RNF167_uc002fzv.2_5'Flank|RNF167_uc002fzw.1_5'Flank|RNF167_uc002fzx.2_5'Flank	NM_003562	NP_003553	Q02978	M2OM_HUMAN	solute carrier family 25 member 11 isoform 1	205	Solcar 2.				gluconeogenesis	integral to plasma membrane|mitochondrial inner membrane	oxoglutarate:malate antiporter activity				0						AGAACTGCTTGGATTGGGAGT	0.627													34	43					0	0	0.00195071	0	0
USP6	9098	broad.mit.edu	37	17	5071275	5071275	+	Missense_Mutation	SNP	G	A	A	rs149187210		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:5071275G>A	uc002gau.1	+	34	5315	c.3085G>A	c.(3085-3087)GAG>AAG	p.E1029K	USP6_uc002gav.1_Missense_Mutation_p.E1029K|USP6_uc010ckz.1_Missense_Mutation_p.E712K	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	1029					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						AGCGCAAGCCGAGCCCATCAA	0.522			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								26	30					0	0	0.000878237	0	0
AIPL1	23746	broad.mit.edu	37	17	6330342	6330342	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:6330342C>T	uc002gcp.2	-	4	596	c.501G>A	c.(499-501)TGG>TGA	p.W167*	AIPL1_uc002gcq.2_Nonsense_Mutation_p.W107*|AIPL1_uc002gcr.2_Nonsense_Mutation_p.W104*|AIPL1_uc010clk.2_Nonsense_Mutation_p.W145*|AIPL1_uc010cll.2_Nonsense_Mutation_p.W167*|AIPL1_uc002gcs.2_Nonsense_Mutation_p.W167*	NM_014336	NP_055151	Q9NZN9	AIPL1_HUMAN	aryl hydrocarbon receptor interacting	167					protein farnesylation|protein folding|visual perception	cytoplasm|nucleus	farnesylated protein binding|unfolded protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		TGCTCAGGTTCCAGGTCTCCC	0.622													60	106					0	0	0.000781405	0	0
PITPNM3	83394	broad.mit.edu	37	17	6441394	6441394	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:6441394G>A	uc002gdd.3	-	2	182	c.31C>T	c.(31-33)CCC>TCC	p.P11S	PITPNM3_uc010cln.2_Missense_Mutation_p.P11S	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	11					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		CCGCCCGGGGGAGGACCACCT	0.557													8	19					0	0	0.000157383	0	0
SLC13A5	284111	broad.mit.edu	37	17	6597468	6597468	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:6597468G>A	uc002gdj.2	-	8	1192	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	SLC13A5_uc010vtf.1_Silent_p.F368F|SLC13A5_uc010clq.2_Silent_p.F325F|SLC13A5_uc002gdk.2_Silent_p.F351F	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	368	Helical; (Potential).					integral to membrane	citrate transmembrane transporter activity				0						AAGGCACAATGAATAGCAGGG	0.527													16	33					0	0	0.00121646	0	0
SLC13A5	284111	broad.mit.edu	37	17	6609960	6609960	+	Splice_Site	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:6609960C>T	uc002gdj.2	-	3	456	c.368_splice	c.e3+1	p.R123_splice	SLC13A5_uc010vtf.1_Splice_Site_p.R123_splice|SLC13A5_uc010clq.2_Splice_Site_p.R80_splice|SLC13A5_uc002gdk.2_Splice_Site_p.R123_splice|SLC13A5_uc002gdl.1_5'Flank	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a							integral to membrane	citrate transmembrane transporter activity				0						GGCGTAATTACCGTGCAGGCT	0.657													4	13					0	0	0.00024832	0	0
C17orf81	23587	broad.mit.edu	37	17	7161984	7161984	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:7161984C>T	uc002gfg.1	+	7	824	c.717C>T	c.(715-717)TCC>TCT	p.S239S	C17orf81_uc002gfj.2_Silent_p.S239S|C17orf81_uc010cmb.2_Silent_p.S239S|C17orf81_uc002gfh.1_Silent_p.S239S|C17orf81_uc002gfi.1_Silent_p.S239S|C17orf81_uc002gfl.1_Silent_p.S239S	NM_203415	NP_981960	Q8TE02	DERP6_HUMAN	S-phase 2 protein isoform 4	239					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding				0						AGCCCTACTCCGATCCTCATA	0.488													61	85					0	0	0.000781405	0	0
SLC2A4	6517	broad.mit.edu	37	17	7187572	7187572	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:7187572C>T	uc002gfp.2	+	6	801	c.601C>T	c.(601-603)CTG>TTG	p.L201L	SLC2A4_uc002gfo.2_Silent_p.L201L|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	201	Extracellular (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						CACTGCCAGCCTGTGGCCACT	0.627													27	37					0	0	0.0024448	0	0
TP53	7157	broad.mit.edu	37	17	7576897	7576897	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:7576897G>A	uc002gim.2	-	9	1143	c.949C>T	c.(949-951)CAG>TAG	p.Q317*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.Q317*|TP53_uc010cne.1_RNA|TP53_uc010cnf.1_Nonsense_Mutation_p.Q185*|TP53_uc010cng.1_Nonsense_Mutation_p.Q185*|TP53_uc002gii.1_Nonsense_Mutation_p.Q185*|TP53_uc010cnh.1_Nonsense_Mutation_p.Q317*|TP53_uc010cni.1_Nonsense_Mutation_p.Q317*|TP53_uc002gij.2_Nonsense_Mutation_p.Q317*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	317	Bipartite nuclear localization signal.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.		Q -> H (in a kidney cancer with no family history; germline mutation and in a sporadic cancer; somatic mutation).|Q -> P (in a sporadic cancer; somatic mutation).|Q -> K (in sporadic cancers; somatic mutation).|Q -> L (in a sporadic cancer; somatic mutation).|Q -> R (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Q317*(19)|p.0?(7)|p.Q317K(3)|p.Q317R(2)|p.S315fs*22(1)|p.?(1)|p.S314fs*25(1)|p.L308fs*15(1)|p.Q317P(1)|p.Q317fs*28(1)|p.Q317fs*45(1)|p.Q317fs*19(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TTCTTTGGCTGGGGAGAGGAG	0.473		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			42	49					0	0	0.000781405	0	0
EFNB3	1949	broad.mit.edu	37	17	7611341	7611341	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:7611341C>T	uc002gis.2	+	2	585	c.188C>T	c.(187-189)CCC>CTC	p.P63L		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	63	Extracellular (Potential).				cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				CTGCTCTGCCCCCGGGCCCGG	0.622													44	50					0	0	0.00195071	0	0
DNAH2	146754	broad.mit.edu	37	17	7722593	7722593	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:7722593G>A	uc002giu.1	+	71	10896	c.10882G>A	c.(10882-10884)GAC>AAC	p.D3628N	DNAH2_uc010cnm.1_Missense_Mutation_p.D566N	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3628					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GGGCTGCATCGACCCCATGTA	0.557													30	44					0	0	0.00058488	0	0
PER1	5187	broad.mit.edu	37	17	8054012	8054013	+	Silent	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:8054012_8054013GG>AA	uc002gkd.2	-	2	250_251	c.12_13CC>TT	c.(10-15)CCCCTA>CCTTTA	p.4_5PL>PL	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Intron|PER1_uc010vus.1_Silent_p.4_5PL>PL	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	4_5					circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						GCCCCTTCTAGGGGGCCACTCA	0.668			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					7	17					0	0	6.4e-05	0	0
WDR16	146845	broad.mit.edu	37	17	9515626	9515626	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:9515626G>A	uc002gly.2	+	8	924	c.855G>A	c.(853-855)AAG>AAA	p.K285K	WDR16_uc002glz.2_Silent_p.K217K|WDR16_uc010coc.2_Silent_p.K295K	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	285						cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						CTCCCTAAAGGAAGATTCAGT	0.413													30	51					0	0	0.00111076	0	0
USP43	124739	broad.mit.edu	37	17	9596507	9596507	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:9596507C>T	uc010cod.2	+	9	1417	c.1417C>T	c.(1417-1419)CCG>TCG	p.P473S	USP43_uc002gma.3_Missense_Mutation_p.P162S|USP43_uc010vva.1_Missense_Mutation_p.P473S|USP43_uc010coe.2_Missense_Mutation_p.P270S	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	473					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CTATTTGTCTCCGAAGGACAG	0.517													11	20					0	0	0.00136819	0	0
MYH13	8735	broad.mit.edu	37	17	10258228	10258228	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:10258228C>T	uc002gmk.1	-	10	975	c.885G>A	c.(883-885)AAG>AAA	p.K295K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	295	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GTTCTGGCTTCTTGTTTGACA	0.343													16	34					0	0	0.000566183	0	0
MYH4	4622	broad.mit.edu	37	17	10357202	10357202	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:10357202C>T	uc002gmn.2	-	23	2803	c.2692G>A	c.(2692-2694)GAA>AAA	p.E898K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	898	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCATCTGCTTCCTAAAGGGAG	0.368													59	85					0	0	0.000781405	0	0
MYH4	4622	broad.mit.edu	37	17	10362706	10362706	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:10362706G>A	uc002gmn.2	-	15	1560	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	483	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle	p.F483V(1)		ovary(10)|skin(2)|central_nervous_system(1)	13						TCTCGTTGGTGAAGTTGATGC	0.418													29	58					0	0	0.00283554	0	0
MYH1	4619	broad.mit.edu	37	17	10400655	10400655	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:10400655C>T	uc002gmo.2	-	32	4574	c.4480G>A	c.(4480-4482)GAA>AAA	p.E1494K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1494	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity	p.E1494E(1)		ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCTAAAGATTCCTCATAAGCA	0.343													32	52					0	0	0.000692331	0	0
DNAH9	1770	broad.mit.edu	37	17	11572995	11572995	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:11572995G>A	uc002gne.2	+	17	3305	c.3237G>A	c.(3235-3237)AAG>AAA	p.K1079K	DNAH9_uc010coo.2_Silent_p.K373K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1079	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AACCCATCAAGGTGTTTGACG	0.463													40	91					0	0	0.000781405	0	0
DNAH9	1770	broad.mit.edu	37	17	11584057	11584057	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:11584057G>A	uc002gne.2	+	19	3662	c.3594G>A	c.(3592-3594)TGG>TGA	p.W1198*	DNAH9_uc010coo.2_Nonsense_Mutation_p.W492*	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1198	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTGAGAAATGGAACAACATAA	0.537													11	23					0	0	0.00136819	0	0
DNAH9	1770	broad.mit.edu	37	17	11597700	11597700	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:11597700G>A	uc002gne.2	+	22	4876	c.4808G>A	c.(4807-4809)CGG>CAG	p.R1603Q	DNAH9_uc010coo.2_Missense_Mutation_p.R897Q	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1603	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCCTTCCCGCGGTTTTACTTT	0.517													21	21					0	0	0.00047179	0	0
DNAH9	1770	broad.mit.edu	37	17	11687023	11687023	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:11687023G>A	uc002gne.2	+	40	7847	c.7779G>A	c.(7777-7779)ATG>ATA	p.M2593I	DNAH9_uc010coo.2_Missense_Mutation_p.M1887I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2593	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTTCCTGTATGAACCCCACGG	0.522													13	35					0	0	0.000308642	0	0
RICH2	9912	broad.mit.edu	37	17	12883539	12883539	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:12883539C>T	uc002gnr.3	+	19	2255	c.1928C>T	c.(1927-1929)ACC>ATC	p.T643I	RICH2_uc010vvk.1_Missense_Mutation_p.T643I|RICH2_uc010vvl.1_Missense_Mutation_p.T637I|RICH2_uc002gns.3_Missense_Mutation_p.T437I|RICH2_uc010vvm.1_Missense_Mutation_p.T637I|RICH2_uc010vvn.1_Intron	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	643					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						AGTCCTCACACCCTCCGGAAA	0.627													6	25					0	0	0.000673444	0	0
TEKT3	64518	broad.mit.edu	37	17	15212126	15212126	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:15212126C>T	uc002gon.2	-	8	1298	c.1111G>A	c.(1111-1113)GAG>AAG	p.E371K		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	371					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		TGGAAAATCTCCTGCAGGGTC	0.537													47	56					0	0	0.000781405	0	0
TRIM16	10626	broad.mit.edu	37	17	15517312	15517312	+	Missense_Mutation	SNP	C	T	T	rs113130850		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:15517312C>T	uc002gor.1	-	9	1973	c.1636G>A	c.(1636-1638)GAA>AAA	p.E546K	CDRT1_uc002gov.3_Missense_Mutation_p.E236K			O95361	TRI16_HUMAN	SubName: Full=Putative uncharacterized protein; Flags: Fragment;	Error:Variant_position_missing_in_O95361_after_alignment					histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		CTATTCATTTCGGATATACAC	0.483													42	79					0	0	0.000680045	0	0
MYO15A	51168	broad.mit.edu	37	17	18040901	18040901	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:18040901C>T	uc010vxh.1	+	15	5121	c.4783C>T	c.(4783-4785)CTG>TTG	p.L1595L		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1595	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CTGGCAGGACCTGAGCTTCAA	0.542													17	23					0	0	0.00121646	0	0
Unknown	0	broad.mit.edu	37	17	21731336	21731336	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:21731336C>T	uc002gyy.3	+	2	763	c.638C>T	c.(637-639)TCC>TTC	p.S213F						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		ACTACAACATCCAGAAGGAGT	0.542													23	45					0	0	0.00127121	0	0
TNFAIP1	7126	broad.mit.edu	37	17	26666622	26666622	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:26666622G>A	uc002hax.1	+	2	94	c.75G>A	c.(73-75)TTG>TTA	p.L25L	TNFAIP1_uc002hay.2_Silent_p.L25L|TNFAIP1_uc010waf.1_Intron	NM_021137	NP_066960	Q13829	BACD2_HUMAN	tumor necrosis factor, alpha-induced protein 1	25					apoptosis|cell migration|DNA replication|embryo development|immune response|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|endosome|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0	all_lung(13;0.000294)|Lung NSC(42;0.000964)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		GAGGAGGGTTGGGCAACAAGT	0.622													20	48					0	0	0.00152264	0	0
VTN	7448	broad.mit.edu	37	17	26696014	26696014	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:26696014C>T	uc002hbc.2	-	5	854	c.705G>A	c.(703-705)CTG>CTA	p.L235L	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	235	Hemopexin-like 2.				cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	AATCAGGGTCCAGGACACCAT	0.597													32	58					0	0	0.00111076	0	0
C17orf42	79736	broad.mit.edu	37	17	29226340	29226340	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:29226340C>T	uc002hfu.2	-	4	1000	c.930G>A	c.(928-930)AAG>AAA	p.K310K	C17orf42_uc002hfv.2_RNA	NM_024683	NP_078959	Q96QE5	TEFM_HUMAN	hypothetical protein LOC79736	310					oxidative phosphorylation|regulation of transcription, DNA-dependent|transcription from mitochondrial promoter	mitochondrial nucleoid|ribonucleoprotein complex	DNA polymerase processivity factor activity|nucleic acid binding|protein binding			ovary(1)	1		all_cancers(10;4.64e-07)|all_hematologic(16;0.014)|Acute lymphoblastic leukemia(14;0.0236)|Myeloproliferative disorder(56;0.0255)				GAGGATCCGCCTTCAGTATAG	0.408													45	64					0	0	0.000781405	0	0
NF1	4763	broad.mit.edu	37	17	29550551	29550551	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:29550551T>A	uc002hgg.2	+	16	2144	c.1811T>A	c.(1810-1812)TTG>TAG	p.L604*	NF1_uc002hgh.2_Nonsense_Mutation_p.L604*|NF1_uc010csn.1_Nonsense_Mutation_p.L464*|NF1_uc002hgi.1_5'Flank	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	604			L -> V (in NF1).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CGGGAAATATTGATCTGCAGG	0.313			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			15	29					0	0	0.000566183	0	0
UTP6	55813	broad.mit.edu	37	17	30211497	30211497	+	Missense_Mutation	SNP	G	A	A	rs146623373		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:30211497G>A	uc002hgr.2	-	10	814	c.731C>T	c.(730-732)TCG>TTG	p.S244L	UTP6_uc002hgq.2_Missense_Mutation_p.S60L|UTP6_uc010cst.2_Missense_Mutation_p.S93L|UTP6_uc010wbw.1_Missense_Mutation_p.S244L	NM_018428	NP_060898	Q9NYH9	UTP6_HUMAN	hepatocellular carcinoma-associated antigen 66	244					rRNA processing	nucleolus	binding			ovary(1)	1		all_hematologic(16;0.0149)|Ovarian(249;0.021)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|Breast(31;0.231)				CTGTGCAATCGAAAGCAGTGA	0.333													10	29					0	0	0.00185496	0	0
UNC45B	146862	broad.mit.edu	37	17	33481754	33481754	+	Silent	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:33481754A>G	uc002hja.2	+	6	730	c.633A>G	c.(631-633)CAA>CAG	p.Q211Q	UNC45B_uc002hjb.2_Silent_p.Q211Q|UNC45B_uc002hjc.2_Silent_p.Q211Q|UNC45B_uc010cto.2_Silent_p.Q211Q	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	211	ARM 2.				cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				GCGGCCACCAAGCCAGAGTAA	0.612													11	20					0	0	0.00185496	0	0
MMP28	79148	broad.mit.edu	37	17	34095316	34095316	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:34095316G>A	uc002hjy.1	-	8	1192	c.933C>T	c.(931-933)CCC>CCT	p.P311P	MMP28_uc002hjw.1_RNA|MMP28_uc002hjz.1_RNA	NM_024302	NP_077278	Q9H239	MMP28_HUMAN	matrix metalloproteinase 28 isoform 1	311					proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GCCTTCCTTGGGGGCTGTAGG	0.552													23	30					0	0	0.00278032	0	0
HNF1B	6928	broad.mit.edu	37	17	36093644	36093644	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:36093644C>A	uc002hok.3	-	3	936	c.715G>T	c.(715-717)GGG>TGG	p.G239W	HNF1B_uc010wdi.1_Missense_Mutation_p.G213W|HNF1B_uc010cve.1_Missense_Mutation_p.G47W	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	239	Homeobox; HNF1-type.				endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			GACGCGGGCCCCCATTTGAAC	0.562									Hereditary_Prostate_Cancer				140	217					2.7625e-60	9.84121e-60	0.000781405	1	0
KRT39	390792	broad.mit.edu	37	17	39114917	39114917	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:39114917C>T	uc002hvo.1	-	7	1448	c.1412G>A	c.(1411-1413)GGG>GAG	p.G471E	KRT39_uc010wfm.1_Missense_Mutation_p.G204E	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	471	Tail.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				AATGACCTTCCCATCCTTAAT	0.478													27	52					0	0	0.000720815	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39279858	39279858	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:39279858G>A	uc002hwa.2	-	1	562	c.517C>T	c.(517-519)CGA>TGA	p.R173*		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	173						keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			CAGGAGACTCGGCCACAGACT	0.358													7	11					0	0	0.000157383	0	0
GHDC	84514	broad.mit.edu	37	17	40343194	40343194	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:40343194G>A	uc002hzd.2	-	5	1408	c.924C>T	c.(922-924)CCC>CCT	p.P308P	GHDC_uc002hzg.1_Silent_p.P308P|GHDC_uc010wgg.1_Silent_p.P269P|GHDC_uc002hze.3_Silent_p.P308P|GHDC_uc002hzf.3_Silent_p.P308P	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	308						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		AGAGCCCATGGGGCTGCTCTG	0.627													31	47					0	0	0.00148497	0	0
WNK4	65266	broad.mit.edu	37	17	40939873	40939873	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:40939873G>A	uc002ibj.2	+	8	1840	c.1819G>A	c.(1819-1821)GGG>AGG	p.G607R	WNK4_uc010wgx.1_Missense_Mutation_p.G271R|WNK4_uc002ibk.1_Missense_Mutation_p.G379R|WNK4_uc010wgy.1_Intron	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	607					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		GCCCCCTGGGGGGGTGCCATC	0.647													20	24					0	0	0.00188189	0	0
AOC2	314	broad.mit.edu	37	17	40996824	40996824	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:40996824C>T	uc002ibu.2	+	1	216	c.181C>T	c.(181-183)CGA>TGA	p.R61*	AOC2_uc002ibt.2_Nonsense_Mutation_p.R61*	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	61					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		AGACCTGAGCCGAGAGGAGTT	0.657													112	151					0	0	0.000781405	0	0
HDAC5	10014	broad.mit.edu	37	17	42170530	42170530	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:42170530G>A	uc002ifd.1	-	6	782	c.571C>T	c.(571-573)CTC>TTC	p.L191F	HDAC5_uc002ife.1_Missense_Mutation_p.L191F|HDAC5_uc002iff.1_Missense_Mutation_p.L192F|HDAC5_uc010czp.1_Missense_Mutation_p.L191F|HDAC5_uc002ifh.2_Missense_Mutation_p.L191F	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	191					B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		TTCGACAAGAGGAATTCCTGG	0.617													21	56					0	0	0.000586117	0	0
ITGA2B	3674	broad.mit.edu	37	17	42458006	42458006	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:42458006G>A	uc002igt.1	-	14	1433	c.1401C>T	c.(1399-1401)ATC>ATT	p.I467I	ITGA2B_uc002igu.1_5'UTR	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	467	Extracellular (Potential).|FG-GAP 7.				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	AAGCTCCCACGATCAGGTCTA	0.602													19	36					0	0	0.000878237	0	0
GPATCH8	23131	broad.mit.edu	37	17	42475253	42475253	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:42475253G>A	uc002igw.1	-	8	4256	c.4192C>T	c.(4192-4194)CAT>TAT	p.H1398Y	GPATCH8_uc002igv.1_Missense_Mutation_p.H1320Y|GPATCH8_uc010wiz.1_Missense_Mutation_p.H1320Y	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	1398						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		GGTTGGGGATGGGGGTGAGGG	0.582													13	23					0	0	0.00185496	0	0
PLEKHM1	9842	broad.mit.edu	37	17	43552724	43552724	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:43552724G>A	uc002ija.2	-	4	835	c.665C>T	c.(664-666)TCC>TTC	p.S222F	PLEKHM1_uc010wjm.1_Missense_Mutation_p.S194F|PLEKHM1_uc002ijb.2_5'UTR|PLEKHM1_uc010wjn.1_Missense_Mutation_p.S171F	NM_014798	NP_055613	Q9Y4G2	PKHM1_HUMAN	pleckstrin homology domain containing, family M	222					intracellular signal transduction	cytoplasm	metal ion binding				0	Renal(3;0.0405)					ATGGGAAATGGAATCCAGAGA	0.557													16	29					0	0	0.000566183	0	0
CRHR1	1394	broad.mit.edu	37	17	43912069	43912069	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:43912069C>T	uc010dap.2	+	14	1539	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	CRHR1_uc010wjx.1_Missense_Mutation_p.S221F|CRHR1_uc002ijp.2_Missense_Mutation_p.P250S|CRHR1_uc002ijm.2_Missense_Mutation_p.S396F|CRHR1_uc002ijn.2_Missense_Mutation_p.S356F|CRHR1_uc010dar.2_Missense_Mutation_p.S382F|CRHR1_uc010dao.2_Missense_Mutation_p.S295F|CRHR1_uc010daq.2_Missense_Mutation_p.S221F	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	425	Cytoplasmic (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		CGTGCCATGTCCATCCCCACC	0.632													19	44					0	0	0.00229938	0	0
WNT3	7473	broad.mit.edu	37	17	44845715	44845715	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:44845715G>A	uc002ikv.2	-	4	1158	c.1039C>T	c.(1039-1041)CGC>TGC	p.R347C		NM_030753	NP_110380	P56703	WNT3_HUMAN	wingless-type MMTV integration site family,	347					canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|cellular response to retinoic acid|dorsal/ventral axis specification|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic pattern specification|head morphogenesis|hemopoietic stem cell proliferation|inner ear morphogenesis|limb bud formation|mammary gland epithelium development|mesoderm formation|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|positive regulation of cell proliferation|Spemann organizer formation at the anterior end of the primitive streak|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane fraction|membrane raft|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|signal transducer activity			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			TCGTAGATGCGAATACACTCC	0.622													13	35					0	0	0.00244969	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47076520	47076520	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:47076520C>A	uc002iom.2	+	2	559	c.225C>A	c.(223-225)CCC>CCA	p.P75P	IGF2BP1_uc010dbj.2_Silent_p.P75P	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	75	RRM 1.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						ATTCGGTGCCCAAAAAACAAA	0.488													7	48					1.12685e-05	3.97918e-05	0.000274275	1	0
IGF2BP1	10642	broad.mit.edu	37	17	47115659	47115659	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:47115659C>T	uc002iom.2	+	6	865	c.531C>T	c.(529-531)CCC>CCT	p.P177P	IGF2BP1_uc010dbj.2_Intron	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	177					CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						GGGGTCAGCCCCGCCAGGGCT	0.647													16	17					0	0	0.000566183	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47246131	47246131	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:47246131G>A	uc002ion.2	+	10	1423	c.1364G>A	c.(1363-1365)GGA>GAA	p.G455E	B4GALNT2_uc010wlt.1_Missense_Mutation_p.G369E|B4GALNT2_uc010wlu.1_Missense_Mutation_p.G395E	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	455	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			AAGAGGATGGGATTTTTCCAA	0.557													10	17					0	0	0.000978159	0	0
NGFR	4804	broad.mit.edu	37	17	47583972	47583972	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:47583972G>A	uc002ioz.3	+	3	645	c.520G>A	c.(520-522)GAG>AAG	p.E174K		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	174	Extracellular (Potential).|TNFR-Cys 4.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					CGAGGACACCGAGCGCCAGCT	0.726													14	12					0	0	0.00185496	0	0
COL1A1	1277	broad.mit.edu	37	17	48268796	48268796	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:48268796C>T	uc002iqm.2	-	32	2309	c.2183G>A	c.(2182-2184)GGA>GAA	p.G728E		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	728	Triple-helical region.		G -> R (in OI2A).		axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	ACCAGGCATTCCCTGAAGGCC	0.622			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						34	61					0	0	0.0025221	0	0
CACNA1G	8913	broad.mit.edu	37	17	48669145	48669145	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:48669145G>A	uc002irk.1	+	12	3057	c.2685G>A	c.(2683-2685)CGG>CGA	p.R895R	CACNA1G_uc002iri.1_Silent_p.R895R|CACNA1G_uc002irj.1_Silent_p.R895R|CACNA1G_uc002irl.1_Silent_p.R895R|CACNA1G_uc002irm.1_Silent_p.R895R|CACNA1G_uc002irn.1_Silent_p.R895R|CACNA1G_uc002iro.1_Silent_p.R895R|CACNA1G_uc002irp.1_Silent_p.R895R|CACNA1G_uc002irq.1_Silent_p.R895R|CACNA1G_uc002irr.1_Silent_p.R895R|CACNA1G_uc002irs.1_Silent_p.R895R|CACNA1G_uc002irt.1_Silent_p.R895R|CACNA1G_uc002irv.1_Silent_p.R895R|CACNA1G_uc002irw.1_Silent_p.R895R|CACNA1G_uc002iru.1_Silent_p.R895R|CACNA1G_uc002irx.1_Silent_p.R808R|CACNA1G_uc002iry.1_Silent_p.R808R|CACNA1G_uc002irz.1_Silent_p.R808R|CACNA1G_uc002isa.1_Silent_p.R808R|CACNA1G_uc002isb.1_Silent_p.R808R|CACNA1G_uc002isc.1_Silent_p.R808R|CACNA1G_uc002isd.1_Silent_p.R808R|CACNA1G_uc002ise.1_Silent_p.R808R|CACNA1G_uc002isf.1_Silent_p.R808R|CACNA1G_uc002isg.1_Silent_p.R808R|CACNA1G_uc002ish.1_Silent_p.R808R|CACNA1G_uc002isi.1_Silent_p.R808R	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	895	Extracellular (Potential).|II.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CCTCTGAGCGGGATGGGGACA	0.607													15	42					0	0	0.000958276	0	0
ABCC3	8714	broad.mit.edu	37	17	48750896	48750896	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:48750896G>A	uc002isl.2	+	19	2556	c.2476G>A	c.(2476-2478)GAT>AAT	p.D826N		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	826	ABC transporter 1.|Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	TGTGCTAGCTGATGGACAGGT	0.597													22	34					0	0	0.000586117	0	0
CA10	56934	broad.mit.edu	37	17	50008359	50008359	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:50008359C>T	uc002itw.3	-	3	1256	c.270G>A	c.(268-270)GGG>GGA	p.G90G	CA10_uc002itv.3_Silent_p.G96G|CA10_uc002itx.3_Silent_p.G90G|CA10_uc002ity.3_Silent_p.G90G|CA10_uc002itz.2_Silent_p.G90G	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	90					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			CCTTCCTGCCCCCCGTGTTGA	0.498													44	85					0	0	0.000781405	0	0
DGKE	8526	broad.mit.edu	37	17	54939525	54939525	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:54939525C>T	uc002iur.2	+	11	1617	c.1437C>T	c.(1435-1437)GTC>GTT	p.V479V	DGKE_uc002ius.1_Silent_p.V479V	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	479					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					TGCTGGAAGTCGTTGGAGTAT	0.368													15	54					0	0	0.000566183	0	0
OR4D2	124538	broad.mit.edu	37	17	56247718	56247718	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:56247718G>A	uc010wnp.1	+	1	702	c.702G>A	c.(700-702)AGG>AGA	p.R234R		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AGGCAAGAAGGAAGGCAGCTT	0.537													22	41					0	0	0.00188189	0	0
MKS1	54903	broad.mit.edu	37	17	56285884	56285884	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:56285884G>A	uc002ivr.1	-	12	1160	c.1085C>T	c.(1084-1086)TCC>TTC	p.S362F	MKS1_uc010wnq.1_Missense_Mutation_p.S159F|MKS1_uc002ivs.1_Missense_Mutation_p.S362F	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	362	B9.				cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						CATTGCCAGGGACTTGGTGGT	0.527													30	45					0	0	0.000814825	0	0
PRR11	55771	broad.mit.edu	37	17	57262837	57262837	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:57262837C>T	uc002ixf.1	+	4	395	c.316C>T	c.(316-318)CGT>TGT	p.R106C	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	106										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					CTTTCCATCTCGTATCTGCCA	0.338													33	66					0	0	0.000814825	0	0
TUBD1	51174	broad.mit.edu	37	17	57963527	57963527	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:57963527C>T	uc002ixw.1	-	3	515	c.237G>A	c.(235-237)AAG>AAA	p.K79K	TUBD1_uc010ddf.1_Silent_p.K79K|TUBD1_uc010ddg.1_Silent_p.K44K|TUBD1_uc010ddh.1_5'UTR|TUBD1_uc010wok.1_Silent_p.K79K|TUBD1_uc002ixx.1_Silent_p.K79K|TUBD1_uc010wol.1_Intron|TUBD1_uc010ddi.1_Intron	NM_016261	NP_057345	Q9UJT1	TBD_HUMAN	delta-tubulin	79					cell differentiation|microtubule-based movement|multicellular organismal development|protein polymerization|spermatogenesis	centriole|microtubule|nucleus	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1	all_cancers(5;3.18e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;9.34e-13)|all cancers(12;1.91e-11)			ACTGGGCAGCCTTTGACAGCA	0.423													38	57					0	0	0.00128727	0	0
DHX40P1	653645	broad.mit.edu	37	17	58079646	58079646	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:58079646A>T	uc002iyf.2	-	4	300	c.65T>A	c.(64-66)ATT>AAT	p.I22N		NR_002924				Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene, mRNA (cDNA clone IMAGE:5170263).												0						ATCCAAAATAATGACTCTGAA	0.318													51	77					0	0	0.000781405	0	0
BCAS3	54828	broad.mit.edu	37	17	58824639	58824639	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:58824639T>A	uc002iyv.3	+	6	511	c.402T>A	c.(400-402)TTT>TTA	p.F134L	BCAS3_uc010wow.1_Intron|BCAS3_uc002iyu.3_Missense_Mutation_p.F134L|BCAS3_uc002iyw.3_Missense_Mutation_p.F130L	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	134						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			CTCCACAGTTTGGTGAGTGTA	0.423													76	112					0	0	0.000781405	0	0
INTS2	57508	broad.mit.edu	37	17	59949765	59949765	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:59949765G>A	uc002izn.2	-	20	2739	c.2663C>T	c.(2662-2664)TCT>TTT	p.S888F	INTS2_uc002izm.2_Missense_Mutation_p.S880F	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	888					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						GTAGGCTTTAGATGCAAGAAG	0.388													7	24					0	0	0.000274275	0	0
MARCH10	162333	broad.mit.edu	37	17	60813350	60813350	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:60813350C>T	uc010ddr.2	-	6	2117	c.1879G>A	c.(1879-1881)GAA>AAA	p.E627K	MARCH10_uc002jag.3_Missense_Mutation_p.E627K|MARCH10_uc010dds.2_Missense_Mutation_p.E665K|MARCH10_uc002jah.2_Missense_Mutation_p.E626K|uc002jaj.1_RNA|uc002jak.2_Intron	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	627							ligase activity|zinc ion binding				0						GTTTCCTTTTCATCTGTGAAA	0.378													42	59					0	0	0.000781405	0	0
KCNH6	81033	broad.mit.edu	37	17	61613053	61613053	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:61613053G>A	uc002jay.2	+	6	1205	c.1125G>A	c.(1123-1125)TTG>TTA	p.L375L	KCNH6_uc002jax.1_Silent_p.L375L|KCNH6_uc010wpl.1_Silent_p.L252L|KCNH6_uc010wpm.1_Silent_p.L375L|KCNH6_uc002jaz.1_Silent_p.L375L	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	375	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TTGGGCTATTGAAGACAGCGC	0.602													28	39					0	0	0.00283554	0	0
TEX2	55852	broad.mit.edu	37	17	62291174	62291174	+	Missense_Mutation	SNP	G	A	A	rs76631276		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:62291174G>A	uc002jec.2	-	2	577	c.404C>T	c.(403-405)TCC>TTC	p.S135F	TEX2_uc002jed.2_Missense_Mutation_p.S135F|TEX2_uc002jee.2_Missense_Mutation_p.S135F	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	135					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		CGACCCTGGGGACACAGCCAA	0.542													30	74					0	0	0.000814825	0	0
HELZ	9931	broad.mit.edu	37	17	65119265	65119265	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:65119265G>A	uc010wqk.1	-	26	3641	c.3454C>T	c.(3454-3456)CCT>TCT	p.P1152S	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.P1151S	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					AGTACAGAAGGATTGGGCTGA	0.373													8	14					0	0	0.000442599	0	0
PITPNC1	26207	broad.mit.edu	37	17	65628352	65628352	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:65628352G>A	uc002jgc.2	+	6	807	c.460G>A	c.(460-462)GAG>AAG	p.E154K	PITPNC1_uc002jgb.2_Missense_Mutation_p.E154K	NM_012417	NP_036549	Q9UKF7	PITC1_HUMAN	phosphatidylinositol transfer protein,	154					signal transduction	cytoplasm	lipid binding|phosphatidylinositol transporter activity|protein binding			skin(1)	1	all_cancers(12;3.03e-10)		BRCA - Breast invasive adenocarcinoma(8;2.08e-08)|Colorectal(3;0.198)			CAAAGAATCTGAGGTAAGCAA	0.383													13	39					0	0	0.00244969	0	0
ABCA8	10351	broad.mit.edu	37	17	66898931	66898931	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:66898931G>A	uc002jhp.2	-	19	2746	c.2567C>T	c.(2566-2568)TCT>TTT	p.S856F	ABCA8_uc002jhq.2_Missense_Mutation_p.S896F|ABCA8_uc010wqq.1_Missense_Mutation_p.S896F|ABCA8_uc010wqr.1_Missense_Mutation_p.S835F|ABCA8_uc002jhr.2_Missense_Mutation_p.S896F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	856						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					CAAATGAGGAGAAAGTTCCCA	0.383													31	44					0	0	0.00178596	0	0
MAP2K6	5608	broad.mit.edu	37	17	67411137	67411137	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:67411137G>A	uc002jij.2	+	1	300	c.12G>A	c.(10-12)TCG>TCA	p.S4S	MAP2K6_uc002jii.2_Silent_p.S4S	NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	4					activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					TGTCTCAGTCGAAAGGTAAGA	0.433													44	79					0	0	0.000781405	0	0
KCNJ16	3773	broad.mit.edu	37	17	68128578	68128578	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:68128578C>T	uc002jin.2	+	5	836	c.350C>T	c.(349-351)TCT>TTT	p.S117F	KCNJ16_uc002jio.2_Missense_Mutation_p.S117F|KCNJ16_uc002jip.2_Missense_Mutation_p.S117F|KCNJ16_uc002jiq.2_Missense_Mutation_p.S149F	NM_018658	NP_061128	Q9NPI9	IRK16_HUMAN	potassium inwardly-rectifying channel J16	117	Extracellular (By similarity).				synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Breast(10;2.96e-09)					AACGTCCATTCTTTCACAGGG	0.453													6	30					0	0	0.00116845	0	0
CD300C	10871	broad.mit.edu	37	17	72540860	72540860	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:72540860G>A	uc002jky.1	-	2	649	c.288C>T	c.(286-288)ACC>ACT	p.T96T		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	96	Extracellular (Potential).|Ig-like V-type.				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						GATTCTCCAGGGTCACTGTGA	0.547													31	34					0	0	0.001512	0	0
CD300LF	146722	broad.mit.edu	37	17	72692343	72692343	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:72692343G>A	uc002jlg.2	-	5	676	c.573C>T	c.(571-573)TCC>TCT	p.S191S	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|CD300LF_uc002jlf.2_Silent_p.S194S|CD300LF_uc010dfw.2_Intron|CD300LF_uc002jlh.2_Missense_Mutation_p.P207S|CD300LF_uc002jli.2_Missense_Mutation_p.P157S|CD300LF_uc010wra.1_Silent_p.S206S|CD300LF_uc002jlj.1_Intron	NM_139018	NP_620587	Q8TDQ1	CLM1_HUMAN	NK inhibitory receptor precursor	191	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			upper_aerodigestive_tract(1)	1						CCTGCTCTGGGGACATCCCGG	0.488													36	69					0	0	0.00170553	0	0
LLGL2	3993	broad.mit.edu	37	17	73567118	73567118	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:73567118G>A	uc002joh.2	+	17	2267	c.2113G>A	c.(2113-2115)GCA>ACA	p.A705T	LLGL2_uc002joi.2_Missense_Mutation_p.A705T|LLGL2_uc010dgg.1_Missense_Mutation_p.A705T|LLGL2_uc002joj.2_Missense_Mutation_p.A694T|LLGL2_uc010wsd.1_Missense_Mutation_p.A332T	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	705					cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			GGCTCGCTCGGCAGAGGACTC	0.652													51	88					0	0	0.000781405	0	0
EVPL	2125	broad.mit.edu	37	17	74004096	74004096	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:74004096C>T	uc002jqi.2	-	22	5418	c.5190G>A	c.(5188-5190)GGG>GGA	p.G1730G	EVPL_uc010wss.1_Silent_p.G1752G|EVPL_uc010wst.1_Silent_p.G1200G	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1730	Globular 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCCCACAGGGCCCCGAGGTGG	0.642													11	31					0	0	0.000978159	0	0
TNRC6C	57690	broad.mit.edu	37	17	76046866	76046866	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:76046866C>T	uc002jud.2	+	4	2323	c.1723C>T	c.(1723-1725)CCA>TCA	p.P575S	TNRC6C_uc002juf.2_Missense_Mutation_p.P575S|TNRC6C_uc002jue.2_Missense_Mutation_p.P575S	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	575	Sufficient for interaction with argonaute family proteins.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GGGTGAGCCTCCAAAGCCCAA	0.557													13	27					0	0	0.00185496	0	0
CYTH1	9267	broad.mit.edu	37	17	76694375	76694376	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:76694375_76694376GG>AA	uc002jvw.2	-	9	857_858	c.786_787CC>TT	c.(784-789)GACCGA>GATTGA	p.R263*	CYTH1_uc010wtw.1_Nonsense_Mutation_p.R204*|CYTH1_uc010wtx.1_Nonsense_Mutation_p.R204*	NM_017456	NP_059430	Q15438	CYH1_HUMAN	cytohesin 1 isoform 2	263	PH.				regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						CAGCCTTCTCGGTCTGGATTGA	0.406													65	93					0	0	6.4e-05	0	0
CBX8	57332	broad.mit.edu	37	17	77768609	77768609	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:77768609G>A	uc002jxd.1	-	5	1088	c.995C>T	c.(994-996)TCC>TTC	p.S332F		NM_020649	NP_065700	Q9HC52	CBX8_HUMAN	chromobox homolog 8	332					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex	methylated histone residue binding				0			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			GGCGATGAGGGAGGGCCTTCC	0.687													13	25					0	0	0.00185496	0	0
FASN	2194	broad.mit.edu	37	17	80046119	80046119	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr17:80046119G>A	uc002kdu.2	-	17	2775	c.2658C>T	c.(2656-2658)TTC>TTT	p.F886F	FASN_uc002kdw.1_Silent_p.F102F	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	886					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	CAGTGGCGGGGAAGAGGACGC	0.672													12	40					0	0	0.000308642	0	0
METTL4	64863	broad.mit.edu	37	18	2539090	2539090	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:2539090C>T	uc002klh.3	-	9	2108	c.1328G>A	c.(1327-1329)CGA>CAA	p.R443Q	METTL4_uc010dkj.2_3'UTR	NM_022840	NP_073751	Q8N3J2	METL4_HUMAN	methyltransferase like 4	443					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		methyltransferase activity|nucleic acid binding			kidney(1)|skin(1)	2						CTGTAAATTTCGAGCAAACAA	0.363													31	76					0	0	0.000692331	0	0
METTL4	64863	broad.mit.edu	37	18	2544257	2544257	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:2544257G>A	uc002klh.3	-	8	1990	c.1210C>T	c.(1210-1212)CCA>TCA	p.P404S	METTL4_uc010dkj.2_Intron	NM_022840	NP_073751	Q8N3J2	METL4_HUMAN	methyltransferase like 4	404					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		methyltransferase activity|nucleic acid binding			kidney(1)|skin(1)	2						TTGTGGTCTGGAATGGGGAGC	0.348													8	56					0	0	0.000442599	0	0
SMCHD1	23347	broad.mit.edu	37	18	2763772	2763772	+	Silent	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:2763772T>A	uc002klm.3	+	37	4893	c.4704T>A	c.(4702-4704)GGT>GGA	p.G1568G	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1568					chromosome organization		ATP binding				0						TCGTGAATGGTTCGGCTGAAA	0.333													35	70					0	0	0.00222228	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891059	2891059	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:2891059G>A	uc002kln.2	+	4	1093	c.934G>A	c.(934-936)GAA>AAA	p.E312K		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	312	Potential.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		GACAACCAACGAACTCTACCA	0.547													18	125					0	0	0.00188189	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6859837	6859837	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:6859837C>T	uc010wzi.1	+	4	374	c.136C>T	c.(136-138)CTG>TTG	p.L46L	ARHGAP28_uc002knc.2_Silent_p.L171L|ARHGAP28_uc002knd.2_Silent_p.L64L|ARHGAP28_uc002kne.2_Silent_p.L64L|ARHGAP28_uc002knf.2_Silent_p.L55L			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	46					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				CAGTACTACCCTGTCTGACGC	0.428													27	175					0	0	0.001512	0	0
LAMA1	284217	broad.mit.edu	37	18	6986233	6986233	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:6986233A>C	uc002knm.2	-	37	5376	c.5282T>G	c.(5281-5283)CTA>CGA	p.L1761R	LAMA1_uc010wzj.1_Missense_Mutation_p.L1237R	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1761	Domain II and I.|Potential.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCCGCCTTTAGTTCATTGTT	0.468													27	139					0	0	0.0024448	0	0
LAMA1	284217	broad.mit.edu	37	18	7002281	7002281	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:7002281G>A	uc002knm.2	-	30	4458	c.4364C>T	c.(4363-4365)CCT>CTT	p.P1455L	LAMA1_uc010wzj.1_Missense_Mutation_p.P931L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1455	Laminin EGF-like 16.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGGCTGTGAGGACAGGCACA	0.577													17	38					0	0	0.000422831	0	0
LAMA1	284217	broad.mit.edu	37	18	7037703	7037703	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:7037703C>T	uc002knm.2	-	12	1705	c.1611G>A	c.(1609-1611)AGG>AGA	p.R537R	LAMA1_uc010wzj.1_Silent_p.R13R	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	537	Laminin IV type A 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACGGGATCTTCCTGGGACTGA	0.483													16	33					0	0	0.000958276	0	0
PPP4R1	9989	broad.mit.edu	37	18	9557371	9557371	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:9557371G>A	uc002koe.1	-	15	2156	c.2038C>T	c.(2038-2040)CGA>TGA	p.R680*	PPP4R1_uc002kof.2_Nonsense_Mutation_p.R97*|PPP4R1_uc010wzo.1_Nonsense_Mutation_p.R526*|PPP4R1_uc002kod.1_Nonsense_Mutation_p.R663*	NM_001042388	NP_001035847	Q8TF05	PP4R1_HUMAN	protein phosphatase 4, regulatory subunit 1	680					protein phosphorylation|signal transduction	protein phosphatase 4 complex	protein binding|protein phosphatase type 4 regulator activity			skin(1)	1						AGAGTTCGTCGAACTTTCCAC	0.358													32	84					0	0	0.001512	0	0
CEP76	79959	broad.mit.edu	37	18	12699154	12699154	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:12699154C>T	uc002kri.2	-	4	500	c.344G>A	c.(343-345)GGA>GAA	p.G115E	PSMG2_uc002krg.2_Intron|CEP76_uc002krh.3_5'UTR|CEP76_uc010wzz.1_Intron|CEP76_uc010xaa.1_5'UTR|CEP76_uc010xab.1_Nonsense_Mutation_p.W102*	NM_024899	NP_079175	Q8TAP6	CEP76_HUMAN	centrosomal protein 76kDa	115					G2/M transition of mitotic cell cycle|regulation of centriole replication	centriole|cytosol	protein binding				0						GAAAGCTTTTCCACCCAAAAC	0.363													19	121					0	0	0.00278032	0	0
MC5R	4161	broad.mit.edu	37	18	13826292	13826292	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:13826292C>T	uc010xaf.1	+	1	528	c.528C>T	c.(526-528)GTC>GTT	p.V176V		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	176	Helical; Name=4; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						GCGGCATTGTCTTCATCCTGT	0.562													78	420					0	0	0.000781405	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997320	19997320	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:19997320G>A	uc002ktv.1	-	1	559	c.455C>T	c.(454-456)TCC>TTC	p.S152F		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	152	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TGATTTGAGGGATTTTGACTC	0.353													59	139					0	0	0.000781405	0	0
LAMA3	3909	broad.mit.edu	37	18	21355756	21355756	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:21355756C>T	uc002kuq.2	+	10	1360	c.1274C>T	c.(1273-1275)CCC>CTC	p.P425L	LAMA3_uc010dlv.1_Missense_Mutation_p.P425L|LAMA3_uc002kur.2_Missense_Mutation_p.P425L	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	425	Domain V.|Laminin EGF-like 2.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTTCTCTTAGCCTGCAGCTGT	0.493													10	22					0	0	0.00185496	0	0
DSC2	1824	broad.mit.edu	37	18	28671000	28671000	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:28671000G>A	uc002kwl.3	-	4	919	c.465C>T	c.(463-465)TTC>TTT	p.F155F	DSC2_uc002kwk.3_Silent_p.F155F	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	155	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			CCTGTTGAAGGAAAAGTGGAA	0.398													6	27					0	0	0.00198382	0	0
DSC1	1823	broad.mit.edu	37	18	28711568	28711568	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:28711568G>A	uc002kwn.2	-	15	2738	c.2476C>T	c.(2476-2478)CGG>TGG	p.R826W	DSC1_uc002kwm.2_Missense_Mutation_p.R826W|uc002kwo.1_RNA	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	826	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TCGCCAAGCCGAGGTTGGGTG	0.458													6	51					0	0	0.00116845	0	0
DSC1	1823	broad.mit.edu	37	18	28739444	28739444	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:28739444G>A	uc002kwn.2	-	2	374	c.112C>T	c.(112-114)CCT>TCT	p.P38S	DSC1_uc002kwm.2_Missense_Mutation_p.P38S	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	38					homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			AGATGAGAAGGAACTCGAAGA	0.338													8	106					0	0	0.000274275	0	0
DSG1	1828	broad.mit.edu	37	18	28926140	28926140	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:28926140C>T	uc002kwp.2	+	14	2291	c.2079C>T	c.(2077-2079)TTC>TTT	p.F693F	DSG1_uc010xbp.1_Silent_p.F52F	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	693	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			ATATGAATTTCATGGAAAGCT	0.418													10	24					0	0	0.00185496	0	0
DSG4	147409	broad.mit.edu	37	18	28968349	28968349	+	Missense_Mutation	SNP	C	T	T	rs36040686	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:28968349C>T	uc002kwq.2	+	4	371	c.236C>T	c.(235-237)TCG>TTG	p.S79L	DSG4_uc002kwr.2_Missense_Mutation_p.S79L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	79	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GACTGCGAATCGAACCAGAAG	0.353													6	17					0	0	0.00116845	0	0
DSG4	147409	broad.mit.edu	37	18	28991347	28991347	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:28991347G>A	uc002kwq.2	+	15	2426	c.2291G>A	c.(2290-2292)GGA>GAA	p.G764E	DSG4_uc002kwr.2_Missense_Mutation_p.G783E	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	764	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCTACCATGGGAACCCTGCGG	0.443													5	40					0	0	0.000602214	0	0
DSG4	147409	broad.mit.edu	37	18	28992824	28992824	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:28992824C>T	uc002kwq.2	+	16	2524	c.2389C>T	c.(2389-2391)CGA>TGA	p.R797*	DSG4_uc002kwr.2_Nonsense_Mutation_p.R816*	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	797	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGATGAAGGTCGACCAGCCAA	0.398													19	60					0	0	0.00229938	0	0
DSG3	1830	broad.mit.edu	37	18	29038468	29038468	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:29038468G>A	uc002kws.2	+	4	386	c.277G>A	c.(277-279)GAT>AAT	p.D93N		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	93	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGTGGGAATCGATCAGCCGCC	0.443													6	48					0	0	0.00116845	0	0
DSG3	1830	broad.mit.edu	37	18	29039878	29039878	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:29039878C>T	uc002kws.2	+	6	697	c.588C>T	c.(586-588)TTC>TTT	p.F196F		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	196	Extracellular (Potential).|Cadherin 2.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AAATTGCCTTCAAAATTGTCT	0.428													13	25					0	0	0.00185496	0	0
KIAA1012	22878	broad.mit.edu	37	18	29451033	29451033	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:29451033C>T	uc002kxc.3	-	15	2477	c.2113G>A	c.(2113-2115)GAA>AAA	p.E705K	KIAA1012_uc002kxb.3_Missense_Mutation_p.E651K|KIAA1012_uc002kxd.3_RNA	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	705					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						TGAGAGGATTCAGAATCATAT	0.358													8	23					0	0	0.000673444	0	0
MEP1B	4225	broad.mit.edu	37	18	29797058	29797058	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:29797058C>T	uc002kxj.3	+	13	1911	c.1864C>T	c.(1864-1866)CGA>TGA	p.R622*		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	622	Extracellular (Potential).|EGF-like.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						CTGCACTGTTCGAGATGGCAA	0.398													19	62					0	0	0.00229938	0	0
ASXL3	80816	broad.mit.edu	37	18	31324134	31324134	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:31324134C>T	uc010dmg.1	+	12	4377	c.4322C>T	c.(4321-4323)TCA>TTA	p.S1441L	ASXL3_uc002kxq.2_Missense_Mutation_p.S1148L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1441					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GACAAAAATTCAGGGCCTCGA	0.468											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	96					0	0	0.00148497	0	0
HAUS1	115106	broad.mit.edu	37	18	43698273	43698273	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:43698273C>T	uc002lbu.2	+	3	412	c.332C>T	c.(331-333)TCG>TTG	p.S111L	HAUS1_uc002lbv.2_Missense_Mutation_p.S35L	NM_138443	NP_612452	Q96CS2	HAUS1_HUMAN	coiled-coil domain containing 5	111					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole				ovary(1)	1						AAGGATACCTCGCTAGCTAGG	0.398													18	58					0	0	0.00188189	0	0
RNF165	494470	broad.mit.edu	37	18	44027629	44027629	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:44027629C>T	uc002lcb.1	+	4	640	c.589C>T	c.(589-591)CCC>TCC	p.P197S	RNF165_uc002lby.1_Missense_Mutation_p.P130S|RNF165_uc010dnn.1_5'UTR	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	197							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		GCACCACTTTCCCAGAAACTC	0.567													31	84					0	0	0.000953801	0	0
PIAS2	9063	broad.mit.edu	37	18	44424774	44424774	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:44424774C>A	uc002lck.2	-	7	1048	c.890G>T	c.(889-891)CGG>CTG	p.R297L	PIAS2_uc010dnp.2_5'UTR|PIAS2_uc002lcl.2_Missense_Mutation_p.R297L|PIAS2_uc010xda.1_5'UTR|PIAS2_uc002lcm.2_Missense_Mutation_p.R297L|PIAS2_uc002lcn.1_Missense_Mutation_p.R301L	NM_004671	NP_004662	O75928	PIAS2_HUMAN	protein inhibitor of activated STAT X isoform	297	PINIT.				androgen receptor signaling pathway|negative regulation of androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|PML body	androgen receptor binding|DNA binding|protein binding|SUMO ligase activity|transcription coactivator activity|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						TGTAAGCTGCCGTACAAGATA	0.303													6	73					0.00198382	0.00694728	0.00198382	1	0
TCEB3C	162699	broad.mit.edu	37	18	44554605	44554605	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:44554605G>A	uc010xdb.1	-	1	1845	c.1609C>T	c.(1609-1611)CGA>TGA	p.R537*	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	537					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TTGTAGTCTCGAATTGCCTTG	0.418													14	510					0	0	0.000878237	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559713	44559713	+	Missense_Mutation	SNP	C	T	T	rs143582553		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:44559713C>T	uc002lcr.1	-	1	2276	c.1923G>A	c.(1921-1923)ATG>ATA	p.M641I	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	641	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TGAAACAGATCATCTTTGCCT	0.537													18	172					0	0	0.00188189	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560950	44560950	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:44560950G>A	uc002lcr.1	-	1	1039	c.686C>T	c.(685-687)TCG>TTG	p.S229L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	229					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTGGCGAGACGATTTGTGCCC	0.617													10	20					0	0	0.000673444	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560960	44560961	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:44560960_44560961CC>TT	uc002lcr.1	-	1	1028_1029	c.675_676GG>AA	c.(673-678)AAGGGG>AAAAGG	p.G226R	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	226					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GATTTGTGCCCCTTGCTGTGGC	0.619													7	22					0	0	6.4e-05	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567391	45567391	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:45567391C>T	uc002lda.2	-	1	104	c.88G>A	c.(88-90)GAT>AAT	p.D30N	ZBTB7C_uc002ldb.2_Missense_Mutation_p.D30N|ZBTB7C_uc010dnu.2_Missense_Mutation_p.D39N|ZBTB7C_uc010dnv.2_Missense_Mutation_p.D52N|ZBTB7C_uc010dnw.2_Missense_Mutation_p.D30N|ZBTB7C_uc010dnx.1_Missense_Mutation_p.D30N|ZBTB7C_uc010dny.1_Missense_Mutation_p.D30N|ZBTB7C_uc010dnz.1_Missense_Mutation_p.D52N|ZBTB7C_uc010dob.1_Missense_Mutation_p.D30N|ZBTB7C_uc010doc.1_Missense_Mutation_p.D39N|ZBTB7C_uc010dod.1_Missense_Mutation_p.D52N|ZBTB7C_uc010doe.1_Missense_Mutation_p.D30N|ZBTB7C_uc010dof.1_Missense_Mutation_p.D30N|ZBTB7C_uc010dog.1_Missense_Mutation_p.D30N|ZBTB7C_uc010doh.1_Missense_Mutation_p.D39N|ZBTB7C_uc010doi.1_Missense_Mutation_p.D30N|ZBTB7C_uc010doj.1_Missense_Mutation_p.D39N|ZBTB7C_uc010dok.1_Missense_Mutation_p.D79N|ZBTB7C_uc010dol.1_Missense_Mutation_p.D39N|ZBTB7C_uc010doa.1_Missense_Mutation_p.D52N|ZBTB7C_uc010don.1_Missense_Mutation_p.D38N|ZBTB7C_uc010doo.1_Missense_Mutation_p.D30N|ZBTB7C_uc010dop.1_Missense_Mutation_p.D30N|ZBTB7C_uc010doq.1_Missense_Mutation_p.D39N|ZBTB7C_uc010dor.1_Missense_Mutation_p.D52N|ZBTB7C_uc010dos.1_Missense_Mutation_p.D30N|ZBTB7C_uc010dot.1_Missense_Mutation_p.D30N|ZBTB7C_uc010dou.1_Missense_Mutation_p.D39N|ZBTB7C_uc010dom.1_Missense_Mutation_p.D39N	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	30						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGCAGGCCATCGTGCCGTTGC	0.567													7	37					0	0	0.000157383	0	0
MAPK4	5596	broad.mit.edu	37	18	48252373	48252373	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:48252373G>A	uc002lev.2	+	5	1895	c.895G>A	c.(895-897)GAT>AAT	p.D299N	MAPK4_uc010xdm.1_Missense_Mutation_p.D88N|MAPK4_uc010doz.2_Intron	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	299	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		TAACCCCATGGATCGCCTAAC	0.552													8	80					0	0	0.000274275	0	0
DCC	1630	broad.mit.edu	37	18	50918165	50918165	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:50918165G>A	uc002lfe.1	+	17	3183	c.2596G>A	c.(2596-2598)GAC>AAC	p.D866N	DCC_uc010xdr.1_Missense_Mutation_p.D694N|DCC_uc010dpf.1_Missense_Mutation_p.D501N	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	866	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CAGCTGGGCAGACAACTCTGT	0.537													7	76					0	0	0.000157383	0	0
DCC	1630	broad.mit.edu	37	18	51025846	51025846	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:51025846G>A	uc002lfe.1	+	27	4664	c.4077G>A	c.(4075-4077)CCG>CCA	p.P1359P	DCC_uc010dpf.1_Silent_p.P992P	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1359	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CAATAGAACCGAAAGTCCCTT	0.448													17	67					0	0	0.00188189	0	0
ATP8B1	5205	broad.mit.edu	37	18	55355657	55355657	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:55355657T>C	uc002lgw.2	-	12	1303	c.1303A>G	c.(1303-1305)AAA>GAA	p.K435E	uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	435	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				GTTCTAGCTTTTGCGGGTGTG	0.443									Byler_disease				37	69					0	0	0.00195071	0	0
ALPK2	115701	broad.mit.edu	37	18	56246303	56246303	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:56246303C>T	uc002lhj.3	-	4	1919	c.1705G>A	c.(1705-1707)GAA>AAA	p.E569K		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	569							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TCAGCAGATTCTTTGGCAGAG	0.522											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	35					0	0	0.00047179	0	0
SERPINB12	89777	broad.mit.edu	37	18	61226926	61226926	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:61226926G>A	uc010xen.1	+	3	359	c.359G>A	c.(358-360)GGA>GAA	p.G120E	SERPINB12_uc010xeo.1_Missense_Mutation_p.G140E	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	120					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						AGGCTTTATGGAGAGCAGGAA	0.448													10	35					0	0	0.00136819	0	0
SERPINB12	89777	broad.mit.edu	37	18	61233848	61233848	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:61233848G>A	uc010xen.1	+	7	822	c.822G>A	c.(820-822)AGG>AGA	p.R274R	SERPINB12_uc010xeo.1_Silent_p.R294R	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	274					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						AGCTTGAAAGGAAAATCACCT	0.463													34	87					0	0	0.000814825	0	0
SERPINB4	6318	broad.mit.edu	37	18	61309039	61309039	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:61309039C>T	uc002ljf.2	-	4	392	c.306G>A	c.(304-306)AAG>AAA	p.K102K	SERPINB4_uc002lje.2_Silent_p.K102K|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	102					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGTTGGCGATCTTCAGCTCAT	0.403													8	29					0	0	0.000442599	0	0
SERPINB7	8710	broad.mit.edu	37	18	61468235	61468235	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:61468235G>A	uc002ljl.2	+	7	829	c.733G>A	c.(733-735)GAC>AAC	p.D245N	SERPINB7_uc002ljm.2_Missense_Mutation_p.D245N|SERPINB7_uc010xet.1_Missense_Mutation_p.D228N|SERPINB7_uc010dqg.2_Missense_Mutation_p.D245N	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	245					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				GCCTGAGAATGACCTCTCTGA	0.373													18	50					0	0	0.00188189	0	0
SERPINB2	5055	broad.mit.edu	37	18	61569055	61569055	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:61569055G>A	uc010xeu.1	+	7	950	c.617G>A	c.(616-618)GGA>GAA	p.G206E	SERPINB2_uc002ljo.2_Missense_Mutation_p.G206E|SERPINB2_uc010dqh.2_Missense_Mutation_p.G136E|SERPINB2_uc002ljp.1_Missense_Mutation_p.G11E|SERPINB2_uc002ljq.1_Missense_Mutation_p.G11E	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	206					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TACTTCAAAGGAAAGTGGAAA	0.383													13	31					0	0	0.000308642	0	0
DSEL	92126	broad.mit.edu	37	18	65181576	65181576	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:65181576G>A	uc002lke.1	-	2	1524	c.300C>T	c.(298-300)ATC>ATT	p.I100I		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	90						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CTGCACTTCTGATAGCTCTAA	0.398													9	88					0	0	0.000673444	0	0
NETO1	81832	broad.mit.edu	37	18	70461626	70461626	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:70461626C>T	uc002lkw.2	-	5	767	c.483G>A	c.(481-483)AAG>AAA	p.K161K	NETO1_uc002lkx.1_Silent_p.K160K|NETO1_uc002lky.1_Silent_p.K161K	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	161	Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CTCCAAGGTCCTTAAAGTCAG	0.294													11	145					0	0	0.000978159	0	0
NETO1	81832	broad.mit.edu	37	18	70526092	70526092	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:70526092C>T	uc002lkw.2	-	4	722	c.438G>A	c.(436-438)ATG>ATA	p.M146I	NETO1_uc002lkx.1_Missense_Mutation_p.M145I|NETO1_uc002lky.1_Missense_Mutation_p.M146I|NETO1_uc002lkz.2_Missense_Mutation_p.M145I	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	146	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		CTGAAAATCCCATAGATTCCA	0.323													13	41					0	0	0.00244969	0	0
FBXO15	201456	broad.mit.edu	37	18	71797839	71797839	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:71797839C>T	uc002lle.2	-	4	495	c.159G>A	c.(157-159)TGG>TGA	p.W53*	FBXO15_uc002llf.2_Nonsense_Mutation_p.W129*	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	53										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		AATTAAATTTCCAATTTGATC	0.348													5	45					0	0	0.000602214	0	0
CNDP2	55748	broad.mit.edu	37	18	72183516	72183516	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:72183516C>T	uc002llm.1	+	9	1119	c.957C>T	c.(955-957)ATC>ATT	p.I319I	CNDP2_uc002lln.1_Silent_p.I235I|CNDP2_uc010dqs.2_Intron	NM_018235	NP_060705	Q96KP4	CNDP2_HUMAN	CNDP dipeptidase 2	319						cytoplasm	carboxypeptidase activity|metal ion binding|metallopeptidase activity|protein binding|tripeptidase activity			ovary(2)|skin(1)	3		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.22)		TCCATGGCATCGAAGGCGCCT	0.572													34	104					0	0	0.00170553	0	0
ZNF407	55628	broad.mit.edu	37	18	72775756	72775756	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:72775756G>A	uc002llw.2	+	8	6136	c.6079G>A	c.(6079-6081)GAG>AAG	p.E2027K		NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	2027					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GCCCGGGCAGGAGGTCTCCCA	0.692													11	36					0	0	0.00244969	0	0
ZNF236	7776	broad.mit.edu	37	18	74587487	74587487	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:74587487T>C	uc002lmi.2	+	6	899	c.701T>C	c.(700-702)TTT>TCT	p.F234S	ZNF236_uc002lmj.2_RNA|ZNF236_uc002lmk.1_Missense_Mutation_p.F234S	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	234	C2H2-type 7.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		GGAAAGGCTTTTAACCAGAAG	0.458											OREG0025069	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	68					0	0	0.000566183	0	0
SALL3	27164	broad.mit.edu	37	18	76753443	76753443	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr18:76753443C>T	uc002lmt.2	+	2	1452	c.1452C>T	c.(1450-1452)GTC>GTT	p.V484V	SALL3_uc010dra.2_Silent_p.V91V	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	484					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CTTACCCGGTCCCCGAGTACC	0.627													7	19					0	0	0.000673444	0	0
MIER2	54531	broad.mit.edu	37	19	307313	307313	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:307313G>A	uc002lok.1	-	13	1431	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	474					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGGCAGGGCGAAGTCCACGG	0.687													10	17					0	0	0.00136819	0	0
ARID3A	1820	broad.mit.edu	37	19	965058	965058	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:965058C>T	uc002lql.2	+	6	1466	c.1176C>T	c.(1174-1176)ACC>ACT	p.T392T		NM_005224	NP_005215	Q99856	ARI3A_HUMAN	AT rich interactive domain 3A (BRIGHT- like)	392						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCCATCACCCCCGCCCCTA	0.428													13	35					0	0	0.00185496	0	0
GRIN3B	116444	broad.mit.edu	37	19	1003133	1003133	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:1003133C>T	uc002lqo.1	+	2	431	c.431C>T	c.(430-432)CCA>CTA	p.P144L		NM_138690	NP_619635	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic,	144	Extracellular (Potential).				ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity				0		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	TCCCAGAACCCATTCCACCTG	0.667													6	4					0	0	0.00198382	0	0
ABCA7	10347	broad.mit.edu	37	19	1051955	1051955	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:1051955C>T	uc002lqw.3	+	22	3208	c.2977C>T	c.(2977-2979)CTC>TTC	p.L993F	ABCA7_uc010dsb.1_Missense_Mutation_p.L855F	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	993	ABC transporter 1.				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACGCTGATCCTCTCCACCCA	0.488													23	83					0	0	0.000878237	0	0
NCLN	56926	broad.mit.edu	37	19	3192620	3192621	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:3192620_3192621CC>TT	uc002lxi.2	+	2	491_492	c.337_338CC>TT	c.(337-339)CCC>TTC	p.P113F	NCLN_uc002lxh.1_RNA	NM_020170	NP_064555	Q969V3	NCLN_HUMAN	nicalin precursor	113	Lumenal (Potential).				proteolysis|regulation of signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	peptidase activity|protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.83e-113)|Epithelial(107;1.65e-111)|all cancers(105;1.53e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00139)|STAD - Stomach adenocarcinoma(1328;0.18)		CATCATCCTGCCCAGGGCCATG	0.703													13	41					0	0	6.4e-05	0	0
ZFR2	23217	broad.mit.edu	37	19	3823267	3823267	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:3823267C>T	uc002lyw.2	-	8	1360	c.1348G>A	c.(1348-1350)GTG>ATG	p.V450M	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	450						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		TCCGGGCCCACCGGCTGCGCA	0.622													45	195					0	0	0.000781405	0	0
ZFR2	23217	broad.mit.edu	37	19	3831710	3831710	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:3831710G>A	uc002lyw.2	-	4	558	c.546C>T	c.(544-546)ATC>ATT	p.I182I	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	182						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		AGGAGGTCACGATGGAAGCTG	0.662													11	23					0	0	0.00185496	0	0
DAPK3	1613	broad.mit.edu	37	19	3964824	3964824	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:3964824G>A	uc002lzc.1	-	2	321	c.228C>T	c.(226-228)ATC>ATT	p.I76I	DAPK3_uc002lzb.1_5'Flank|DAPK3_uc002lzd.1_Silent_p.I76I	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	76	Protein kinase.				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAGGGTGATGATGTTGGGGT	0.617													20	51					0	0	0.00188189	0	0
CREB3L3	84699	broad.mit.edu	37	19	4164509	4164509	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:4164509C>T	uc002lzl.2	+	5	702	c.586C>T	c.(586-588)CAC>TAC	p.H196Y	CREB3L3_uc002lzm.2_Missense_Mutation_p.H186Y|CREB3L3_uc010xib.1_Missense_Mutation_p.H185Y|CREB3L3_uc010xic.1_Missense_Mutation_p.H187Y	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	196	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAACAGCATCACCTGGGGGC	0.552													48	146					0	0	0.000781405	0	0
PLIN5	440503	broad.mit.edu	37	19	4523678	4523678	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:4523678G>A	uc002mas.2	-	8	1307	c.1254C>T	c.(1252-1254)GCC>GCT	p.A418A		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	418						lipid particle					0						CTGCCTCCCAGGCTCTCTGCT	0.716											OREG0025168	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	150					0	0	0.000781405	0	0
PLIN5	440503	broad.mit.edu	37	19	4523691	4523691	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:4523691G>A	uc002mas.2	-	8	1294	c.1241C>T	c.(1240-1242)GCC>GTC	p.A414V		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	414						lipid particle					0						TCTCTGCTGGGCCGGCCAGTC	0.701													45	124					0	0	0.000781405	0	0
LRG1	116844	broad.mit.edu	37	19	4538062	4538062	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:4538062G>A	uc002mau.2	-	2	945	c.934C>T	c.(934-936)CGT>TGT	p.R312C	PLIN5_uc002mas.2_5'Flank|PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	312	LRRCT.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		TGAAGCCAACGATAGAGGTCG	0.592													23	70					0	0	0.00106085	0	0
ARRDC5	645432	broad.mit.edu	37	19	4891160	4891160	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:4891160C>T	uc002mbm.2	-	3	927	c.927G>A	c.(925-927)AAG>AAA	p.K309K		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	309					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		GAACTTTGGCCTTGAGGCTGG	0.592													63	184					0	0	0.000781405	0	0
UHRF1	29128	broad.mit.edu	37	19	4944405	4944405	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:4944405C>T	uc002mbo.2	+	9	1416	c.1248C>T	c.(1246-1248)AAC>AAT	p.N416N	UHRF1_uc010xik.1_RNA|UHRF1_uc010duf.2_RNA|UHRF1_uc002mbp.2_Silent_p.N429N	NM_001048201	NP_001041666	Q96T88	UHRF1_HUMAN	ubiquitin-like with PHD and ring finger domains	416	Methyl-CpG binding and interaction with HDAC1.				cell cycle|cell proliferation|DNA repair|regulation of transcription from RNA polymerase II promoter	nucleus	acid-amino acid ligase activity|methyl-CpG binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0276)		TCCCGTCCAACCACTACGGAC	0.667													29	58					0	0	0.00209593	0	0
FUT3	2525	broad.mit.edu	37	19	5844648	5844648	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:5844648C>A	uc002mdk.2	-	2	300	c.203G>T	c.(202-204)TGG>TTG	p.W68L	FUT3_uc002mdm.2_Missense_Mutation_p.W68L|FUT3_uc002mdj.2_Missense_Mutation_p.W68L|FUT3_uc002mdl.2_Missense_Mutation_p.W68L|uc002mdn.2_5'Flank	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	68	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						AGGCCATGTCCGTAGCAGGAT	0.647													6	108					0.00198382	0.00694728	0.00198382	1	0
SLC25A23	79085	broad.mit.edu	37	19	6454349	6454349	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:6454349G>A	uc002mex.1	-	6	922	c.780C>T	c.(778-780)TTC>TTT	p.F260F	SLC25A23_uc002mev.2_RNA|SLC25A23_uc010xjd.1_Silent_p.F77F	NM_024103	NP_077008	Q9BV35	SCMC3_HUMAN	solute carrier family 25, member 23	260	Solcar 1.|Helical; Name=2; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding	p.F260L(1)		ovary(1)|pancreas(1)	2						CATAGGCCATGAACTTGATAG	0.547													50	147					0	0	0.000781405	0	0
TUBB4	10382	broad.mit.edu	37	19	6495666	6495667	+	Nonsense_Mutation	DNP	GG	AC	AC			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:6495666_6495667GG>AC	uc002mfg.1	-	4	950_951	c.843_844CC>GT	c.(841-846)TACCGG>TAGTGG	p.281_282YR>*W	TUBB4_uc002mff.1_Nonsense_Mutation_p.209_210YR>*W|MIR220B_hsa-mir-220b|MI0005529_5'Flank	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	281_282					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		GTCAGGGCCCGGTACTGCTGGC	0.678													21	85					0	0	6.4e-05	0	0
TNFSF14	8740	broad.mit.edu	37	19	6667457	6667457	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:6667457C>T	uc002mfk.1	-	3	605	c.223G>A	c.(223-225)GGA>AGA	p.G75R	TNFSF14_uc002mfj.1_Missense_Mutation_p.G39R	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	75	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						CCTGCAGGTCCGTCCTGAAAA	0.617													12	22					0	0	0.00136819	0	0
C3	718	broad.mit.edu	37	19	6684620	6684620	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:6684620G>A	uc002mfm.2	-	32	4133	c.4071C>T	c.(4069-4071)ACC>ACT	p.T1357T	C3_uc002mfl.2_Silent_p.T93T	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1357					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ATTTATTACAGGTGAGTTGAT	0.483													37	162					0	0	0.000781405	0	0
C3	718	broad.mit.edu	37	19	6713445	6713445	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:6713445G>A	uc002mfm.2	-	8	911	c.849C>T	c.(847-849)TCC>TCT	p.S283S		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	283					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ATTCAGGCAGGGAAATCCTCT	0.597													19	51					0	0	0.000958276	0	0
SH2D3A	10045	broad.mit.edu	37	19	6754887	6754887	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:6754887G>A	uc002mft.2	-	5	1130	c.936C>T	c.(934-936)CAC>CAT	p.H312H	SH2D3A_uc010xjg.1_Silent_p.H190H	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	312					JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						TCCCAGGATGGTGCTCCAGGA	0.652													45	118					0	0	0.000680045	0	0
PNPLA6	10908	broad.mit.edu	37	19	7615202	7615202	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:7615202C>T	uc010xjq.1	+	17	2055	c.1860C>T	c.(1858-1860)CCC>CCT	p.P620P	PNPLA6_uc002mgq.1_Silent_p.P572P|PNPLA6_uc010xjp.1_Silent_p.P546P|PNPLA6_uc002mgr.1_Silent_p.P572P|PNPLA6_uc002mgs.2_Silent_p.P611P	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	611	cNMP 2.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						GCGCACAGCCCAGTGTGGTGC	0.642													47	140					0	0	0.000781405	0	0
XAB2	56949	broad.mit.edu	37	19	7684837	7684837	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:7684837G>A	uc002mgx.2	-	17	2417	c.2391C>T	c.(2389-2391)TTC>TTT	p.F797F		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	797					transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						CTCACCTCACGAACAGGATCT	0.667								Direct_reversal_of_damage|NER					28	69					0	0	0.000692331	0	0
CD209	30835	broad.mit.edu	37	19	7810924	7810924	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:7810924C>T	uc002mht.2	-	4	295	c.228G>A	c.(226-228)GCG>GCA	p.A76A	CD209_uc010xju.1_Silent_p.A76A|CD209_uc010dvp.2_Silent_p.A52A|CD209_uc002mhr.2_Silent_p.A52A|CD209_uc002mhs.2_Silent_p.A52A|CD209_uc002mhu.2_Silent_p.A76A|CD209_uc010dvq.2_Silent_p.A76A|CD209_uc002mhq.2_Silent_p.A76A|CD209_uc002mhv.2_Silent_p.A52A|CD209_uc002mhx.2_Silent_p.A32A|CD209_uc002mhw.2_Silent_p.A32A|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	76	Extracellular (Probable).				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						TCTGGTAGATCGCGTCTTGCC	0.463													46	141					0	0	0.000781405	0	0
FBN3	84467	broad.mit.edu	37	19	8176063	8176063	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:8176063C>T	uc002mjf.2	-	32	4110	c.4089G>A	c.(4087-4089)AGG>AGA	p.R1363R		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1363	EGF-like 21; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CACATTCATCCCTGTCTGAGG	0.637													14	33					0	0	0.000422831	0	0
FBN3	84467	broad.mit.edu	37	19	8193952	8193953	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:8193952_8193953GG>AA	uc002mjf.2	-	17	2276_2277	c.2255_2256CC>TT	c.(2254-2256)CCC>CTT	p.P752L		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	752	EGF-like 9; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGAAGCCGGGGGGGCAGGAGCA	0.604													22	77					0	0	6.4e-05	0	0
PRAM1	84106	broad.mit.edu	37	19	8564018	8564018	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:8564018G>A	uc002mkd.2	-	2	694	c.674C>T	c.(673-675)CCC>CTC	p.P225L	PRAM1_uc002mkc.2_Missense_Mutation_p.P225L	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	273	Pro-rich.						lipid binding|protein binding				0						AGGCTTTTTGGGGTACACGTT	0.637													18	65					0	0	0.00278032	0	0
PRAM1	84106	broad.mit.edu	37	19	8564377	8564377	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:8564377C>T	uc002mkd.2	-	2	335	c.315G>A	c.(313-315)AAG>AAA	p.K105K	PRAM1_uc002mkc.2_Silent_p.K105K	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	153	Pro-rich.|7.|8 X 12 AA repeats of K-P-P-[PQ]-P-[EQ]- [VAF]-T-D-L-P-K.						lipid binding|protein binding				0						GCGGGGGCTTCTTGGGGAGGT	0.657													52	273					0	0	0.000781405	0	0
PRAM1	84106	broad.mit.edu	37	19	8564413	8564413	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:8564413C>T	uc002mkd.2	-	2	299	c.279G>A	c.(277-279)AAG>AAA	p.K93K	PRAM1_uc002mkc.2_Silent_p.K93K	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	141	Pro-rich.|6.|8 X 12 AA repeats of K-P-P-[PQ]-P-[EQ]- [VAF]-T-D-L-P-K.						lipid binding|protein binding				0						GCGGGGGCTTCTTGGGGAGGT	0.657													21	261					0	0	0.00178596	0	0
MUC16	94025	broad.mit.edu	37	19	9049941	9049941	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9049941C>T	uc002mkp.2	-	5	31894	c.31690G>A	c.(31690-31692)GAA>AAA	p.E10564K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10566	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTCTGATTCTCTATTGAAA	0.493													26	60					0	0	0.000586117	0	0
MUC16	94025	broad.mit.edu	37	19	9060131	9060131	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9060131C>T	uc002mkp.2	-	3	27519	c.27315G>A	c.(27313-27315)GGG>GGA	p.G9105G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9107	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGAGTGGGTCCCTGACATAA	0.483													9	26					0	0	0.000442599	0	0
MUC16	94025	broad.mit.edu	37	19	9062015	9062015	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9062015C>T	uc002mkp.2	-	3	25635	c.25431G>A	c.(25429-25431)GCG>GCA	p.A8477A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8479	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCTGGTGATCGCTTCAGTAG	0.498													40	111					0	0	0.000781405	0	0
MUC16	94025	broad.mit.edu	37	19	9065364	9065364	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9065364C>T	uc002mkp.2	-	3	22286	c.22082G>A	c.(22081-22083)AGA>AAA	p.R7361K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7363	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTGGCAATCTCTGAGTCAT	0.502													7	32					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9066073	9066073	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9066073G>A	uc002mkp.2	-	3	21577	c.21373C>T	c.(21373-21375)CCT>TCT	p.P7125S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7127	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGTCACAGGAAGAGGAGAG	0.517													22	68					0	0	0.000878237	0	0
MUC16	94025	broad.mit.edu	37	19	9072625	9072625	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9072625G>A	uc002mkp.2	-	3	15025	c.14821C>T	c.(14821-14823)CCT>TCT	p.P4941S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4943	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAGGGCCAGGGAAGGATGTA	0.498													22	55					0	0	0.00229938	0	0
MUC16	94025	broad.mit.edu	37	19	9074867	9074867	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9074867G>A	uc002mkp.2	-	3	12783	c.12579C>T	c.(12577-12579)TTC>TTT	p.F4193F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4195	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTCAGACAAGAAAACTGAGG	0.507													12	40					0	0	0.000422831	0	0
MUC16	94025	broad.mit.edu	37	19	9076429	9076429	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9076429G>A	uc002mkp.2	-	3	11221	c.11017C>T	c.(11017-11019)CCC>TCC	p.P3673S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3674	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTGAGATGGGAGTAGATGCA	0.458													15	36					0	0	0.000566183	0	0
MUC16	94025	broad.mit.edu	37	19	9076674	9076674	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9076674G>A	uc002mkp.2	-	3	10976	c.10772C>T	c.(10771-10773)TCC>TTC	p.S3591F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3592	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACAGTCCAGGAATCTGATGC	0.483													32	73					0	0	0.00283554	0	0
MUC16	94025	broad.mit.edu	37	19	9086131	9086131	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9086131G>A	uc002mkp.2	-	1	5888	c.5684C>T	c.(5683-5685)TCC>TTC	p.S1895F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1895	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAAGTCATGGAAGTGTGAGT	0.493													11	28					0	0	0.000978159	0	0
MUC16	94025	broad.mit.edu	37	19	9091108	9091108	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9091108G>A	uc002mkp.2	-	1	911	c.707C>T	c.(706-708)TCC>TTC	p.S236F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	236	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCAAGGAAGGAAGAATAAAG	0.463													18	62					0	0	0.00121646	0	0
MUC16	94025	broad.mit.edu	37	19	9091470	9091470	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9091470C>T	uc002mkp.2	-	1	549	c.345G>A	c.(343-345)AGG>AGA	p.R115R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	115	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGGTAGTTCCTAGAGGGAG	0.502													36	85					0	0	0.00195071	0	0
OR7E24	26648	broad.mit.edu	37	19	9362159	9362159	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9362159C>T	uc002mlb.1	+	1	440	c.440C>T	c.(439-441)CCC>CTC	p.P147L		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATCTGTCACCCCCTGCACTAC	0.453													16	73					0	0	0.000422831	0	0
ZNF177	7730	broad.mit.edu	37	19	9449237	9449237	+	Translation_Start_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9449237G>A	uc002mli.2	+	3	252	c.-411G>A	c.(-413--409)GGGTG>GGATG		ZNF559_uc002mlf.2_Translation_Start_Site|ZNF559_uc010dwl.1_Translation_Start_Site|ZNF559_uc010xkn.1_Intron|ZNF559_uc010dwm.1_Silent_p.G4G|ZNF559_uc002mle.3_Silent_p.G68G|ZNF559_uc010dwk.1_Translation_Start_Site|ZNF559_uc002mld.2_Silent_p.G68G|ZNF559_uc010dwo.1_Silent_p.G32G|ZNF559_uc002mlg.2_Silent_p.G4G|ZNF559_uc002mlh.1_RNA|ZNF177_uc002mlj.2_Intron	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177						negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGGTGGCTGGGTGGTTGACAA	0.378													28	61					0	0	0.00283554	0	0
ZNF846	162993	broad.mit.edu	37	19	9868406	9868407	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:9868406_9868407GG>AA	uc002mmb.1	-	6	1877_1878	c.1346_1347CC>TT	c.(1345-1347)GCC>GTT	p.A449V	ZNF846_uc010xky.1_Intron|ZNF846_uc010xkz.1_Intron|ZNF846_uc010dww.2_Intron|ZNF846_uc002mmc.1_Missense_Mutation_p.A320V	NM_001077624	NP_001071092	Q147U1	ZN846_HUMAN	zinc finger protein 846	449					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TACATTCACAGGCCTTTTCTCC	0.431													17	58					0	0	6.4e-05	0	0
ICAM4	3386	broad.mit.edu	37	19	10398348	10398348	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:10398348C>T	uc002mns.1	+	2	570	c.531C>T	c.(529-531)TCC>TCT	p.S177S	ICAM4_uc002mnr.1_Nonsense_Mutation_p.R152*|ICAM4_uc002mnt.1_Silent_p.S177S|ICAM5_uc002mnu.3_5'Flank	NM_001544	NP_001535	Q14773	ICAM4_HUMAN	intercellular adhesion molecule 4 isoform 1	177	Ig-like C2-type 2.|Extracellular (Potential).				cell-cell adhesion|regulation of immune response	extracellular region|integral to membrane|plasma membrane	integrin binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			TCATCTATTCCGAAAGCCTGG	0.602													22	49					0	0	0.00152264	0	0
PDE4A	5141	broad.mit.edu	37	19	10561537	10561537	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:10561537C>T	uc002moj.2	+	6	811	c.703C>T	c.(703-705)CTG>TTG	p.L235L	PDE4A_uc002mok.2_Silent_p.L209L|PDE4A_uc002mol.2_Silent_p.L174L|PDE4A_uc002mom.2_5'Flank|PDE4A_uc002mon.2_5'Flank	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	235					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	CCGGGAGACTCTGGAGGAGCT	0.602													9	28					0	0	0.00136819	0	0
DOCK6	57572	broad.mit.edu	37	19	11361648	11361648	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:11361648C>T	uc002mqs.3	-	6	663	c.622G>A	c.(622-624)GAG>AAG	p.E208K		NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	208					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GCCGCCCGCTCTAGCAGAGAG	0.657													25	59					0	0	0.000586117	0	0
ZNF69	7620	broad.mit.edu	37	19	12014453	12014453	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:12014453T>C	uc002mst.3	+	2	156	c.87T>C	c.(85-87)ATT>ATC	p.I29I		NM_021915	NP_068734	Q9UC07	ZNF69_HUMAN	zinc finger protein 69	43	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				Lung(535;0.011)		TGCTGGATATTTCCCAGAGGA	0.478													18	89					0	0	0.00121646	0	0
CACNA1A	773	broad.mit.edu	37	19	13414658	13414658	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:13414658C>T	uc010dze.2	-	16	2266	c.2030G>A	c.(2029-2031)GGG>GAG	p.G677E	CACNA1A_uc010dzc.2_Missense_Mutation_p.G202E|CACNA1A_uc002mwy.3_Missense_Mutation_p.G676E|CACNA1A_uc010xne.1_Missense_Mutation_p.G202E	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	677	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	AGACTTGATCCCGTCGTACAT	0.557													68	194					0	0	0.000781405	0	0
IL27RA	9466	broad.mit.edu	37	19	14163023	14163023	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:14163023C>T	uc002mxx.2	+	14	2255	c.1832C>T	c.(1831-1833)TCT>TTT	p.S611F		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	611	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						CCGCTTGACTCTGGGTATGAG	0.677													8	20					0	0	0.000673444	0	0
CLEC17A	388512	broad.mit.edu	37	19	14710852	14710852	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:14710852G>A	uc010dzn.1	+	12	829	c.752G>A	c.(751-753)CGA>CAA	p.R251Q	CLEC17A_uc002mzh.1_Missense_Mutation_p.R234Q|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Intron|CLEC17A_uc010dzo.1_Missense_Mutation_p.R251Q			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	251	Extracellular (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						GACTGCCGCCGAATTACCTGT	0.468													15	31					0	0	0.000566183	0	0
EMR3	84658	broad.mit.edu	37	19	14752363	14752363	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:14752363G>A	uc002mzi.3	-	10	1264	c.1116C>T	c.(1114-1116)CTC>CTT	p.L372L	EMR3_uc010dzp.2_Silent_p.L320L|EMR3_uc010xnv.1_Silent_p.L246L	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	372	Helical; Name=1; (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						GGGCCGCCAGGAGGAGGCACA	0.577													9	44					0	0	0.000673444	0	0
EMR2	30817	broad.mit.edu	37	19	14875257	14875257	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:14875257G>A	uc002mzp.1	-	11	1528	c.1072C>T	c.(1072-1074)CCT>TCT	p.P358S	EMR2_uc010dzs.1_5'UTR|EMR2_uc010xnw.1_Missense_Mutation_p.P358S|EMR2_uc002mzo.1_Missense_Mutation_p.P358S|EMR2_uc002mzq.1_Missense_Mutation_p.P309S|EMR2_uc002mzr.1_Missense_Mutation_p.P309S|EMR2_uc002mzs.1_Missense_Mutation_p.P216S|EMR2_uc002mzt.1_Missense_Mutation_p.P265S|EMR2_uc002mzu.1_Missense_Mutation_p.P265S|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	358	Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						GTGCCTGCAGGATAACTGAAG	0.562													11	50					0	0	0.000308642	0	0
OR7A5	26659	broad.mit.edu	37	19	14938326	14938326	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:14938326G>A	uc002mzw.2	-	1	951	c.728C>T	c.(727-729)TCT>TTT	p.S243F	OR7A5_uc010xoa.1_Missense_Mutation_p.S243F	NM_017506	NP_059976	Q15622	OR7A5_HUMAN	olfactory receptor, family 7, subfamily A,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(2)	2						TGAGAGGTGAGATGCACAGGT	0.473													19	44					0	0	0.00229938	0	0
CCDC105	126402	broad.mit.edu	37	19	15131429	15131429	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:15131429C>T	uc002nae.2	+	3	931	c.832C>T	c.(832-834)CAG>TAG	p.Q278*		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	278					microtubule cytoskeleton organization	microtubule				ovary(1)	1						CACACAGGGTCAGAAAACGCC	0.602													6	24					0	0	0.00198382	0	0
CCDC105	126402	broad.mit.edu	37	19	15132481	15132481	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:15132481G>A	uc002nae.2	+	5	1194	c.1095G>A	c.(1093-1095)ACG>ACA	p.T365T		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	365					microtubule cytoskeleton organization	microtubule				ovary(1)	1						TCCGGTGTACGAAATATAACC	0.592													32	61					0	0	0.00128727	0	0
CYP4F3	4051	broad.mit.edu	37	19	15763658	15763658	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:15763658C>T	uc002nbj.2	+	9	1061	c.1011C>T	c.(1009-1011)CTC>CTT	p.L337L	CYP4F3_uc010xok.1_Silent_p.L337L|CYP4F3_uc010xol.1_Silent_p.L337L|CYP4F3_uc010xom.1_Silent_p.L188L|CYP4F3_uc002nbk.2_Silent_p.L337L|CYP4F3_uc010xon.1_Silent_p.L47L	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	337					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						CCAGTGGTCTCTCCTGGGTCC	0.597											OREG0007254	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=CYP4F3|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	13	56					0	0	0.00185496	0	0
CYP4F12	66002	broad.mit.edu	37	19	15795991	15795991	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:15795991C>T	uc002nbl.2	+	9	1160	c.1099C>T	c.(1099-1101)CCT>TCT	p.P367S		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GGACCGCGATCCTAAAGAGAT	0.562													19	80					0	0	0.00229938	0	0
OR10H2	26538	broad.mit.edu	37	19	15839162	15839162	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:15839162C>T	uc002nbm.2	+	1	329	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					AGATGTTCTTCTCCTTCAGCT	0.617													10	25					0	0	0.00074312	0	0
CALR3	125972	broad.mit.edu	37	19	16591507	16591507	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:16591507C>T	uc002ned.2	-	8	992	c.929G>A	c.(928-930)GGA>GAA	p.G310E	MED26_uc002nee.2_RNA	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	310	C-domain.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						AAAAATGGTTCCAGATCTCAC	0.348													21	66					0	0	0.00121646	0	0
C19orf44	84167	broad.mit.edu	37	19	16611602	16611602	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:16611602G>A	uc002neh.1	+	2	73	c.0_splice	c.e2-1		MED26_uc002nee.2_Intron|C19orf44_uc002nef.1_Splice_Site|C19orf44_uc002neg.2_Splice_Site|C19orf44_uc010eai.1_Splice_Site	NM_032207	NP_115583	Q9H6X5	CS044_HUMAN	hypothetical protein LOC84167												0						TTCCTCCACAGAATGGCTTCT	0.443													72	179					0	0	0.000781405	0	0
C19orf44	84167	broad.mit.edu	37	19	16617511	16617511	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:16617511G>A	uc002neh.1	+	4	1149	c.1076_splice	c.e4-1	p.E359_splice	MED26_uc002nee.2_Intron|C19orf44_uc002nef.1_Splice_Site_p.E359_splice|C19orf44_uc002neg.2_Splice_Site_p.E359_splice|C19orf44_uc010eai.1_Splice_Site	NM_032207	NP_115583	Q9H6X5	CS044_HUMAN	hypothetical protein LOC84167												0						TTTAATTACAGAGTTTAGAAT	0.284													6	26					0	0	0.000157383	0	0
CHERP	10523	broad.mit.edu	37	19	16633892	16633893	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:16633892_16633893GG>AA	uc002nei.1	-	11	2024_2025	c.1950_1951CC>TT	c.(1948-1953)CTCCCT>CTTTCT	p.P651S	MED26_uc002nee.2_Intron|CHERP_uc010xpg.1_Missense_Mutation_p.P190S	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	651	Pro-rich.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						AGCCCAGCAGGGAGATCGAAGT	0.609													29	84					0	0	6.4e-05	0	0
NWD1	284434	broad.mit.edu	37	19	16902209	16902209	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:16902209G>A	uc002neu.3	+	14	3411	c.2989G>A	c.(2989-2991)GGA>AGA	p.G997R	NWD1_uc002net.3_Missense_Mutation_p.G862R|NWD1_uc002nev.3_Missense_Mutation_p.G791R			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	997							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CCATATCCTGGGAGATGCCTC	0.527													38	107					0	0	0.0025221	0	0
CPAMD8	27151	broad.mit.edu	37	19	17014391	17014391	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:17014391C>T	uc002nfb.2	-	34	4623	c.4591G>A	c.(4591-4593)GAC>AAC	p.D1531N	CPAMD8_uc002nfd.1_5'UTR	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1484						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CAGCAGCCGTCCCCCTTGGCA	0.617													32	56					0	0	0.00058488	0	0
PLVAP	83483	broad.mit.edu	37	19	17476443	17476443	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:17476443G>A	uc002ngk.1	-	3	881	c.831C>T	c.(829-831)AGC>AGT	p.S277S		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	277	Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						AGCTCATGAGGCTGGGCATGT	0.632													21	57					0	0	0.00188189	0	0
PLVAP	83483	broad.mit.edu	37	19	17488043	17488043	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:17488043G>A	uc002ngk.1	-	1	105	c.55C>T	c.(55-57)CGG>TGG	p.R19W		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	19	Cytoplasmic (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						CAGCAGCCCCGAGAGCTGCCC	0.622													28	92					0	0	0.00058488	0	0
GLT25D1	79709	broad.mit.edu	37	19	17690299	17690300	+	Missense_Mutation	DNP	CC	TT	TT	rs150637824	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:17690299_17690300CC>TT	uc002nhc.1	+	10	1287_1288	c.1275_1276CC>TT	c.(1273-1278)GACCGG>GATTGG	p.R426W	GLT25D1_uc010eax.1_Missense_Mutation_p.R154W|GLT25D1_uc010eay.1_5'Flank	NM_024656	NP_078932	Q8NBJ5	GT251_HUMAN	glycosyltransferase 25 domain containing 1	426					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity				0						AGGTGGTGGACCGGGGGCTGCA	0.564													42	101					0	0	6.4e-05	0	0
UNC13A	23025	broad.mit.edu	37	19	17759345	17759345	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:17759345C>T	uc002nhd.2	-	16	1975	c.1975G>A	c.(1975-1977)GAG>AAG	p.E659K		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	571	Phorbol-ester/DAG-type.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						AGCAGCCCCTCGCACTCGTAG	0.627													16	48					0	0	0.00074312	0	0
UNC13A	23025	broad.mit.edu	37	19	17785506	17785506	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:17785506C>T	uc002nhd.2	-	4	376	c.376G>A	c.(376-378)GTG>ATG	p.V126M		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	38	C2 1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						CTGCCCCGCACCGCGATGGTC	0.602													21	72					0	0	0.00127121	0	0
FCHO1	23149	broad.mit.edu	37	19	17893836	17893836	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:17893836C>T	uc010ebb.2	+	23	2137	c.1948C>T	c.(1948-1950)CGA>TGA	p.R650*	FCHO1_uc002nhg.3_Nonsense_Mutation_p.R650*|FCHO1_uc002nhh.2_Nonsense_Mutation_p.R650*|FCHO1_uc010xpw.1_Nonsense_Mutation_p.R600*|FCHO1_uc002nhi.2_Nonsense_Mutation_p.R106*|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	650										breast(1)	1						CTGCCTGGCTCGAGTAACTGG	0.612													13	42					0	0	0.000422831	0	0
JAK3	3718	broad.mit.edu	37	19	17948773	17948773	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:17948773C>T	uc002nhn.3	-	12	1769	c.1669G>A	c.(1669-1671)GTC>ATC	p.V557I	JAK3_uc010ebh.2_RNA|JAK3_uc002nho.2_Missense_Mutation_p.V557I	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	557	Protein kinase 1.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						GCATCCATGACCTTCAGCAGC	0.582		2	Mis		acute megakaryocytic leukemia|								105	246					0	0	0.000781405	0	0
SLC5A5	6528	broad.mit.edu	37	19	18001725	18001725	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18001725G>A	uc002nhr.3	+	14	2029	c.1682G>A	c.(1681-1683)GGA>GAA	p.G561E		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	561	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CTGGCCCCGGGATTGTTGTGG	0.602													60	117					0	0	0.000781405	0	0
CCDC124	115098	broad.mit.edu	37	19	18054467	18054467	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18054467C>T	uc010xpz.1	+	5	660	c.615C>T	c.(613-615)CTC>CTT	p.L205L	CCDC124_uc002nhs.2_Silent_p.L205L	NM_001136203	NP_001129675	Q96CT7	CC124_HUMAN	coiled-coil domain containing 124	205							DNA binding				0						AGGAGTGGCTCCGCTCTCCTG	0.612													18	40					0	0	0.00074312	0	0
IL12RB1	3594	broad.mit.edu	37	19	18182980	18182980	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18182980C>T	uc002nhw.1	-	9	1027	c.963G>A	c.(961-963)TCG>TCA	p.S321S	IL12RB1_uc010xqb.1_Silent_p.S321S|IL12RB1_uc002nhx.1_Silent_p.S361S|IL12RB1_uc002nhy.2_Silent_p.S321S	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	321	Extracellular (Potential).|Fibronectin type-III 3.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CAAATTGGTTCGAGGAGATGA	0.627													12	36					0	0	0.00185496	0	0
ISYNA1	51477	broad.mit.edu	37	19	18547219	18547219	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18547219C>T	uc002njd.1	-	6	730	c.680G>A	c.(679-681)TGG>TAG	p.W227*	ISYNA1_uc002nja.1_Nonsense_Mutation_p.W99*|ISYNA1_uc002njb.1_Nonsense_Mutation_p.W145*|ISYNA1_uc002njc.1_Nonsense_Mutation_p.W77*|ISYNA1_uc010xqh.1_Nonsense_Mutation_p.W25*|ISYNA1_uc002nje.1_Nonsense_Mutation_p.W173*|ISYNA1_uc002njf.1_Nonsense_Mutation_p.W77*	NM_016368	NP_057452	Q9NPH2	INO1_HUMAN	inositol-3-phosphate synthase 1	227					inositol biosynthetic process|phospholipid biosynthetic process	cytoplasm	binding|inositol-3-phosphate synthase activity			ovary(1)|pancreas(1)	2						GTTCGCCGTCCACAGCACTAT	0.627													39	85					0	0	0.00222228	0	0
C19orf50	79036	broad.mit.edu	37	19	18675733	18675733	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18675733C>T	uc002njo.2	+	3	298	c.156C>T	c.(154-156)TCC>TCT	p.S52S	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Silent_p.S52S	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	52							protein binding				0						ACAACCTGTCCAGTGCCCGCC	0.572													82	159					0	0	0.000781405	0	0
C19orf50	79036	broad.mit.edu	37	19	18675783	18675783	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18675783C>T	uc002njo.2	+	3	348	c.206C>T	c.(205-207)ACC>ATC	p.T69I	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Missense_Mutation_p.T69I	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	69							protein binding				0						CACACGAGGACCCTAGTAGAG	0.592													41	164					0	0	0.00285205	0	0
C19orf50	79036	broad.mit.edu	37	19	18679325	18679325	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18679325G>A	uc002njo.2	+	5	557	c.415G>A	c.(415-417)GAC>AAC	p.D139N	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Missense_Mutation_p.D139N	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	139							protein binding				0						CACCAGCCCCGACACCGTCTC	0.637													53	145					0	0	0.000781405	0	0
UPF1	5976	broad.mit.edu	37	19	18961604	18961604	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18961604C>T	uc002nkg.2	+	5	1012	c.737C>T	c.(736-738)CCC>CTC	p.P246L	UPF1_uc002nkf.2_Missense_Mutation_p.P246L	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	246	Sufficient for interaction with RENT2.				cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GTCAAGATCCCCTCCGAGCAG	0.652													9	16					0	0	0.000673444	0	0
UPF1	5976	broad.mit.edu	37	19	18976152	18976152	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:18976152C>T	uc002nkg.2	+	21	3220	c.2945C>T	c.(2944-2946)GCC>GTC	p.A982V	UPF1_uc002nkf.2_Missense_Mutation_p.A971V|UPF1_uc002nkh.2_Missense_Mutation_p.A226V	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	982					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						ATGATCAGTGCCGGCCCTAGC	0.587													13	37					0	0	0.00136819	0	0
NR2C2AP	126382	broad.mit.edu	37	19	19313657	19313657	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:19313657C>T	uc002nlx.2	-	2	441	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q	NR2C2AP_uc010xqq.1_5'Flank|NR2C2AP_uc002nly.2_Silent_p.Q24Q	NM_176880	NP_795361	Q86WQ0	NR2CA_HUMAN	TR4 orphan receptor associated protein TRA16	24					cell adhesion|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm				ovary(1)	1			Epithelial(12;0.00235)			TTTTTCCAAACTGCCGAGTGT	0.562													24	97					0	0	0.00106085	0	0
LOC284441	284441	broad.mit.edu	37	19	20370036	20370036	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:20370036G>A	uc002nov.2	+	1	1580	c.829G>A	c.(829-831)GAT>AAT	p.D277N		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						AGTTTTGAAGGATGATGCGGA	0.423													14	28					0	0	0.00185496	0	0
ZNF100	163227	broad.mit.edu	37	19	21910780	21910780	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:21910780G>A	uc002nqi.2	-	5	533	c.334C>T	c.(334-336)CAT>TAT	p.H112Y	ZNF100_uc002nqh.2_Missense_Mutation_p.H48Y	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	112					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGGGAAAATGAGAACATATA	0.289													8	27					0	0	0.000274275	0	0
ZNF208	7757	broad.mit.edu	37	19	22154164	22154164	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:22154164G>A	uc002nqp.2	-	6	3437	c.3288C>T	c.(3286-3288)CCC>CCT	p.P1096P	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CACATTTGTAGGGTTTCTCTC	0.383													4	31					0	0	0.00024832	0	0
ZNF208	7757	broad.mit.edu	37	19	22154722	22154722	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:22154722G>A	uc002nqp.2	-	6	2879	c.2730C>T	c.(2728-2730)TTC>TTT	p.F910F	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGGGCCAGCTGAAGGCTTTGT	0.443													24	54					0	0	0.000878237	0	0
ZNF208	7757	broad.mit.edu	37	19	22155201	22155201	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:22155201G>A	uc002nqp.2	-	5	2484	c.2335C>T	c.(2335-2337)CAT>TAT	p.H779Y	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ATTTTCTTATGATAACTAAGG	0.363													9	27					0	0	0.000442599	0	0
ZNF676	163223	broad.mit.edu	37	19	22363477	22363477	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:22363477G>A	uc002nqs.1	-	3	1360	c.1042C>T	c.(1042-1044)CGA>TGA	p.R348*		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	348	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				ATTGAGGATCGATTAAAAGCT	0.413													11	54					0	0	0.000978159	0	0
ZNF99	7652	broad.mit.edu	37	19	22940058	22940058	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:22940058G>A	uc010xrh.1	-	6	2273	c.2273C>T	c.(2272-2274)TCC>TTC	p.S758F		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAGGGTTGAGGAATTGTTAAA	0.348													18	48					0	0	0.00152264	0	0
ZNF99	7652	broad.mit.edu	37	19	22941146	22941146	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:22941146G>A	uc010xrh.1	-	5	1292	c.1292C>T	c.(1291-1293)TCA>TTA	p.S431L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTAAGGGCTGAGAAATGCTT	0.348													7	36					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	19	23159812	23159812	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:23159812C>T	uc002nqy.1	-	3		c.338G>A			uc002nqz.1_Silent_p.E45E					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		ACTGTAAATTCTCATGTCCAC	0.353													8	27					0	0	0.000157383	0	0
ZNF536	9745	broad.mit.edu	37	19	30936617	30936617	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:30936617C>T	uc002nsu.1	+	2	2286	c.2148C>T	c.(2146-2148)CAC>CAT	p.H716H	ZNF536_uc010edd.1_Silent_p.H716H	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	716					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACAGCCCGCACCCCTCCTCGC	0.677													14	19					0	0	0.00074312	0	0
ZNF536	9745	broad.mit.edu	37	19	31039159	31039159	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:31039159C>T	uc002nsu.1	+	4	2771	c.2633C>T	c.(2632-2634)TCG>TTG	p.S878L	ZNF536_uc010edd.1_Missense_Mutation_p.S878L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	878					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGCATGTCTTCGGAGGTCCCC	0.557													35	67					0	0	0.00170553	0	0
SLC7A9	11136	broad.mit.edu	37	19	33353095	33353095	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:33353095G>A	uc002ntv.3	-	6	750	c.633C>T	c.(631-633)TTC>TTT	p.F211F	SLC7A9_uc002ntt.3_Intron|SLC7A9_uc002ntu.3_Silent_p.F211F|SLC7A9_uc002ntw.3_Intron	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	211	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	GGGCGCCCTCGAAAGAATTAT	0.517													28	54					0	0	0.00106085	0	0
RHPN2	85415	broad.mit.edu	37	19	33482830	33482830	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:33482830G>C	uc002nuf.2	-	13	1609	c.1543C>G	c.(1543-1545)CGA>GGA	p.R515G	RHPN2_uc010xro.1_Missense_Mutation_p.R364G|RHPN2_uc002nue.2_Missense_Mutation_p.R245G	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	515	PDZ.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					CGGATGCTTCGAGGAGGCGTC	0.547													12	37					0	0	0.000422831	0	0
KIAA0355	9710	broad.mit.edu	37	19	34791850	34791850	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:34791850G>A	uc002nvd.3	+	2	1331	c.472G>A	c.(472-474)GAA>AAA	p.E158K	KIAA0355_uc010edk.1_Missense_Mutation_p.E148K	NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	158										ovary(1)	1	Esophageal squamous(110;0.162)					GGATCAGAAGGAATTCAGTCT	0.423													19	31					0	0	0.00229938	0	0
FXYD5	53827	broad.mit.edu	37	19	35657203	35657203	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:35657203C>T	uc002nyg.1	+	8	548	c.462C>T	c.(460-462)TTC>TTT	p.F154F	FXYD5_uc010xsq.1_Silent_p.F154F|FXYD5_uc002nyh.1_Silent_p.F154F|FXYD5_uc002nyi.1_Silent_p.F91F|FXYD5_uc002nyj.1_5'Flank	NM_014164	NP_054883	Q96DB9	FXYD5_HUMAN	FXYD domain-containing ion transport regulator 5	154	Helical; (Potential).				microvillus assembly|negative regulation of calcium-dependent cell-cell adhesion	integral to membrane	actin binding|cadherin binding|ion channel activity				0	all_lung(56;9.4e-09)|Lung NSC(56;1.4e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.75e-22)|OV - Ovarian serous cystadenocarcinoma(14;3.17e-20)|all cancers(14;7.07e-19)|LUSC - Lung squamous cell carcinoma(66;0.0221)			CTGTGCTGTTCATCACAGGCA	0.552													43	62					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	19	35863086	35863086	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:35863086C>T	uc002nze.2	+	1	830	c.825C>T	c.(823-825)GTC>GTT	p.V275V		NM_005304	NP_005295			free fatty acid receptor 3																		ACCCCTTTGTCTACTACTTCT	0.587													22	47					0	0	0.00127121	0	0
FFAR2	2867	broad.mit.edu	37	19	35941189	35941189	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:35941189C>T	uc002nzg.2	+	2	653	c.573C>T	c.(571-573)CCC>CCT	p.P191P	FFAR2_uc010eea.2_Silent_p.P191P	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	191	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			TCTTCATCCCCATGGCAGTCA	0.607													46	94					0	0	0.000781405	0	0
KIRREL2	84063	broad.mit.edu	37	19	36349727	36349728	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:36349727_36349728CC>TT	uc002ocb.3	+	4	695_696	c.483_484CC>TT	c.(481-486)TTCCGA>TTTTGA	p.R162*	KIRREL2_uc002obz.3_Nonsense_Mutation_p.R162*|KIRREL2_uc002oca.3_Nonsense_Mutation_p.R112*|KIRREL2_uc002occ.3_Nonsense_Mutation_p.R109*|KIRREL2_uc002ocd.3_Nonsense_Mutation_p.R159*	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	162	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCTGTGGTTCCGAGATGGGGT	0.584													23	74					0	0	6.4e-05	0	0
KIRREL2	84063	broad.mit.edu	37	19	36357106	36357106	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:36357106G>A	uc002ocb.3	+	15	2051	c.1839G>A	c.(1837-1839)CTG>CTA	p.L613L	KIRREL2_uc002obz.3_Intron|KIRREL2_uc002oca.3_Intron|KIRREL2_uc002occ.3_Silent_p.L560L|KIRREL2_uc002ocd.3_Silent_p.L575L|APLP1_uc010xsz.1_5'Flank|APLP1_uc002oce.2_5'Flank|APLP1_uc002ocf.2_5'Flank|APLP1_uc002ocg.2_5'Flank	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	613	Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GTGTGAGCCTGAGCCTTGGCG	0.607													24	56					0	0	0.000586117	0	0
KIRREL2	84063	broad.mit.edu	37	19	36357125	36357125	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:36357125G>A	uc002ocb.3	+	15	2070	c.1858G>A	c.(1858-1860)GGA>AGA	p.G620R	KIRREL2_uc002obz.3_Intron|KIRREL2_uc002oca.3_Intron|KIRREL2_uc002occ.3_Missense_Mutation_p.G567R|KIRREL2_uc002ocd.3_Missense_Mutation_p.G582R|APLP1_uc010xsz.1_5'Flank|APLP1_uc002oce.2_5'Flank|APLP1_uc002ocf.2_5'Flank|APLP1_uc002ocg.2_5'Flank	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	620	Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CGAAGCCCCTGGAGGAGGTCT	0.612													15	42					0	0	0.000958276	0	0
ZFP14	57677	broad.mit.edu	37	19	36831980	36831980	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:36831980G>A	uc002odx.1	-	4	841	c.748C>T	c.(748-750)CAT>TAT	p.H250Y	ZFP14_uc010xtd.1_Missense_Mutation_p.H251Y|ZFP14_uc010eex.1_Missense_Mutation_p.H250Y	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	250	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					TCACCCGTATGAAGTCTCTGA	0.448													13	36					0	0	0.00244969	0	0
CATSPERG	57828	broad.mit.edu	37	19	38848958	38848958	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:38848958C>T	uc002oih.3	+	12	1443	c.1356C>T	c.(1354-1356)TTC>TTT	p.F452F	CATSPERG_uc002oig.3_Silent_p.F412F|CATSPERG_uc002oif.3_Silent_p.F92F|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	452	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						TCCCAGAATTCATCCCTGAAG	0.562													23	44					0	0	0.00278032	0	0
RYR1	6261	broad.mit.edu	37	19	38987159	38987159	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:38987159G>A	uc002oit.2	+	41	6904	c.6774G>A	c.(6772-6774)CTG>CTA	p.L2258L	RYR1_uc002oiu.2_Silent_p.L2258L|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2258	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCTACCTGCTGGAGAACAGTG	0.632													39	58					0	0	0.000781405	0	0
RYR1	6261	broad.mit.edu	37	19	38995653	38995653	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:38995653C>T	uc002oit.2	+	52	8372	c.8242C>T	c.(8242-8244)CCG>TCG	p.P2748S	RYR1_uc002oiu.2_Missense_Mutation_p.P2748S|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2748	5.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TGTGATCATCCCGGAGAAGCT	0.567													21	39					0	0	0.00278032	0	0
LGALS4	3960	broad.mit.edu	37	19	39299477	39299477	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:39299477C>T	uc002ojg.2	-	3	460	c.246G>A	c.(244-246)GGG>GGA	p.G82G	LGALS4_uc010xuj.1_Silent_p.G82G	NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	82	Galectin 1.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			TGCCCCACTTCCCGCCCTGCA	0.582													30	49					0	0	0.00209593	0	0
FCGBP	8857	broad.mit.edu	37	19	40396005	40396005	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:40396005G>A	uc002omp.3	-	15	7400	c.7392C>T	c.(7390-7392)TTC>TTT	p.F2464F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2464	VWFD 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCGGCCATCGAAGGTGGTGT	0.672													16	69					0	0	0.000566183	0	0
CEACAM8	1088	broad.mit.edu	37	19	43093036	43093036	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:43093036G>A	uc002oud.2	-	4	960	c.858C>T	c.(856-858)ATC>ATT	p.I286I	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	286	Ig-like C2-type 2.				immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				TGATGTTGGGGATAAAGAGCT	0.498													15	27					0	0	0.00244969	0	0
PSG8	440533	broad.mit.edu	37	19	43262317	43262317	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:43262317C>T	uc002ouo.2	-	3	644	c.546G>A	c.(544-546)ATG>ATA	p.M182I	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Missense_Mutation_p.M21I|PSG8_uc002ouh.2_Missense_Mutation_p.M182I|PSG8_uc010ein.2_Missense_Mutation_p.M60I|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Missense_Mutation_p.M21I|PSG8_uc002oul.3_Missense_Mutation_p.M182I|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	182	Ig-like C2-type 1.					extracellular region					0		Prostate(69;0.00899)				TCTGACCATTCATCCACCACA	0.527													53	109					0	0	0.000781405	0	0
PSG7	5676	broad.mit.edu	37	19	43430668	43430668	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:43430668C>T	uc002ovl.3	-	5	1012	c.910G>A	c.(910-912)GAA>AAA	p.E304K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.E182K	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	304	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGTCCTGTTTCATTTCTCGTG	0.498													47	45					0	0	0.000781405	0	0
KCNN4	3783	broad.mit.edu	37	19	44278600	44278600	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:44278600C>T	uc002oxl.2	-	3	823	c.427G>A	c.(427-429)GGA>AGA	p.G143R	KCNN4_uc010eiz.2_Missense_Mutation_p.G56R|KCNN4_uc010eja.1_RNA	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	143	Helical; Name=Segment S4; (Potential).				defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	CCCAGGAATCCCGGCCAGGGC	0.731											OREG0025535	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	1					0	0	0.00024832	0	0
ZNF223	7766	broad.mit.edu	37	19	44570909	44570909	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:44570909C>T	uc002oyf.1	+	5	1181	c.928C>T	c.(928-930)CAC>TAC	p.H310Y	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	310	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				TTGTGTGGTCCACACAGGAAA	0.448													22	47					0	0	0.00229938	0	0
CEACAM19	56971	broad.mit.edu	37	19	45175243	45175243	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:45175243A>C	uc002ozo.3	+	1	520	c.40A>C	c.(40-42)AGC>CGC	p.S14R	CEACAM19_uc002ozp.3_Missense_Mutation_p.S14R	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	14						integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				CTTCTCAAAGAGCCTCCTGCT	0.547													27	58					0	0	0.00209593	0	0
CEACAM16	388551	broad.mit.edu	37	19	45207424	45207424	+	Silent	SNP	C	T	T	rs114645388	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:45207424C>T	uc010xxd.1	+	4	725	c.519C>T	c.(517-519)GTC>GTT	p.V173V	CEACAM16_uc002ozq.2_Silent_p.V232V	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	173										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				CCCTGCCCGTCGCTCTCCGCC	0.711													25	36					0	0	0.00106085	0	0
BCAM	4059	broad.mit.edu	37	19	45322411	45322411	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:45322411C>T	uc002ozu.2	+	11	1479	c.1435C>T	c.(1435-1437)CCA>TCA	p.P479S	BCAM_uc002ozt.1_Missense_Mutation_p.P479S	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	479	Extracellular (Potential).|Ig-like C2-type 3.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				CCGCGGCCATCCAGACCCCAA	0.592													98	177					0	0	0.000781405	0	0
DMWD	1762	broad.mit.edu	37	19	46289884	46289884	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:46289884G>A	uc002pdj.1	-	3	916	c.870C>T	c.(868-870)TTC>TTT	p.F290F	DMWD_uc002pdk.1_Silent_p.F290F|DMWD_uc010eko.1_5'UTR	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	290	WD 2.				meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		GCGAGAAGGCGAACTCGTTGA	0.652													10	28					0	0	0.000673444	0	0
NOVA2	4858	broad.mit.edu	37	19	46443169	46443169	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:46443169G>A	uc002pdv.2	-	4	1479	c.1431C>T	c.(1429-1431)GTC>GTT	p.V477V		NM_002516	NP_002507	Q9UNW9	NOVA2_HUMAN	neuro-oncological ventral antigen 2	477						nucleus	RNA binding				0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00245)|GBM - Glioblastoma multiforme(486;0.0782)|Epithelial(262;0.179)		GCTCGTAGGTGACCCGCTGAC	0.567													22	26					0	0	0.00278032	0	0
CCDC61	729440	broad.mit.edu	37	19	46498721	46498721	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:46498721C>T	uc002pdw.2	+	2	119	c.119C>T	c.(118-120)TCG>TTG	p.S40L		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		GCTGGAGCTTCGTCAGTTGAA	0.622													13	14					0	0	0.000308642	0	0
STRN4	29888	broad.mit.edu	37	19	47225256	47225256	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:47225256G>A	uc002pfl.2	-	16	2112	c.2079C>T	c.(2077-2079)TTC>TTT	p.F693F	STRN4_uc002pfm.2_Silent_p.F700F|STRN4_uc010xyf.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	693	WD 6.					cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		CTGACATCAGGAATGCGCCGT	0.632													41	52					0	0	0.000781405	0	0
SLC1A5	6510	broad.mit.edu	37	19	47280476	47280476	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:47280476G>A	uc002pfs.2	-	6	1865	c.1245C>T	c.(1243-1245)ATC>ATT	p.I415I	SLC1A5_uc010xyh.1_Silent_p.I213I|SLC1A5_uc002pfq.2_Silent_p.I239I|SLC1A5_uc002pfr.2_Silent_p.I187I	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	415	Helical; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	ACAGGATGGTGATGATCTTTA	0.607													20	53					0	0	0.00278032	0	0
DHX34	9704	broad.mit.edu	37	19	47861215	47861215	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:47861215C>T	uc010xyn.1	+	4	1451	c.1110C>T	c.(1108-1110)GAC>GAT	p.D370D	DHX34_uc010elc.1_Intron	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	370	Helicase C-terminal.					intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		AGTCCATTGACCACAAGTACC	0.652													17	25					0	0	0.00152264	0	0
CARD8	22900	broad.mit.edu	37	19	48735002	48735002	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:48735002C>T	uc002pie.3	-	4	455	c.142G>A	c.(142-144)GAA>AAA	p.E48K	CARD8_uc002pii.3_Missense_Mutation_p.E153K|CARD8_uc010xzi.1_Missense_Mutation_p.E48K|CARD8_uc010els.2_Missense_Mutation_p.E86K|CARD8_uc010xzj.1_Missense_Mutation_p.E153K|CARD8_uc010xzk.1_Missense_Mutation_p.E72K|CARD8_uc002pif.3_Missense_Mutation_p.E48K|CARD8_uc002pig.3_5'UTR|CARD8_uc002pih.3_Missense_Mutation_p.E103K|CARD8_uc010xzl.1_Missense_Mutation_p.E103K|CARD8_uc010xzm.1_Missense_Mutation_p.E153K	NM_014959	NP_055774	Q9Y2G2	CARD8_HUMAN	caspase recruitment domain family, member 8	48					negative regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion	cytoplasm|nucleus	caspase activator activity|NACHT domain binding|protein homodimerization activity				0		all_lung(116;0.000112)|Lung NSC(112;0.000192)|all_epithelial(76;0.000349)|all_neural(266;0.0228)|Ovarian(192;0.113)|Prostate(7;0.184)		OV - Ovarian serous cystadenocarcinoma(262;0.000112)|all cancers(93;0.000293)|Epithelial(262;0.0129)|GBM - Glioblastoma multiforme(486;0.0336)		TAATCTTCTTCGATCTCAAAA	0.358													40	49					0	0	0.00170553	0	0
CYTH2	9266	broad.mit.edu	37	19	48981785	48981785	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:48981785C>T	uc002pjj.3	+	12	1351	c.1051C>T	c.(1051-1053)CAC>TAC	p.H351Y	CYTH2_uc002pji.2_RNA	NM_017457	NP_059431	Q99418	CYH2_HUMAN	cytohesin 2 isoform 1	351	PH.				actin cytoskeleton organization|endocytosis|regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|membrane fraction|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						GGAGGGAAACCACATGGTGTA	0.473													18	41					0	0	0.00121646	0	0
NTN5	126147	broad.mit.edu	37	19	49173966	49173966	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:49173966G>A	uc002pkb.2	-	2	374	c.278C>T	c.(277-279)TCT>TTT	p.S93F	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Missense_Mutation_p.S93F	NM_145807	NP_665806	Q8WTR8	NET5_HUMAN	netrin 5 precursor	93						extracellular region				large_intestine(1)|pancreas(1)	2						CCAGGCAGCAGACAGGATGAG	0.662													4	16					0	0	0.00024832	0	0
TRPM4	54795	broad.mit.edu	37	19	49686156	49686156	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:49686156C>T	uc002pmw.2	+	11	1657	c.1585C>T	c.(1585-1587)CCA>TCA	p.P529S	TRPM4_uc010emu.2_Missense_Mutation_p.P529S|TRPM4_uc010yak.1_Intron|TRPM4_uc002pmx.2_Missense_Mutation_p.P355S|TRPM4_uc010emv.2_Missense_Mutation_p.P414S|TRPM4_uc010yal.1_Missense_Mutation_p.P175S|TRPM4_uc002pmy.2_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	529	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		GGACCCTCACCCAGGCCAGGG	0.721													10	15					0	0	0.000673444	0	0
PRR12	57479	broad.mit.edu	37	19	50100028	50100028	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:50100028C>T	uc002poo.3	+	4	2436	c.2436C>T	c.(2434-2436)CCC>CCT	p.P812P		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	503	Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CCCCCAGTCCCTCTCCCAGCG	0.726													13	21					0	0	0.000566183	0	0
C19orf41	126123	broad.mit.edu	37	19	50655908	50655909	+	Splice_Site	DNP	CC	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:50655908_50655909CC>AA	uc002prp.1	-	7	711	c.624_splice	c.e7-1	p.S208_splice		NM_152358	NP_689571	Q6UXV1	IZUM2_HUMAN	hypothetical protein LOC126123 precursor							integral to membrane					0		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00364)|OV - Ovarian serous cystadenocarcinoma(262;0.0052)		ATGTACAAGCCCTGGTCAGAGA	0.396													10	298					0	0	6.4e-05	0	0
KLK7	5650	broad.mit.edu	37	19	51480807	51480807	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:51480807C>T	uc002puo.2	-	6	849	c.747G>A	c.(745-747)ATG>ATA	p.M249I	KLK7_uc002pup.2_Missense_Mutation_p.M249I|KLK7_uc010yco.1_Missense_Mutation_p.M123I|KLK7_uc010eok.2_Missense_Mutation_p.M177I	NM_139277	NP_644806	P49862	KLK7_HUMAN	stratum corneum chymotryptic enzyme	249	Peptidase S1.				epidermis development|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00382)|GBM - Glioblastoma multiforme(134;0.00895)		GATGCTTTTTCATGGTGTCAT	0.358													23	61					0	0	0.000720815	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51917765	51917765	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:51917765C>T	uc002pwo.2	-	9	2236	c.1620G>A	c.(1618-1620)AAG>AAA	p.K540K	SIGLEC10_uc002pwp.2_Silent_p.K482K|SIGLEC10_uc002pwq.2_Silent_p.K387K|SIGLEC10_uc002pwr.2_Silent_p.K445K|SIGLEC10_uc010ycy.1_Silent_p.K355K|SIGLEC10_uc010ycz.1_Silent_p.K397K|SIGLEC10_uc010eow.2_Silent_p.K257K|SIGLEC10_uc002pws.1_Silent_p.K281K	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	540	Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		TGAGTCCCTTCTTATCTGCAC	0.557													15	25					0	0	0.000958276	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004729	52004729	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:52004729C>T	uc002pwx.1	-	1	315	c.259G>A	c.(259-261)GAG>AAG	p.E87K	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	87	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CGAGTCTCCTCCTGCACTGCT	0.572													30	70					0	0	0.00058488	0	0
ZNF649	65251	broad.mit.edu	37	19	52400175	52400175	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:52400175G>A	uc002pxy.2	-	3	340	c.72C>T	c.(70-72)TTC>TTT	p.F24F		NM_023074	NP_075562	Q9BS31	ZN649_HUMAN	zinc finger protein 649	24	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00152)|OV - Ovarian serous cystadenocarcinoma(262;0.0185)		CAGGGCTCAGGAACTGCCACT	0.512													45	94					0	0	0.000781405	0	0
ZNF528	84436	broad.mit.edu	37	19	52919834	52919834	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:52919834C>T	uc002pzh.2	+	7	2155	c.1729C>T	c.(1729-1731)CAT>TAT	p.H577Y	ZNF528_uc002pzi.2_Missense_Mutation_p.H344Y	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	577	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		AAAGAAATCTCATGAGTGTAA	0.433													20	35					0	0	0.00047179	0	0
ZNF534	147658	broad.mit.edu	37	19	52938380	52938380	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:52938380G>A	uc002pzk.2	+	3	289	c.228G>A	c.(226-228)AAG>AAA	p.K76K	ZNF534_uc002pzj.1_Silent_p.K63K|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Silent_p.K63K	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	76	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGAGCAAAAGAGAGATCCCT	0.458													20	34					0	0	0.00188189	0	0
FCAR	2204	broad.mit.edu	37	19	55399406	55399406	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:55399406C>T	uc002qhr.1	+	4	591	c.394C>T	c.(394-396)CGG>TGG	p.R132W	FCAR_uc002qhq.2_Missense_Mutation_p.R132W|FCAR_uc002qhs.1_Intron|FCAR_uc002qht.1_Missense_Mutation_p.R105W|FCAR_uc010esi.1_Intron|FCAR_uc002qhu.1_Intron|FCAR_uc002qhv.1_Missense_Mutation_p.R132W|FCAR_uc002qhw.1_Missense_Mutation_p.R120W|FCAR_uc002qhx.1_Intron|FCAR_uc002qhy.1_Missense_Mutation_p.R120W|FCAR_uc002qhz.1_Missense_Mutation_p.R120W|FCAR_uc002qia.1_Missense_Mutation_p.R23W	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	132	Extracellular (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		CTCTGCAGATCGGGGTCTGGT	0.438													38	52					0	0	0.000781405	0	0
BRSK1	84446	broad.mit.edu	37	19	55820080	55820080	+	Silent	SNP	C	T	T	rs143699775		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:55820080C>T	uc002qkg.2	+	18	2440	c.2163C>T	c.(2161-2163)TCC>TCT	p.S721S	BRSK1_uc002qkf.2_Silent_p.S737S|BRSK1_uc002qkh.2_Silent_p.S416S	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	721					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		ACCAGCCCTCCGTGCAGGCCC	0.348													11	17					0	0	0.00244969	0	0
NLRP9	338321	broad.mit.edu	37	19	56249498	56249498	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:56249498C>T	uc002qly.2	-	1	271	c.243G>A	c.(241-243)AGG>AGA	p.R81R		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	81	DAPIN.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AGAGATCTTTCCTATTGATCT	0.493													184	331					0	0	0.000781405	0	0
NLRP4	147945	broad.mit.edu	37	19	56363457	56363457	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:56363457C>T	uc002qmd.3	+	2	433	c.11C>T	c.(10-12)TCT>TTT	p.S4F		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	4	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ATGGCAGCCTCTTTCTTCTCT	0.398													59	140					0	0	0.000781405	0	0
NLRP8	126205	broad.mit.edu	37	19	56465910	56465910	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:56465910C>T	uc002qmh.2	+	3	557	c.486C>T	c.(484-486)TTC>TTT	p.F162F	NLRP8_uc010etg.2_Silent_p.F162F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	162						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AAAAGTTTTTCCCCATATGGG	0.443													23	34					0	0	0.00047179	0	0
NLRP5	126206	broad.mit.edu	37	19	56539348	56539348	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:56539348C>T	uc002qmj.2	+	7	1749	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F	NLRP5_uc002qmi.2_Silent_p.F564F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	583	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		ACACCTTCTTCCACCTCAGTC	0.532													11	24					0	0	0.00136819	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701811	56701811	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:56701811C>T	uc010ygh.1	-	4	873	c.873G>A	c.(871-873)CTG>CTA	p.L291L		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	291					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGCTCAGATTCAGAGCATCTC	0.517													47	97					0	0	0.000781405	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733161	56733161	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:56733161G>A	uc002qmq.2	-	5	1440	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.S308F|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S425F|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S424F	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	425	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTTCAAGTAGGACTTCTGGGT	0.527													11	24					0	0	0.00185496	0	0
ZNF264	9422	broad.mit.edu	37	19	57723875	57723875	+	Silent	SNP	C	T	T	rs139384482		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:57723875C>T	uc002qob.2	+	4	1823	c.1410C>T	c.(1408-1410)CTC>CTT	p.L470L		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	470	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		GGAAGGACCTCATTCGCCACT	0.537													9	20					0	0	0.000442599	0	0
ZIK1	284307	broad.mit.edu	37	19	58101610	58101610	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:58101610C>T	uc002qpg.2	+	4	528	c.431C>T	c.(430-432)TCC>TTC	p.S144F	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.S89F|ZIK1_uc002qpi.2_Missense_Mutation_p.S131F|ZIK1_uc002qpj.2_Missense_Mutation_p.S41F	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GCAAAGAAATCCTTGAAGAGG	0.463													24	40					0	0	0.00229938	0	0
ZNF606	80095	broad.mit.edu	37	19	58491073	58491073	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr19:58491073G>A	uc002qqw.2	-	7	1593	c.975C>T	c.(973-975)ATC>ATT	p.I325I	ZNF606_uc010yhp.1_Silent_p.I235I	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	325	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		TCTGGTTAAAGATTTGATGGC	0.318													32	55					0	0	0.00058488	0	0
SNTG2	54221	broad.mit.edu	37	2	1093908	1093908	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:1093908G>A	uc002qwq.2	+	3	365	c.237G>A	c.(235-237)CAG>CAA	p.Q79Q	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	79	PDZ.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TCCGCAGACAGCCAGTTGGCG	0.368													54	355					0	0	0.000781405	0	0
TPO	7173	broad.mit.edu	37	2	1500403	1500403	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:1500403G>A	uc002qww.2	+	13	2343	c.2252G>A	c.(2251-2253)GGG>GAG	p.G751E	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.G694E|TPO_uc002qwr.2_Missense_Mutation_p.G751E|TPO_uc002qwx.2_Missense_Mutation_p.G694E|TPO_uc010yio.1_Missense_Mutation_p.G578E|TPO_uc010yip.1_Missense_Mutation_p.G751E|TPO_uc002qwy.1_Missense_Mutation_p.G91E|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	751	Extracellular (Potential).|Sushi.				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GTGGAGAATGGGGACTTTGTG	0.547													53	168					0	0	0.000781405	0	0
TPO	7173	broad.mit.edu	37	2	1500405	1500405	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:1500405G>A	uc002qww.2	+	13	2345	c.2254G>A	c.(2254-2256)GAC>AAC	p.D752N	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.D695N|TPO_uc002qwr.2_Missense_Mutation_p.D752N|TPO_uc002qwx.2_Missense_Mutation_p.D695N|TPO_uc010yio.1_Missense_Mutation_p.D579N|TPO_uc010yip.1_Missense_Mutation_p.D752N|TPO_uc002qwy.1_Missense_Mutation_p.D92N|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	752	Extracellular (Potential).|Sushi.				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGAGAATGGGGACTTTGTGCA	0.547													53	174					0	0	0.000781405	0	0
TPO	7173	broad.mit.edu	37	2	1507821	1507821	+	Missense_Mutation	SNP	G	A	A	rs145974595		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:1507821G>A	uc002qww.2	+	14	2579	c.2488G>A	c.(2488-2490)GAG>AAG	p.E830K	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.E773K|TPO_uc002qwr.2_Missense_Mutation_p.E830K|TPO_uc002qwx.2_Missense_Mutation_p.E773K|TPO_uc010yio.1_Missense_Mutation_p.E657K|TPO_uc010yip.1_Intron|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	830	Extracellular (Potential).|EGF-like; calcium-binding (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGACCCCTACGAGTTAGGAGA	0.562													11	62					0	0	0.000673444	0	0
ROCK2	9475	broad.mit.edu	37	2	11347856	11347856	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:11347856G>A	uc002rbd.1	-	20	2994	c.2545C>T	c.(2545-2547)CGA>TGA	p.R849*		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	849	Potential.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		ACTTACTTTCGAAGTTCAGCA	0.284													7	40					0	0	0.00198382	0	0
GREB1	9687	broad.mit.edu	37	2	11742591	11742591	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:11742591C>T	uc002rbk.1	+	17	2889	c.2589C>T	c.(2587-2589)TCC>TCT	p.S863S	GREB1_uc002rbo.1_Silent_p.S497S	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	863						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		TTATTGAATCCACCCTTTCAG	0.443													39	176					0	0	0.000680045	0	0
LPIN1	23175	broad.mit.edu	37	2	11922626	11922626	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:11922626G>T	uc010yjn.1	+	8	1423	c.1149G>T	c.(1147-1149)AGG>AGT	p.R383S	LPIN1_uc010yjm.1_Missense_Mutation_p.R468S|LPIN1_uc002rbt.2_Missense_Mutation_p.R383S|LPIN1_uc002rbs.2_Missense_Mutation_p.R419S	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	383					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		CTCCTTCCAGGAAAAGAGGTA	0.522													20	61					2.48779e-11	8.82009e-11	0.000878237	1	0
RAD51AP2	729475	broad.mit.edu	37	2	17698599	17698599	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:17698599C>T	uc002rcl.1	-	1	1108	c.1084G>A	c.(1084-1086)GAC>AAC	p.D362N	RAD51AP2_uc010exn.1_Missense_Mutation_p.D353N	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	362										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTTCTAGAGTCTCTTACATTA	0.378													25	65					0	0	0.000720815	0	0
KCNS3	3790	broad.mit.edu	37	2	18112486	18112486	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:18112486C>T	uc002rcv.2	+	3	662	c.211C>T	c.(211-213)CGG>TGG	p.R71W	KCNS3_uc002rcw.2_Missense_Mutation_p.R71W	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	71	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTACTTTGATCGGAATCCCTC	0.468													11	84					0	0	0.000673444	0	0
NT5C1B	93034	broad.mit.edu	37	2	18768844	18768844	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:18768844C>T	uc002rcz.2	-	2	149	c.45G>A	c.(43-45)ATG>ATA	p.M15I	NT5C1B_uc002rcy.2_Missense_Mutation_p.M15I|NT5C1B_uc010exr.2_Missense_Mutation_p.M15I|NT5C1B_uc010yju.1_Missense_Mutation_p.M15I|NT5C1B_uc002rda.2_Missense_Mutation_p.M15I|NT5C1B_uc010yjv.1_Missense_Mutation_p.M15I|NT5C1B_uc010yjw.1_Missense_Mutation_p.M15I|NT5C1B_uc010exs.2_Missense_Mutation_p.M15I|NT5C1B_uc002rdb.1_5'Flank	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	15					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TTGAGGACCTCATTCCAGGCT	0.378													18	151					0	0	0.00047179	0	0
PUM2	23369	broad.mit.edu	37	2	20494229	20494229	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:20494229G>A	uc002rds.1	-	8	1083	c.1060C>T	c.(1060-1062)CCA>TCA	p.P354S	PUM2_uc002rdt.1_Missense_Mutation_p.P354S|PUM2_uc002rdr.2_Missense_Mutation_p.P293S|PUM2_uc010yjy.1_Missense_Mutation_p.P354S|PUM2_uc002rdu.1_Missense_Mutation_p.P354S|PUM2_uc010yjz.1_Missense_Mutation_p.P293S	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	354	Ala-rich.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGTTGGCTGGATACACCCCC	0.517													22	116					0	0	0.00047179	0	0
APOB	338	broad.mit.edu	37	2	21228894	21228894	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:21228894G>A	uc002red.2	-	26	10974	c.10846C>T	c.(10846-10848)CTT>TTT	p.L3616F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3616					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCCTGGCCAAGGTCAGGGAAA	0.493													37	178					0	0	0.00111076	0	0
ITSN2	50618	broad.mit.edu	37	2	24536370	24536370	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:24536370G>A	uc002rfe.2	-	4	405	c.147C>T	c.(145-147)TTC>TTT	p.F49F	ITSN2_uc002rff.2_Silent_p.F49F|ITSN2_uc002rfg.2_Silent_p.F49F|ITSN2_uc010eyd.2_Silent_p.F49F	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	49	EH 1.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGATTGTAGGAAAAAATTAC	0.328													26	57					0	0	0.00178596	0	0
C2orf18	54978	broad.mit.edu	37	2	27001223	27001223	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:27001223C>T	uc002rhp.1	+	6	1036	c.960C>T	c.(958-960)ATC>ATT	p.I320I	C2orf18_uc002rhq.1_Silent_p.I237I|C2orf18_uc010eyo.1_Silent_p.I267I|C2orf18_uc010ylc.1_Silent_p.I173I	NM_017877	NP_060347	Q8N357	CB018_HUMAN	ANT2-binding protein precursor	320	Helical; (Potential).					integral to membrane|lysosomal membrane					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CACTGCAGATCCTTGGCTTCC	0.637													44	121					0	0	0.000781405	0	0
TMEM214	54867	broad.mit.edu	37	2	27257005	27257005	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:27257005G>A	uc002ria.3	+	2	332	c.222G>A	c.(220-222)GAG>GAA	p.E74E	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Silent_p.E74E	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	74						integral to membrane	protein binding				0						AGAATAAGGAGCAGGTCCCAC	0.537													19	71					0	0	0.00121646	0	0
CAD	790	broad.mit.edu	37	2	27445150	27445150	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:27445150C>T	uc002rji.2	+	4	603	c.441C>T	c.(439-441)TCC>TCT	p.S147S	CAD_uc010eyw.2_Silent_p.S147S	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	147	GATase (Glutamine amidotransferase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	AACCTTCATCCCTGCCATTCT	0.542													20	54					0	0	0.000958276	0	0
FOSL2	2355	broad.mit.edu	37	2	28634933	28634933	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:28634933C>T	uc002rma.2	+	4	1408	c.599C>T	c.(598-600)TCG>TTG	p.S200L	FOSL2_uc010ymi.1_Missense_Mutation_p.S161L	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	200					cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					GAGCGCCGATCGCCCCCAGCC	0.642													24	61					0	0	0.00106085	0	0
FAM179A	165186	broad.mit.edu	37	2	29225440	29225440	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:29225440C>T	uc010ezl.2	+	5	817	c.466C>T	c.(466-468)CTG>TTG	p.L156L	FAM179A_uc010ymm.1_Silent_p.L156L	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	156							binding			ovary(3)|skin(1)	4						AGGAGTTCCCCTGCACAGCAC	0.627													8	17					0	0	0.000442599	0	0
CLIP4	79745	broad.mit.edu	37	2	29404519	29404519	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:29404519G>A	uc002rmv.2	+	16	2117	c.1878G>A	c.(1876-1878)GGG>GGA	p.G626G	CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	626										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGCACGAGGGGTCTCAGGTCC	0.567													11	57					0	0	0.000978159	0	0
LCLAT1	253558	broad.mit.edu	37	2	30682518	30682519	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:30682518_30682519CC>AA	uc002rnj.2	+	2	249_250	c.40_41CC>AA	c.(40-42)CCA>AAA	p.P14K	LCLAT1_uc010ymp.1_Intron|LCLAT1_uc002rnk.1_Missense_Mutation_p.P14K|LCLAT1_uc002rnl.2_Intron|LCLAT1_uc010ymq.1_5'UTR	NM_182551	NP_872357	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1 isoform 1	14					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			ovary(2)	2						GCTTCTGAACCCATGGTCAATT	0.431													9	281					0	0	6.4e-05	0	0
CAPN13	92291	broad.mit.edu	37	2	30966436	30966436	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:30966436C>T	uc002rnn.2	-	12	1434	c.1258G>A	c.(1258-1260)GAG>AAG	p.E420K	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	420					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					GGAAATTTCTCCCGGAACCGC	0.478													10	29					0	0	0.000978159	0	0
SPAST	6683	broad.mit.edu	37	2	32372286	32372286	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:32372286G>A	uc002roc.2	+	16	1909	c.1688_splice	c.e16-1	p.E563_splice	SPAST_uc002rod.2_Splice_Site_p.E531_splice	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1						cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					ATGTTTTACAGAACTAAAACC	0.308													20	98					0	0	0.00278032	0	0
NLRC4	58484	broad.mit.edu	37	2	32474890	32474890	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:32474890C>T	uc002roi.2	-	4	2289	c.2043G>A	c.(2041-2043)GGG>GGA	p.G681G	NLRC4_uc002roj.1_Silent_p.G681G|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	681					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TGAATATTTTCCCCAGATATC	0.458													18	87					0	0	0.000958276	0	0
NLRC4	58484	broad.mit.edu	37	2	32476013	32476013	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:32476013G>A	uc002roi.2	-	4	1166	c.920C>T	c.(919-921)GCT>GTT	p.A307V	NLRC4_uc002roj.1_Missense_Mutation_p.A307V|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	307	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TCGGATGAGAGCCTGGGCGCT	0.527													16	47					0	0	0.00074312	0	0
LTBP1	4052	broad.mit.edu	37	2	33518330	33518330	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:33518330G>A	uc002ros.2	+	20	3219	c.3219G>A	c.(3217-3219)CCG>CCA	p.P1073P	LTBP1_uc002rot.2_Silent_p.P747P|LTBP1_uc002rou.2_Silent_p.P746P|LTBP1_uc002rov.2_Silent_p.P693P|LTBP1_uc010ymz.1_Silent_p.P746P|LTBP1_uc010yna.1_Silent_p.P693P|LTBP1_uc010ynb.1_Silent_p.P12P	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1072	EGF-like 8; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CCCGGACTCCGGACCACAAGC	0.423													8	46					0	0	0.000673444	0	0
SULT6B1	391365	broad.mit.edu	37	2	37410652	37410652	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:37410652C>T	uc002rpu.2	-	3	225	c.204G>A	c.(202-204)ATG>ATA	p.M68I	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	106						cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				GAAAGCCTTTCATTCTCTTAA	0.323													13	76					0	0	0.00185496	0	0
Unknown	0	broad.mit.edu	37	2	38709181	38709181	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:38709181G>A	uc002rqu.1	+	1	256	c.189G>A	c.(187-189)AAG>AAA	p.K63K						SubName: Full=RPLP0 protein;																		TGATGCGCAAGGCCATCCGAG	0.572													6	47					0	0	0.00198382	0	0
SLC8A1	6546	broad.mit.edu	37	2	40392089	40392089	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:40392089C>T	uc002rrx.2	-	7	2098	c.2074G>A	c.(2074-2076)GAG>AAG	p.E692K	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.E687K|SLC8A1_uc002rrz.2_Missense_Mutation_p.E679K|SLC8A1_uc002rsa.2_Missense_Mutation_p.E656K|SLC8A1_uc002rsd.3_Missense_Mutation_p.E656K	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	692	Poly-Glu.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TCCTCTTCCTCTTTGCTGGTC	0.473													26	79					0	0	0.00106085	0	0
DYNC2LI1	51626	broad.mit.edu	37	2	44014378	44014379	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:44014378_44014379GG>TT	uc002rtk.2	+	4	316_317	c.220_221GG>TT	c.(220-222)GGG>TTG	p.G74L	DYNC2LI1_uc002rth.2_Missense_Mutation_p.G74L|DYNC2LI1_uc002rti.2_Missense_Mutation_p.G74L|DYNC2LI1_uc002rtj.2_Missense_Mutation_p.G74L|DYNC2LI1_uc002rtl.2_Missense_Mutation_p.G74L|DYNC2LI1_uc010ynz.1_Intron	NM_016008	NP_057092	Q8TCX1	DC2L1_HUMAN	dynein 2 light intermediate chain isoform 1	74						apical part of cell|axonemal dynein complex|cilium axoneme|cytoplasm|microtubule|motile primary cilium	motor activity			ovary(1)	1		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				AAGAGCAAAAGGGCACAACACA	0.366													15	476					0	0	6.4e-05	0	0
DYNC2LI1	51626	broad.mit.edu	37	2	44016839	44016840	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:44016839_44016840CC>AA	uc002rtk.2	+	5	395_396	c.299_300CC>AA	c.(298-300)CCC>CAA	p.P100Q	DYNC2LI1_uc002rth.2_Missense_Mutation_p.P100Q|DYNC2LI1_uc002rti.2_Missense_Mutation_p.P100Q|DYNC2LI1_uc002rtj.2_Missense_Mutation_p.P100Q|DYNC2LI1_uc002rtl.2_Missense_Mutation_p.P100Q|DYNC2LI1_uc010ynz.1_5'UTR	NM_016008	NP_057092	Q8TCX1	DC2L1_HUMAN	dynein 2 light intermediate chain isoform 1	100						apical part of cell|axonemal dynein complex|cilium axoneme|cytoplasm|microtubule|motile primary cilium	motor activity			ovary(1)	1		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				ATCAGCATACCCATCACAGGTG	0.421													11	360					0	0	6.4e-05	0	0
SLC3A1	6519	broad.mit.edu	37	2	44508548	44508548	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:44508548C>T	uc002ruc.3	+	3	711	c.633C>T	c.(631-633)TTC>TTT	p.F211F	SLC3A1_uc002rty.2_Silent_p.F211F|SLC3A1_uc002rtz.2_Silent_p.F211F|SLC3A1_uc002rua.2_Silent_p.F211F|SLC3A1_uc002rub.2_Silent_p.F211F	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	211	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	TCATCGATTTCATACCAAACC	0.303													10	56					0	0	0.000673444	0	0
SLC3A1	6519	broad.mit.edu	37	2	44527121	44527121	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:44527121G>A	uc002ruc.3	+	5	981	c.903G>A	c.(901-903)CGG>CGA	p.R301R	SLC3A1_uc002rty.2_Silent_p.R301R|SLC3A1_uc002rtz.2_Silent_p.R301R|SLC3A1_uc002rua.2_Silent_p.R301R|SLC3A1_uc002rub.2_Silent_p.R301R|SLC3A1_uc002rud.3_Silent_p.R23R	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	301	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	AAATTTTACGGTTCTGGCTCA	0.368													21	147					0	0	0.00047179	0	0
EPAS1	2034	broad.mit.edu	37	2	46603707	46603707	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:46603707C>T	uc002ruv.2	+	9	1552	c.1064C>T	c.(1063-1065)TCC>TTC	p.S355F		NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	355					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			GTGGTGTTCTCCATGGACCAG	0.483													17	168					0	0	0.00121646	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48809019	48809019	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:48809019C>T	uc010yol.1	+	1	1294	c.1247C>T	c.(1246-1248)TCC>TTC	p.S416F	STON1_uc002rwo.3_Missense_Mutation_p.S416F|STON1_uc010fbm.2_Missense_Mutation_p.S416F|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.S416F|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.S416F	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	416					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAAGAAATTTCCTTGGAAATT	0.388													13	96					0	0	0.00185496	0	0
FSHR	2492	broad.mit.edu	37	2	49190896	49190896	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:49190896G>A	uc002rww.2	-	10	1138	c.1064C>T	c.(1063-1065)CCA>CTA	p.P355L	FSHR_uc002rwx.2_Missense_Mutation_p.P293L|FSHR_uc010fbn.2_Missense_Mutation_p.P329L	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	355	Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	ATCTTCACATGGGTTGAATGC	0.453									Gonadal_Dysgenesis_46_XX				17	47					0	0	0.000422831	0	0
NRXN1	9378	broad.mit.edu	37	2	50733674	50733674	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:50733674T>A	uc010fbq.2	-	13	4053	c.2576A>T	c.(2575-2577)AAA>ATA	p.K859I	NRXN1_uc002rxb.3_Missense_Mutation_p.K491I|NRXN1_uc002rxe.3_Missense_Mutation_p.K819I|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CTTTAAACTTTTTCCACGCCG	0.443													7	20					0	0	0.00198382	0	0
NRXN1	9378	broad.mit.edu	37	2	51254950	51254950	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:51254950G>A	uc010fbq.2	-	2	1939	c.462C>T	c.(460-462)TTC>TTT	p.F154F	NRXN1_uc002rxe.3_Silent_p.F154F|NRXN1_uc002rxd.1_Silent_p.F154F	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GCCCCCCGACGAAAAGGCCGC	0.662													6	16					0	0	0.00116845	0	0
PELI1	57162	broad.mit.edu	37	2	64327602	64327602	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:64327602G>A	uc002scs.3	-	3	4272	c.233C>T	c.(232-234)TCA>TTA	p.S78L	PELI1_uc002sct.3_Missense_Mutation_p.S78L|PELI1_uc002scr.3_5'Flank	NM_020651	NP_065702	Q96FA3	PELI1_HUMAN	pellino protein	78					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol				ovary(1)	1						TAAAGTATATGATATGCTATG	0.333													47	89					0	0	0.000781405	0	0
PROKR1	10887	broad.mit.edu	37	2	68882048	68882048	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:68882048G>A	uc010yqj.1	+	2	522	c.522G>A	c.(520-522)ATG>ATA	p.M174I	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	174	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						GACCACGGATGAAGTGCCAAA	0.532													24	55					0	0	0.00047179	0	0
ANTXR1	84168	broad.mit.edu	37	2	69409715	69409715	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:69409715G>A	uc002sfg.2	+	16	1632	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	426	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						GCAGGAATATGAATTCCCTGA	0.458									Familial_Infantile_Hemangioma				19	100					0	0	0.00121646	0	0
ADD2	119	broad.mit.edu	37	2	70931582	70931582	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:70931582C>T	uc002sgz.2	-	4	658	c.193G>A	c.(193-195)GAG>AAG	p.E65K	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.E65K|ADD2_uc002sha.2_Missense_Mutation_p.E65K|ADD2_uc002sgx.2_Missense_Mutation_p.E65K|ADD2_uc010fdt.1_Missense_Mutation_p.E65K|ADD2_uc002shc.1_Missense_Mutation_p.E65K|ADD2_uc002shd.1_Missense_Mutation_p.E65K|ADD2_uc010fdu.1_Missense_Mutation_p.E81K	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	65					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TCCAGCTCCTCCCTGAAAGAC	0.607													8	43					0	0	0.000274275	0	0
CD207	50489	broad.mit.edu	37	2	71060879	71060879	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:71060879G>A	uc002shg.2	-	3	510	c.463C>T	c.(463-465)CCA>TCA	p.P155S		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	155	Potential.|Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						TTTAACTCTGGGATTTGGGCA	0.438													11	62					0	0	0.000978159	0	0
MCEE	84693	broad.mit.edu	37	2	71357326	71357326	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:71357326T>C	uc002shs.2	-	1	69	c.24A>G	c.(22-24)GCA>GCG	p.A8A	MPHOSPH10_uc010feb.1_5'Flank|MPHOSPH10_uc002sht.1_5'Flank	NM_032601	NP_115990	Q96PE7	MCEE_HUMAN	methylmalonyl CoA epimerase precursor	8					fatty acid beta-oxidation|L-methylmalonyl-CoA metabolic process	mitochondrial matrix	methylmalonyl-CoA epimerase activity			ovary(1)	1						CATTCGCGGCTGCAGCCTTCA	0.697													6	17					0	0	0.00198382	0	0
DYSF	8291	broad.mit.edu	37	2	71883420	71883420	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:71883420G>A	uc002sie.2	+	42	5014	c.4638G>A	c.(4636-4638)AAG>AAA	p.K1546K	DYSF_uc010feg.2_Silent_p.K1577K|DYSF_uc010feh.2_Silent_p.K1553K|DYSF_uc002sig.3_Silent_p.K1532K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.K1567K|DYSF_uc010fef.2_Silent_p.K1584K|DYSF_uc010fei.2_Silent_p.K1563K|DYSF_uc010fek.2_Silent_p.K1564K|DYSF_uc010fej.2_Silent_p.K1554K|DYSF_uc010fel.2_Silent_p.K1533K|DYSF_uc010feo.2_Silent_p.K1578K|DYSF_uc010fem.2_Silent_p.K1568K|DYSF_uc010fen.2_Silent_p.K1585K|DYSF_uc002sif.2_Silent_p.K1547K|DYSF_uc010yqy.1_Silent_p.K427K|DYSF_uc010yqz.1_Silent_p.K307K	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1546	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GTGAATTTAAGGTAAATCCTC	0.512													37	175					0	0	0.00128727	0	0
ALMS1	7840	broad.mit.edu	37	2	73799546	73799546	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:73799546C>T	uc002sje.1	+	18	10656	c.10545C>T	c.(10543-10545)TTC>TTT	p.F3515F	ALMS1_uc002sjf.1_Silent_p.F3471F|ALMS1_uc002sjg.2_Silent_p.F2901F|ALMS1_uc002sjh.1_Silent_p.F2901F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3513					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GGAAAGATTTCTTTCAGCATC	0.373													7	36					0	0	0.00198382	0	0
C2orf78	388960	broad.mit.edu	37	2	74042871	74042871	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:74042871C>T	uc002sjr.1	+	3	1642	c.1521C>T	c.(1519-1521)TCC>TCT	p.S507S		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	507										ovary(2)	2						ATAAAGCTTCCGAGCCTATCC	0.473													9	15					0	0	0.000274275	0	0
ACTG2	72	broad.mit.edu	37	2	74136191	74136191	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:74136191G>A	uc002sjw.2	+	5	498	c.376G>A	c.(376-378)GAA>AAA	p.E126K	ACTG2_uc010fey.2_Missense_Mutation_p.E126K|ACTG2_uc010yrn.1_Missense_Mutation_p.E83K	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	126					muscle contraction	cytoskeleton|cytosol	ATP binding				0						GATCATGTTTGAAACCTTCAA	0.438													36	81					0	0	0.00222228	0	0
DCTN1	1639	broad.mit.edu	37	2	74598249	74598249	+	Silent	SNP	G	A	A	rs13017086		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:74598249G>A	uc002skx.2	-	9	1011	c.700C>T	c.(700-702)CTG>TTG	p.L234L	DCTN1_uc002skv.2_Silent_p.L100L|DCTN1_uc002sku.2_Silent_p.L100L|DCTN1_uc002skw.1_Silent_p.L210L|DCTN1_uc010ffd.2_Silent_p.L214L|DCTN1_uc002sky.2_Silent_p.L197L	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	234	Potential.				cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						TTCAGTCTCAGGGTCTCTAGT	0.547													74	322					0	0	0.000781405	0	0
TACR1	6869	broad.mit.edu	37	2	75425696	75425696	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:75425696G>A	uc002sng.2	-	1	950	c.365C>T	c.(364-366)TCC>TTC	p.S122F	TACR1_uc002snh.2_Missense_Mutation_p.S122F	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	122	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	AGCCGTCATGGAGTAGATACT	0.502													28	75					0	0	0.001512	0	0
MRPL19	9801	broad.mit.edu	37	2	75882273	75882273	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:75882273T>C	uc002snl.2	+	6	766	c.741T>C	c.(739-741)CTT>CTC	p.L247L	MRPL19_uc002snm.1_Silent_p.L247L	NM_014763	NP_055578	P49406	RM19_HUMAN	mitochondrial ribosomal protein L19 precursor	247					translation	mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome				0						GATTTGATCTTTGTTTAACTG	0.348													13	29					0	0	0.000422831	0	0
REG1P	5969	broad.mit.edu	37	2	79363185	79363185	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:79363185C>T	uc002soa.1	-	4		c.1129G>A			REG1P_uc002sob.1_RNA|REG1P_uc002soc.1_RNA					Homo sapiens mRNA for Reg-related sequence derived peptide-1, complete cds.												0						ACCCACTACTCCACTGATAAT	0.517													5	10					0	0	0.00198382	0	0
REG3A	5068	broad.mit.edu	37	2	79385792	79385792	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:79385792G>A	uc002sod.1	-	2	435	c.180C>T	c.(178-180)TCC>TCT	p.S60S	REG3A_uc002soe.1_Silent_p.S60S|REG3A_uc002sof.1_Silent_p.S60S	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	60	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						CATCTGTCCAGGATTTTGGTG	0.547													20	30					0	0	0.000878237	0	0
CTNNA2	1496	broad.mit.edu	37	2	80874990	80874990	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:80874990C>T	uc010ysh.1	+	18	2860	c.2855C>T	c.(2854-2856)TCC>TTC	p.S952F	CTNNA2_uc010yse.1_Missense_Mutation_p.S904F|CTNNA2_uc010ysf.1_Missense_Mutation_p.S904F|CTNNA2_uc010ysg.1_Missense_Mutation_p.S859F|CTNNA2_uc010ysi.1_Missense_Mutation_p.S536F|CTNNA2_uc010ysj.1_Missense_Mutation_p.S233F	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	952					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						GCAATGGATTCCTTCTAGGAC	0.338													19	48					0	0	0.00074312	0	0
RNF103	7844	broad.mit.edu	37	2	86831623	86831623	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:86831623G>A	uc002srn.2	-	4	2370	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	VPS24_uc010ytl.1_Intron|RNF103_uc002srm.2_Silent_p.F328F|uc002sro.2_Intron	NM_005667	NP_005658	O00237	RN103_HUMAN	ring finger protein 103	467					central nervous system development|ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(1)	1						CAATCGGGTGGAAGAGGTAGC	0.448													11	41					0	0	0.00136819	0	0
SMYD1	150572	broad.mit.edu	37	2	88405880	88405880	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:88405880G>A	uc002ssr.2	+	8	1020	c.1018G>A	c.(1018-1020)GAG>AAG	p.E340K	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.E36K	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	340					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						GGAGAAGCAGGAGCCAGTGTT	0.522													14	63					0	0	0.000422831	0	0
C2orf51	200523	broad.mit.edu	37	2	88828788	88828788	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:88828788C>T	uc002stb.1	+	4	481	c.339C>T	c.(337-339)TCC>TCT	p.S113S		NM_152670	NP_689883	Q96LM6	TSC21_HUMAN	chromosome 2 open reading frame 51	113						nucleus				skin(1)	1						ATCCAGCTTCCCACGATCTGC	0.602													10	78					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	2	89160118	89160118	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:89160118C>T	uc010ytr.1	-	239		c.9672G>A			uc002sti.1_RNA|uc002stj.1_Intron					Parts of antibodies, mostly variable regions.																		GAAGGTGATCCACAGTGTTAA	0.388													31	92					0	0	0.000692331	0	0
Unknown	0	broad.mit.edu	37	2	89309564	89309564	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:89309564G>A	uc010ytr.1	-	74		c.6783C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TTCTGTCCCAGATCCACTGCC	0.483													40	64					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	2	89399463	89399463	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:89399463G>A	uc010ytr.1	-	46		c.4982C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ACTTTGATGGGACCCCACTTT	0.483													36	66					0	0	0.00148497	0	0
Unknown	0	broad.mit.edu	37	2	89476122	89476122	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:89476122C>T	uc010ytr.1	-	28		c.3359G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CCCACTGGATCCTGAAATAAT	0.408													9	49					0	0	0.000274275	0	0
ASTL	431705	broad.mit.edu	37	2	96799745	96799745	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:96799745C>T	uc010yui.1	-	4	296	c.296G>A	c.(295-297)AGT>AAT	p.S99N		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	99					proteolysis		metalloendopeptidase activity|zinc ion binding				0						CACGACACCACTACCACCCAT	0.612													9	45					0	0	0.00136819	0	0
ARID5A	10865	broad.mit.edu	37	2	97217942	97217942	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:97217942C>T	uc002swe.2	+	7	1777	c.1677C>T	c.(1675-1677)TTC>TTT	p.F559F	ARID5A_uc010yuq.1_Silent_p.F507F|ARID5A_uc002swf.2_Silent_p.F395F|ARID5A_uc002swg.2_Silent_p.F507F	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	559					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						CAACGTCCTTCGACAGTGCCC	0.667													38	116					0	0	0.00170553	0	0
KIAA1310	55683	broad.mit.edu	37	2	97267445	97267445	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:97267445G>A	uc002swn.3	-	20	2697	c.2551C>T	c.(2551-2553)CCT>TCT	p.P851S	KIAA1310_uc002swh.3_Missense_Mutation_p.P737S|KIAA1310_uc002swi.3_Missense_Mutation_p.P778S|KIAA1310_uc002swj.3_RNA|KIAA1310_uc002swk.3_Missense_Mutation_p.P764S|KIAA1310_uc010fhz.2_Missense_Mutation_p.P671S|KIAA1310_uc002swl.3_Missense_Mutation_p.P750S|KIAA1310_uc002swm.3_RNA|KIAA1310_uc010yur.1_Missense_Mutation_p.P645S|KIAA1310_uc002swo.2_Missense_Mutation_p.P199S	NM_001115016	NP_001108488	Q9P2N6	K1310_HUMAN	hypothetical protein LOC55683 isoform a	877											0						GAGCCCATAGGGCTCAGTGTA	0.562													9	20					0	0	0.000673444	0	0
SEMA4C	54910	broad.mit.edu	37	2	97527359	97527359	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:97527359G>A	uc002sxh.3	-	14	1789	c.1629C>T	c.(1627-1629)ACC>ACT	p.T543T	SEMA4C_uc002sxf.3_Silent_p.T43T|SEMA4C_uc002sxe.2_Silent_p.T43T|SEMA4C_uc002sxg.3_Silent_p.T596T	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	543	PSI.|Extracellular (Potential).				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						AAGTGTCCGAGGTCATCACAT	0.562													41	139					0	0	0.000781405	0	0
LIPT1	51601	broad.mit.edu	37	2	99778604	99778604	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:99778604A>G	uc002szm.3	+	4	524	c.184A>G	c.(184-186)ATT>GTT	p.I62V	MRPL30_uc002szl.1_Intron|LIPT1_uc002szn.3_Missense_Mutation_p.I62V|LIPT1_uc002szo.3_Missense_Mutation_p.I62V|LIPT1_uc002szp.3_Missense_Mutation_p.I62V|LIPT1_uc002szq.3_Missense_Mutation_p.I62V|MRPL30_uc002szr.2_Intron	NM_145198	NP_660199	Q9Y234	LIPT_HUMAN	lipoyltransferase 1 precursor	62					lipid metabolic process|protein lipoylation	mitochondrion	acyltransferase activity				0					Lipoic Acid(DB00166)	AGGCAAACCAATTCTATTCTT	0.373													36	116					0	0	0.00195071	0	0
AFF3	3899	broad.mit.edu	37	2	100185362	100185362	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:100185362A>T	uc002tag.2	-	18	3170	c.2934T>A	c.(2932-2934)GAT>GAA	p.D978E	AFF3_uc002taf.2_Missense_Mutation_p.D1003E	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	978					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GCATAAAATAATCGGCACTGC	0.373													34	118					0	0	0.00283554	0	0
IL1R1	3554	broad.mit.edu	37	2	102781284	102781284	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:102781284G>A	uc002tbq.2	+	4	430	c.112G>A	c.(112-114)GAA>AAA	p.E38K	IL1R1_uc010fix.2_Missense_Mutation_p.E38K|IL1R1_uc002tbp.2_Missense_Mutation_p.E38K|IL1R1_uc002tbr.2_Missense_Mutation_p.E38K	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	38	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	ATCTGCAAATGAAATTGATGT	0.363													20	41					0	0	0.00188189	0	0
IL1R1	3554	broad.mit.edu	37	2	102792865	102792865	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:102792865C>T	uc002tbq.2	+	12	1674	c.1356C>T	c.(1354-1356)ATC>ATT	p.I452I	IL1R1_uc010fix.2_Silent_p.I421I|IL1R1_uc002tbr.2_Silent_p.I452I	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	452	TIR.|Cytoplasmic (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	GACTGATTATCATTTTAGTCA	0.353													10	70					0	0	0.000978159	0	0
IL18RAP	8807	broad.mit.edu	37	2	103061706	103061706	+	Silent	SNP	C	T	T	rs141693630		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:103061706C>T	uc002tbx.2	+	9	1462	c.978C>T	c.(976-978)GTC>GTT	p.V326V	IL18RAP_uc010fiz.2_Silent_p.V184V	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	326	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TGGAAAAAGTCACTCAGCGTG	0.393													30	66					0	0	0.00209593	0	0
IL18RAP	8807	broad.mit.edu	37	2	103067330	103067330	+	Silent	SNP	C	T	T	rs140183707	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:103067330C>T	uc002tbx.2	+	11	1717	c.1233C>T	c.(1231-1233)TTC>TTT	p.F411F	IL18RAP_uc010fiz.2_Silent_p.F269F	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	411	TIR.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TTGATGCTTTCGTATCCTATG	0.343													43	115					0	0	0.000781405	0	0
SLC9A4	389015	broad.mit.edu	37	2	103095638	103095638	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:103095638C>T	uc002tbz.3	+	2	1054	c.597C>T	c.(595-597)TTC>TTT	p.F199F		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	199	Helical; Name=F/M5A; (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						ACCTGCTGTTCGGCAGCCTGA	0.617													7	21					0	0	0.00198382	0	0
SLC9A4	389015	broad.mit.edu	37	2	103136335	103136335	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:103136335G>A	uc002tbz.3	+	9	2196	c.1739G>A	c.(1738-1740)GGA>GAA	p.G580E		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	580	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						AGGATACAAGGAATCAAAAGA	0.453													10	30					0	0	0.00136819	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460166	107460166	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:107460166G>A	uc002tdq.2	-	2	387	c.268C>T	c.(268-270)CAT>TAT	p.H90Y	ST6GAL2_uc002tdr.2_Missense_Mutation_p.H90Y|ST6GAL2_uc002tds.3_Missense_Mutation_p.H90Y	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	90	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GGCCCCGCATGAAAGGAACCG	0.627													26	55					0	0	0.001512	0	0
RGPD4	285190	broad.mit.edu	37	2	108496519	108496519	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:108496519C>T	uc010ywk.1	+	21	5102	c.5020C>T	c.(5020-5022)CGG>TGG	p.R1674W	RGPD4_uc002tdu.2_Missense_Mutation_p.R861W|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1674					intracellular transport		binding			skin(2)	2						CGGCCTGCTTCGGGAAGCAGA	0.463													57	162					0	0	0.000781405	0	0
RANBP2	5903	broad.mit.edu	37	2	109379696	109379696	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:109379696C>T	uc002tem.3	+	20	2827	c.2701C>T	c.(2701-2703)CCA>TCA	p.P901S		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	901					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						CTTTTAGGGCCCAGTCTATGG	0.393													11	25					0	0	0.00136819	0	0
NPHP1	4867	broad.mit.edu	37	2	110919263	110919263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:110919263G>A	uc002tfn.3	-	10	1130	c.1036C>T	c.(1036-1038)CGA>TGA	p.R346*	NPHP1_uc002tfm.3_Nonsense_Mutation_p.R291*|NPHP1_uc002tfl.3_Nonsense_Mutation_p.R347*|NPHP1_uc002tfo.3_Nonsense_Mutation_p.R228*|NPHP1_uc010ywx.1_Nonsense_Mutation_p.R290*|NPHP1_uc010fjv.1_Nonsense_Mutation_p.R290*	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	346					actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						TAATTTGCTCGAAATTGATTC	0.353													9	32					0	0	0.000442599	0	0
BUB1	699	broad.mit.edu	37	2	111399377	111399377	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:111399377G>A	uc002tgc.2	-	21	2579	c.2467C>T	c.(2467-2469)CAA>TAA	p.Q823*	BUB1_uc010yxh.1_Nonsense_Mutation_p.Q803*|BUB1_uc010fkb.2_Nonsense_Mutation_p.Q823*	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	823	Protein kinase.				apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		GCAGGCTTTTGGACCTGCAAA	0.403													50	146					0	0	0.000781405	0	0
MERTK	10461	broad.mit.edu	37	2	112761530	112761530	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:112761530C>T	uc002thk.1	+	13	1958	c.1836C>T	c.(1834-1836)ACC>ACT	p.T612T	MERTK_uc002thl.1_Silent_p.T436T	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	612	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						AAGATGGGACCTCTCTGAAAG	0.468													23	65					0	0	0.0024448	0	0
ZC3H6	376940	broad.mit.edu	37	2	113088891	113088891	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:113088891C>T	uc002thq.1	+	12	2790	c.2396C>T	c.(2395-2397)TCT>TTT	p.S799F		NM_198581	NP_940983	P61129	ZC3H6_HUMAN	zinc finger CCCH-type domain containing 6	799							nucleic acid binding|zinc ion binding			ovary(3)|central_nervous_system(1)	4						ATAGGCTCTTCTGTTGGTGGA	0.448													31	87					0	0	0.00178596	0	0
TTL	150465	broad.mit.edu	37	2	113243522	113243522	+	Silent	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:113243522G>T	uc002thu.2	+	2	365	c.186G>T	c.(184-186)GTG>GTT	p.V62V		NM_153712	NP_714923	Q8NG68	TTL_HUMAN	tubulin tyrosine ligase	62	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity				0		Ovarian(717;0.024)		BRCA - Breast invasive adenocarcinoma(221;6.17e-07)|STAD - Stomach adenocarcinoma(1183;0.00644)		TACAGTTGGTGAATTACTACA	0.483			T	ETV6	ALL								24	138					1.77063e-15	6.29007e-15	0.000878237	1	0
IL1F6	27179	broad.mit.edu	37	2	113765525	113765525	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:113765525C>T	uc010yxr.1	+	4	381	c.381C>T	c.(379-381)TTC>TTT	p.F127F		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	127					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						CTGGCTGGTTCATCGCTGTCA	0.507													27	46					0	0	0.00106085	0	0
PSD4	23550	broad.mit.edu	37	2	113943511	113943511	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:113943511C>T	uc002tjc.2	+	5	1490	c.1307C>T	c.(1306-1308)CCC>CTC	p.P436L	PSD4_uc002tjd.2_Missense_Mutation_p.P57L|PSD4_uc002tje.2_Intron|PSD4_uc002tjf.2_Missense_Mutation_p.P57L	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	436					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCCCCCTGCCCCTGGAGGAGC	0.647													4	15					0	0	0.000602214	0	0
PSD4	23550	broad.mit.edu	37	2	113956440	113956440	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:113956440G>A	uc002tjc.2	+	15	2931	c.2748G>A	c.(2746-2748)GTG>GTA	p.V916V	PSD4_uc002tjd.2_Silent_p.V536V|PSD4_uc002tje.2_Silent_p.V886V|PSD4_uc002tjf.2_Silent_p.V537V|PSD4_uc002tjg.2_Silent_p.V82V|PSD4_uc010yxs.1_Silent_p.V146V|PSD4_uc002tjh.2_Silent_p.V37V	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	916					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						TCCTGCCCGTGGGCCCCGCCC	0.721													4	11					0	0	0.00024832	0	0
STEAP3	55240	broad.mit.edu	37	2	120003247	120003247	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:120003247C>T	uc002tlp.2	+	3	332	c.175C>T	c.(175-177)CGC>TGC	p.R59C	STEAP3_uc002tlq.2_Missense_Mutation_p.R69C|STEAP3_uc002tlr.2_Missense_Mutation_p.R59C|STEAP3_uc010fle.2_Missense_Mutation_p.R59C	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	59	Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						GGTGGGGAGCCGCAACCCCAA	0.632													18	34					0	0	0.000958276	0	0
STEAP3	55240	broad.mit.edu	37	2	120005343	120005343	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:120005343C>T	uc002tlp.2	+	4	738	c.581C>T	c.(580-582)TCC>TTC	p.S194F	STEAP3_uc002tlq.2_Missense_Mutation_p.S204F|STEAP3_uc002tlr.2_Missense_Mutation_p.S194F|STEAP3_uc010fle.2_Missense_Mutation_p.S194F	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	194	Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						GACATGGGATCCCTGGCGTCA	0.667													6	22					0	0	0.00116845	0	0
SCTR	6344	broad.mit.edu	37	2	120236455	120236455	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:120236455G>A	uc002tma.2	-	3	459	c.233C>T	c.(232-234)TCT>TTT	p.S78F	SCTR_uc002tlz.2_5'UTR	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	78	Extracellular (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	CGGCACAGAAGAGGGCCAGCA	0.607													7	64					0	0	0.000157383	0	0
PTPN4	5775	broad.mit.edu	37	2	120620206	120620206	+	Missense_Mutation	SNP	C	T	T	rs145726868	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:120620206C>T	uc002tmf.1	+	3	1004	c.233C>T	c.(232-234)TCC>TTC	p.S78F		NM_002830	NP_002821	P29074	PTN4_HUMAN	protein tyrosine phosphatase, non-receptor type	78	FERM.					cytoplasm|cytoskeleton|internal side of plasma membrane	cytoskeletal protein binding|non-membrane spanning protein tyrosine phosphatase activity			ovary(2)	2					Alendronate(DB00630)	GCTGATGATTCCACAGATAAC	0.373													12	46					0	0	0.00136819	0	0
TFCP2L1	29842	broad.mit.edu	37	2	122038784	122038784	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:122038784G>A	uc002tmx.2	-	2	219	c.126C>T	c.(124-126)GCC>GCT	p.A42A	TFCP2L1_uc010flr.2_Silent_p.A42A	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	42	Mediate transcriptional repression.				female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					GTGGCAGGCGGGCCTCGTTCT	0.607													43	170					0	0	0.000781405	0	0
CLASP1	23332	broad.mit.edu	37	2	122227479	122227479	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:122227479G>A	uc002tnc.2	-	9	1160	c.770C>T	c.(769-771)TCT>TTT	p.S257F	CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.S257F|CLASP1_uc010yza.1_Missense_Mutation_p.S257F|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tng.1_Missense_Mutation_p.S257F	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	257					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					GGATGATGTAGAACTAGCAGA	0.443													20	69					0	0	0.00047179	0	0
ERCC3	2071	broad.mit.edu	37	2	128047394	128047394	+	Silent	SNP	G	A	A	rs114994654	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:128047394G>A	uc002toh.1	-	5	623	c.528C>T	c.(526-528)TTC>TTT	p.F176F	ERCC3_uc002toe.1_5'UTR|ERCC3_uc002tof.1_Silent_p.F112F|ERCC3_uc002tog.1_Silent_p.F112F|ERCC3_uc010flx.1_5'UTR|ERCC3_uc010yzh.1_RNA|ERCC3_uc010fly.2_3'UTR	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	176					cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		AACTTTCAACGAAGTATCTGC	0.512			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				39	109					0	0	0.000781405	0	0
SAP130	79595	broad.mit.edu	37	2	128699646	128699646	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:128699646C>T	uc002tpp.2	-	20	3213	c.3081G>A	c.(3079-3081)CTG>CTA	p.L1027L	SAP130_uc002tpn.2_Silent_p.L787L|SAP130_uc002tpo.2_Silent_p.L807L|SAP130_uc010fmd.2_Silent_p.L1062L	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	1027	Interactions with SIN3A and HDAC1.				histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		TAAGCAGCTTCAGGACACGGT	0.403													25	79					0	0	0.000720815	0	0
UGGT1	56886	broad.mit.edu	37	2	128947294	128947294	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:128947294C>T	uc002tps.2	+	41	4824	c.4646C>T	c.(4645-4647)CCT>CTT	p.P1549L	UGGT1_uc002tpr.2_Missense_Mutation_p.P1525L	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	1549	Glucosyltransferase (By similarity).				'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TCCTTAGGTCCTCAGAAACGT	0.358													9	27					0	0	0.000978159	0	0
SMPD4	55627	broad.mit.edu	37	2	130930381	130930381	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:130930381G>A	uc002tqq.1	-	6	1070	c.550C>T	c.(550-552)CTT>TTT	p.L184F	SMPD4_uc002tqp.1_5'UTR|SMPD4_uc010yzy.1_Intron|SMPD4_uc010yzz.1_Intron|SMPD4_uc002tqr.1_Missense_Mutation_p.L184F|SMPD4_uc002tqs.1_Missense_Mutation_p.L52F|SMPD4_uc002tqt.1_Missense_Mutation_p.L62F|SMPD4_uc010zaa.1_Missense_Mutation_p.L71F|SMPD4_uc010zab.1_Missense_Mutation_p.L111F|SMPD4_uc010zac.1_Intron|SMPD4_uc010zad.1_Intron	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	145					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	TTCAGACCAAGGCCCCCAGTA	0.607													11	21					0	0	0.000978159	0	0
FAM123C	205147	broad.mit.edu	37	2	131520353	131520354	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:131520353_131520354GG>AA	uc002trw.2	+	2	898_899	c.708_709GG>AA	c.(706-711)GAGGAC>GAAAAC	p.D237N	FAM123C_uc010fmv.2_Missense_Mutation_p.D237N|FAM123C_uc010fms.1_Missense_Mutation_p.D237N|FAM123C_uc010fmt.1_Missense_Mutation_p.D237N|FAM123C_uc010fmu.1_Missense_Mutation_p.D237N	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	237										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CCCTGTGTGAGGACGTGGCCTC	0.663													21	122					0	0	6.4e-05	0	0
FAM123C	205147	broad.mit.edu	37	2	131522187	131522187	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:131522187G>A	uc002trw.2	+	2	2732	c.2542G>A	c.(2542-2544)GAA>AAA	p.E848K	FAM123C_uc010fmv.2_Missense_Mutation_p.E848K|FAM123C_uc010fms.1_Missense_Mutation_p.E848K|FAM123C_uc010fmt.1_Missense_Mutation_p.E848K|FAM123C_uc010fmu.1_Missense_Mutation_p.E848K	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	848										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		TGGCCAGCCAGAAGTGGGGGC	0.622													9	24					0	0	0.000978159	0	0
POTEE	445582	broad.mit.edu	37	2	132021872	132021872	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:132021872C>T	uc002tsn.2	+	15	2896	c.2844C>T	c.(2842-2844)ATC>ATT	p.I948I	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.I548I|POTEE_uc002tsl.2_Silent_p.I530I|POTEE_uc010fmy.1_Silent_p.I412I	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	948	Actin-like.						ATP binding				0						GCCAGGTCATCACCATCGGCA	0.607													8	108					0	0	0.00074312	0	0
NCRNA00164	554226	broad.mit.edu	37	2	132905757	132905757	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:132905757C>T	uc002tti.3	-	7		c.1134G>A			NCRNA00164_uc002ttj.3_RNA	NR_027019				Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:5169389), with apparent retained intron.												0						GGTGTTCTTTCCGCCAAGGGT	0.433													13	29					0	0	0.000422831	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540977	133540977	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:133540977C>T	uc002ttp.2	-	14	3781	c.3407G>A	c.(3406-3408)AGT>AAT	p.S1136N	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1136							protein binding				0						CTCATGAGCACTTTGACAACC	0.502													34	135					0	0	0.00170553	0	0
NCKAP5	344148	broad.mit.edu	37	2	133543266	133543266	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:133543266C>T	uc002ttp.2	-	14	1492	c.1118G>A	c.(1117-1119)AGG>AAG	p.R373K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	373	Ser-rich.						protein binding				0						AATACTTAGCCTTTTATCCCA	0.378													14	26					0	0	0.000422831	0	0
ACMSD	130013	broad.mit.edu	37	2	135621039	135621039	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:135621039C>T	uc002ttz.2	+	5	391	c.324C>T	c.(322-324)CCC>CCT	p.P108P	ACMSD_uc002tua.2_Silent_p.P50P	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	108					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		TGAGCTACCCCAGGAGGTTCG	0.587													31	76					0	0	0.00178596	0	0
YSK4	80122	broad.mit.edu	37	2	135745789	135745789	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:135745789C>T	uc002tue.1	-	7	684	c.653G>A	c.(652-654)CGA>CAA	p.R218Q	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.R105Q|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_5'UTR|YSK4_uc002tui.3_Missense_Mutation_p.R235Q	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	218							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GACACCAGATCGCGTGGGCAA	0.403													51	212					0	0	0.000781405	0	0
YSK4	80122	broad.mit.edu	37	2	135779349	135779349	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:135779349G>A	uc002tue.1	-	2	105	c.74C>T	c.(73-75)CCA>CTA	p.P25L	YSK4_uc010fne.1_5'UTR|YSK4_uc002tuf.1_Missense_Mutation_p.P25L|YSK4_uc010fnc.1_Missense_Mutation_p.P25L|YSK4_uc010fnd.1_Missense_Mutation_p.P25L|YSK4_uc010zbg.1_Missense_Mutation_p.P25L|YSK4_uc002tui.3_Missense_Mutation_p.P42L	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	25							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CAAATCAGTTGGAGAAGAGTT	0.368													28	60					0	0	0.00283554	0	0
MCM6	4175	broad.mit.edu	37	2	136603847	136603847	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:136603847G>A	uc002tuw.2	-	15	2245	c.2169C>T	c.(2167-2169)ATC>ATT	p.I723I		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	723					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	TAAGGTTAGAGATTCGGCAGT	0.478													28	96					0	0	0.001512	0	0
THSD7B	80731	broad.mit.edu	37	2	138169266	138169266	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:138169266C>T	uc002tva.1	+	13	2690	c.2690C>T	c.(2689-2691)TCC>TTC	p.S897F	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.S787F	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GAATTTATATCCCAACCTTAT	0.463													45	103					0	0	0.00222228	0	0
LRP1B	53353	broad.mit.edu	37	2	141115608	141115608	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:141115608G>A	uc002tvj.1	-	74	12307	c.11335C>T	c.(11335-11337)CTC>TTC	p.L3779F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3779	Extracellular (Potential).|LDL-receptor class A 32.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCACACTGGAGATCCATAGGG	0.403										TSP Lung(27;0.18)			20	29					0	0	0.00188189	0	0
LRP1B	53353	broad.mit.edu	37	2	141202219	141202219	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:141202219G>A	uc002tvj.1	-	64	11059	c.10087C>T	c.(10087-10089)CAG>TAG	p.Q3363*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3363	Extracellular (Potential).|LDL-receptor class A 22.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTCCCACACTGAAATCGGCCT	0.418										TSP Lung(27;0.18)			20	40					0	0	0.00229938	0	0
LRP1B	53353	broad.mit.edu	37	2	141283561	141283561	+	Silent	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:141283561A>G	uc002tvj.1	-	49	8850	c.7878T>C	c.(7876-7878)AAT>AAC	p.N2626N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2626	Extracellular (Potential).|LDL-receptor class A 13.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGTCTGTGTTATCTAGAAGAA	0.363										TSP Lung(27;0.18)			5	12					0	0	0.00198382	0	0
GTDC1	79712	broad.mit.edu	37	2	144765040	144765040	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:144765040C>T	uc002tvp.2	-	7	863	c.584G>A	c.(583-585)GGT>GAT	p.G195D	GTDC1_uc002tvo.2_Missense_Mutation_p.G195D|GTDC1_uc002tvq.2_Intron|GTDC1_uc002tvr.2_Missense_Mutation_p.G195D|GTDC1_uc010fnn.2_Missense_Mutation_p.G195D|GTDC1_uc002tvs.2_Missense_Mutation_p.G163D|GTDC1_uc010fno.2_Missense_Mutation_p.G66D|GTDC1_uc002tvt.1_Missense_Mutation_p.G195D	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	195					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		CAGAACCGCACCGCCATTTCC	0.408													12	51					0	0	0.00244969	0	0
MBD5	55777	broad.mit.edu	37	2	149247097	149247097	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:149247097C>T	uc002twm.3	+	12	4185	c.3197C>T	c.(3196-3198)TCT>TTT	p.S1066F	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Missense_Mutation_p.S1066F|MBD5_uc002two.2_Missense_Mutation_p.S324F|MBD5_uc002twp.2_Missense_Mutation_p.S116F	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1066						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		ATTGACCCATCTCTTGGTCAA	0.512													16	55					0	0	0.00152264	0	0
RIF1	55183	broad.mit.edu	37	2	152273180	152273180	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:152273180C>T	uc002txm.2	+	5	516	c.386C>T	c.(385-387)CCC>CTC	p.P129L	RIF1_uc002txl.2_Missense_Mutation_p.P129L|RIF1_uc010fnv.1_Missense_Mutation_p.P93L|RIF1_uc002txn.2_Missense_Mutation_p.P129L|RIF1_uc002txo.2_Missense_Mutation_p.P129L|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	129					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		CAGACATTTCCCTCTGAAGTG	0.328													139	400					0	0	0.000781405	0	0
RIF1	55183	broad.mit.edu	37	2	152321487	152321487	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:152321487C>T	uc002txm.2	+	30	5583	c.5453C>T	c.(5452-5454)TCA>TTA	p.S1818L	RIF1_uc002txl.2_Missense_Mutation_p.S1818L|RIF1_uc002txn.2_Missense_Mutation_p.S1818L|RIF1_uc002txo.2_Missense_Mutation_p.S1818L|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1818					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		GAAACCAAATCAAAAGAAAAC	0.313													37	89					0	0	0.000953801	0	0
NEB	4703	broad.mit.edu	37	2	152410526	152410526	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:152410526G>A	uc010fnx.2	-	98	14530	c.14339C>T	c.(14338-14340)TCA>TTA	p.S4780L	NEB_uc002txr.2_Missense_Mutation_p.S1203L	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4780	Nebulin 130.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTCATAAACTGATCTGTACAG	0.423													27	117					0	0	0.00106085	0	0
NEB	4703	broad.mit.edu	37	2	152482047	152482047	+	Splice_Site	SNP	C	T	T	rs111863059		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:152482047C>T	uc010fnx.2	-	67	9914	c.9723_splice	c.e67+1	p.E3241_splice		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3						muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AATGATCTTACCTCACTATAA	0.363													5	21					0	0	0.000602214	0	0
NEB	4703	broad.mit.edu	37	2	152529026	152529026	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:152529026C>T	uc010fnx.2	-	37	4347	c.4156G>A	c.(4156-4158)GAC>AAC	p.D1386N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1386	Nebulin 35.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTAACCATGTCCCCAGGGGTA	0.473													14	55					0	0	0.00074312	0	0
NEB	4703	broad.mit.edu	37	2	152554096	152554096	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:152554096A>G	uc010fnx.2	-	14	1410	c.1219T>C	c.(1219-1221)TTC>CTC	p.F407L	NEB_uc010fny.1_5'UTR	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	407	Nebulin 10.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCGAGCTTGAATTTGGGGGTC	0.328													39	119					0	0	0.000781405	0	0
NEB	4703	broad.mit.edu	37	2	152573980	152573980	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:152573980C>T	uc010fnx.2	-	10	963	c.772G>A	c.(772-774)GAT>AAT	p.D258N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	258	Nebulin 6.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCTGGAGGATCAGCCAGAGGC	0.403													7	51					0	0	0.000673444	0	0
GALNT13	114805	broad.mit.edu	37	2	155307062	155307062	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:155307062G>A	uc002tyr.3	+	13	2237	c.1670G>A	c.(1669-1671)TGA>TAA	p.*557*	GALNT13_uc002tyt.3_3'UTR|GALNT13_uc010fod.2_3'UTR|uc002tyu.1_Intron	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	557						Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TTGGGCACATGAAGATCATGT	0.403													8	18					0	0	0.000274275	0	0
NR4A2	4929	broad.mit.edu	37	2	157182757	157182757	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:157182757C>T	uc002tyz.3	-	7	1867	c.1445G>A	c.(1444-1446)TGG>TAG	p.W482*	NR4A2_uc002tyx.3_Nonsense_Mutation_p.W419*|NR4A2_uc010zcf.1_Nonsense_Mutation_p.W482*|NR4A2_uc010zcg.1_Intron	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	482					cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						GGAATCAATCCATTCCCCAAA	0.473													19	73					0	0	0.00121646	0	0
GPD2	2820	broad.mit.edu	37	2	157439382	157439382	+	Silent	SNP	C	T	T	rs144944634		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:157439382C>T	uc002tzf.3	+	17	2496	c.2136C>T	c.(2134-2136)CTC>CTT	p.L712L	GPD2_uc010zch.1_Silent_p.L485L|GPD2_uc002tzd.3_Silent_p.L712L|GPD2_uc002tze.1_RNA	NM_001083112	NP_001076581	P43304	GPDM_HUMAN	glycerol-3-phosphate dehydrogenase 2,	712					cellular lipid metabolic process	glycerol-3-phosphate dehydrogenase complex|mitochondrial inner membrane	calcium ion binding|sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity			ovary(1)	1						AAGAGAACCTCGACAGAAGAG	0.433													10	25					0	0	0.000673444	0	0
MARCH7	64844	broad.mit.edu	37	2	160605254	160605254	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:160605254C>T	uc002uax.2	+	5	1575	c.1453C>T	c.(1453-1455)CGG>TGG	p.R485W	MARCH7_uc010foq.2_Missense_Mutation_p.R485W|MARCH7_uc010zcn.1_Missense_Mutation_p.R429W|MARCH7_uc010for.2_Missense_Mutation_p.R447W|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	485							ligase activity|zinc ion binding				0						TTCCTTATTCCGGTTTGCAGT	0.453													91	273					0	0	0.000781405	0	0
LY75	4065	broad.mit.edu	37	2	160734882	160734882	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:160734882C>T	uc002ubc.3	-	11	1796	c.1727G>A	c.(1726-1728)GGA>GAA	p.G576E	LY75_uc002ubb.3_Missense_Mutation_p.G576E|LY75_uc010fos.2_Missense_Mutation_p.G576E|LY75_uc010fot.1_Missense_Mutation_p.G576E	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	576	Extracellular (Potential).|C-type lectin 3.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		CCGCCTTCTTCCACCAACAGT	0.408													12	58					0	0	0.00185496	0	0
PLA2R1	22925	broad.mit.edu	37	2	160898678	160898678	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:160898678C>T	uc002ube.1	-	3	732	c.525G>A	c.(523-525)GGG>GGA	p.G175G	PLA2R1_uc010zcp.1_Silent_p.G175G|PLA2R1_uc002ubf.2_Silent_p.G175G	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	175	Extracellular (Potential).|Fibronectin type-II.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TACACGGCATCCCGTGGGTGT	0.433													16	42					0	0	0.000422831	0	0
ITGB6	3694	broad.mit.edu	37	2	160958284	160958284	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:160958284C>T	uc002ubh.2	-	15	2346	c.2330G>A	c.(2329-2331)AGG>AAG	p.R777K	ITGB6_uc002ubg.2_5'Flank|ITGB6_uc010fou.2_Missense_Mutation_p.R777K|ITGB6_uc010zcq.1_Missense_Mutation_p.R735K|ITGB6_uc010fov.1_Missense_Mutation_p.R777K	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	777	Cytoplasmic (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						TTGTTTTTCCCTGTGTTTATA	0.308													12	49					0	0	0.00185496	0	0
RBMS1	5937	broad.mit.edu	37	2	161143583	161143583	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:161143583G>A	uc002ubo.2	-	7	1097	c.653C>T	c.(652-654)CCT>CTT	p.P218L	RBMS1_uc002ubj.2_Missense_Mutation_p.P185L|RBMS1_uc002ubk.2_Missense_Mutation_p.P185L|RBMS1_uc002ubl.2_Missense_Mutation_p.P216L|RBMS1_uc002ubn.2_Missense_Mutation_p.P218L|RBMS1_uc002ubi.3_Missense_Mutation_p.P218L|RBMS1_uc002ubm.2_Missense_Mutation_p.P185L|RBMS1_uc002ubp.2_Missense_Mutation_p.P218L|RBMS1_uc010fox.2_Missense_Mutation_p.P218L	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	218	RRM 2.				DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						ACACAATAAAGGTTCTGTGGG	0.373													22	152					0	0	0.000586117	0	0
FAP	2191	broad.mit.edu	37	2	163031376	163031376	+	Splice_Site	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:163031376C>T	uc002ucd.2	-	22	2177	c.1969_splice	c.e22+1	p.A657_splice	FAP_uc010fpc.2_Splice_Site_p.A206_splice|FAP_uc010zct.1_Splice_Site_p.A632_splice|FAP_uc010fpd.2_Splice_Site_p.A136_splice	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit						endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						TGTTTCCATACCGTAATATTC	0.398													9	26					0	0	0.000442599	0	0
KCNH7	90134	broad.mit.edu	37	2	163253381	163253381	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:163253381G>A	uc002uch.1	-	11	2694	c.2482C>T	c.(2482-2484)CTC>TTC	p.L828F		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	828	Cytoplasmic (Potential).|cNMP.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity	p.L828H(1)		ovary(3)|skin(2)	5					Ibutilide(DB00308)	CAGTATGTGAGGGCTCTTACA	0.353													8	23					0	0	0.000673444	0	0
SCN3A	6328	broad.mit.edu	37	2	165947816	165947816	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:165947816G>A	uc002ucx.2	-	28	5339	c.4847C>T	c.(4846-4848)TCC>TTC	p.S1616F	SCN3A_uc010zcy.1_Missense_Mutation_p.S99F|SCN3A_uc002ucy.2_Missense_Mutation_p.S1567F|SCN3A_uc002ucz.2_Missense_Mutation_p.S1567F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1616						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CAAGGTAGGGGACACAAAATA	0.433													24	56					0	0	0.000720815	0	0
SCN2A	6326	broad.mit.edu	37	2	166172255	166172255	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:166172255C>T	uc002udc.2	+	11	1948	c.1658C>T	c.(1657-1659)TCT>TTT	p.S553F	SCN2A_uc002udd.2_Missense_Mutation_p.S553F|SCN2A_uc002ude.2_Missense_Mutation_p.S553F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	553					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AAGAGATTTTCTTCTCCACAC	0.338													24	111					0	0	0.001512	0	0
SCN2A	6326	broad.mit.edu	37	2	166179830	166179830	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:166179830C>T	uc002udc.2	+	12	2126	c.1836C>T	c.(1834-1836)TTC>TTT	p.F612F	SCN2A_uc002udd.2_Silent_p.F612F|SCN2A_uc002ude.2_Silent_p.F612F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	612					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ACTCTCTGTTCGTGCCGCACA	0.557													21	41					0	0	0.00278032	0	0
TTC21B	79809	broad.mit.edu	37	2	166740445	166740445	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:166740445C>G	uc002udk.2	-	26	3676	c.3543G>C	c.(3541-3543)AAG>AAC	p.K1181N	TTC21B_uc002udj.1_RNA	NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	1181						cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						TCGCAATACGCTTCAGCTGGT	0.403													26	79					0	0	0.00127121	0	0
LRP2	4036	broad.mit.edu	37	2	169995847	169995847	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:169995847G>A	uc002ues.2	-	74	13515	c.13302C>T	c.(13300-13302)ATC>ATT	p.I4434I		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4434	Helical; (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAATTACGACGATCAAGAGGA	0.507													13	31					0	0	0.000422831	0	0
LRP2	4036	broad.mit.edu	37	2	170012891	170012891	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:170012891C>T	uc002ues.2	-	65	12257	c.12044G>A	c.(12043-12045)GGG>GAG	p.G4015E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4015	EGF-like 15; calcium-binding (Potential).|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GGGACAAGTCCCAAATTGTTC	0.433													18	51					0	0	0.000958276	0	0
LRP2	4036	broad.mit.edu	37	2	170027124	170027124	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:170027124G>A	uc002ues.2	-	59	11530	c.11317C>T	c.(11317-11319)CCC>TCC	p.P3773S		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3773	LDL-receptor class A 32.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CATCGCGAGGGAATGCACTGC	0.502													22	55					0	0	0.00152264	0	0
LRP2	4036	broad.mit.edu	37	2	170037990	170037990	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:170037990G>A	uc002ues.2	-	52	10350	c.10137C>T	c.(10135-10137)CTC>CTT	p.L3379L		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3379	LDL-receptor class B 33.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CTGCCCAGTAGAGTAGATCAT	0.418													18	47					0	0	0.00188189	0	0
PPIG	9360	broad.mit.edu	37	2	170492625	170492625	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:170492625C>T	uc002uez.2	+	13	1261	c.1041C>T	c.(1039-1041)TCC>TCT	p.S347S	PPIG_uc010fpx.2_Silent_p.S332S|PPIG_uc010fpy.2_Silent_p.S340S|PPIG_uc002ufb.2_Silent_p.S347S|PPIG_uc002ufd.2_Silent_p.S344S	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	347					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	CTTCCAGATCCAGATCAAGGG	0.443													20	42					0	0	0.000586117	0	0
MYO3B	140469	broad.mit.edu	37	2	171248918	171248918	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:171248918G>A	uc002ufy.2	+	16	1847	c.1704G>A	c.(1702-1704)GTG>GTA	p.V568V	MYO3B_uc002ufv.2_Silent_p.V555V|MYO3B_uc010fqb.1_Silent_p.V555V|MYO3B_uc002ufz.2_Silent_p.V568V|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	568	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CTGGAAGGGTGATGCACGACA	0.408													11	37					0	0	0.00185496	0	0
SP5	389058	broad.mit.edu	37	2	171573029	171573029	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:171573029C>T	uc002uge.2	+	2	478	c.312C>T	c.(310-312)TCC>TCT	p.S104S	LOC440925_uc002ugd.2_5'Flank	NM_001003845	NP_001003845	Q6BEB4	SP5_HUMAN	Sp5 transcription factor	104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCAGCCGTCCTTCGGGGCTG	0.711													7	24					0	0	0.00198382	0	0
GORASP2	26003	broad.mit.edu	37	2	171822316	171822318	+	Missense_Mutation	TNP	TTC	CCT	CCT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:171822316_171822318TTC>CCT	uc002ugk.2	+	10	1175_1177	c.1035_1037TTC>CCT	c.(1033-1038)CCTTCC>CCCCTC	p.S346L	GORASP2_uc002ugj.2_Missense_Mutation_p.S278L|GORASP2_uc010zdl.1_Missense_Mutation_p.S358L|GORASP2_uc010zdm.1_Missense_Mutation_p.S302L|GORASP2_uc002ugl.2_Missense_Mutation_p.S278L|GORASP2_uc002ugm.2_Missense_Mutation_p.S128L	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	346	Pro-rich.					Golgi membrane				breast(1)|central_nervous_system(1)	2						CACCTCTTCCTTCCATGCCTCCC	0.517													7	52					0	0	6.4e-05	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173787010	173787010	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:173787010G>A	uc002uhv.3	+	6	706	c.519G>A	c.(517-519)AGG>AGA	p.R173R	RAPGEF4_uc002uhu.2_Silent_p.R173R|RAPGEF4_uc002uhw.3_Silent_p.R29R|RAPGEF4_uc010zec.1_Silent_p.R20R|RAPGEF4_uc010zed.1_Silent_p.R20R|RAPGEF4_uc010zee.1_Silent_p.R20R|RAPGEF4_uc010fqo.2_Silent_p.R20R|RAPGEF4_uc010zef.1_5'UTR	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	173					blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			CTCCTTTAGGGATTCCTGACA	0.368													74	243					0	0	0.000781405	0	0
ZAK	51776	broad.mit.edu	37	2	174131192	174131192	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:174131192C>T	uc002uhz.2	+	20	2317	c.2117C>T	c.(2116-2118)TCA>TTA	p.S706L	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	706					activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			TCCACTCCTTCAAGAGGAAGA	0.473													9	33					0	0	0.000442599	0	0
PDE11A	50940	broad.mit.edu	37	2	178879164	178879164	+	Silent	SNP	G	A	A	rs144284382		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:178879164G>A	uc002ulq.2	-	2	1254	c.936C>T	c.(934-936)ATC>ATT	p.I312I	PDE11A_uc002ulr.2_Silent_p.I62I|PDE11A_uc002ult.1_Silent_p.I62I	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	312	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			TTAGCTTGTCGATTTCATCAT	0.393									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				11	32					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179396737	179396737	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179396737C>T	uc010zfg.1	-	307	97125	c.96901G>A	c.(96901-96903)GAA>AAA	p.E32301K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25996K|TTN_uc010zfi.1_Missense_Mutation_p.E25929K|TTN_uc010zfj.1_Missense_Mutation_p.E25804K|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33228							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGTCATCTTCGTATTCCTCA	0.527													7	18					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179413186	179413186	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179413186C>T	uc010zfg.1	-	288	85687	c.85463G>A	c.(85462-85464)CGA>CAA	p.R28488Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R22183Q|TTN_uc010zfi.1_Missense_Mutation_p.R22116Q|TTN_uc010zfj.1_Missense_Mutation_p.R21991Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29415							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTGCCTCTCGTTTCTCTAC	0.493													29	90					0	0	0.00106085	0	0
TTN	7273	broad.mit.edu	37	2	179427823	179427823	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179427823G>A	uc010zfg.1	-	275	75556	c.75332C>T	c.(75331-75333)GCT>GTT	p.A25111V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A18806V|TTN_uc010zfi.1_Missense_Mutation_p.A18739V|TTN_uc010zfj.1_Missense_Mutation_p.A18614V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26038							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGAGATCAGCATCGAGTTC	0.468													31	120					0	0	0.00209593	0	0
TTN	7273	broad.mit.edu	37	2	179439680	179439680	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179439680G>A	uc010zfg.1	-	275	63699	c.63475C>T	c.(63475-63477)CCA>TCA	p.P21159S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P14854S|TTN_uc010zfi.1_Missense_Mutation_p.P14787S|TTN_uc010zfj.1_Missense_Mutation_p.P14662S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22086							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTGGCCCTGGGATATCATGG	0.448													5	12					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179468614	179468614	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179468614C>T	uc010zfg.1	-	231	47320	c.47096G>A	c.(47095-47097)GGA>GAA	p.G15699E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G9394E|TTN_uc010zfi.1_Missense_Mutation_p.G9327E|TTN_uc010zfj.1_Missense_Mutation_p.G9202E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16626							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATGGGATCTCCTGCAACCTC	0.408													10	19					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179522819	179522819	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179522819C>T	uc010zfk.1	-	29	2601	c.2053G>A	c.(2053-2055)GCT>ACT	p.A685T	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAATCGGAGCTTCTGGTTTT	0.408													21	19					0	0	0.000586117	0	0
TTN	7273	broad.mit.edu	37	2	179535832	179535832	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179535832C>T	uc010zfg.1	-	151	31614	c.31390G>A	c.(31390-31392)GAG>AAG	p.E10464K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E7125K|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11391							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTGGTGGCTCTTTTCGAGGA	0.363													13	29					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179546108	179546108	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179546108G>A	uc010zfg.1	-	134	29734	c.29510C>T	c.(29509-29511)CCC>CTC	p.P9837L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P6498L|TTN_uc010fre.1_Intron|TTN_uc002una.1_5'Flank|TTN_uc010frf.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10764							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTACCTTTGGGTGGTGGAGG	0.368													8	36					0	0	0.000274275	0	0
TTN	7273	broad.mit.edu	37	2	179553445	179553445	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179553445G>A	uc010zfg.1	-	123	28648	c.28424C>T	c.(28423-28425)TCC>TTC	p.S9475F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S6136F|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10402							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACTGCGAAGGATAGTTTTTC	0.373													26	97					0	0	0.000878237	0	0
TTN	7273	broad.mit.edu	37	2	179558413	179558413	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179558413G>A	uc010zfg.1	-	116	28009	c.27785C>T	c.(27784-27786)CCC>CTC	p.P9262L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P5923L|TTN_uc010fre.1_Missense_Mutation_p.P373L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10189							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTACCTCGGGGACTTAAAA	0.313													6	21					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179577973	179577973	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179577973C>T	uc010zfg.1	-	90	23380	c.23156G>A	c.(23155-23157)GGA>GAA	p.G7719E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4380E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8646							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATCTCATTTCCTTCATGGAA	0.433													8	16					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179581857	179581857	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179581857C>T	uc010zfg.1	-	85	22096	c.21872G>A	c.(21871-21873)GGA>GAA	p.G7291E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G3952E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8218							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGAGTCTTTTCCAGCGATGTT	0.433													12	36					0	0	0.00244969	0	0
TTN	7273	broad.mit.edu	37	2	179584982	179584982	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179584982C>T	uc010zfg.1	-	78	19879	c.19655G>A	c.(19654-19656)CGA>CAA	p.R6552Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R3213Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7479							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCACGAATCGTGGAGGTTC	0.453													8	44					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179585332	179585332	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179585332C>T	uc010zfg.1	-	77	19649	c.19425G>A	c.(19423-19425)GTG>GTA	p.V6475V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V3136V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7402							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTGGAGAATCACATCAGAAC	0.398													5	28					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179588149	179588149	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179588149C>T	uc010zfg.1	-	71	18170	c.17946G>A	c.(17944-17946)GTG>GTA	p.V5982V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V2643V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6909							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAAACCTTTCACAAAGAGAC	0.398													10	12					0	0	0.00185496	0	0
TTN	7273	broad.mit.edu	37	2	179590249	179590249	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179590249C>T	uc010zfg.1	-	68	17174	c.16950G>A	c.(16948-16950)GTG>GTA	p.V5650V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V2311V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6577							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTCTAATCACTTCTTCCT	0.438													15	53					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179596173	179596173	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179596173C>T	uc010zfg.1	-	56	13812	c.13588G>A	c.(13588-13590)GAT>AAT	p.D4530N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1191N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5457							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTATATTATCGTCTTCAGTG	0.478													22	47					0	0	0.00152264	0	0
TTN	7273	broad.mit.edu	37	2	179598488	179598488	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179598488C>T	uc010zfg.1	-	50	12120	c.11896G>A	c.(11896-11898)GAA>AAA	p.E3966K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E627K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4893							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCCGTCTTCTCTGATGACC	0.453													28	101					0	0	0.00058488	0	0
TTN	7273	broad.mit.edu	37	2	179604872	179604872	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179604872G>A	uc010zfh.1	-	46	12799	c.12575C>T	c.(12574-12576)CCC>CTC	p.P4192L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P4125L|TTN_uc010zfj.1_Missense_Mutation_p.P4000L|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	4119							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTGCCACGGGCTCTCTTTT	0.448													11	51					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179606422	179606422	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179606422G>A	uc010zfh.1	-	46	11249	c.11025C>T	c.(11023-11025)ATC>ATT	p.I3675I	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.I3608I|TTN_uc010zfj.1_Silent_p.I3483I|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGGTTTGGGGATGCCAATGA	0.423													22	47					0	0	0.000720815	0	0
TTN	7273	broad.mit.edu	37	2	179611120	179611120	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179611120A>T	uc002unb.2	-	46	16231	c.16007T>A	c.(16006-16008)TTT>TAT	p.F5336Y	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCAGGAGTAAATTCGGGAAC	0.358													7	15					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179612026	179612026	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179612026T>A	uc002unb.2	-	46	15325	c.15101A>T	c.(15100-15102)GAA>GTA	p.E5034V	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	1138							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCAGCAACTTCCCCTAAAGG	0.433													9	14					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179612131	179612131	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179612131G>A	uc002unb.2	-	46	15220	c.14996C>T	c.(14995-14997)TCT>TTT	p.S4999F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGACTTTGGAGATTCAAAATA	0.363													10	33					0	0	0.00185496	0	0
TTN	7273	broad.mit.edu	37	2	179615609	179615609	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179615609C>T	uc002unb.2	-	46	11742	c.11518G>A	c.(11518-11520)GAA>AAA	p.E3840K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9675							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATAATTTCTTCCAGCTGTCCT	0.373													11	65					0	0	0.00185496	0	0
CCDC141	285025	broad.mit.edu	37	2	179718304	179718304	+	Silent	SNP	T	C	C	rs76657151		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:179718304T>C	uc002unf.1	-	10	1440	c.1383A>G	c.(1381-1383)GGA>GGG	p.G461G		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	461							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TGGAATATTTTCCAACTCTTA	0.388													25	81					0	0	0.00178596	0	0
NCKAP1	10787	broad.mit.edu	37	2	183795517	183795517	+	Splice_Site	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:183795517C>T	uc002upc.2	-	27	3262	c.2860_splice	c.e27-1	p.V954_splice	NCKAP1_uc002upb.2_Splice_Site_p.V960_splice	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1						apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TCATTGCAACCTGATAAAAAC	0.363													7	34					0	0	0.000157383	0	0
TFPI	7035	broad.mit.edu	37	2	188361661	188361661	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:188361661C>T	uc002upx.2	-	3	299	c.266G>A	c.(265-267)GGA>GAA	p.G89E	TFPI_uc002upy.2_Missense_Mutation_p.G89E|TFPI_uc002upz.2_Missense_Mutation_p.G85E|TFPI_uc002uqa.2_Missense_Mutation_p.G89E|TFPI_uc002uqb.2_Missense_Mutation_p.G89E	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	89	BPTI/Kunitz inhibitor 1.				blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	ATTCTGATTTCCTTCACATCC	0.388													17	46					0	0	0.00121646	0	0
COL3A1	1281	broad.mit.edu	37	2	189852835	189852835	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:189852835G>A	uc002uqj.1	+	6	674	c.557G>A	c.(556-558)GGT>GAT	p.G186D		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	186	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGTCCCCCTGGTACATCTGGT	0.388													18	34					0	0	0.00188189	0	0
COL3A1	1281	broad.mit.edu	37	2	189856222	189856222	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:189856222G>A	uc002uqj.1	+	12	979	c.862G>A	c.(862-864)GGT>AGT	p.G288S	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	288	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGGTGAAAATGGTCTTCCAGG	0.279													11	21					0	0	0.000308642	0	0
COL3A1	1281	broad.mit.edu	37	2	189870087	189870087	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:189870087G>A	uc002uqj.1	+	41	3060	c.2943G>A	c.(2941-2943)GGG>GGA	p.G981G		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	981	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding	p.G981G(1)		central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GTGAAAGTGGGAAACCAGGAG	0.428													44	103					0	0	0.000781405	0	0
COL5A2	1290	broad.mit.edu	37	2	189943285	189943285	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:189943285C>T	uc002uqk.2	-	16	1291	c.1016G>A	c.(1015-1017)GGA>GAA	p.G339E	COL5A2_uc010frx.2_Intron	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	339					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TCCTGGCATTCCCCTCGGACC	0.428													49	148					0	0	0.000781405	0	0
COL5A2	1290	broad.mit.edu	37	2	189951477	189951477	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:189951477C>T	uc002uqk.2	-	9	940	c.665G>A	c.(664-666)GGA>GAA	p.G222E	COL5A2_uc010frx.2_5'Flank	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	222					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			ACCCTGTGGTCCCCTTGGGCC	0.358													5	18					0	0	0.00116845	0	0
SLC40A1	30061	broad.mit.edu	37	2	190439994	190439994	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:190439994C>T	uc002uqp.3	-	3	515	c.164G>A	c.(163-165)GGA>GAA	p.G55E	SLC40A1_uc002uqq.2_Missense_Mutation_p.G55E	NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	55					anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			GAGGCTGTTTCCATAGAGCTC	0.478													20	55					0	0	0.00188189	0	0
STAT4	6775	broad.mit.edu	37	2	191895761	191895761	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:191895761G>A	uc002usm.1	-	23	2411	c.2157C>T	c.(2155-2157)CCC>CCT	p.P719P	STAT4_uc002usn.1_Silent_p.P719P	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	719					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			TTGGAGACATGGGAAGAAGGT	0.398													46	171					0	0	0.000781405	0	0
SDPR	8436	broad.mit.edu	37	2	192700840	192700840	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:192700840C>T	uc002utb.2	-	2	1417	c.1087G>A	c.(1087-1089)GGG>AGG	p.G363R		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	363						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GAGTTACTCCCCCTGGAGGTC	0.567													44	109					0	0	0.000781405	0	0
DNAH7	56171	broad.mit.edu	37	2	196640681	196640681	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:196640681C>T	uc002utj.3	-	60	11192	c.11091G>A	c.(11089-11091)AAG>AAA	p.K3697K	DNAH7_uc002uti.3_Silent_p.K180K	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3697					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GTGGCAGAGTCTTTGTGTATT	0.403													12	57					0	0	0.00185496	0	0
DNAH7	56171	broad.mit.edu	37	2	196651884	196651884	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:196651884C>T	uc002utj.3	-	58	10829	c.10728G>A	c.(10726-10728)AAG>AAA	p.K3576K	DNAH7_uc002uti.3_Silent_p.K59K	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3576	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AAAGCAATTTCTTGAATTCCT	0.338													18	79					0	0	0.00229938	0	0
DNAH7	56171	broad.mit.edu	37	2	196722105	196722105	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:196722105C>T	uc002utj.3	-	44	8511	c.8410G>A	c.(8410-8412)GAT>AAT	p.D2804N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2804	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACTTACTTATCATATGAATCC	0.358													21	35					0	0	0.000586117	0	0
DNAH7	56171	broad.mit.edu	37	2	196729347	196729348	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:196729347_196729348CC>TT	uc002utj.3	-	41	7132_7133	c.7031_7032GG>AA	c.(7030-7032)GGG>GAA	p.G2344E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2344	ATP (Potential).|AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GCCTTCCACTCCCTCCAACCCC	0.475													10	29					0	0	6.4e-05	0	0
DNAH7	56171	broad.mit.edu	37	2	196749422	196749422	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:196749422G>A	uc002utj.3	-	35	5751	c.5650C>T	c.(5650-5652)CGA>TGA	p.R1884*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1884					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TTTCGAGTTCGATCTGAAATT	0.358													28	60					0	0	0.000878237	0	0
HECW2	57520	broad.mit.edu	37	2	197085603	197085603	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:197085603C>T	uc002utm.1	-	25	4392	c.4209G>A	c.(4207-4209)AAG>AAA	p.K1403K	HECW2_uc002utl.1_Silent_p.K1047K	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1403	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CGATGTACTCCTTCTTGTTCT	0.423													33	93					0	0	0.000692331	0	0
HECW2	57520	broad.mit.edu	37	2	197182013	197182013	+	Missense_Mutation	SNP	C	T	T	rs138652045		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:197182013C>T	uc002utm.1	-	10	2602	c.2419G>A	c.(2419-2421)GAG>AAG	p.E807K	HECW2_uc002utl.1_Missense_Mutation_p.E451K	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	807	Interaction with TP73.|WW 1.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GGGAGAGCCTCGTCCACCCTC	0.522													6	30					0	0	0.00116845	0	0
PGAP1	80055	broad.mit.edu	37	2	197708737	197708737	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:197708737G>A	uc002utw.2	-	25	2514	c.2400C>T	c.(2398-2400)CAC>CAT	p.H800H	PGAP1_uc002utx.2_Silent_p.H626H|PGAP1_uc010fsi.2_Silent_p.H74H	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	800	Cytoplasmic (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						AACGAAGATGGTGTATTGAGG	0.363													9	42					0	0	0.000673444	0	0
PPIL3	53938	broad.mit.edu	37	2	201747152	201747152	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:201747152A>T	uc002uwh.2	-	4	326	c.85T>A	c.(85-87)TTG>ATG	p.L29M	PPIL3_uc002uwi.2_Intron|PPIL3_uc002uwj.2_Intron|PPIL3_uc002uwk.2_Missense_Mutation_p.L29M	NM_130906	NP_570981	Q9H2H8	PPIL3_HUMAN	peptidylprolyl isomerase-like 3 isoform PPIL3b	29	PPIase cyclophilin-type.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity|protein binding				0						CAAAGAGCCAAGAAATTCTGA	0.358													44	128					0	0	0.000781405	0	0
CASP10	843	broad.mit.edu	37	2	202074227	202074227	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:202074227G>A	uc002uxl.1	+	9	1775	c.1357G>A	c.(1357-1359)GAG>AAG	p.E453K	CASP10_uc002uxj.1_Missense_Mutation_p.E453K|CASP10_uc002uxk.1_Missense_Mutation_p.E410K|CASP10_uc010fta.1_Missense_Mutation_p.E386K|CASP10_uc002uxm.1_Missense_Mutation_p.E410K|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	453					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						TCGGCATGTGGAGGAAGGCAG	0.463													40	110					0	0	0.00222228	0	0
STRADB	55437	broad.mit.edu	37	2	202340374	202340374	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:202340374C>T	uc002uyd.3	+	7	822	c.457C>T	c.(457-459)CCT>TCT	p.P153S		NM_018571	NP_061041	Q9C0K7	STRAB_HUMAN	STE20-related kinase adaptor beta	153	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|protein binding|protein kinase activity			skin(2)|stomach(1)|lung(1)	4						GACCTATTTTCCTGAAGGAAT	0.378													68	154					0	0	0.000781405	0	0
NBEAL1	65065	broad.mit.edu	37	2	204031949	204031950	+	Splice_Site	DNP	GG	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:204031949_204031950GG>TT	uc002uzt.3	+	37	6110	c.5777_splice	c.e37-1	p.G1926_splice	NBEAL1_uc002uzs.3_Splice_Site_p.G636_splice	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3								binding			ovary(1)|skin(1)	2						TCCGTTTTCAGGAGTAGGCTTT	0.371													11	406					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	204078284	204078284	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:204078284C>T	uc002uzt.3	+	54	8224	c.7891C>T	c.(7891-7893)CAT>TAT	p.H2631Y	NBEAL1_uc002uzs.3_Missense_Mutation_p.H1272Y|NBEAL1_uc002uzu.2_Missense_Mutation_p.H126Y	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2631							binding			ovary(1)|skin(1)	2						ACTGCCTATCCATTGTGTTTG	0.363													173	617					0	0	0.000781405	0	0
RAPH1	65059	broad.mit.edu	37	2	204359988	204359988	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:204359988G>A	uc002vad.2	-	2	314	c.89C>T	c.(88-90)GCC>GTC	p.A30V	RAPH1_uc002vae.2_Missense_Mutation_p.A30V|RAPH1_uc002vaf.2_Missense_Mutation_p.A30V	NM_213589	NP_998754	Q70E73	RAPH1_HUMAN	Ras association and pleckstrin homology domains	30					cell-matrix adhesion|signal transduction	cytoplasm|cytoskeleton|filopodium|lamellipodium|nucleus|plasma membrane				ovary(3)|breast(3)|central_nervous_system(2)|lung(1)|skin(1)	10						TCCAAGCCAGGCTCCAAACAT	0.413													47	133					0	0	0.000781405	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175252	207175252	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:207175252G>A	uc002vbp.2	+	5	6250	c.6000G>A	c.(5998-6000)TTG>TTA	p.L2000L		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2000							nucleic acid binding|zinc ion binding			ovary(3)	3						CTAAAGTTTTGAAGCCTATGC	0.373													12	27					0	0	0.00136819	0	0
ADAM23	8745	broad.mit.edu	37	2	207460822	207460822	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:207460822G>A	uc002vbq.2	+	24	2518	c.2295G>A	c.(2293-2295)GGG>GGA	p.G765G	ADAM23_uc010ziv.1_Intron	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	765	EGF-like.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		CCTGGGCAGGGACAGATTGCA	0.433													8	36					0	0	0.000442599	0	0
DYTN	391475	broad.mit.edu	37	2	207530676	207530676	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:207530676C>T	uc002vbr.1	-	10	1175	c.1058G>A	c.(1057-1059)CGA>CAA	p.R353Q		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	353						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		TGTTTCAAATCGACAAATTCT	0.393													23	65					0	0	0.000878237	0	0
DYTN	391475	broad.mit.edu	37	2	207575313	207575313	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:207575313T>A	uc002vbr.1	-	2	146	c.29A>T	c.(28-30)AAT>ATT	p.N10I		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	10						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		CTCAATACTATTAAGAGCATC	0.259													10	29					0	0	0.000442599	0	0
KLF7	8609	broad.mit.edu	37	2	207988766	207988766	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:207988766G>A	uc002vbz.1	-	2	787	c.465C>T	c.(463-465)CTC>CTT	p.L155L	KLF7_uc002vca.1_Silent_p.L155L|KLF7_uc010zix.1_Silent_p.L127L	NM_003709	NP_003700	O75840	KLF7_HUMAN	Kruppel-like factor 7 (ubiquitous)	155					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			central_nervous_system(1)|skin(1)	2				LUSC - Lung squamous cell carcinoma(261;0.0856)|Lung(261;0.166)|Epithelial(149;0.173)		CCACGGCAGAGAGAGTTTGTG	0.597													14	61					0	0	0.00074312	0	0
PTH2R	5746	broad.mit.edu	37	2	209302306	209302307	+	Nonsense_Mutation	DNP	AG	TA	TA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:209302306_209302307AG>TA	uc002vdb.2	+	3	436_437	c.223_224AG>TA	c.(223-225)AGA>TAA	p.R75*	PTH2R_uc010zjb.1_Nonsense_Mutation_p.R86*	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	75	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TTGTTGGCCCAGAGGAACAGTG	0.327													13	52					0	0	6.4e-05	0	0
CPS1	1373	broad.mit.edu	37	2	211447358	211447358	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:211447358G>A	uc002vee.3	+	6	678	c.546G>A	c.(544-546)AAG>AAA	p.K182K	CPS1_uc010fur.2_Silent_p.K188K	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	182	Anthranilate phosphoribosyltransferase homolog.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity	p.K182E(1)		ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TGCTTGGGAAGATTGAATTTG	0.363													20	69					0	0	0.00121646	0	0
FN1	2335	broad.mit.edu	37	2	216269122	216269123	+	Missense_Mutation	DNP	GA	CC	CC			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:216269122_216269123GA>CC	uc002vfa.2	-	20	3508_3509	c.3242_3243TC>GG	c.(3241-3243)GTC>GGG	p.V1081G	FN1_uc002vfb.2_Missense_Mutation_p.V1081G|FN1_uc002vfc.2_Missense_Mutation_p.V1081G|FN1_uc002vfd.2_Missense_Mutation_p.V1081G|FN1_uc002vfe.2_Missense_Mutation_p.V1081G|FN1_uc002vff.2_Missense_Mutation_p.V1081G|FN1_uc002vfg.2_Missense_Mutation_p.V1081G|FN1_uc002vfh.2_Missense_Mutation_p.V1081G|FN1_uc002vfi.2_Missense_Mutation_p.V1081G|FN1_uc002vfj.2_Missense_Mutation_p.V1081G	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1081	|Fibronectin type-III 5.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTGTGGTAAAGACTCCAGTGGC	0.386													19	101					0	0	6.4e-05	0	0
CXCR1	3577	broad.mit.edu	37	2	219029590	219029590	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:219029590G>A	uc002vhc.2	-	2	464	c.345C>T	c.(343-345)CTC>CTT	p.L115L		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	115	Helical; Name=3; (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						CTTCCTTCAGGAGTGAGACCA	0.562													12	37					0	0	0.00244969	0	0
VIL1	7429	broad.mit.edu	37	2	219294066	219294066	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:219294066G>A	uc002via.2	+	7	691	c.626G>A	c.(625-627)GGC>GAC	p.G209D	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Missense_Mutation_p.G209D|VIL1_uc002vic.1_Missense_Mutation_p.G209D	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	209	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACCTATGTAGGCGTGGTGGAC	0.642													29	84					0	0	0.00178596	0	0
PLCD4	84812	broad.mit.edu	37	2	219494318	219494318	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:219494318G>A	uc002vij.1	+	8	1246	c.1051G>A	c.(1051-1053)GGA>AGA	p.G351R	PLCD4_uc002vik.1_3'UTR|PLCD4_uc010zkk.1_Intron	NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	351	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CGTTTACCACGGACACACCCT	0.607													13	35					0	0	0.00136819	0	0
TTLL4	9654	broad.mit.edu	37	2	219617531	219617531	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:219617531C>T	uc002viy.2	+	17	3392	c.3022C>T	c.(3022-3024)CGG>TGG	p.R1008W	TTLL4_uc010zkl.1_Missense_Mutation_p.R843W|TTLL4_uc010fvx.2_Missense_Mutation_p.R944W|TTLL4_uc010zkm.1_Missense_Mutation_p.R211W	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1008					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		AGATGATGTTCGGATTCTGGT	0.478													27	100					0	0	0.00209593	0	0
IHH	3549	broad.mit.edu	37	2	219920036	219920036	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:219920036G>A	uc002vjo.1	-	3	1129	c.1129C>T	c.(1129-1131)CCG>TCG	p.P377S		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	377					cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCTCCCCCGGAGTCCAGCTG	0.662													9	16					0	0	0.000442599	0	0
PTPRN	5798	broad.mit.edu	37	2	220168539	220168539	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:220168539C>T	uc002vkz.2	-	4	384	c.295G>A	c.(295-297)GAT>AAT	p.D99N	PTPRN_uc010zlc.1_Missense_Mutation_p.D9N|PTPRN_uc002vla.2_Missense_Mutation_p.D99N	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	99	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GTGAGGTCATCGTGCCAGGAC	0.577													24	41					0	0	0.00278032	0	0
SPEG	10290	broad.mit.edu	37	2	220350134	220350134	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:220350134C>T	uc010fwg.2	+	31	7676	c.7676C>T	c.(7675-7677)TCG>TTG	p.S2559L		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2559					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		AAGGGGTTATCGCCACCAAAC	0.617													28	89					0	0	0.00106085	0	0
SPEG	10290	broad.mit.edu	37	2	220357315	220357315	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:220357315G>A	uc010fwg.2	+	41	9612	c.9612_splice	c.e41-1	p.W3204_splice		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus						muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CTGCCTGGCAGGAGCCGGCCC	0.507													46	136					0	0	0.000781405	0	0
GMPPA	29926	broad.mit.edu	37	2	220370708	220370708	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:220370708C>T	uc002vlr.2	+	11	975	c.907C>T	c.(907-909)CCC>TCC	p.P303S	GMPPA_uc002vls.2_Missense_Mutation_p.P303S|GMPPA_uc002vlt.2_Missense_Mutation_p.P356S|GMPPA_uc002vlu.2_Missense_Mutation_p.P356S|GMPPA_uc002vlv.2_Missense_Mutation_p.P303S|GMPPA_uc002vlw.2_RNA|GMPPA_uc002vlx.2_Missense_Mutation_p.P303S	NM_013335	NP_037467	Q96IJ6	GMPPA_HUMAN	GDP-mannose pyrophosphorylase A	303					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0		Renal(207;0.0183)		Epithelial(149;3.82e-10)|all cancers(144;6.25e-08)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00807)|READ - Rectum adenocarcinoma(5;0.148)		ACAGCTGGGCCCCAACGTCTC	0.368													4	10					0	0	0.000602214	0	0
CHPF	79586	broad.mit.edu	37	2	220405064	220405064	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:220405064G>A	uc002vmc.3	-	4	1596	c.1369C>T	c.(1369-1371)CCG>TCG	p.P457S	CHPF_uc010zlh.1_Missense_Mutation_p.P295S	NM_024536	NP_078812	Q8IZ52	CHSS2_HUMAN	chondroitin polymerizing factor	457	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity|protein binding				0		Renal(207;0.0183)		Epithelial(149;3.02e-08)|all cancers(144;3.41e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		CCCCGGGCCGGATCAAAGCGT	0.667													27	69					0	0	0.000692331	0	0
SLC4A3	6508	broad.mit.edu	37	2	220500143	220500143	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:220500143C>T	uc002vmp.3	+	13	2166	c.1897C>T	c.(1897-1899)CTT>TTT	p.L633F	SLC4A3_uc002vmo.3_Missense_Mutation_p.L660F|SLC4A3_uc010fwm.2_Missense_Mutation_p.L183F|SLC4A3_uc010fwn.1_Missense_Mutation_p.L142F	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	633	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCGAGAGCTGCTTAGGAAGCG	0.632													12	36					0	0	0.00244969	0	0
PAX3	5077	broad.mit.edu	37	2	223086015	223086015	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:223086015G>A	uc010fwo.2	-	6	1250	c.884C>T	c.(883-885)CCT>CTT	p.P295L	PAX3_uc002vmt.1_Missense_Mutation_p.P295L|PAX3_uc002vmy.1_Missense_Mutation_p.P294L|PAX3_uc002vmv.1_Missense_Mutation_p.P295L|PAX3_uc002vmw.1_Missense_Mutation_p.P295L|PAX3_uc002vmx.1_Missense_Mutation_p.P295L	NM_181457	NP_852122	P23760	PAX3_HUMAN	paired box 3 isoform PAX3	295					apoptosis|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX3/FOXO1(749)|PAX3/NCOA1(8)|PAX3/NCOA2(4)	soft_tissue(761)|ovary(4)|skin(1)	766		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;1.85e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCAGTGGGAGGGAACCCCCC	0.542			T	FOXO1A|NCOA1	alveolar rhabdomyosarcoma		Waardenburg syndrome; craniofacial-deafness-hand syndrome						43	123					0	0	0.0025221	0	0
SGPP2	130367	broad.mit.edu	37	2	223423243	223423243	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:223423243G>A	uc010zlo.1	+	5	826	c.826G>A	c.(826-828)GAC>AAC	p.D276N	SGPP2_uc010zlp.1_Missense_Mutation_p.D148N	NM_152386	NP_689599	Q8IWX5	SGPP2_HUMAN	sphingosine-1-phosphate phosphotase 2	276					sphingosine metabolic process	endoplasmic reticulum membrane|integral to membrane	dihydrosphingosine-1-phosphate phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)|skin(1)	2		Renal(207;0.0376)		Epithelial(121;2.08e-09)|all cancers(144;9.25e-07)|LUSC - Lung squamous cell carcinoma(224;0.011)|Lung(261;0.0143)		AACCCGGGCGGACACCACCAC	0.547													34	136					0	0	0.000814825	0	0
MRPL44	65080	broad.mit.edu	37	2	224828523	224828523	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:224828523G>A	uc002vnr.3	+	3	768	c.699G>A	c.(697-699)AAG>AAA	p.K233K		NM_022915	NP_075066	Q9H9J2	RM44_HUMAN	mitochondrial ribosomal protein L44 precursor	233					RNA processing	mitochondrion|ribosome	double-stranded RNA binding|protein binding|ribonuclease III activity			central_nervous_system(1)	1		all_lung(227;0.00679)|Lung NSC(271;0.00855)|Renal(207;0.0112)|all_hematologic(139;0.189)		Epithelial(121;2.51e-10)|all cancers(144;7.89e-08)|Lung(261;0.00705)|LUSC - Lung squamous cell carcinoma(224;0.008)		AGATGTGGAAGATAATAAATC	0.343													24	72					0	0	0.001512	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447449	226447449	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:226447449C>T	uc002voe.2	+	4	1491	c.1316C>T	c.(1315-1317)CCC>CTC	p.P439L	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.P209L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	439	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TCTCCCTCCCCCGTCAGCATG	0.642													9	21					0	0	0.000442599	0	0
COL4A3	1285	broad.mit.edu	37	2	228118846	228118846	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:228118846G>A	uc002vom.1	+	14	946	c.784G>A	c.(784-786)GGA>AGA	p.G262R	COL4A3_uc002von.1_Missense_Mutation_p.G262R|COL4A3_uc002voo.1_Missense_Mutation_p.G262R|COL4A3_uc002vop.1_Missense_Mutation_p.G262R|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	262	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGGGGAAAAGGGAGACAAGGG	0.428													31	92					0	0	0.00128727	0	0
MFF	56947	broad.mit.edu	37	2	228197249	228197249	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:228197249G>T	uc002vos.2	+	5	792	c.374G>T	c.(373-375)AGA>ATA	p.R125I	MFF_uc002vot.2_Missense_Mutation_p.R99I|MFF_uc002vou.2_Missense_Mutation_p.R125I|MFF_uc002vov.2_Missense_Mutation_p.R99I|MFF_uc002vow.2_Missense_Mutation_p.R99I|MFF_uc002vox.2_Missense_Mutation_p.R99I|MFF_uc002voy.2_Missense_Mutation_p.R125I|MFF_uc002voz.2_Missense_Mutation_p.R99I	NM_020194	NP_064579	Q9GZY8	MFF_HUMAN	mitochondrial fission factor	125	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane				large_intestine(1)	1						CTGAGTGAAAGACCACTAGAT	0.398													109	649					2.27815e-43	8.10924e-43	0.000781405	1	0
SLC19A3	80704	broad.mit.edu	37	2	228563620	228563620	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:228563620C>T	uc002vpi.2	-	3	900	c.811G>A	c.(811-813)GAG>AAG	p.E271K	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.E267K	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	271	Cytoplasmic (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	GAGTAGCACTCCTTCAAATCT	0.468													16	64					0	0	0.00121646	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882709	228882709	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:228882709C>T	uc002vpq.2	-	7	2908	c.2861G>A	c.(2860-2862)GGA>GAA	p.G954E	SPHKAP_uc002vpp.2_Missense_Mutation_p.G954E|SPHKAP_uc010zlx.1_Missense_Mutation_p.G954E	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	954						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGGTTGTTTTCCACTGGAGTT	0.493													33	67					0	0	0.00111076	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883993	228883993	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:228883993G>A	uc002vpq.2	-	7	1624	c.1577C>T	c.(1576-1578)TCG>TTG	p.S526L	SPHKAP_uc002vpp.2_Missense_Mutation_p.S526L|SPHKAP_uc010zlx.1_Missense_Mutation_p.S526L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	526						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGGAAAGTTCGAGACCACTTG	0.502													12	44					0	0	0.00136819	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884786	228884786	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:228884786C>T	uc002vpq.2	-	7	831	c.784G>A	c.(784-786)GAA>AAA	p.E262K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E262K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E262K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	262						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGCCACTTTTCCTTGTTGCAA	0.378													59	173					0	0	0.000781405	0	0
SP110	3431	broad.mit.edu	37	2	231035360	231035360	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:231035360G>A	uc002vqh.3	-	17	2173	c.1933C>T	c.(1933-1935)CGC>TGC	p.R645C	SP110_uc002vqg.3_Missense_Mutation_p.R669C	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	645	Bromo.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		TTATGGTTGCGAAACATCAGG	0.443													14	43					0	0	0.00074312	0	0
SP100	6672	broad.mit.edu	37	2	231379974	231379974	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:231379974C>T	uc002vqt.2	+	25	2400	c.2259C>T	c.(2257-2259)ATC>ATT	p.I753I	SP100_uc002vqu.1_Intron|SP100_uc010fxp.1_Intron	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	753	HMG box 1.				DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		AAACCTATATCCCTCCTAAAG	0.423													6	34					0	0	0.00116845	0	0
SP100	6672	broad.mit.edu	37	2	231380144	231380145	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:231380144_231380145CC>TT	uc002vqt.2	+	25	2570_2571	c.2429_2430CC>TT	c.(2428-2430)ACC>ATT	p.T810I	SP100_uc002vqu.1_Intron|SP100_uc010fxp.1_Intron	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	810	HMG box 2.				DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TGGAATAACACCGCTGCAGCTG	0.287													14	41					0	0	6.4e-05	0	0
SP100	6672	broad.mit.edu	37	2	231406721	231406721	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:231406721A>G	uc002vqu.1	+	28	2659	c.2518A>G	c.(2518-2520)ATC>GTC	p.I840V	SP100_uc010fxp.1_Missense_Mutation_p.I158V	NM_001080391	NP_001073860	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 1	Error:Variant_position_missing_in_P23497_after_alignment					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CATGCGTCTCATCTTTCATAA	0.438													9	45					0	0	0.00136819	0	0
INPP5D	3635	broad.mit.edu	37	2	234106805	234106806	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:234106805_234106806CC>TT	uc010zmo.1	+	24	2911_2912	c.2758_2759CC>TT	c.(2758-2760)CCC>TTC	p.P920F	INPP5D_uc010zmp.1_Missense_Mutation_p.P919F	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	920	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GGGAGTGGGGCCCTTTGGGCCA	0.634													6	28					0	0	6.4e-05	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526903	234526903	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:234526903C>T	uc002vup.2	+	1	613	c.550C>T	c.(550-552)CCT>TCT	p.P184S	UGT1A8_uc010zmv.1_Missense_Mutation_p.P184S	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	184					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGCACAGTGCCCTGCTCCTCT	0.493													47	101					0	0	0.000781405	0	0
TRPM8	79054	broad.mit.edu	37	2	234847758	234847758	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:234847758C>T	uc002vvh.2	+	5	505	c.465C>T	c.(463-465)TTC>TTT	p.F155F	TRPM8_uc010fyj.2_5'UTR|TRPM8_uc002vvi.3_Silent_p.F105F|TRPM8_uc002vvj.3_Silent_p.F78F	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	155	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CCAAGAACTTCGCCCTGAAGC	0.607													17	42					0	0	0.000566183	0	0
SH3BP4	23677	broad.mit.edu	37	2	235951492	235951492	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:235951492C>T	uc002vvp.2	+	4	2472	c.2079C>T	c.(2077-2079)CTC>CTT	p.L693L	SH3BP4_uc010fym.2_Silent_p.L693L|SH3BP4_uc002vvq.2_Silent_p.L693L	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	693					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		GGGTCAGGCTCCGGGGCCAGC	0.642													17	37					0	0	0.00074312	0	0
IQCA1	79781	broad.mit.edu	37	2	237300918	237300918	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:237300918C>T	uc002vvz.1	-	10	1468	c.1286G>A	c.(1285-1287)CGA>CAA	p.R429Q	IQCA1_uc002vwb.2_Missense_Mutation_p.R436Q|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.R388Q	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	429	Lys-rich.						ATP binding			ovary(1)	1						TAATTCTTTTCGTTTCTCCTC	0.368													6	19					0	0	0.00198382	0	0
CXCR7	57007	broad.mit.edu	37	2	237489778	237489778	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:237489778C>T	uc010fyq.2	+	3	900	c.670C>T	c.(670-672)CCC>TCC	p.P224S	CXCR7_uc002vwd.2_Missense_Mutation_p.P224S	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	224	Helical; Name=5; (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		CTTTGCCGTTCCCTTCTCCAT	0.562													31	79					0	0	0.001512	0	0
UBE2F	140739	broad.mit.edu	37	2	238940868	238940868	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:238940868C>T	uc002vxk.2	+	8	508	c.417C>T	c.(415-417)GTC>GTT	p.V139V	UBE2F_uc010znn.1_Silent_p.V107V|UBE2F_uc002vxl.2_RNA|UBE2F_uc010zno.1_RNA|UBE2F_uc010znp.1_Intron|SCLY_uc002vxm.3_5'UTR	NM_080678	NP_542409	Q969M7	UBE2F_HUMAN	NEDD8-conjugating enzyme	139					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding				0		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;6.7e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|Kidney(56;3.53e-09)|KIRC - Kidney renal clear cell carcinoma(57;9.79e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000136)|Lung(119;0.0126)|LUSC - Lung squamous cell carcinoma(224;0.0301)		TTCAGGATGTCGTTTGGGGAT	0.338													12	53					0	0	0.00244969	0	0
KLHL30	377007	broad.mit.edu	37	2	239049740	239049740	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:239049740C>T	uc002vxr.1	+	1	324	c.291C>T	c.(289-291)TTC>TTT	p.F97F		NM_198582	NP_940984	Q0D2K2	KLH30_HUMAN	kelch-like 30	115											0		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GCCTGCACTTCCCCTCGGTGC	0.662													25	54					0	0	0.00047179	0	0
ANKMY1	51281	broad.mit.edu	37	2	241468854	241468854	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:241468854G>A	uc002vyz.1	-	4	515	c.286C>T	c.(286-288)CTG>TTG	p.L96L	ANKMY1_uc002vza.1_Intron|ANKMY1_uc010fzd.1_Silent_p.L185L|ANKMY1_uc002vzb.1_Intron|ANKMY1_uc002vzc.1_Intron|ANKMY1_uc002vzd.1_Intron|ANKMY1_uc010fze.1_Intron|ANKMY1_uc002vze.2_Intron	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	96							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		CGGAACCACAGCCCCACGTCC	0.607													12	17					0	0	0.000978159	0	0
DEFB125	245938	broad.mit.edu	37	20	76787	76787	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:76787G>A	uc002wcw.2	+	2	200	c.200G>A	c.(199-201)CGA>CAA	p.R67Q		NM_153325	NP_697020	Q8N687	DB125_HUMAN	defensin, beta 125 preproprotein	67					defense response to bacterium	extracellular region				ovary(1)|central_nervous_system(1)|skin(1)	3		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.156)			TATACTCGACGACCAGCATTT	0.368													45	125					0	0	0.000781405	0	0
SIRPG	55423	broad.mit.edu	37	20	1629872	1629872	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:1629872G>A	uc002wfm.1	-	2	321	c.256C>T	c.(256-258)CCC>TCC	p.P86S	SIRPG_uc002wfn.1_Missense_Mutation_p.P86S|SIRPG_uc002wfo.1_Missense_Mutation_p.P86S	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	86	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GTTACCCTGGGGAAGTGGCCT	0.517													30	71					0	0	0.00209593	0	0
TGM3	7053	broad.mit.edu	37	20	2320599	2320599	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:2320599G>A	uc002wfx.3	+	12	1997	c.1900G>A	c.(1900-1902)GGA>AGA	p.G634R		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	634					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GATGGTGGAGGGAAGCGGCCT	0.647													13	27					0	0	0.00185496	0	0
TGM6	343641	broad.mit.edu	37	20	2380222	2380222	+	Missense_Mutation	SNP	G	A	A	rs147591485	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:2380222G>A	uc002wfy.1	+	6	749	c.688G>A	c.(688-690)GAC>AAC	p.D230N	TGM6_uc010gal.1_Missense_Mutation_p.D230N	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	230					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	CAGCAACAACGACCGAGGTGT	0.622													22	74					0	0	0.000878237	0	0
ZNF343	79175	broad.mit.edu	37	20	2464423	2464423	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:2464423G>A	uc002wge.1	-	6	1672	c.1184C>T	c.(1183-1185)ACC>ATC	p.T395I	ZNF343_uc010gao.1_Missense_Mutation_p.T395I|ZNF343_uc002wgd.1_Missense_Mutation_p.T305I	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	395	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TTTTCTGAGGGTTGACTTATC	0.498													8	28					0	0	0.000274275	0	0
CPXM1	56265	broad.mit.edu	37	20	2775066	2775066	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:2775066C>T	uc002wgu.2	-	14	2039	c.1975G>A	c.(1975-1977)GAT>AAT	p.D659N	CPXM1_uc010gas.2_Missense_Mutation_p.D585N	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	659					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						CGCCAATAATCCCCGCCCCAC	0.597													16	39					0	0	0.000958276	0	0
FASTKD5	60493	broad.mit.edu	37	20	3128617	3128617	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:3128617T>C	uc002whz.2	-	2	1411	c.1100A>G	c.(1099-1101)CAC>CGC	p.H367R	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	367					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						GTGATCCACGTGAGTGAAACG	0.438													16	83					0	0	0.00152264	0	0
SLC4A11	83959	broad.mit.edu	37	20	3209569	3209569	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:3209569G>A	uc002wig.2	-	16	2203	c.2155C>T	c.(2155-2157)CAT>TAT	p.H719Y	SLC4A11_uc010zqe.1_Missense_Mutation_p.H746Y|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Missense_Mutation_p.H703Y	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	719	Helical; (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						TAGGCGGCATGGATCCAAGGC	0.622													22	52					0	0	0.000878237	0	0
C20orf194	25943	broad.mit.edu	37	20	3277588	3277588	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:3277588G>A	uc002wii.2	-	23	1989	c.1938C>T	c.(1936-1938)TCC>TCT	p.S646S	C20orf194_uc002wij.3_Silent_p.S385S|C20orf194_uc002wik.2_Silent_p.S320S	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	646											0						GTTTCCAGAGGGAGAAGACCT	0.398													55	175					0	0	0.000781405	0	0
ATRN	8455	broad.mit.edu	37	20	3565495	3565495	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:3565495G>A	uc002wim.2	+	18	3242	c.3152G>A	c.(3151-3153)AGC>AAC	p.S1051N	ATRN_uc002wil.2_Missense_Mutation_p.S1051N	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	1051	Extracellular (Potential).|PSI 4.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						CTAGAGGACAGCAGATACAAC	0.433													22	65					0	0	0.000586117	0	0
CHGB	1114	broad.mit.edu	37	20	5904063	5904063	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:5904063G>A	uc002wmg.2	+	4	1579	c.1273G>A	c.(1273-1275)GAG>AAG	p.E425K	CHGB_uc010zqz.1_Missense_Mutation_p.E108K	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	425						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CAGGGGAGGGGAGCCACGTGC	0.527													23	57					0	0	0.000586117	0	0
PLCB1	23236	broad.mit.edu	37	20	8862337	8862337	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:8862337C>T	uc002wnb.2	+	32	3495	c.3492C>T	c.(3490-3492)TTC>TTT	p.F1164F	PLCB1_uc002wna.2_3'UTR	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1164					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TTTTGGAATTCGTGCAGGAAG	0.493													54	132					0	0	0.000781405	0	0
PLCB4	5332	broad.mit.edu	37	20	9459612	9459612	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:9459612C>T	uc002wnf.2	+	37	3640	c.3504C>T	c.(3502-3504)GAC>GAT	p.D1168D	PLCB4_uc010gbx.2_Silent_p.D1180D|PLCB4_uc002wne.2_Missense_Mutation_p.P1181S|PLCB4_uc002wnh.2_Silent_p.D1015D	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1168					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CCGAGATGGACCGCAGACCAG	0.438													13	27					0	0	0.000422831	0	0
ANKRD5	63926	broad.mit.edu	37	20	10030492	10030492	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:10030492G>A	uc002wno.2	+	7	1668	c.1275G>A	c.(1273-1275)AAG>AAA	p.K425K	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Silent_p.K425K|ANKRD5_uc010gbz.2_Silent_p.K236K	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	425							calcium ion binding			ovary(1)|breast(1)	2						AAAAAGGAAAGAAAGGGAAAT	0.413													24	54					0	0	0.000720815	0	0
MKKS	8195	broad.mit.edu	37	20	10393417	10393417	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:10393417G>A	uc002wnt.1	-	3	1633	c.746C>T	c.(745-747)TCC>TTC	p.S249F	MKKS_uc002wnu.1_Missense_Mutation_p.S249F|MKKS_uc010zrd.1_Intron	NM_018848	NP_061336	Q9NPJ1	MKKS_HUMAN	McKusick-Kaufman syndrome protein	249	Substrate-binding apical domain.				brain morphogenesis|cerebral cortex development|convergent extension involved in gastrulation|detection of mechanical stimulus involved in sensory perception of sound|fat cell differentiation|flagellum assembly|gonad development|heart looping|hippocampus development|intracellular transport|melanosome transport|photoreceptor cell maintenance|pigment granule aggregation in cell center|protein folding|regulation of cilium beat frequency involved in ciliary motility|sensory perception of smell|social behavior|spermatid development|striatum development	cytosol|microtubule organizing center|motile cilium	ATP binding|unfolded protein binding				0						AGTGTCTCCGGATAAAGTTGT	0.438									Bardet-Biedl_syndrome				18	62					0	0	0.00121646	0	0
JAG1	182	broad.mit.edu	37	20	10653563	10653563	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:10653563G>A	uc002wnw.2	-	2	689	c.173C>T	c.(172-174)GCC>GTC	p.A58V		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	58	Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						CGGGTTCCGGGCGCCGCCGCA	0.657									Alagille_Syndrome				21	40					0	0	0.00188189	0	0
ISM1	140862	broad.mit.edu	37	20	13251208	13251208	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:13251208G>A	uc010gce.1	+	2	202	c.196G>A	c.(196-198)GAA>AAA	p.E66K	TASP1_uc010zri.1_Intron	NM_080826	NP_543016	B1AKI9	ISM1_HUMAN	isthmin 1 homolog precursor	66						extracellular region					0						TCTCTCCAAAGAAGCACCAAG	0.493													8	27					0	0	0.000673444	0	0
FLRT3	23767	broad.mit.edu	37	20	14307645	14307645	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:14307645G>A	uc002wov.1	-	3	975	c.508C>T	c.(508-510)CCC>TCC	p.P170S	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.P170S	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	170	Extracellular (Potential).|LRR 5.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		AAACCCCAGGGAATTGTGCTA	0.458													17	50					0	0	0.00074312	0	0
PCSK2	5126	broad.mit.edu	37	20	17446151	17446151	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:17446151C>T	uc002wpm.2	+	11	1703	c.1383C>T	c.(1381-1383)ACC>ACT	p.T461T	PCSK2_uc002wpl.2_Silent_p.T442T|PCSK2_uc010zrm.1_Silent_p.T426T|PCSK2_uc002wpn.2_Silent_p.T115T	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	461					enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACTGGAAAACCGTGCCTGAGA	0.567													6	26					0	0	0.00198382	0	0
RRBP1	6238	broad.mit.edu	37	20	17596138	17596138	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:17596138C>T	uc002wpv.1	-	24	3043	c.2689G>A	c.(2689-2691)GAG>AAG	p.E897K	RRBP1_uc010zrp.1_Missense_Mutation_p.E70K|RRBP1_uc002wpt.1_Missense_Mutation_p.E267K|RRBP1_uc002wpu.2_Missense_Mutation_p.E671K|RRBP1_uc002wpw.1_Missense_Mutation_p.E897K|RRBP1_uc010gcl.1_Missense_Mutation_p.E671K	NM_001042576	NP_001036041	Q9P2E9	RRBP1_HUMAN	ribosome binding protein 1	1330	Cytoplasmic (Potential).				protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						CGGAGCTTCTCCAATTCTTCT	0.602													10	32					0	0	0.00185496	0	0
C20orf72	92667	broad.mit.edu	37	20	17950806	17950806	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:17950806C>T	uc002wqh.2	+	2	386	c.304C>T	c.(304-306)CCT>TCT	p.P102S	C20orf72_uc010gco.2_RNA|C20orf72_uc010gcp.2_Intron|SNX5_uc002wqc.2_5'Flank|SNX5_uc002wqd.2_5'Flank|SNX5_uc002wqe.2_5'Flank|SNX5_uc010zrt.1_5'Flank|SNX5_uc010gcn.1_5'Flank	NM_052865	NP_443097	Q9BQP7	CT072_HUMAN	hypothetical protein LOC92667	102											0						AAACTGGTTTCCTATCTTCAA	0.488													30	96					0	0	0.00127121	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18163816	18163816	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:18163816C>T	uc002wqj.2	+	9	2480	c.1858C>T	c.(1858-1860)CGT>TGT	p.R620C	CSRP2BP_uc002wqk.2_Missense_Mutation_p.R492C|CSRP2BP_uc010zru.1_Missense_Mutation_p.R491C	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	620					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						GTCACAGATTCGTTCCCACCT	0.507													44	83					0	0	0.000680045	0	0
RIN2	54453	broad.mit.edu	37	20	19981499	19981499	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:19981499C>T	uc002wro.1	+	11	2643	c.2607C>T	c.(2605-2607)TTC>TTT	p.F869F	RIN2_uc010gcu.1_Silent_p.F436F|RIN2_uc010gcv.1_Silent_p.F663F	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	869	Ras-associating.				endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						CCCACATCTTCCACTTTGTCT	0.522													10	46					0	0	0.000673444	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033087	20033087	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:20033087G>A	uc002wrs.2	-	2	415	c.383C>T	c.(382-384)TCC>TTC	p.S128F	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Missense_Mutation_p.S116F	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	128					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						AAACAAACAGGATCTCGGAAC	0.587													23	67					0	0	0.00047179	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20484046	20484046	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:20484046G>A	uc002wrz.2	-	35	5300	c.5157C>T	c.(5155-5157)TTC>TTT	p.F1719F	RALGAPA2_uc010gcx.2_Silent_p.F1423F|RALGAPA2_uc010zsg.1_Silent_p.F1167F|RALGAPA2_uc002wsa.1_Silent_p.F491F	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1719	Rap-GAP.				activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TGGAAACATGGAAAATCACTT	0.542													23	48					0	0	0.000586117	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20501698	20501698	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:20501698C>T	uc002wrz.2	-	31	4090	c.3947G>A	c.(3946-3948)AGT>AAT	p.S1316N	RALGAPA2_uc010gcx.2_Missense_Mutation_p.S1020N|RALGAPA2_uc010zsg.1_Missense_Mutation_p.S764N|RALGAPA2_uc002wsa.1_Missense_Mutation_p.S88N	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1316					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TATGTAGTGACTCTGTTGGGT	0.532													19	83					0	0	0.00047179	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20592019	20592019	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:20592019C>T	uc002wrz.2	-	14	1883	c.1740G>A	c.(1738-1740)AAG>AAA	p.K580K	RALGAPA2_uc010gcx.2_Silent_p.K284K|RALGAPA2_uc010zsg.1_Intron	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	580					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TATCCTTTGGCTTCTGCATGA	0.393													101	285					0	0	0.000781405	0	0
FOXA2	3170	broad.mit.edu	37	20	22563420	22563421	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:22563420_22563421GG>AA	uc002wsn.2	-	3	631_632	c.441_442CC>TT	c.(439-444)GACCCC>GATTCC	p.P148S	FOXA2_uc002wsm.2_Missense_Mutation_p.P154S	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	148					cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					TAGGTCTTGGGGTCGCGGGCGC	0.678													29	102					0	0	6.4e-05	0	0
SSTR4	6754	broad.mit.edu	37	20	23017048	23017048	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:23017048C>T	uc002wsr.2	+	1	992	c.928C>T	c.(928-930)CTC>TTC	p.L310F		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	310	Helical; Name=7; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CAACCCCATTCTCTATGGCTT	0.597													52	153					0	0	0.000781405	0	0
TMEM90B	79953	broad.mit.edu	37	20	24523919	24523919	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:24523919G>A	uc002wtw.1	+	2	819	c.186G>A	c.(184-186)CTG>CTA	p.L62L		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	62	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CGGCCAGCCTGGACAGCAGCA	0.627													21	45					0	0	0.00188189	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524006	24524006	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:24524006C>T	uc002wtw.1	+	2	906	c.273C>T	c.(271-273)ATC>ATT	p.I91I		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	91	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						GGCCCAACATCATCCTCTATT	0.657													18	59					0	0	0.00074312	0	0
ZNF337	26152	broad.mit.edu	37	20	25656527	25656528	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:25656527_25656528CC>TT	uc002wva.2	-	4	1918_1919	c.1396_1397GG>AA	c.(1396-1398)GGA>AAA	p.G466K	uc002wuz.2_RNA|ZNF337_uc010ztg.1_Missense_Mutation_p.G434K|ZNF337_uc002wvb.2_Missense_Mutation_p.G466K|ZNF337_uc002wvc.2_Missense_Mutation_p.G466K	NM_015655	NP_056470	Q9Y3M9	ZN337_HUMAN	zinc finger protein 337	466	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTCGTCCACAGTCCTTG	0.47													19	91					0	0	6.4e-05	0	0
MYLK2	85366	broad.mit.edu	37	20	30411356	30411356	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:30411356C>T	uc002wwq.2	+	5	951	c.849C>T	c.(847-849)TTC>TTT	p.F283F		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	283					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GCAGTGAATTCAGTATGAACT	0.612											OREG0025856	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	114					0	0	0.000814825	0	0
POFUT1	23509	broad.mit.edu	37	20	30816069	30816069	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:30816069T>G	uc002wxp.2	+	5	595	c.546T>G	c.(544-546)TTT>TTG	p.F182L	POFUT1_uc010ztt.1_Missense_Mutation_p.F74L|POFUT1_uc010ztu.1_5'UTR	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	182					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TGTCTAGATTTTCTCCAAAGG	0.572													11	32					0	0	0.000673444	0	0
DNMT3B	1789	broad.mit.edu	37	20	31386272	31386272	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:31386272C>T	uc002wyc.2	+	15	1818	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Silent_p.F479F|DNMT3B_uc002wye.2_Silent_p.F479F|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Silent_p.F437F|DNMT3B_uc010zua.1_Silent_p.F403F|DNMT3B_uc002wyf.2_Silent_p.F491F|DNMT3B_uc002wyg.2_Silent_p.F198F|DNMT3B_uc010geg.2_5'Flank|DNMT3B_uc010geh.2_5'Flank	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	499	PHD-type; atypical.|Interaction with the PRC2/EED-EZH2 complex (By similarity).|ADD.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						CCAGGTGTTTCTGTGTGGAGT	0.622													11	49					0	0	0.00185496	0	0
ZNF341	84905	broad.mit.edu	37	20	32328773	32328773	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:32328773C>T	uc002wzy.2	+	2	117	c.97C>T	c.(97-99)CCG>TCG	p.P33S	ZNF341_uc002wzx.2_Missense_Mutation_p.P33S|ZNF341_uc010geq.2_Silent_p.I8I|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	33					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AGTCCCTGATCCGACAGGCCA	0.547													21	79					0	0	0.00047179	0	0
ZNF341	84905	broad.mit.edu	37	20	32332928	32332928	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:32332928C>T	uc002wzy.2	+	3	182	c.162C>T	c.(160-162)CTC>CTT	p.L54L	ZNF341_uc002wzx.2_Silent_p.L54L|ZNF341_uc010geq.2_Intron|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	54	C2H2-type 1; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATGTATTTCTCTGCGGGAAGT	0.517													26	100					0	0	0.001512	0	0
NCOA6	23054	broad.mit.edu	37	20	33328277	33328277	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:33328277G>A	uc002xav.2	-	12	8354	c.5783C>T	c.(5782-5784)TCC>TTC	p.S1928F	NCOA6_uc002xaw.2_Missense_Mutation_p.S1928F	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1928	EP300/CRSP3-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CGGTACGGCGGAGATGAGCTC	0.587													10	30					0	0	0.000978159	0	0
MYH7B	57644	broad.mit.edu	37	20	33575008	33575008	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:33575008C>T	uc002xbi.1	+	14	1283	c.1191C>T	c.(1189-1191)ATC>ATT	p.I397I		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	355	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			GCTATAAGATCGTGGGCGCCC	0.597													31	135					0	0	0.00209593	0	0
FAM83C	128876	broad.mit.edu	37	20	33875448	33875448	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:33875448G>A	uc010zux.1	-	4	1252	c.1134C>T	c.(1132-1134)TCC>TCT	p.S378S	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Intron	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	378										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CCAGGGACGAGGACACCACAC	0.632													7	33					0	0	0.000274275	0	0
FAM83C	128876	broad.mit.edu	37	20	33880001	33880001	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:33880001G>A	uc010zux.1	-	1	225	c.107C>T	c.(106-108)CCG>CTG	p.P36L	FAM83C_uc002xcb.1_5'UTR	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	36										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CAGCACCAGCGGTGAGCTCTC	0.756													9	30					0	0	0.00185496	0	0
CEP250	11190	broad.mit.edu	37	20	34092342	34092342	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:34092342G>A	uc002xcm.2	+	31	6816	c.6145G>A	c.(6145-6147)GAA>AAA	p.E2049K	CEP250_uc010zve.1_Missense_Mutation_p.E1417K	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	2049	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CCAGAGGGATGAAGAGCTGAG	0.562													11	40					0	0	0.00136819	0	0
LBP	3929	broad.mit.edu	37	20	36993332	36993332	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:36993332G>A	uc002xic.1	+	8	882	c.847G>A	c.(847-849)GAT>AAT	p.D283N		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	283					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				TGCCATCTCGGATTATGTCTT	0.468													72	146					0	0	0.000781405	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991348	39991348	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:39991348C>T	uc002xjy.1	-	4	1085	c.861G>A	c.(859-861)CGG>CGA	p.R287R		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	287						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GTGGGGCTTCCCGCAGCCGCT	0.642													8	33					0	0	0.000157383	0	0
PTPRT	11122	broad.mit.edu	37	20	40748582	40748582	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:40748582C>T	uc002xkg.2	-	20	3061	c.2877G>A	c.(2875-2877)GCG>GCA	p.A959A	PTPRT_uc010ggj.2_Silent_p.A978A|PTPRT_uc010ggi.2_Silent_p.A162A	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	959	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TACCTTGAGTCGCAATGTAGT	0.507													28	93					0	0	0.0024448	0	0
PTPRT	11122	broad.mit.edu	37	20	41419927	41419927	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:41419927C>T	uc002xkg.2	-	3	578	c.394G>A	c.(394-396)GGG>AGG	p.G132R	PTPRT_uc010ggj.2_Missense_Mutation_p.G132R	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	132	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACAGGGTTCCCTTGGGGGCCA	0.572													21	61					0	0	0.00121646	0	0
L3MBTL	26013	broad.mit.edu	37	20	42164515	42164515	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:42164515C>T	uc010zwh.1	+	17	1844	c.1798C>T	c.(1798-1800)CCC>TCC	p.P600S	L3MBTL_uc002xkl.2_Missense_Mutation_p.P532S|L3MBTL_uc002xkm.2_Missense_Mutation_p.P532S|L3MBTL_uc010ggl.2_Missense_Mutation_p.P532S|L3MBTL_uc002xkn.1_Missense_Mutation_p.P291S|L3MBTL_uc002xko.2_Missense_Mutation_p.P184S	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	532					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TGGGGGCTGTCCCCCTCTCAG	0.612													23	76					0	0	0.00283554	0	0
GTSF1L	149699	broad.mit.edu	37	20	42355301	42355301	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:42355301C>T	uc002xld.2	-	1	342	c.34G>A	c.(34-36)GAT>AAT	p.D12N	GTSF1L_uc002xlc.2_Missense_Mutation_p.D12N	NM_176791	NP_789761	Q9H1H1	GTSFL_HUMAN	gametocyte specific factor 1-like isoform 1	12	CHHC-type.						metal ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TGGTGAGGATCATAAGGGCAA	0.483													47	158					0	0	0.000781405	0	0
KCNS1	3787	broad.mit.edu	37	20	43723895	43723895	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:43723895C>T	uc002xnc.2	-	5	1594	c.1197G>A	c.(1195-1197)AAG>AAA	p.K399K	KCNS1_uc002xnd.2_Silent_p.K399K	NM_002251	NP_002242	Q96KK3	KCNS1_HUMAN	potassium voltage-gated channel	399						voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity|protein binding				0		Myeloproliferative disorder(115;0.0122)				CGTCCTCCTCCTTTTCAGCTG	0.582													12	34					0	0	0.00185496	0	0
TP53TG5	27296	broad.mit.edu	37	20	44005959	44005959	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:44005959C>T	uc002xny.2	-	3	228	c.147G>A	c.(145-147)TTG>TTA	p.L49L	SYS1-DBNDD2_uc002xnx.2_Intron	NM_014477	NP_055292	Q9Y2B4	T53G5_HUMAN	TP53-target gene 5 protein	49					intracellular signal transduction|negative regulation of cell growth	cytoplasm|nucleus				central_nervous_system(1)	1						TGAGTAGCTTCAAGAGCGACA	0.507													69	182					0	0	0.000781405	0	0
WFDC3	140686	broad.mit.edu	37	20	44416612	44416612	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:44416612C>T	uc002xpf.1	-	4	305	c.221G>A	c.(220-222)AGA>AAA	p.R74K	WFDC3_uc002xpj.1_RNA|WFDC3_uc002xph.1_RNA|WFDC3_uc010ghh.1_RNA	NM_080614	NP_542181	Q8IUB2	WFDC3_HUMAN	WAP four-disulfide core domain 3 precursor	74	WAP 2.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				AGGGCAATCTCTTTTCCTCCC	0.323													14	34					0	0	0.000308642	0	0
SLC12A5	57468	broad.mit.edu	37	20	44680505	44680505	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:44680505C>T	uc010zxl.1	+	18	2518	c.2442C>T	c.(2440-2442)TTC>TTT	p.F814F	SLC12A5_uc002xrb.2_Silent_p.F791F	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	814					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GGAGGAACTTCATTGGTAACG	0.622													22	49					0	0	0.00229938	0	0
SLC13A3	64849	broad.mit.edu	37	20	45239155	45239155	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:45239155G>A	uc002xsf.1	-	3	509	c.471C>T	c.(469-471)GCC>GCT	p.A157A	SLC13A3_uc010ghn.1_Silent_p.A126A|SLC13A3_uc010zxw.1_Silent_p.A157A|SLC13A3_uc002xsg.1_Silent_p.A110A|SLC13A3_uc010gho.1_Silent_p.A110A|SLC13A3_uc010zxx.1_Silent_p.A59A|SLC13A3_uc002xsi.3_Silent_p.A110A	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	157	Helical; (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	TTTTCAGGATGGCATTGGCAA	0.552													50	142					0	0	0.000781405	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354776	45354776	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:45354776C>T	uc002xsl.2	+	2	1198	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	367	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GGGAGCCAATCTTGTCCACTG	0.627													19	52					0	0	0.00121646	0	0
NCOA3	8202	broad.mit.edu	37	20	46256410	46256410	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:46256410C>T	uc002xtk.2	+	7	843	c.638C>T	c.(637-639)GCC>GTC	p.A213V	NCOA3_uc010ght.1_Missense_Mutation_p.A213V|NCOA3_uc002xtl.2_Missense_Mutation_p.A213V|NCOA3_uc002xtm.2_Missense_Mutation_p.A213V|NCOA3_uc002xtn.2_Missense_Mutation_p.A213V|NCOA3_uc010zyc.1_Missense_Mutation_p.A15V	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	213					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						GACATAAACGCCAGTCCTGAA	0.433													29	79					0	0	0.00127121	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47626796	47626796	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:47626796C>T	uc002xtx.3	+	27	3764	c.3612C>T	c.(3610-3612)ATC>ATT	p.I1204I	ARFGEF2_uc010zyf.1_Silent_p.I497I	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1204					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			ACATGGCGATCCGCTGCATTG	0.542													31	79					0	0	0.00178596	0	0
DDX27	55661	broad.mit.edu	37	20	47858706	47858706	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:47858706C>T	uc002xuh.2	+	18	2233	c.2172C>T	c.(2170-2172)GCC>GCT	p.A724A		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	724						nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCAAGCGGGCCCGAGCAATGC	0.567													9	39					0	0	0.000274275	0	0
KCNB1	3745	broad.mit.edu	37	20	47990206	47990206	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:47990206C>T	uc002xur.1	-	2	2055	c.1891G>A	c.(1891-1893)GGT>AGT	p.G631S	KCNB1_uc002xus.1_Missense_Mutation_p.G631S	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	631	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCACTGGCACCCAGAGCTCCC	0.592													14	28					0	0	0.00185496	0	0
KCNB1	3745	broad.mit.edu	37	20	47990589	47990589	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:47990589G>A	uc002xur.1	-	2	1672	c.1508C>T	c.(1507-1509)TCC>TTC	p.S503F	KCNB1_uc002xus.1_Missense_Mutation_p.S503F	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	503	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GGTTTCAAAGGACTTACTTGA	0.428													66	157					0	0	0.000781405	0	0
KCNB1	3745	broad.mit.edu	37	20	47990818	47990818	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:47990818C>T	uc002xur.1	-	2	1443	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K	KCNB1_uc002xus.1_Missense_Mutation_p.E427K	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	427	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ATTGCTTTCTCCTGTCTCTTC	0.502													33	93					0	0	0.000692331	0	0
ATP9A	10079	broad.mit.edu	37	20	50273611	50273611	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:50273611C>T	uc002xwg.1	-	14	1372	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K	ATP9A_uc010gih.1_Missense_Mutation_p.E322K|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	458	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						TTCACGGCTTCGTGCACGCGG	0.597													18	26					0	0	0.000958276	0	0
ZNF217	7764	broad.mit.edu	37	20	52198664	52198664	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:52198664G>A	uc002xwq.3	-	1	973	c.702C>T	c.(700-702)CAC>CAT	p.H234H	ZNF217_uc010gij.1_Silent_p.H226H	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	234	C2H2-type 4.				negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			GCACCTTGCGGTGCTCAATTA	0.522													56	126					0	0	0.000781405	0	0
ZNF831	128611	broad.mit.edu	37	20	57769282	57769282	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:57769282G>A	uc002yan.2	+	1	3208	c.3208G>A	c.(3208-3210)GGT>AGT	p.G1070S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1070						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGACATGGAGGGTGACAGCCA	0.622													12	18					0	0	0.00185496	0	0
PPP1R3D	5509	broad.mit.edu	37	20	58514273	58514273	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:58514273G>A	uc002ybb.2	-	1	1080	c.714C>T	c.(712-714)TTC>TTT	p.F238F	C20orf177_uc002yba.2_Intron|C20orf177_uc010zzx.1_5'Flank|C20orf177_uc002ybc.2_5'Flank	NM_006242	NP_006233	O95685	PPR3D_HUMAN	protein phosphatase 1, regulatory subunit 3D	238	CBM21.				glycogen metabolic process		protein binding|protein serine/threonine phosphatase activity				0	all_lung(29;0.00391)		BRCA - Breast invasive adenocarcinoma(7;5.12e-09)			CTGGAAAGCCGAAGGTGAAAA	0.687													15	34					0	0	0.000566183	0	0
C20orf177	63939	broad.mit.edu	37	20	58519530	58519530	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:58519530C>T	uc002yba.2	+	5	947	c.532C>T	c.(532-534)CTT>TTT	p.L178F	C20orf177_uc010zzx.1_Missense_Mutation_p.L21F|C20orf177_uc002ybc.2_Missense_Mutation_p.L178F	NM_022106	NP_071389	Q9NTX9	CT177_HUMAN	hypothetical protein LOC63939	178										ovary(2)|breast(1)	3	all_lung(29;0.00693)		BRCA - Breast invasive adenocarcinoma(7;1.22e-08)			GGGAGGACTTCTTGGGAAGTA	0.532													20	43					0	0	0.000586117	0	0
CDH4	1002	broad.mit.edu	37	20	60503423	60503423	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:60503423C>T	uc002ybn.1	+	12	1961	c.1947C>T	c.(1945-1947)TTC>TTT	p.F649F	CDH4_uc002ybp.1_Silent_p.F575F	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	649	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CCTACGTCTTCGAGCTGCCCT	0.657													9	99					0	0	0.000442599	0	0
LAMA5	3911	broad.mit.edu	37	20	60902685	60902685	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:60902685C>T	uc002ycq.2	-	37	4905	c.4838G>A	c.(4837-4839)GGG>GAG	p.G1613E		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1613	Laminin EGF-like 15.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGAGAAGGTCCCAAGGCTGCA	0.642													5	49					0	0	0.00116845	0	0
KCNQ2	3785	broad.mit.edu	37	20	62046333	62046333	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:62046333C>T	uc002yey.1	-	13	1625	c.1448G>A	c.(1447-1449)AGC>AAC	p.S483N	KCNQ2_uc002yez.1_Missense_Mutation_p.S453N|KCNQ2_uc002yfa.1_Missense_Mutation_p.S465N|KCNQ2_uc002yfb.1_Missense_Mutation_p.S455N	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	483	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	GAAGCTCCAGCTCTTGGGCAC	0.692													10	90					0	0	0.00136819	0	0
PRIC285	85441	broad.mit.edu	37	20	62201921	62201921	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:62201921G>A	uc002yfm.2	-	4	1398	c.506C>T	c.(505-507)CCC>CTC	p.P169L	PRIC285_uc002yfl.1_5'Flank|PRIC285_uc002yfn.2_Missense_Mutation_p.P169L	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	169					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GTACATCAGGGGCTGGTTGCA	0.632													11	69					0	0	0.00136819	0	0
STMN3	50861	broad.mit.edu	37	20	62275163	62275163	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:62275163G>A	uc002yfr.1	-	3	319	c.237C>T	c.(235-237)GAC>GAT	p.D79D	STMN3_uc011abb.1_Silent_p.D79D	NM_015894	NP_056978	Q9NZ72	STMN3_HUMAN	SCG10-like-protein	79	Potential.				cytoplasmic microtubule organization|intracellular signal transduction|negative regulation of Rac protein signal transduction|neuron projection development|regulation of cytoskeleton organization|regulation of Rac GTPase activity	cytoplasm	protein domain specific binding				0	all_cancers(38;2.31e-11)|all_epithelial(29;7.76e-13)		Epithelial(9;1.9e-09)|all cancers(9;1.22e-08)|BRCA - Breast invasive adenocarcinoma(10;8.86e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.00559)			CCAGGGAGGTGTCCTTCTTCT	0.632													9	104					0	0	0.000442599	0	0
ZGPAT	84619	broad.mit.edu	37	20	62365021	62365021	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:62365021C>T	uc002ygk.2	+	4	979	c.801C>T	c.(799-801)CCC>CCT	p.P267P	ZGPAT_uc002ygi.2_Silent_p.P267P|ZGPAT_uc002ygj.2_Silent_p.P267P|ZGPAT_uc010gkk.1_Intron|ZGPAT_uc010gkl.1_Silent_p.P267P|ZGPAT_uc002ygm.2_Silent_p.P267P|ZGPAT_uc002ygn.3_RNA|LIME1_uc011abi.1_5'Flank|LIME1_uc002ygp.3_5'Flank	NM_032527	NP_115916	Q8N5A5	ZGPAT_HUMAN	zinc finger, CCCH-type with G patch domain	267					negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					GCATCCTGCCCCCACTGCGCA	0.637													47	74					0	0	0.000781405	0	0
PRPF6	24148	broad.mit.edu	37	20	62642815	62642815	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:62642815C>A	uc002yho.2	+	11	1651	c.1483C>A	c.(1483-1485)CGG>AGG	p.R495R	PRPF6_uc002yhp.2_Silent_p.R495R	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	495					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					CACCTCGCTGCGGGCCAACGG	0.582													5	16					1.23904e-05	4.3736e-05	0.000602214	1	0
LIPI	149998	broad.mit.edu	37	21	15538756	15538756	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:15538756C>T	uc002yjm.2	-	5	733	c.723G>A	c.(721-723)GAG>GAA	p.E241E	LIPI_uc010gkw.1_Intron	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	220					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GTCCCAAGGGCTCTTGAATGC	0.353													13	63					0	0	0.00244969	0	0
RBM11	54033	broad.mit.edu	37	21	15599441	15599441	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:15599441G>A	uc002yjo.3	+	5	715	c.673G>A	c.(673-675)GGA>AGA	p.G225R	RBM11_uc002yjn.3_Missense_Mutation_p.G111R|RBM11_uc002yjp.3_Missense_Mutation_p.G111R	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11	225							nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		TCTTGAGGCTGGACCCAGCTC	0.428													33	194					0	0	0.00195071	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19744528	19744528	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:19744528C>T	uc002ykw.2	-	6	677	c.646G>A	c.(646-648)GAA>AAA	p.E216K		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	216	Extracellular (Potential).|LDL-receptor class A 1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TTATTGTCTTCGTCAGAACCA	0.373													8	42					0	0	0.000978159	0	0
CYYR1	116159	broad.mit.edu	37	21	27852626	27852626	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:27852626C>T	uc002ymd.2	-	3	621	c.299G>A	c.(298-300)AGG>AAG	p.R100K	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Missense_Mutation_p.R100K	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	100	Cytoplasmic (Potential).					integral to membrane					0						GTGAGTCGTCCTGAGGATGCC	0.502													11	33					0	0	0.00185496	0	0
TIAM1	7074	broad.mit.edu	37	21	32638597	32638597	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:32638597G>A	uc002yow.1	-	5	1164	c.692C>T	c.(691-693)TCC>TTC	p.S231F	TIAM1_uc011adk.1_Missense_Mutation_p.S231F|TIAM1_uc011adl.1_Missense_Mutation_p.S231F|TIAM1_uc002yox.1_Intron	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	231					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GTCACCCAAGGAATTGGCTCT	0.562													16	70					0	0	0.000566183	0	0
SYNJ1	8867	broad.mit.edu	37	21	34003965	34003966	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:34003965_34003966CC>TT	uc002yqh.2	-	32	4178_4179	c.4178_4179GG>AA	c.(4177-4179)AGG>AAA	p.R1393K	SYNJ1_uc011ads.1_3'UTR|SYNJ1_uc002yqf.2_3'UTR|SYNJ1_uc002yqg.2_Missense_Mutation_p.R1307K|SYNJ1_uc002yqi.2_3'UTR|SYNJ1_uc002yqe.3_5'UTR	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1354	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						ACTGAATCAACCTCTTTGGGTC	0.446													10	56					0	0	6.4e-05	0	0
SON	6651	broad.mit.edu	37	21	34926081	34926081	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:34926081C>T	uc002yse.1	+	3	4593	c.4544C>T	c.(4543-4545)GCT>GTT	p.A1515V	SON_uc002ysb.1_Missense_Mutation_p.A1515V|SON_uc002ysc.2_Missense_Mutation_p.A1515V|SON_uc002ysd.2_Missense_Mutation_p.A506V|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.A506V	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	1515					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						GAACCACATGCTGAGGAACAC	0.353													8	38					0	0	0.000157383	0	0
HLCS	3141	broad.mit.edu	37	21	38132112	38132112	+	Missense_Mutation	SNP	C	T	T	rs119103228		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:38132112C>T	uc010gnb.2	-	9	2912	c.1711G>A	c.(1711-1713)GAT>AAT	p.D571N	HLCS_uc002yvs.2_Missense_Mutation_p.D571N	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	571			D -> N (in HLCS deficiency; almost no activity).		cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	TAATAAATATCGTTGGGCCAC	0.418													23	111					0	0	0.000720815	0	0
DSCAM	1826	broad.mit.edu	37	21	41516654	41516654	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:41516654G>A	uc002yyq.1	-	17	3475	c.3023C>T	c.(3022-3024)CCC>CTC	p.P1008L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1008	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATGTTTCTTGGGAGCCTAAAC	0.443													5	19					0	0	0.00198382	0	0
DSCAM	1826	broad.mit.edu	37	21	41711258	41711258	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:41711258C>T	uc002yyq.1	-	7	1747	c.1295G>A	c.(1294-1296)GGA>GAA	p.G432E	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	432	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAAAGGTGTTCCCTTCACGTT	0.522													4	17					0	0	0.00024832	0	0
DSCAM	1826	broad.mit.edu	37	21	41725476	41725476	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:41725476G>A	uc002yyq.1	-	5	1302	c.850C>T	c.(850-852)CGC>TGC	p.R284C	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	284	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCCGAGGGGCGAATGTTCTCA	0.542													13	59					0	0	0.00185496	0	0
DNMT3L	29947	broad.mit.edu	37	21	45671536	45671536	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:45671536G>A	uc002zeg.1	-	9	1223	c.739C>T	c.(739-741)CCC>TCC	p.P247S	DNMT3L_uc002zeh.1_Missense_Mutation_p.P247S	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	247					DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		TGGCCCAGGGGAGGTGTGGCG	0.642													20	89					0	0	0.000586117	0	0
AIRE	326	broad.mit.edu	37	21	45706459	45706459	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:45706459A>T	uc002zei.2	+	2	279	c.152A>T	c.(151-153)GAA>GTA	p.E51V		NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	51	HSR.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		CATCTGAAGGAAAAGGAGGGC	0.632									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				17	44					0	0	0.00074312	0	0
C21orf29	54084	broad.mit.edu	37	21	45948356	45948356	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:45948356C>T	uc002zfe.1	-	6	967	c.901G>A	c.(901-903)GAG>AAG	p.E301K	C21orf29_uc010gpv.1_Missense_Mutation_p.E233K	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	301					cell adhesion	extracellular region	structural molecule activity				0						GAGACCCACTCGTTGCCAACA	0.632													28	123					0	0	0.001512	0	0
KRTAP10-2	386679	broad.mit.edu	37	21	45970616	45970616	+	Silent	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:45970616T>A	uc002zfi.1	-	1	773	c.726A>T	c.(724-726)CCA>CCT	p.P242P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	keratin associated protein 10-2	242						keratin filament				large_intestine(1)	1						TGCAGGAGGCTGGGCGGGAGC	0.667													19	67					0	0	0.00152264	0	0
KRTAP10-9	386676	broad.mit.edu	37	21	46047310	46047310	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:46047310C>T	uc002zfp.3	+	1	271	c.222C>T	c.(220-222)TCC>TCT	p.S74S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	74	25 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCACCAGCTCCTGCACGCCCT	0.532													26	99					0	0	0.00209593	0	0
KRTAP12-3	386683	broad.mit.edu	37	21	46078040	46078040	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:46078040C>T	uc002zft.2	+	1	192	c.144C>T	c.(142-144)CCC>CCT	p.P48P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198697	NP_941970	P60328	KR123_HUMAN	keratin associated protein 12-3	48	6.|14 X 5 AA approximate repeats.					intermediate filament				central_nervous_system(1)	1						GCGTGGCTCCCTCCTGCCAGC	0.647													15	93					0	0	0.000308642	0	0
COL18A1	80781	broad.mit.edu	37	21	46916446	46916446	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:46916446C>T	uc011afs.1	+	29	3807	c.3786C>T	c.(3784-3786)CCC>CCT	p.P1262P	COL18A1_uc002zhg.2_Silent_p.P847P|COL18A1_uc002zhi.2_Silent_p.P1027P	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	1262	Triple-helical region 6 (COL6).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CTCCAGGGCCCCCAGGCCCTC	0.642													15	87					0	0	0.00121646	0	0
FTCD	10841	broad.mit.edu	37	21	47570436	47570436	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:47570436C>T	uc002zif.2	-	6	684	c.640G>A	c.(640-642)GGA>AGA	p.G214R	FTCD_uc002zig.2_Missense_Mutation_p.G214R|FTCD_uc002zih.2_Missense_Mutation_p.G214R|FTCD_uc010gqf.2_Missense_Mutation_p.G214R|FTCD_uc010gqg.1_Missense_Mutation_p.G83R	NM_006657	NP_006648	O95954	FTCD_HUMAN	formiminotransferase cyclodeaminase	214	Formiminotransferase C-subdomain (By similarity).				folic acid-containing compound metabolic process|histidine catabolic process	centriole|cytosol|Golgi apparatus	folic acid binding|formimidoyltetrahydrofolate cyclodeaminase activity|glutamate formimidoyltransferase activity			pancreas(1)|skin(1)	2	Breast(49;0.214)			Colorectal(79;0.235)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	TTCAGACGTCCTGGCTGCAAA	0.582													22	87					0	0	0.00188189	0	0
MCM3AP	8888	broad.mit.edu	37	21	47678887	47678887	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:47678887G>A	uc002zir.1	-	16	3736	c.3700C>T	c.(3700-3702)CAG>TAG	p.Q1234*	MCM3AP_uc002zip.1_5'UTR|MCM3AP_uc002ziq.1_Nonsense_Mutation_p.Q161*	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1234					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					TGAAGCTCCTGGAGGGTCTCC	0.507													15	93					0	0	0.00074312	0	0
PCNT	5116	broad.mit.edu	37	21	47847571	47847571	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr21:47847571C>T	uc002zji.3	+	34	7463	c.7356C>T	c.(7354-7356)GAC>GAT	p.D2452D	PCNT_uc002zjj.2_Silent_p.D2334D	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	2452					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GGAGAGGGGACCTTCTGCAGG	0.542													15	87					0	0	0.000566183	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073359	17073359	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:17073359C>T	uc002zlp.1	-	1	342	c.82G>A	c.(82-84)GAG>AAG	p.E28K		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	28					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GGCTCCTCCTCTTCTGGACTC	0.657													25	65					0	0	0.000878237	0	0
SEPT5	5413	broad.mit.edu	37	22	19707891	19707891	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:19707891C>T	uc002zpv.1	+	6	536	c.411C>T	c.(409-411)TTC>TTT	p.F137F	SEPT5_uc002zpw.1_RNA|SEPT5_uc002zpx.1_RNA|SEPT5_uc002zpy.1_5'Flank	NM_002688	NP_002679	Q99719	SEPT5_HUMAN	septin 5	137					cell cycle|cytokinesis|regulation of exocytosis|synaptic vesicle targeting	plasma membrane|septin complex|synaptic vesicle	GTP binding|GTPase activity|protein binding|structural molecule activity			lung(1)	1	Colorectal(54;0.0993)					AGCAGTACTTCCGTGATGAGA	0.597													21	46					0	0	0.00121646	0	0
MED15	51586	broad.mit.edu	37	22	20929493	20929493	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:20929493C>T	uc002zsp.2	+	9	1326	c.1246C>T	c.(1246-1248)CCT>TCT	p.P416S	MED15_uc002zsq.2_Intron|MED15_uc010gso.2_Intron|MED15_uc002zsr.2_Intron|MED15_uc011ahs.1_Intron|MED15_uc002zss.2_Intron|MED15_uc011ahu.1_Missense_Mutation_p.P142S|MED15_uc002zst.2_Missense_Mutation_p.P32S	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	416	Pro-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			AAGCTCCATCCCTTTGGGCAG	0.627													22	44					0	0	0.00229938	0	0
VPREB1	7441	broad.mit.edu	37	22	22599458	22599458	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:22599458C>T	uc002zvx.1	+	2	173	c.147C>T	c.(145-147)ATC>ATT	p.I49I	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	49	Ig-like V-type.|Complementarity-determining-1.				immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		ACCATGACATCGGTGTGTACA	0.617													42	94					0	0	0.000781405	0	0
ZNF280A	129025	broad.mit.edu	37	22	22868538	22868538	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:22868538C>T	uc002zwe.2	-	2	1670	c.1417G>A	c.(1417-1419)GAC>AAC	p.D473N	LOC96610_uc011aim.1_RNA	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	473	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		GTTTGATGGTCCTTGGTTTTG	0.453													46	121					0	0	0.000781405	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869722	22869722	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:22869722T>G	uc002zwe.2	-	2	486	c.233A>C	c.(232-234)CAC>CCC	p.H78P	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	78					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		TTGACGGAAGTGGCCTTTCTT	0.468													35	117					0	0	0.00148497	0	0
LOC96610	96610	broad.mit.edu	37	22	23077304	23077304	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:23077304C>T	uc011aim.1	+	187		c.9995C>T								Parts of antibodies, mostly variable regions.												0						CTCAGCCTCCCTCCGTGTCCG	0.567													60	135					0	0	0.000781405	0	0
SUSD2	56241	broad.mit.edu	37	22	24584023	24584023	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:24584023G>A	uc002zzn.1	+	13	2305	c.2261G>A	c.(2260-2262)GGC>GAC	p.G754D		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	754	Sushi.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						TGTGACAACGGCTACAGCCTG	0.637													46	107					0	0	0.000781405	0	0
CYTSA	23384	broad.mit.edu	37	22	24717903	24717903	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:24717903C>T	uc002zzw.2	+	5	1262	c.955C>T	c.(955-957)CCT>TCT	p.P319S	CYTSA_uc002zzv.3_Missense_Mutation_p.P319S|CYTSA_uc011ajq.1_Missense_Mutation_p.P319S	NM_015330	NP_056145	Q69YQ0	CYTSA_HUMAN	cytospin A	319					cell cycle|cell division						0						AGGCTCTGCCCCTGGCTCAGT	0.488													23	74					0	0	0.000720815	0	0
CRYBB2	1415	broad.mit.edu	37	22	25620999	25621000	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:25620999_25621000GG>AA	uc003abp.1	+	3	217_218	c.169_170GG>AA	c.(169-171)GGA>AAA	p.G57K		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	57	Beta/gamma crystallin 'Greek key' 2.				response to stimulus|visual perception		structural constituent of eye lens				0						AGTGCAGGCTGGACCGTAAGTA	0.564													21	61					0	0	6.4e-05	0	0
CRYBB2	1415	broad.mit.edu	37	22	25627647	25627647	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:25627647G>A	uc003abp.1	+	6	574	c.526G>A	c.(526-528)GAC>AAC	p.D176N		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	176	Beta/gamma crystallin 'Greek key' 4.				response to stimulus|visual perception		structural constituent of eye lens				0						GGACAGCAGCGACTTTGGGGC	0.627													27	83					0	0	0.00106085	0	0
MYO18B	84700	broad.mit.edu	37	22	26422879	26422879	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:26422879C>T	uc003abz.1	+	43	7189	c.6939C>T	c.(6937-6939)ATC>ATT	p.I2313I	MYO18B_uc003aca.1_Silent_p.I2194I|MYO18B_uc010guy.1_Silent_p.I2195I|MYO18B_uc010guz.1_Silent_p.I2193I|MYO18B_uc011aka.1_Silent_p.I1467I|MYO18B_uc011akb.1_Silent_p.I1826I|MYO18B_uc010gva.1_Silent_p.I296I|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2313						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCCTGGAAATCGAAGGGGCCG	0.592													8	16					0	0	0.000274275	0	0
SEZ6L	23544	broad.mit.edu	37	22	26694974	26694974	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:26694974C>T	uc003acb.2	+	5	1343	c.1187C>T	c.(1186-1188)CCC>CTC	p.P396L	SEZ6L_uc003acc.2_Missense_Mutation_p.P396L|SEZ6L_uc011akc.1_Missense_Mutation_p.P396L|SEZ6L_uc003acd.2_Missense_Mutation_p.P396L|SEZ6L_uc011akd.1_Missense_Mutation_p.P396L|SEZ6L_uc003ace.2_Missense_Mutation_p.P396L|SEZ6L_uc003acf.1_Missense_Mutation_p.P169L|SEZ6L_uc010gvc.1_Missense_Mutation_p.P169L	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	396	Sushi 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TGCAACTTTCCCCGCCGGCCT	0.592													15	45					0	0	0.000958276	0	0
MN1	4330	broad.mit.edu	37	22	28192897	28192897	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:28192897C>T	uc003adj.2	-	1	4590	c.3635G>A	c.(3634-3636)AGC>AAC	p.S1212N		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	1212							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						GTCAATGGTGCTCATGGCGCT	0.662			T	ETV6	AML|meningioma								18	41					0	0	0.00074312	0	0
HSCB	150274	broad.mit.edu	37	22	29139919	29139919	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:29139919C>G	uc003aea.2	+	2	327	c.286C>G	c.(286-288)CAA>GAA	p.Q96E	CHEK2_uc003adt.1_5'Flank|CHEK2_uc003adu.1_5'Flank|CHEK2_uc003adv.1_5'Flank|CHEK2_uc003adw.1_5'Flank|CHEK2_uc003adx.1_5'Flank|CHEK2_uc003ady.1_5'Flank|CHEK2_uc003adz.1_5'Flank	NM_172002	NP_741999	Q8IWL3	HSC20_HUMAN	J-type co-chaperone HSC20 precursor	96	J.				iron-sulfur cluster assembly|protein folding	mitochondrion	chaperone binding|heat shock protein binding|metal ion binding			kidney(1)	1						CAGGTACCAGCAACTGCAGCG	0.453													48	135					0	0	0.000781405	0	0
C22orf31	25770	broad.mit.edu	37	22	29455002	29455002	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:29455002C>T	uc003aej.1	-	3	728	c.601G>A	c.(601-603)GAC>AAC	p.D201N		NM_015370	NP_056185	O95567	CV031_HUMAN	hypothetical protein LOC25770	201											0						GTTAGCGTGTCCTCCGACAAC	0.592													37	109					0	0	0.00128727	0	0
GAS2L1	10634	broad.mit.edu	37	22	29708407	29708407	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:29708407C>T	uc003afa.1	+	7	2166	c.1967C>T	c.(1966-1968)CCC>CTC	p.P656L	GAS2L1_uc010gvm.1_Missense_Mutation_p.P429L|GAS2L1_uc003afb.1_3'UTR|GAS2L1_uc003afc.1_Missense_Mutation_p.P656L|GAS2L1_uc003afd.1_3'UTR|GAS2L1_uc003afe.1_3'UTR	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	656					cell cycle arrest	cytoplasm|cytoskeleton					0						CCCCGCCGCCCCTCCGGACCC	0.672													16	26					0	0	0.000308642	0	0
RFPL1	5988	broad.mit.edu	37	22	29837868	29837868	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:29837868C>T	uc003afn.2	+	2	920	c.711C>T	c.(709-711)TTC>TTT	p.F237F	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	237	B30.2/SPRY.						zinc ion binding				0						CTTTCCTCTTCGTAGACCGCA	0.512													21	75					0	0	0.00209593	0	0
NF2	4771	broad.mit.edu	37	22	30090780	30090780	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:30090780G>T	uc003age.3	+	16	2220	c.1777G>T	c.(1777-1779)GAA>TAA	p.E593*	NF2_uc003agf.3_3'UTR|NF2_uc003agb.3_3'UTR|NF2_uc003agc.3_3'UTR|NF2_uc003agd.3_RNA|NF2_uc003agg.3_3'UTR|NF2_uc003aga.3_3'UTR|NF2_uc003agh.3_3'UTR|NF2_uc003agi.3_3'UTR|NF2_uc003agj.3_Nonsense_Mutation_p.E163*|NF2_uc003agk.3_3'UTR|NF2_uc011akq.1_Missense_Mutation_p.L247F	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	593					actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding			meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						GGCCTTCTTTGAAGAGCTCTA	0.582			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				9	25					0.00136819	0.00480085	0.00136819	1	0
SELM	140606	broad.mit.edu	37	22	31503396	31503396	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:31503396G>A	uc011ali.1	-	1	156	c.96C>T	c.(94-96)AAC>AAT	p.N32N	SELM_uc011alj.1_RNA|INPP5J_uc010gwf.2_5'Flank	NM_080430	NP_536355	Q8WWX9	SELM_HUMAN	selenoprotein M precursor	32						endoplasmic reticulum|Golgi apparatus|nucleus|perinuclear region of cytoplasm					0						CGCTCAGACGGTTCCAGTCCG	0.706													6	11					0	0	0.000274275	0	0
SFI1	9814	broad.mit.edu	37	22	31998226	31998226	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:31998226C>T	uc003ale.2	+	16	1966	c.1573C>T	c.(1573-1575)CTC>TTC	p.L525F	SFI1_uc003ald.1_Missense_Mutation_p.L501F|SFI1_uc003alf.2_Missense_Mutation_p.L494F|SFI1_uc003alg.2_Missense_Mutation_p.L443F|SFI1_uc011alp.1_Missense_Mutation_p.L443F|SFI1_uc011alq.1_Missense_Mutation_p.L470F|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	525					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						AGTATTTTCTCTCTGGAGGCA	0.418													62	234					0	0	0.000781405	0	0
C22orf30	253143	broad.mit.edu	37	22	32108135	32108135	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:32108135G>A	uc003alp.3	-	4	5883	c.5690C>T	c.(5689-5691)TCC>TTC	p.S1897F	C22orf30_uc003alo.1_Missense_Mutation_p.S1696F|C22orf30_uc010gwj.1_Missense_Mutation_p.S1696F	NM_173566	NP_775837	Q5THK1	PR14L_HUMAN	hypothetical protein LOC253143	1897											0						GATTTCGAAGGAGCAGACAGA	0.527													24	87					0	0	0.00047179	0	0
C22orf24	25775	broad.mit.edu	37	22	32330163	32330163	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:32330163C>T	uc003aly.2	-	3	591	c.424G>A	c.(424-426)GAG>AAG	p.E142K	C22orf24_uc003alx.2_RNA	NM_015372	NP_056187	Q9Y442	CV024_HUMAN	hypothetical protein LOC25775	142						integral to membrane				central_nervous_system(1)	1						AAGCTTTCCTCTGATCTTCCT	0.423													4	16					0	0	0.00024832	0	0
SLC5A1	6523	broad.mit.edu	37	22	32445953	32445953	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:32445953G>A	uc003amc.2	+	2	391	c.159G>A	c.(157-159)GGG>GGA	p.G53G		NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	53	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						CCAATCGTGGGACTGTTGGAG	0.468													96	226					0	0	0.000781405	0	0
C22orf42	150297	broad.mit.edu	37	22	32548057	32548057	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:32548057G>A	uc003amd.2	-	4	438	c.397C>T	c.(397-399)CAC>TAC	p.H133Y		NM_001010859	NP_001010859	Q6IC83	CV042_HUMAN	chromosome 22 open reading frame 42	133										ovary(1)|skin(1)	2						TACGTACGGTGGTCGTGCTTG	0.244													16	65					0	0	0.000422831	0	0
MB	4151	broad.mit.edu	37	22	36007086	36007086	+	Missense_Mutation	SNP	C	T	T	rs145465287		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:36007086C>T	uc003anz.2	-	2	243	c.163G>A	c.(163-165)GAG>AAG	p.E55K	MB_uc003aoa.2_Missense_Mutation_p.E55K|MB_uc003aob.2_Missense_Mutation_p.E55K	NM_005368	NP_005359	P02144	MYG_HUMAN	myoglobin	55			E -> K.				heme binding|oxygen transporter activity				0						GCCTTCATCTCGTCCTCTGAC	0.542													33	85					0	0	0.0025221	0	0
APOL5	80831	broad.mit.edu	37	22	36122288	36122288	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:36122288A>T	uc003aof.2	+	3	173	c.173A>T	c.(172-174)AAA>ATA	p.K58I		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	58					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						CAGAGTTGGAAAATTAACAAT	0.458													30	85					0	0	0.0024448	0	0
CACNG2	10369	broad.mit.edu	37	22	36962500	36962500	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:36962500C>T	uc003aps.1	-	3	618	c.336G>A	c.(334-336)GTG>GTA	p.V112V		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	112	Helical; (Potential).				membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						AAAGCAGAATCACACTCAGGA	0.552													23	57					0	0	0.00229938	0	0
CSF2RB	1439	broad.mit.edu	37	22	37322095	37322095	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:37322095C>T	uc003aqa.3	+	4	484	c.267C>T	c.(265-267)CCC>CCT	p.P89P	CSF2RB_uc003aqc.3_Silent_p.P89P	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	89	Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	GCCCCCATCCCCGCTGCGTGC	0.607													19	43					0	0	0.00152264	0	0
CSF2RB	1439	broad.mit.edu	37	22	37334311	37334311	+	Missense_Mutation	SNP	G	A	A	rs146598061		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:37334311G>A	uc003aqa.3	+	14	2678	c.2461G>A	c.(2461-2463)GAC>AAC	p.D821N	CSF2RB_uc003aqc.3_Missense_Mutation_p.D827N	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	821	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	GCAAGTGGGCGACTATTGCTT	0.647													48	121					0	0	0.000781405	0	0
ELFN2	114794	broad.mit.edu	37	22	37770222	37770222	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:37770222G>A	uc003asq.3	-	3	2139	c.1353C>T	c.(1351-1353)TCC>TCT	p.S451S		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	451	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					CGTGCACAATGGAGCCGGCAT	0.642													57	162					0	0	0.000781405	0	0
EIF3L	51386	broad.mit.edu	37	22	38266249	38266249	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:38266249C>T	uc003auf.2	+	8	733	c.646C>T	c.(646-648)CGT>TGT	p.R216C	EIF3L_uc003aue.1_Missense_Mutation_p.R216C|EIF3L_uc011ann.1_Missense_Mutation_p.R168C|EIF3L_uc003aug.2_Missense_Mutation_p.R108C|EIF3L_uc003auh.2_5'UTR	NM_016091	NP_057175	Q9Y262	EIF3L_HUMAN	eukaryotic translation initiation factor 3	216						eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1						TGACTTTCTTCGTTCCAATCC	0.433													25	59					0	0	0.000878237	0	0
PLA2G6	8398	broad.mit.edu	37	22	38536077	38536078	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:38536077_38536078GG>AA	uc003auy.1	-	5	844_845	c.708_709CC>TT	c.(706-711)GTCCGC>GTTTGC	p.R237C	PLA2G6_uc003auz.1_Missense_Mutation_p.R237C|PLA2G6_uc003ava.1_Missense_Mutation_p.R237C|PLA2G6_uc003avb.2_Missense_Mutation_p.R237C|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Intron	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	237	ANK 3.				cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	AGCAGCACGCGGACCATCTCCT	0.609													11	41					0	0	6.4e-05	0	0
NPTXR	23467	broad.mit.edu	37	22	39222561	39222561	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:39222561C>T	uc003awk.2	-	3	1196	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	348	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					AGTACAATCTCGTTGGCCTGC	0.672													33	90					0	0	0.00058488	0	0
APOBEC3D	140564	broad.mit.edu	37	22	39421260	39421260	+	Silent	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:39421260C>G	uc011aoe.1	+	3	450	c.396C>G	c.(394-396)GCC>GCG	p.A132A	APOBEC3D_uc011aod.1_Silent_p.A132A|APOBEC3D_uc011aof.1_Intron|APOBEC3D_uc003awu.3_Intron|APOBEC3D_uc003awt.3_Silent_p.A132A|APOBEC3D_uc010gxu.2_Intron	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	132					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					CCATCTCTGCCGCCCGCCTCT	0.562													25	70					0	0	0.000586117	0	0
GRAP2	9402	broad.mit.edu	37	22	40351845	40351845	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:40351845G>A	uc003ayh.1	+	3	364	c.101G>A	c.(100-102)TGG>TAG	p.W34*	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Intron|GRAP2_uc011aon.1_Intron|GRAP2_uc010gya.1_Nonsense_Mutation_p.W34*|GRAP2_uc011aoo.1_Intron|GRAP2_uc011aop.1_Nonsense_Mutation_p.W34*|GRAP2_uc011aoq.1_Intron|GRAP2_uc003ayj.1_Nonsense_Mutation_p.W34*	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	34	SH3 1.				cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						CAAGAGGAGTGGTTTAAGGCG	0.463													9	35					0	0	0.00185496	0	0
TNRC6B	23112	broad.mit.edu	37	22	40717151	40717151	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:40717151C>T	uc011aor.1	+	22	5243	c.5032C>T	c.(5032-5034)CAT>TAT	p.H1678Y	TNRC6B_uc003aym.2_Missense_Mutation_p.H874Y|TNRC6B_uc003ayn.3_Missense_Mutation_p.H1568Y|TNRC6B_uc003ayo.2_Missense_Mutation_p.H1425Y	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1678	RRM.				gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						GCTGACATTCCATCTGAATCT	0.517													14	43					0	0	0.00185496	0	0
ADSL	158	broad.mit.edu	37	22	40742611	40742611	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:40742611C>T	uc003ayp.3	+	1	108	c.49C>T	c.(49-51)CTT>TTT	p.L17F	ADSL_uc003ays.3_Missense_Mutation_p.L17F|ADSL_uc003ayq.3_Missense_Mutation_p.L17F|ADSL_uc003ayr.3_5'UTR|ADSL_uc003ayt.3_Missense_Mutation_p.L17F	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	17					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						CCGCTCACCTCTTGCCTCCCG	0.647													4	17					0	0	0.000602214	0	0
ACO2	50	broad.mit.edu	37	22	41924005	41924005	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:41924005G>A	uc003bac.2	+	17	2209	c.2187G>A	c.(2185-2187)CTG>CTA	p.L729L	ACO2_uc003bad.2_Silent_p.L754L|POLR3H_uc003bae.2_RNA|POLR3H_uc003baf.2_3'UTR|POLR3H_uc003bag.2_3'UTR|POLR3H_uc003bai.2_3'UTR	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	729					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						TTCAGGGCCTGAAGGACTTCA	0.617													45	168					0	0	0.000781405	0	0
TCF20	6942	broad.mit.edu	37	22	42608868	42608868	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:42608868G>A	uc003bcj.1	-	1	2578	c.2444C>T	c.(2443-2445)CCC>CTC	p.P815L	TCF20_uc003bck.1_Missense_Mutation_p.P815L|TCF20_uc003bnt.2_Missense_Mutation_p.P815L	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	815					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						GCCCCAGTGGGGATTTTCTAA	0.443													24	49					0	0	0.00047179	0	0
A4GALT	53947	broad.mit.edu	37	22	43089692	43089692	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:43089692T>C	uc003bdb.2	-	3	527	c.266A>G	c.(265-267)AAC>AGC	p.N89S	A4GALT_uc010gzd.2_Missense_Mutation_p.N89S	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	89	Lumenal (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						GAAGTTGGGGTTGGTCCGGTC	0.637													26	109					0	0	0.00106085	0	0
NCRNA00207	388910	broad.mit.edu	37	22	44966433	44966433	+	Silent	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:44966433A>C	uc003bev.1	+	2	157	c.90A>C	c.(88-90)TCA>TCC	p.S30S	NCRNA00207_uc011aqg.1_RNA|NCRNA00207_uc011aqh.1_RNA	NM_001012986	NP_001013004			SubName: Full=Novel gene;												0						GGATCCAATCACTGAACCAGA	0.473													14	34					0	0	0.000566183	0	0
FAM118A	55007	broad.mit.edu	37	22	45728384	45728384	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:45728384C>T	uc003bfz.3	+	7	1346	c.730C>T	c.(730-732)CAG>TAG	p.Q244*	FAM118A_uc003bga.3_Nonsense_Mutation_p.Q244*|FAM118A_uc011aqr.1_Nonsense_Mutation_p.Q62*	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	244						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TCAGATATTCCAGGCCCTCTT	0.468													59	159					0	0	0.000781405	0	0
PKDREJ	10343	broad.mit.edu	37	22	46652877	46652877	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:46652877C>T	uc003bhh.2	-	1	6343	c.6343G>A	c.(6343-6345)GAA>AAA	p.E2115K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	2115	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TAGTTCCATTCATGCTGACCA	0.443													14	45					0	0	0.00185496	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658098	46658098	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:46658098C>T	uc003bhh.2	-	1	1122	c.1122G>A	c.(1120-1122)CAG>CAA	p.Q374Q		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	374	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		ACCAAAAGAACTGGAGTCCCT	0.532													33	126					0	0	0.000692331	0	0
MLC1	23209	broad.mit.edu	37	22	50512717	50512717	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:50512717G>A	uc003bjg.1	-	8	915	c.642C>T	c.(640-642)ATC>ATT	p.I214I	MLC1_uc011arl.1_Silent_p.I162I|MLC1_uc003bjh.1_Silent_p.I214I|MLC1_uc011arm.1_Silent_p.I184I|MLC1_uc011arn.1_Silent_p.I135I|MLC1_uc011aro.1_Silent_p.I180I	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	214	Helical; (Potential).					basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		TCAGGGCAATGATCCCCCCGA	0.602													13	32					0	0	0.00244969	0	0
TRABD	80305	broad.mit.edu	37	22	50632027	50632027	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:50632027C>T	uc003bjq.1	+	3	142	c.56C>T	c.(55-57)CCG>CTG	p.P19L	TRABD_uc003bjr.1_5'UTR|TRABD_uc003bjs.1_Missense_Mutation_p.P19L|TRABD_uc003bjt.1_Missense_Mutation_p.P19L|TRABD_uc003bju.1_Missense_Mutation_p.P19L|TRABD_uc003bjv.2_Missense_Mutation_p.P19L|TRABD_uc003bjw.1_Missense_Mutation_p.P19L	NM_025204	NP_079480	Q9H4I3	TRABD_HUMAN	TraB domain containing	19											0		all_cancers(38;1.07e-07)|all_epithelial(38;9.6e-07)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		LUAD - Lung adenocarcinoma(64;0.105)		CCTGTTGTGCCGTCAGAGGCT	0.622													27	74					0	0	0.00283554	0	0
SBF1	6305	broad.mit.edu	37	22	50903087	50903087	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr22:50903087G>A	uc003blh.2	-	14	1707	c.1512C>T	c.(1510-1512)CCC>CCT	p.P504P	SBF1_uc011arx.1_Silent_p.P168P|SBF1_uc003bli.2_Silent_p.P505P	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	504					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GCCGGGGGAAGGGTCGGGGCA	0.677													30	105					0	0	0.0024448	0	0
CHL1	10752	broad.mit.edu	37	3	436434	436434	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:436434G>A	uc003bou.2	+	23	3196	c.2925G>A	c.(2923-2925)AAG>AAA	p.K975K	CHL1_uc003bot.2_Silent_p.K991K|CHL1_uc003bow.1_Silent_p.K975K|CHL1_uc011asi.1_Silent_p.K991K	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	975	Fibronectin type-III 4.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CTCCATCAAAGCCCAGCTGGC	0.393													14	49					0	0	0.00244969	0	0
CNTN4	152330	broad.mit.edu	37	3	2787248	2787248	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:2787248C>T	uc003bpc.2	+	5	446	c.225C>T	c.(223-225)TTC>TTT	p.F75F	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Silent_p.F75F	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	75	Ig-like C2-type 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GTATGGATTTCCGCTACAGTG	0.383													27	116					0	0	0.00209593	0	0
CNTN4	152330	broad.mit.edu	37	3	3030121	3030121	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:3030121G>A	uc003bpc.2	+	13	1672	c.1451G>A	c.(1450-1452)GGA>GAA	p.G484E	CNTN4_uc003bpb.1_Missense_Mutation_p.G156E|CNTN4_uc003bpd.1_Missense_Mutation_p.G484E|CNTN4_uc003bpe.2_Missense_Mutation_p.G156E|CNTN4_uc003bpf.2_Missense_Mutation_p.G156E	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	484	Ig-like C2-type 5.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AACCATTTTGGAACTGCTAGC	0.368													17	58					0	0	0.000566183	0	0
LRRN1	57633	broad.mit.edu	37	3	3887687	3887687	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:3887687A>T	uc003bpt.3	+	2	2123	c.1362A>T	c.(1360-1362)GAA>GAT	p.E454D	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	454	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CTGAGCCAGAACCTGAAATTT	0.443													24	46					0	0	0.00278032	0	0
EDEM1	9695	broad.mit.edu	37	3	5244719	5244719	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:5244719C>T	uc003bqi.2	+	5	1059	c.927C>T	c.(925-927)CTC>CTT	p.L309L	EDEM1_uc011asz.1_Silent_p.L87L|EDEM1_uc003bqh.2_Silent_p.L309L	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	309	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		CCGGTTCCCTCCTGGTGGAAT	0.537													31	75					0	0	0.00283554	0	0
SLC6A11	6538	broad.mit.edu	37	3	10861198	10861198	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:10861198C>T	uc003bvz.2	+	2	339	c.305C>T	c.(304-306)CCT>CTT	p.P102L	SLC6A11_uc003bvy.1_Missense_Mutation_p.P102L	NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	102	Helical; Name=2; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		TGTGGAATTCCTGTTTTTTTC	0.433													17	129					0	0	0.00121646	0	0
SLC6A1	6529	broad.mit.edu	37	3	11060385	11060385	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:11060385G>A	uc010hdq.2	+	5	882	c.471_splice	c.e5+1	p.T157_splice		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter						neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CTTCACCACGGTGAGTGGTCC	0.577													15	35					0	0	0.000422831	0	0
SLC6A1	6529	broad.mit.edu	37	3	11076276	11076276	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:11076276C>T	uc010hdq.2	+	15	1998	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	529					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	ACTATGTTTTCCCCAAGTGGG	0.493													18	55					0	0	0.00152264	0	0
HRH1	3269	broad.mit.edu	37	3	11301279	11301279	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:11301279G>A	uc010hdr.2	+	2	898	c.556G>A	c.(556-558)GAT>AAT	p.D186N	HRH1_uc010hds.2_Missense_Mutation_p.D186N|HRH1_uc010hdt.2_Missense_Mutation_p.D186N|HRH1_uc003bwb.3_Missense_Mutation_p.D186N	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	186	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	AGACTTCTATGATGTCACCTG	0.498													53	114					0	0	0.000781405	0	0
SYN2	6854	broad.mit.edu	37	3	12232083	12232084	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:12232083_12232084CC>TT	uc003bwm.2	+	17	1871_1872	c.1707_1708CC>TT	c.(1705-1710)ATCCGG>ATTTGG	p.R570W	SYN2_uc003bwn.2_Missense_Mutation_p.R244W	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	570					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						CAGAGACCATCCGGAGCTTGAG	0.525													52	237					0	0	6.4e-05	0	0
TMEM40	55287	broad.mit.edu	37	3	12790229	12790229	+	Missense_Mutation	SNP	C	T	T	rs146477309	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:12790229C>T	uc003bxg.1	-	3	263	c.136G>A	c.(136-138)GAG>AAG	p.E46K	TMEM40_uc003bxh.1_Missense_Mutation_p.E46K|TMEM40_uc003bxi.1_Intron|TMEM40_uc011auv.1_Missense_Mutation_p.E62K	NM_018306	NP_060776	Q8WWA1	TMM40_HUMAN	transmembrane protein 40	46						integral to membrane					0						TTGTTTCTCTCATATTGTTCT	0.308													83	250					0	0	0.000781405	0	0
NUP210	23225	broad.mit.edu	37	3	13376957	13376957	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:13376957G>A	uc003bxv.1	-	28	3923	c.3840C>T	c.(3838-3840)GTC>GTT	p.V1280V		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1280	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CTCCTACCTGGACTTGGATCT	0.622													26	80					0	0	0.00283554	0	0
NUP210	23225	broad.mit.edu	37	3	13420428	13420428	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:13420428G>A	uc003bxv.1	-	8	1112	c.1029C>T	c.(1027-1029)GTC>GTT	p.V343V	NUP210_uc003bxx.2_Silent_p.V15V	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	343	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					ATCCAGGTTCGACCACGTAGA	0.448													55	143					0	0	0.000781405	0	0
SLC6A6	6533	broad.mit.edu	37	3	14508159	14508159	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:14508159G>A	uc010heg.2	+	14	1158	c.867_splice	c.e14+1	p.Q289_splice	SLC6A6_uc003byq.2_Splice_Site_p.Q289_splice|SLC6A6_uc003byr.2_Splice_Site	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter						cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						GGACCCACAGGTACTGTGGGG	0.652													28	90					0	0	0.000814825	0	0
FGD5	152273	broad.mit.edu	37	3	14861600	14861600	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:14861600C>T	uc003bzc.2	+	1	1132	c.1022C>T	c.(1021-1023)TCC>TTC	p.S341F	FGD5_uc011avk.1_Missense_Mutation_p.S341F	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	341					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						TTCGTGACTTCCCTCACAGGA	0.532													28	97					0	0	0.001512	0	0
ANKRD28	23243	broad.mit.edu	37	3	15717478	15717478	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:15717478G>A	uc003caj.1	-	27	2945	c.2802C>T	c.(2800-2802)GCC>GCT	p.A934A	ANKRD28_uc003cai.1_Silent_p.A780A|ANKRD28_uc011avz.1_Silent_p.A780A|ANKRD28_uc003cak.1_RNA|ANKRD28_uc011avy.1_Silent_p.A14A	NM_015199	NP_056014	O15084	ANR28_HUMAN	ankyrin repeat domain 28	934	ANK 27.					nucleoplasm	protein binding			breast(1)	1						GCCCATTTCGGGCAGCAACAT	0.338													21	51					0	0	0.00047179	0	0
EFHB	151651	broad.mit.edu	37	3	19975029	19975029	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:19975029G>A	uc003cbl.3	-	1	678	c.482C>T	c.(481-483)CCT>CTT	p.P161L	EFHB_uc003cbm.2_Intron	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	161					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						AACGAAAGCAGGCTTTCCCAC	0.498													29	100					0	0	0.00283554	0	0
OXSM	54995	broad.mit.edu	37	3	25832607	25832607	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:25832607C>T	uc003cdn.2	+	2	203	c.96C>T	c.(94-96)TTC>TTT	p.F32F	NGLY1_uc011awo.1_5'Flank|OXSM_uc011awp.1_5'UTR|OXSM_uc010hfh.2_Silent_p.F32F	NM_017897	NP_060367	Q9NWU1	OXSM_HUMAN	3-oxoacyl-ACP synthase, mitochondrial isoform 1	32					acyl-CoA metabolic process|medium-chain fatty acid biosynthetic process|short-chain fatty acid biosynthetic process	mitochondrion	3-oxoacyl-[acyl-carrier-protein] synthase activity			ovary(1)|breast(1)	2						GGAAGTTTTTCGGAACTGTGC	0.418													46	104					0	0	0.000781405	0	0
NEK10	152110	broad.mit.edu	37	3	27203969	27203969	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:27203969C>T	uc010hfk.2	-	10	1158	c.929G>A	c.(928-930)CGA>CAA	p.R310Q	NEK10_uc003cds.1_Missense_Mutation_p.R395Q|NEK10_uc010hfj.2_Intron			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	998							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						TTTGAGATTTCGAAGAATCAC	0.458													23	68					0	0	0.00278032	0	0
NEK10	152110	broad.mit.edu	37	3	27332781	27332781	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:27332781C>T	uc003cdt.1	-	19	1851	c.1577G>A	c.(1576-1578)GGA>GAA	p.G526E	NEK10_uc003cds.1_5'UTR	NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	526	ATP (By similarity).|Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						AGCTCCACTTCCAAGATGATC	0.403													22	64					0	0	0.00047179	0	0
ZCWPW2	152098	broad.mit.edu	37	3	28454855	28454855	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:28454855G>A	uc003ceh.2	+	3	464	c.296G>A	c.(295-297)GGA>GAA	p.G99E	ZCWPW2_uc003cei.2_Missense_Mutation_p.G99E	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	99	PWWP.						zinc ion binding			ovary(2)	2						CTCCCTCTTGGAAGCCTGGTT	0.318													22	67					0	0	0.000586117	0	0
GADL1	339896	broad.mit.edu	37	3	30769839	30769839	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:30769839C>T	uc003cep.2	-	15	1508	c.1461G>A	c.(1459-1461)CGG>CGA	p.R487R		NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	487					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	TGACCTTTCCCCGGTGCGGCT	0.557													17	40					0	0	0.00121646	0	0
GADL1	339896	broad.mit.edu	37	3	30819706	30819706	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:30819706C>T	uc003cep.2	-	14	1404	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K		NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	453					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	GGTCCTTCTTCCATCTCTCTG	0.328													39	111					0	0	0.00285205	0	0
TRIM71	131405	broad.mit.edu	37	3	32932358	32932358	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:32932358C>T	uc003cff.2	+	4	1725	c.1662C>T	c.(1660-1662)CCC>CCT	p.P554P		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	554	Filamin.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						GTTACCGACCCCAGCTGGAGG	0.577													19	44					0	0	0.00121646	0	0
ARPP21	10777	broad.mit.edu	37	3	35730874	35730874	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:35730874C>T	uc003cgb.2	+	7	746	c.482C>T	c.(481-483)TCC>TTC	p.S161F	ARPP21_uc003cga.2_Missense_Mutation_p.S161F|ARPP21_uc011axy.1_Missense_Mutation_p.S161F|ARPP21_uc003cgf.2_5'Flank	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	161						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AAGAATAATTCCAGGTAAATT	0.328													3	7					0	0	6.4e-05	0	0
ARPP21	10777	broad.mit.edu	37	3	35780915	35780915	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:35780915C>T	uc003cgb.2	+	17	2015	c.1751C>T	c.(1750-1752)CCA>CTA	p.P584L	ARPP21_uc003cga.2_Missense_Mutation_p.P565L|ARPP21_uc011axy.1_Missense_Mutation_p.P585L|ARPP21_uc003cgf.2_Missense_Mutation_p.P420L|ARPP21_uc003cgg.2_Missense_Mutation_p.P107L	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	584	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TCCCTTATGCCACAGCCGGCC	0.612													13	43					0	0	0.00136819	0	0
ARPP21	10777	broad.mit.edu	37	3	35781015	35781015	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:35781015C>T	uc003cgb.2	+	17	2115	c.1851C>T	c.(1849-1851)GTC>GTT	p.V617V	ARPP21_uc003cga.2_Silent_p.V598V|ARPP21_uc011axy.1_Silent_p.V618V|ARPP21_uc003cgf.2_Silent_p.V453V|ARPP21_uc003cgg.2_Silent_p.V140V	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	617	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CCCAGCAGGTCCTCCAGCCCC	0.602													10	41					0	0	0.000978159	0	0
PLCD1	5333	broad.mit.edu	37	3	38061693	38061693	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38061693G>A	uc003chn.2	-	2	309	c.185C>T	c.(184-186)CCG>CTG	p.P62L	PLCD1_uc003chm.2_Missense_Mutation_p.P83L	NM_006225	NP_006216	P51178	PLCD1_HUMAN	phospholipase C, delta 1 isoform 2	62	PH.				intracellular signal transduction|lipid catabolic process|phospholipid metabolic process	cytoplasm	calcium ion binding|GTPase activating protein binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		CTGGGACTCCGGGGTCCGCAT	0.567													33	66					0	0	0.00170553	0	0
SLC22A14	9389	broad.mit.edu	37	3	38357167	38357167	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38357167C>T	uc010hhc.1	+	9	1539	c.1497C>T	c.(1495-1497)TTC>TTT	p.F499F	SLC22A14_uc003cib.2_Silent_p.F499F|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	499	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		CTGTGTTCTTCCTCTACACCG	0.577													42	133					0	0	0.000781405	0	0
SCN5A	6331	broad.mit.edu	37	3	38622542	38622542	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38622542C>T	uc003cio.2	-	17	3302	c.3108G>A	c.(3106-3108)CAG>CAA	p.Q1036Q	SCN5A_uc003cin.2_Silent_p.Q1036Q|SCN5A_uc003cil.3_Silent_p.Q1036Q|SCN5A_uc010hhi.2_Silent_p.Q1036Q|SCN5A_uc010hhk.2_Silent_p.Q1036Q|SCN5A_uc011ayr.1_Silent_p.Q1036Q|SCN5A_uc010hhj.1_Silent_p.Q647Q	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1036					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGGGGGTGCCCTGGCCTGGTT	0.642													18	43					0	0	0.000958276	0	0
SCN5A	6331	broad.mit.edu	37	3	38627476	38627476	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38627476G>A	uc003cio.2	-	16	2687	c.2493C>T	c.(2491-2493)ATC>ATT	p.I831I	SCN5A_uc003cin.2_Silent_p.I831I|SCN5A_uc003cil.3_Silent_p.I831I|SCN5A_uc010hhi.2_Silent_p.I831I|SCN5A_uc010hhk.2_Silent_p.I831I|SCN5A_uc011ayr.1_Silent_p.I831I|SCN5A_uc010hhj.1_Silent_p.I442I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	831					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AGTTCCCGATGATCTTGATGA	0.567													11	35					0	0	0.00244969	0	0
SCN5A	6331	broad.mit.edu	37	3	38655273	38655273	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38655273G>A	uc003cio.2	-	6	858	c.664C>T	c.(664-666)CGA>TGA	p.R222*	SCN5A_uc003cin.2_Nonsense_Mutation_p.R222*|SCN5A_uc003cil.3_Intron|SCN5A_uc010hhi.2_Intron|SCN5A_uc010hhk.2_Intron|SCN5A_uc011ayr.1_Intron|SCN5A_uc010hhl.1_Intron	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	222	Helical; Voltage-sensor; Name=S4 of repeat I; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGGAGGACTCGGAAGGTGCGT	0.483													4	19					0	0	0.00116845	0	0
SCN5A	6331	broad.mit.edu	37	3	38671899	38671899	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38671899C>T	uc003cio.2	-	3	489	c.295G>A	c.(295-297)GGC>AGC	p.G99S	SCN5A_uc003cin.2_Missense_Mutation_p.G99S|SCN5A_uc003cil.3_Missense_Mutation_p.G99S|SCN5A_uc010hhi.2_Missense_Mutation_p.G99S|SCN5A_uc010hhk.2_Missense_Mutation_p.G99S|SCN5A_uc011ayr.1_Missense_Mutation_p.G99S	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	99					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ATGGTCTTGCCTTTATTCAGT	0.522													39	122					0	0	0.000781405	0	0
SCN10A	6336	broad.mit.edu	37	3	38739124	38739124	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38739124G>A	uc003ciq.2	-	27	5587	c.5587C>T	c.(5587-5589)CGG>TGG	p.R1863W		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1863	IQ.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACATAGCTCCGATAGGCCTTT	0.488													20	59					0	0	0.00188189	0	0
SCN10A	6336	broad.mit.edu	37	3	38763776	38763776	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38763776G>A	uc003ciq.2	-	19	3480	c.3480C>T	c.(3478-3480)TTC>TTT	p.F1160F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1160	III.|Helical; Name=S1 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCAGGATCATGAAGATGATGA	0.537													13	76					0	0	0.00074312	0	0
SCN10A	6336	broad.mit.edu	37	3	38797282	38797282	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38797282C>T	uc003ciq.2	-	10	1458	c.1458G>A	c.(1456-1458)AGG>AGA	p.R486R		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	486					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ctcttaccatcctgcgctGGT	0.219													41	115					0	0	0.00285205	0	0
SCN11A	11280	broad.mit.edu	37	3	38888697	38888697	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38888697C>T	uc011ays.1	-	26	5063	c.4864G>A	c.(4864-4866)GAC>AAC	p.D1622N		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1622					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATGTCAAAGTCATCTTCACCC	0.388													27	92					0	0	0.0024448	0	0
SCN11A	11280	broad.mit.edu	37	3	38913713	38913713	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38913713G>A	uc011ays.1	-	20	3665	c.3466C>T	c.(3466-3468)CGT>TGT	p.R1156C		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1156	Helical; Voltage-sensor; Name=S4 of repeat III; (By similarity).|III.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GACAGCGCACGAAGAGGCCTC	0.463													30	110					0	0	0.00111076	0	0
SCN11A	11280	broad.mit.edu	37	3	38968362	38968362	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:38968362G>A	uc011ays.1	-	4	748	c.549C>T	c.(547-549)TTC>TTT	p.F183F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	183	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CATCCAGAATGAAACCTCTTG	0.343													29	97					0	0	0.00127121	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307245	39307245	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:39307245G>A	uc003cjl.2	-	2	848	c.756C>T	c.(754-756)TTC>TTT	p.F252F		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	252	Helical; Name=6; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		GCGTCTCCAGGAAAATCATAA	0.463													40	96					0	0	0.00148497	0	0
CCR8	1237	broad.mit.edu	37	3	39374497	39374497	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:39374497G>A	uc010hhr.2	+	2	813	c.675G>A	c.(673-675)CTG>CTA	p.L225L	CCR8_uc003cjm.2_Silent_p.L142L	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	225	Cytoplasmic (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		TGCACCAGCTGAAGAGGTGTC	0.418													9	49					0	0	0.00185496	0	0
LYZL4	131375	broad.mit.edu	37	3	42448635	42448635	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:42448635C>T	uc003cle.2	-	2	358	c.109G>A	c.(109-111)GAT>AAT	p.D37N		NM_144634	NP_653235	Q96KX0	LYZL4_HUMAN	lysozyme-like 4 precursor	37					cell wall macromolecule catabolic process	extracellular region	lysozyme activity			central_nervous_system(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.222)		TCAAAATAATCCAGGCCTCCA	0.552													13	63					0	0	0.00185496	0	0
C3orf39	84892	broad.mit.edu	37	3	43122090	43122090	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:43122090G>A	uc003cmq.1	-	2	975	c.834C>T	c.(832-834)AGC>AGT	p.S278S	C3orf39_uc003cmr.1_Silent_p.S278S	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	278						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		CTCCTGTGTGGCTCACGTTCA	0.567													35	115					0	0	0.00195071	0	0
ZNF35	7584	broad.mit.edu	37	3	44692677	44692677	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:44692677T>C	uc003cnq.2	+	2	339	c.118T>C	c.(118-120)TCC>CCC	p.S40P	ZNF35_uc003cnr.2_5'UTR	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	40	Globular domain.				cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		ACAAGTGCACTCCGAGAACAT	0.547													12	53					0	0	0.00185496	0	0
ZNF35	7584	broad.mit.edu	37	3	44692679	44692679	+	Silent	SNP	C	T	T	rs143301932	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:44692679C>T	uc003cnq.2	+	2	341	c.120C>T	c.(118-120)TCC>TCT	p.S40S	ZNF35_uc003cnr.2_5'UTR	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	40	Globular domain.				cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		AAGTGCACTCCGAGAACATCA	0.552													13	53					0	0	0.00244969	0	0
LARS2	23395	broad.mit.edu	37	3	45461192	45461192	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:45461192C>T	uc003cop.1	+	6	672	c.487C>T	c.(487-489)CGT>TGT	p.R163C	LARS2_uc010hit.1_Missense_Mutation_p.R120C	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	163					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	ACAGCTTGATCGTCTGGGCCT	0.418													19	65					0	0	0.00047179	0	0
FYCO1	79443	broad.mit.edu	37	3	46003793	46003793	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:46003793G>T	uc003cpb.3	-	11	3567	c.3361C>A	c.(3361-3363)CAG>AAG	p.Q1121K	FYCO1_uc011bal.1_Missense_Mutation_p.Q1121K	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	1121	Potential.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		AGCATCTTCTGGTCATTCCTC	0.498													12	470					0.00244969	0.00856862	0.00244969	1	0
CCR1	1230	broad.mit.edu	37	3	46244938	46244938	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:46244938G>A	uc003cph.1	-	2	938	c.867C>T	c.(865-867)ATC>ATT	p.I289I	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	289	Helical; Name=7; (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		GCGTGTAGGCGATCACCTCCG	0.522													7	17					0	0	0.000274275	0	0
CCR1	1230	broad.mit.edu	37	3	46245133	46245133	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:46245133C>T	uc003cph.1	-	2	743	c.672G>A	c.(670-672)AAG>AAA	p.K224K	CCR3_uc003cpg.1_Intron	NM_001295	NP_001286	P32246	CCR1_HUMAN	chemokine (C-C motif) receptor 1	224	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling|cytokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	integral to plasma membrane	C-C chemokine receptor activity			skin(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		TTAGCAGAATCTTTATAATCC	0.418													6	39					0	0	0.00198382	0	0
CCR3	1232	broad.mit.edu	37	3	46306740	46306740	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:46306740G>A	uc003cpg.1	+	4	634	c.91G>A	c.(91-93)GCA>ACA	p.A31T	CCR3_uc003cpi.1_Missense_Mutation_p.A31T|CCR3_uc003cpj.1_Missense_Mutation_p.A31T|CCR3_uc003cpk.1_Missense_Mutation_p.A52T|CCR3_uc010hjb.1_Missense_Mutation_p.A49T|CCR3_uc003cpl.1_Missense_Mutation_p.A64T	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	31	Extracellular (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		TGATACCAGAGCACTGATGGC	0.502													9	20					0	0	0.000274275	0	0
CCR5	1234	broad.mit.edu	37	3	46415098	46415098	+	Silent	SNP	G	A	A	rs147615392		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:46415098G>A	uc003cpo.3	+	3	827	c.705G>A	c.(703-705)AGG>AGA	p.R235R	CCR5_uc010hjd.2_Silent_p.R235R	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	235	Cytoplasmic (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	GGGCTGTGAGGCTTATCTTCA	0.473													102	186					0	0	0.000781405	0	0
NBEAL2	23218	broad.mit.edu	37	3	47030358	47030358	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:47030358C>T	uc003cqp.2	+	3	346	c.167C>T	c.(166-168)CCG>CTG	p.P56L	NBEAL2_uc003cqq.1_Missense_Mutation_p.P49L	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	56							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		GCAGAGGTCCCGCTGCTACCA	0.612													29	98					0	0	0.00058488	0	0
SETD2	29072	broad.mit.edu	37	3	47125334	47125334	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:47125334G>A	uc003cqs.2	-	12	5989	c.5936C>T	c.(5935-5937)CCA>CTA	p.P1979L	SETD2_uc003cqv.2_Missense_Mutation_p.P2046L|SETD2_uc003cqt.1_RNA	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1979					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		ATCTTGGGATGGTGTTTCTTC	0.448			N|F|S|Mis		clear cell renal carcinoma								31	101					0	0	0.001512	0	0
PLXNB1	5364	broad.mit.edu	37	3	48454559	48454559	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:48454559G>A	uc003csw.2	-	24	4825	c.4555C>T	c.(4555-4557)CTG>TTG	p.L1519L	PLXNB1_uc003cst.2_5'UTR|PLXNB1_uc003csu.2_Silent_p.L1336L|PLXNB1_uc003csx.2_Silent_p.L1519L	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1519	Cytoplasmic (Potential).|Potential.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TAGTCCCTCAGGGCCTGCTTG	0.597													47	92					0	0	0.000781405	0	0
COL7A1	1294	broad.mit.edu	37	3	48619044	48619044	+	Missense_Mutation	SNP	G	A	A	rs146418495		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:48619044G>A	uc003ctz.2	-	49	4745	c.4744C>T	c.(4744-4746)CCT>TCT	p.P1582S	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1582	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGTCTCCAGGAAGAACCAAG	0.567													21	77					0	0	0.00047179	0	0
BSN	8927	broad.mit.edu	37	3	49688509	49688509	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:49688509G>A	uc003cxe.3	+	4	2097	c.1983G>A	c.(1981-1983)GCG>GCA	p.A661A		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	661					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GTGGGGAGGCGGAGGTCAGTC	0.597													4	31					0	0	0.00024832	0	0
BSN	8927	broad.mit.edu	37	3	49698922	49698922	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:49698922C>T	uc003cxe.3	+	6	9758	c.9644C>T	c.(9643-9645)CCC>CTC	p.P3215L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3215					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCCACCTACCCCTCTGACTCA	0.587													37	94					0	0	0.000953801	0	0
IP6K1	9807	broad.mit.edu	37	3	49765668	49765668	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:49765668G>A	uc003cxm.1	-	5	975	c.660C>T	c.(658-660)CCC>CCT	p.P220P	IP6K1_uc003cxn.1_Silent_p.P55P|IP6K1_uc011bcv.1_Silent_p.P55P|IP6K1_uc003cxo.2_Silent_p.P220P	NM_153273	NP_695005	Q92551	IP6K1_HUMAN	inositol hexakisphosphate kinase 1 isoform 1	220	Substrate binding (By similarity).				phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						CCAACACGCAGGGGTACTTGA	0.592													17	64					0	0	0.00074312	0	0
CDHR4	389118	broad.mit.edu	37	3	49836345	49836345	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:49836345C>T	uc010hkz.2	-	4	418	c.409G>A	c.(409-411)GAA>AAA	p.E137K	CDHR4_uc003cxp.2_Missense_Mutation_p.G162E|CDHR4_uc011bcw.1_Missense_Mutation_p.E137K	NM_001007540	NP_001007541	A6H8M9	CDHR4_HUMAN	cadherin-like 29 precursor	137	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						TGAATCATTTCCCCAGCTGGC	0.637													5	20					0	0	0.000602214	0	0
TRAIP	10293	broad.mit.edu	37	3	49878431	49878431	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:49878431G>A	uc003cxs.1	-	8	798	c.692C>T	c.(691-693)TCC>TTC	p.S231F	TRAIP_uc010hla.1_Intron	NM_005879	NP_005870	Q9BWF2	TRAIP_HUMAN	TRAF interacting protein	231	Interaction with CYLD.|Potential.				cell proliferation|induction of apoptosis	perinuclear region of cytoplasm	protein binding|zinc ion binding			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GCTTCTGGAGGAAAACAAATC	0.507											OREG0015575	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	192					0	0	0.000781405	0	0
CAMKV	79012	broad.mit.edu	37	3	49898881	49898881	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:49898881C>T	uc003cxt.1	-	5	625	c.432G>A	c.(430-432)AGG>AGA	p.R144R	CAMKV_uc011bcy.1_Silent_p.R69R|CAMKV_uc003cxv.1_Silent_p.R144R|CAMKV_uc003cxw.1_5'UTR|CAMKV_uc003cxx.1_5'UTR|CAMKV_uc003cxu.2_Silent_p.R144R|CAMKV_uc011bcz.1_Silent_p.R107R|CAMKV_uc011bda.1_Silent_p.L101L|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	144	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CCTTGAGATTCCTGTGCACGA	0.607													23	47					0	0	0.000878237	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50421649	50421649	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:50421649G>A	uc003daq.2	-	6	668	c.630C>T	c.(628-630)ATC>ATT	p.I210I	CACNA2D2_uc003dap.2_Silent_p.I210I	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	210	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TGTCCGTAGGGATCTGTACAG	0.562													68	215					0	0	0.000781405	0	0
DOCK3	1795	broad.mit.edu	37	3	51393678	51393678	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:51393678G>A	uc011bds.1	+	42	4431	c.4408G>A	c.(4408-4410)GAA>AAA	p.E1470K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1470	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAAGGAGAATGAATTCAAGGT	0.488													11	25					0	0	0.000673444	0	0
GRM2	2912	broad.mit.edu	37	3	51747141	51747141	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:51747141G>T	uc010hlv.2	+	3	1342	c.1103G>T	c.(1102-1104)CGG>CTG	p.R368L	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	368	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CACTCTCTCCGGGCTGTGCCC	0.612													5	33					0.000602214	0.00211729	0.000602214	1	0
GRM2	2912	broad.mit.edu	37	3	51749225	51749225	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:51749225C>T	uc010hlv.2	+	4	1675	c.1436C>T	c.(1435-1437)ACT>ATT	p.T479I	GRM2_uc003dbo.3_5'UTR|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	479	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	GAAGGCTTGACTCTGGACACC	0.607													7	35					0	0	0.00198382	0	0
IQCF3	401067	broad.mit.edu	37	3	51864652	51864652	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:51864652C>T	uc010hlx.1	+	5	641	c.300C>T	c.(298-300)ATC>ATT	p.I100I	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	100	IQ.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AGTCCTGCATCCGCATGTGGC	0.597													16	69					0	0	0.00121646	0	0
IQCF3	401067	broad.mit.edu	37	3	51864774	51864774	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:51864774C>T	uc010hlx.1	+	5	763	c.422C>T	c.(421-423)CCT>CTT	p.P141L	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	141										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TATGCAATCCCTTCAAAGCAG	0.488													22	46					0	0	0.000720815	0	0
DNAH1	25981	broad.mit.edu	37	3	52397079	52397079	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:52397079C>T	uc011bef.1	+	32	5424	c.5163C>T	c.(5161-5163)TCC>TCT	p.S1721S		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1721	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CCCTCTATTCCTTTGGCTTTA	0.532													65	142					0	0	0.000781405	0	0
DNAH1	25981	broad.mit.edu	37	3	52417967	52417967	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:52417967G>A	uc011bef.1	+	52	8503	c.8242G>A	c.(8242-8244)GAA>AAA	p.E2748K	DNAH1_uc003ddv.2_5'Flank	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2748	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GTGGCCGGCAGAAGCCCTGAA	0.557													11	21					0	0	0.000673444	0	0
PHF7	51533	broad.mit.edu	37	3	52456247	52456247	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:52456247C>T	uc003ddy.2	+	9	1496	c.690C>T	c.(688-690)GCC>GCT	p.A230A	PHF7_uc003ddz.2_Intron	NM_016483	NP_057567	Q9BWX1	PHF7_HUMAN	PHD finger protein 7 isoform 1	230						nucleus	zinc ion binding			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;1.71e-05)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)|OV - Ovarian serous cystadenocarcinoma(275;0.0275)		GAGATGCTGCCTGGGAACTCG	0.493													30	96					0	0	0.0024448	0	0
STAB1	23166	broad.mit.edu	37	3	52538484	52538484	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:52538484C>T	uc003dej.2	+	11	1232	c.1158C>T	c.(1156-1158)GGC>GGT	p.G386G	STAB1_uc003dei.1_Silent_p.G386G	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	386	Extracellular (Potential).|FAS1 1.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CAGACCAGGGCTGCCGGGAAA	0.617													23	70					0	0	0.001512	0	0
ITIH1	3697	broad.mit.edu	37	3	52823770	52823770	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:52823770G>A	uc003dfs.2	+	19	2245	c.2221G>A	c.(2221-2223)GAC>AAC	p.D741N	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.D342N|ITIH1_uc010hmo.1_Missense_Mutation_p.D295N|ITIH1_uc003dfu.2_Missense_Mutation_p.D107N	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	741	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CCCTGCCACGGACTTTCAGTT	0.592													35	113					0	0	0.000692331	0	0
ERC2	26059	broad.mit.edu	37	3	55922428	55922428	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:55922428G>A	uc003dhr.1	-	14	2809	c.2553C>T	c.(2551-2553)ATC>ATT	p.I851I	ERC2_uc003dhq.1_RNA|ERC2_uc003dht.1_Silent_p.I330I	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	851	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TCATCTCCAGGATCTCCTCCA	0.537													30	90					0	0	0.00283554	0	0
ERC2	26059	broad.mit.edu	37	3	56468714	56468714	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:56468714C>T	uc003dhr.1	-	2	578	c.322G>A	c.(322-324)GGA>AGA	p.G108R		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	108						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TGGGAAAGTCCAGCAGAAGCA	0.527													27	75					0	0	0.00106085	0	0
ERC2	26059	broad.mit.edu	37	3	56468774	56468774	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:56468774G>A	uc003dhr.1	-	2	518	c.262C>T	c.(262-264)CGA>TGA	p.R88*		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	88						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TATACAGCTCGATTTGTAGCC	0.498													26	87					0	0	0.00283554	0	0
ERC2	26059	broad.mit.edu	37	3	56469002	56469002	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:56469002C>T	uc003dhr.1	-	2	290	c.34G>A	c.(34-36)GAA>AAA	p.E12K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	12						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GGGCTACCTTCCAGATTGGTG	0.458													8	30					0	0	0.000274275	0	0
APPL1	26060	broad.mit.edu	37	3	57294004	57294004	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:57294004C>T	uc003dio.2	+	17	1762	c.1615C>T	c.(1615-1617)CGT>TGT	p.R539C	APPL1_uc010hnb.2_Missense_Mutation_p.R539C|APPL1_uc011bey.1_Missense_Mutation_p.R522C	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	539	PID.				apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		TAACATCTTTCGTATGACAGA	0.378													17	51					0	0	0.00074312	0	0
FLNB	2317	broad.mit.edu	37	3	58107129	58107129	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:58107129C>T	uc003djj.2	+	20	3190	c.3025C>T	c.(3025-3027)CGG>TGG	p.R1009W	FLNB_uc010hne.2_Missense_Mutation_p.R1009W|FLNB_uc003djk.2_Missense_Mutation_p.R1009W|FLNB_uc010hnf.2_Missense_Mutation_p.R1009W|FLNB_uc003djl.2_Missense_Mutation_p.R840W|FLNB_uc003djm.2_Missense_Mutation_p.R840W	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1009	Filamin 8.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GTTCATCCCTCGGGAGGAGGG	0.622													23	93					0	0	0.00188189	0	0
KCTD6	200845	broad.mit.edu	37	3	58486915	58486915	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:58486915G>A	uc003dkj.3	+	3	387	c.270G>A	c.(268-270)CGG>CGA	p.R90R	KCTD6_uc003dki.3_Silent_p.R90R|KCTD6_uc003dkk.3_Silent_p.R90R	NM_001128214	NP_001121686	Q8NC69	KCTD6_HUMAN	potassium channel tetramerisation domain	90						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000177)|Kidney(10;0.00229)|KIRC - Kidney renal clear cell carcinoma(10;0.00258)|OV - Ovarian serous cystadenocarcinoma(275;0.148)		ATCTGCTTCGGAAAGAAGCAG	0.393													29	80					0	0	0.00209593	0	0
PTPRG	5793	broad.mit.edu	37	3	62204658	62204658	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:62204658G>A	uc003dlb.2	+	13	3007	c.2288_splice	c.e13+1	p.R763_splice	PTPRG_uc003dlc.2_Splice_Site_p.R763_splice|PTPRG_uc011bfi.1_Splice_Site_p.R38_splice	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G						transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		TTTACTGGAGGTAAGCCAGGC	0.562													38	101					0	0	0.00285205	0	0
CADPS	8618	broad.mit.edu	37	3	62423848	62423848	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:62423848G>A	uc003dll.2	-	28	4068	c.3708C>T	c.(3706-3708)TTC>TTT	p.F1236F	CADPS_uc003dlj.1_Silent_p.F191F|CADPS_uc003dlk.1_Silent_p.F684F|CADPS_uc003dlm.2_Silent_p.F1197F|CADPS_uc003dln.2_Silent_p.F1157F	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1236	Mediates targeting and association with DCVs (By similarity).				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AATGGCGGACGAAAGTCACGT	0.448													17	62					0	0	0.00278032	0	0
ATXN7	6314	broad.mit.edu	37	3	63967960	63967960	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:63967960C>T	uc003dlw.3	+	7	1404	c.851C>T	c.(850-852)TCC>TTC	p.S284F	ATXN7_uc003dlv.2_Missense_Mutation_p.S284F|ATXN7_uc010hnv.2_Missense_Mutation_p.S284F|ATXN7_uc011bfn.1_Missense_Mutation_p.S139F	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	284					cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		ACTGTGAGTTCCTTAGTCAAG	0.517													13	40					0	0	0.00185496	0	0
MAGI1	9223	broad.mit.edu	37	3	65346891	65346891	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:65346891C>T	uc003dmn.2	-	22	4143	c.3617G>A	c.(3616-3618)GGC>GAC	p.G1206D	MAGI1_uc003dmm.2_Missense_Mutation_p.G1234D|MAGI1_uc003dmo.2_Missense_Mutation_p.G1235D|MAGI1_uc003dmp.2_Missense_Mutation_p.G1139D	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1235					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TGGTACTGAGCCGTCTCCCCG	0.463													20	57					0	0	0.00047179	0	0
FAM19A1	407738	broad.mit.edu	37	3	68055884	68055884	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:68055884C>A	uc003dnd.2	+	2	331	c.115C>A	c.(115-117)CCA>ACA	p.P39T	FAM19A1_uc003dne.2_Missense_Mutation_p.P39T|FAM19A1_uc003dng.2_Missense_Mutation_p.P39T|FAM19A1_uc003dnf.1_RNA	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	39						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		CCTGCACAGACCAGGTAAGTC	0.493													27	71					7.07758e-08	2.50325e-07	0.000720815	1	0
FRMD4B	23150	broad.mit.edu	37	3	69239092	69239092	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:69239092G>A	uc003dnv.2	-	18	2016	c.1726C>T	c.(1726-1728)CCC>TCC	p.P576S	FRMD4B_uc003dnw.2_Intron|FRMD4B_uc003dnu.2_Missense_Mutation_p.P228S|FRMD4B_uc011bga.1_Missense_Mutation_p.P420S	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B	576						cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		CTCTCTGAGGGGATTATGTCT	0.328													17	64					0	0	0.00074312	0	0
FOXP1	27086	broad.mit.edu	37	3	71026984	71026984	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:71026984G>A	uc003dol.2	-	11	1666	c.1343C>T	c.(1342-1344)TCG>TTG	p.S448L	FOXP1_uc003dom.2_Missense_Mutation_p.S372L|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.S448L|FOXP1_uc003dop.2_Missense_Mutation_p.S448L|FOXP1_uc003doq.1_Missense_Mutation_p.S447L|FOXP1_uc003doi.2_Missense_Mutation_p.S348L|FOXP1_uc003doj.2_Missense_Mutation_p.S348L|FOXP1_uc003dok.2_Missense_Mutation_p.S261L|FOXP1_uc003dor.1_Missense_Mutation_p.S226L	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	448					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		TCTACCTGACGAAATGGGCAC	0.488			T	PAX5	ALL								29	71					0	0	0.0024448	0	0
CNTN3	5067	broad.mit.edu	37	3	74347186	74347186	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:74347186C>T	uc003dpm.1	-	17	2403	c.2323G>A	c.(2323-2325)GAA>AAA	p.E775K		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	775	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		ACTTTAACTTCATATGGTGAA	0.438													20	73					0	0	0.00047179	0	0
ROBO2	6092	broad.mit.edu	37	3	77607227	77607227	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:77607227G>A	uc003dpy.3	+	9	2007	c.1364G>A	c.(1363-1365)GGA>GAA	p.G455E	ROBO2_uc003dpz.2_Missense_Mutation_p.G459E|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.G459E	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	455	Ig-like C2-type 5.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TTAAAGGAGGGATTTACTTTT	0.443													7	26					0	0	0.000274275	0	0
ROBO2	6092	broad.mit.edu	37	3	77671460	77671460	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:77671460G>A	uc003dpy.3	+	23	4280	c.3637G>A	c.(3637-3639)GAA>AAA	p.E1213K	ROBO2_uc003dpz.2_Missense_Mutation_p.E1217K|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.E1217K	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1213	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TTCTGATTTGGAAACGGATGT	0.478													16	49					0	0	0.000566183	0	0
ROBO1	6091	broad.mit.edu	37	3	78683143	78683143	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:78683143T>C	uc003dqe.2	-	24	3631	c.3423A>G	c.(3421-3423)TCA>TCG	p.S1141S	ROBO1_uc003dqb.2_Silent_p.S1102S|ROBO1_uc003dqc.2_Silent_p.S1041S|ROBO1_uc003dqd.2_Silent_p.S1096S|ROBO1_uc010hoh.2_Silent_p.S333S|ROBO1_uc011bgl.1_Silent_p.S713S	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1141	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TCTGGTCGTATGATTGGTTGT	0.398													24	83					0	0	0.00178596	0	0
ROBO1	6091	broad.mit.edu	37	3	78710286	78710286	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:78710286G>A	uc003dqe.2	-	16	2422	c.2214C>T	c.(2212-2214)ATC>ATT	p.I738I	ROBO1_uc003dqb.2_Silent_p.I699I|ROBO1_uc003dqc.2_Silent_p.I702I|ROBO1_uc003dqd.2_Silent_p.I702I|ROBO1_uc010hoh.2_5'UTR|ROBO1_uc011bgl.1_Silent_p.I310I|ROBO1_uc003dqf.1_Silent_p.I417I	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	738	Extracellular (Potential).|Fibronectin type-III 2.				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TGAGATCAGGGATTACCACAC	0.423													16	32					0	0	0.000566183	0	0
EPHA3	2042	broad.mit.edu	37	3	89259013	89259013	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:89259013G>A	uc003dqy.2	+	3	382	c.157G>A	c.(157-159)GAA>AAA	p.E53K	EPHA3_uc003dqx.1_Missense_Mutation_p.E53K|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	53	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TCTTCAGTGGGAAGAGATCAG	0.403										TSP Lung(6;0.00050)			6	28					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	3	95374282	95374282	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:95374282C>T	uc003dro.1	-	5		c.1580G>A								Homo sapiens cDNA FLJ34909 fis, clone NT2RI2009301, moderately similar to BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL PRECURSOR.																		CCACATTCTTCCCTAGGGTTG	0.463													7	29					0	0	0.000157383	0	0
EPHA6	285220	broad.mit.edu	37	3	96706580	96706580	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:96706580G>A	uc010how.1	+	3	900	c.857G>A	c.(856-858)GGG>GAG	p.G286E	EPHA6_uc003drp.1_Missense_Mutation_p.G286E	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	191	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CAAGACATTGGGGCGTGCATT	0.458													60	125					0	0	0.000781405	0	0
EPHA6	285220	broad.mit.edu	37	3	97356793	97356793	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:97356793C>T	uc010how.1	+	14	2694	c.2651C>T	c.(2650-2652)TCT>TTT	p.S884F	EPHA6_uc011bgp.1_3'UTR|EPHA6_uc003drs.3_Missense_Mutation_p.S276F|EPHA6_uc003drr.3_Missense_Mutation_p.S276F|EPHA6_uc003drt.2_Missense_Mutation_p.S276F|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	789	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AAGTATCTTTCTGATATGGGT	0.448													32	136					0	0	0.0024448	0	0
OR5H14	403273	broad.mit.edu	37	3	97868484	97868484	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:97868484C>T	uc003dsg.1	+	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGATCAACTTCTTAGCTAAGA	0.393													52	91					0	0	0.000781405	0	0
OR5H14	403273	broad.mit.edu	37	3	97868593	97868593	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:97868593C>T	uc003dsg.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GGCATATGATCGCTATGTAGC	0.403													10	100					0	0	0.000442599	0	0
OR5K2	402135	broad.mit.edu	37	3	98217179	98217179	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:98217179C>T	uc011bgx.1	+	1	655	c.655C>T	c.(655-657)CTC>TTC	p.L219F		NM_001004737	NP_001004737	Q8NHB8	OR5K2_HUMAN	olfactory receptor, family 5, subfamily K,	219	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						AATATCTTATCTCTATATTCT	0.368													23	30					0	0	0.00047179	0	0
DCBLD2	131566	broad.mit.edu	37	3	98538094	98538094	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:98538094C>T	uc003dtd.2	-	8	1402	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K	DCBLD2_uc003dte.2_Missense_Mutation_p.E347K	NM_080927	NP_563615	Q96PD2	DCBD2_HUMAN	discoidin, CUB and LCCL domain containing 2	347	Extracellular (Potential).|F5/8 type C.				cell adhesion|intracellular receptor mediated signaling pathway|negative regulation of cell growth|wound healing	cell surface|integral to plasma membrane				ovary(2)|central_nervous_system(1)	3						CACTGGTATTCATCAGTGGCA	0.388													4	9					0	0	0.00024832	0	0
COL8A1	1295	broad.mit.edu	37	3	99513116	99513116	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:99513116G>A	uc003dtg.1	+	5	616	c.371G>A	c.(370-372)GGA>GAA	p.G124E	COL8A1_uc003dth.1_Missense_Mutation_p.G124E|COL8A1_uc003dti.1_Missense_Mutation_p.G125E	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	124	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGTCCCCGTGGAGAGCCTGGC	0.532													10	24					0	0	0.00136819	0	0
GPR128	84873	broad.mit.edu	37	3	100413737	100413737	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:100413737C>T	uc003duc.2	+	16	2554	c.2286C>T	c.(2284-2286)TTC>TTT	p.F762F	GPR128_uc011bhc.1_Silent_p.F463F|GPR128_uc003dud.2_Silent_p.F285F	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	762	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						TGTATAATTTCCTCAGGTCAT	0.458													15	68					0	0	0.000422831	0	0
ABI3BP	25890	broad.mit.edu	37	3	100645168	100645168	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:100645168C>T	uc003dun.2	-	2	343	c.258G>A	c.(256-258)GGG>GGA	p.G86G	ABI3BP_uc003duo.2_Silent_p.G79G|ABI3BP_uc003dup.3_Silent_p.G79G	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	86						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						CTGTGAATTTCCCTTCAGCGG	0.473													19	24					0	0	0.00229938	0	0
CBLB	868	broad.mit.edu	37	3	105378011	105378011	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:105378011G>A	uc003dwc.2	-	19	3074	c.2752C>T	c.(2752-2754)CAC>TAC	p.H918Y	CBLB_uc003dwa.2_Missense_Mutation_p.H133Y|CBLB_uc011bhi.1_Missense_Mutation_p.H896Y	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	918	Pro-rich.|Interaction with SH3KBP1.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						TTTCTGTGGTGAATTTCTGGT	0.473			Mis S		AML								13	89					0	0	0.00244969	0	0
BBX	56987	broad.mit.edu	37	3	107491750	107491750	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:107491750G>A	uc010hpr.2	+	11	1509	c.1182G>A	c.(1180-1182)AAG>AAA	p.K394K	BBX_uc003dwk.3_Silent_p.K394K|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Silent_p.K415K|BBX_uc003dwm.3_Silent_p.K394K|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	394					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			AAATTAGAAAGGAAGAGTTAG	0.318													5	53					0	0	0.00116845	0	0
HHLA2	11148	broad.mit.edu	37	3	108072555	108072555	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:108072555G>A	uc003dwy.3	+	4	513	c.346G>A	c.(346-348)GAA>AAA	p.E116K	HHLA2_uc011bhl.1_Missense_Mutation_p.E52K|HHLA2_uc010hpu.2_Missense_Mutation_p.E116K|HHLA2_uc003dwz.2_Missense_Mutation_p.E116K	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	116	Ig-like V-type 1.					integral to membrane				ovary(1)	1						CCTTCTGGACGAAGGAATTTA	0.398													6	37					0	0	0.000157383	0	0
DPPA4	55211	broad.mit.edu	37	3	109047753	109047753	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:109047753G>A	uc003dxq.3	-	6	917	c.862C>T	c.(862-864)CCC>TCC	p.P288S	DPPA4_uc011bho.1_3'UTR	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	288						nucleus	protein binding			upper_aerodigestive_tract(1)	1						ACACATTTGGGGCACAACATA	0.423													7	60					0	0	0.000274275	0	0
DPPA4	55211	broad.mit.edu	37	3	109050829	109050829	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:109050829C>T	uc003dxq.3	-	3	283	c.228G>A	c.(226-228)CAG>CAA	p.Q76Q	DPPA4_uc011bho.1_Silent_p.Q76Q|DPPA4_uc011bhp.1_Silent_p.Q76Q	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	76						nucleus	protein binding			upper_aerodigestive_tract(1)	1						GTATCTTCTTCTGAGGTCTGG	0.458													25	108					0	0	0.000586117	0	0
BTLA	151888	broad.mit.edu	37	3	112184974	112184974	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:112184974G>A	uc003dza.3	-	5	1054	c.851C>T	c.(850-852)TCC>TTC	p.S284F	BTLA_uc003dzb.3_Missense_Mutation_p.S236F	NM_181780	NP_861445	Q7Z6A9	BTLA_HUMAN	B and T lymphocyte associated isoform 1	284	Cytoplasmic (Potential).				T cell costimulation		receptor activity				0		Acute lymphoblastic leukemia(4;1.34e-07)|all_hematologic(4;0.000361)				CACACATATGGATGCATATTC	0.418													18	163					0	0	0.00152264	0	0
CCDC80	151887	broad.mit.edu	37	3	112337925	112337925	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:112337925C>T	uc003dzf.2	-	4	2280	c.2062G>A	c.(2062-2064)GAT>AAT	p.D688N	CCDC80_uc011bhv.1_Missense_Mutation_p.D688N|CCDC80_uc003dzg.2_Missense_Mutation_p.D688N|CCDC80_uc003dzh.1_Missense_Mutation_p.D688N	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	688										ovary(2)	2						TCTTCATCATCCACCACTCGC	0.458													7	36					0	0	0.000157383	0	0
CCDC52	152185	broad.mit.edu	37	3	113172677	113172677	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:113172677G>A	uc003eag.3	-	14	2069	c.1778C>T	c.(1777-1779)TCA>TTA	p.S593L	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Missense_Mutation_p.S489L	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	593					cell division|mitosis	centriole|spindle	protein binding				0						CTCTTCACTTGAATTCTGAAT	0.428													40	74					0	0	0.000781405	0	0
SIDT1	54847	broad.mit.edu	37	3	113300238	113300238	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:113300238G>A	uc003eak.2	+	6	1345	c.694G>A	c.(694-696)GAA>AAA	p.E232K	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.E232K|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	232	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						CCACAATGTGGAATTTAATGG	0.453													22	58					0	0	0.00127121	0	0
CD80	941	broad.mit.edu	37	3	119263484	119263484	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:119263484C>T	uc003ecq.2	-	3	726	c.331G>A	c.(331-333)GAG>AAG	p.E111K	CD80_uc010hqt.1_Missense_Mutation_p.E111K|CD80_uc010hqu.1_Missense_Mutation_p.E111K|CD80_uc003ecr.1_Missense_Mutation_p.E111K	NM_005191	NP_005182	P33681	CD80_HUMAN	CD80 antigen precursor	111	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms|intracellular signal transduction|positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of signal transduction|positive regulation of T-helper 1 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation	intracellular	coreceptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2					Abatacept(DB01281)	TATGTGCCCTCGTCAGATGGG	0.478													29	59					0	0	0.00127121	0	0
POPDC2	64091	broad.mit.edu	37	3	119378958	119378958	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:119378958G>A	uc003ecx.1	-	1	447	c.313C>T	c.(313-315)CCT>TCT	p.P105S	POPDC2_uc010hqw.1_Missense_Mutation_p.P105S|POPDC2_uc003ecy.1_Intron	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	105						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		AACTCCTCAGGGAGGGTGTCC	0.582													21	70					0	0	0.00188189	0	0
STXBP5L	9515	broad.mit.edu	37	3	120976111	120976111	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:120976111G>A	uc003eec.3	+	17	1903	c.1763G>A	c.(1762-1764)AGG>AAG	p.R588K	STXBP5L_uc011bji.1_Missense_Mutation_p.R588K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	588	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CCTTCTTCAAGGAGTCTTTCT	0.413													19	102					0	0	0.00074312	0	0
STXBP5L	9515	broad.mit.edu	37	3	121100303	121100303	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:121100303G>A	uc003eec.3	+	23	2723	c.2583G>A	c.(2581-2583)ATG>ATA	p.M861I	STXBP5L_uc011bji.1_Missense_Mutation_p.M837I	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	861	WD 11.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GTCTGGGAATGGTGTTAATCA	0.408													18	65					0	0	0.000566183	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126217	121126217	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:121126217G>A	uc003eec.3	+	24	2927	c.2787G>A	c.(2785-2787)TGG>TGA	p.W929*	STXBP5L_uc011bji.1_Nonsense_Mutation_p.W905*	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	929	WD 12.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AAAAATCTTGGAGAAGGAAAG	0.393													5	21					0	0	0.000602214	0	0
HCLS1	3059	broad.mit.edu	37	3	121350826	121350826	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:121350826C>T	uc003eeh.3	-	14	1453	c.1328G>A	c.(1327-1329)GGA>GAA	p.G443E	HCLS1_uc011bjj.1_Missense_Mutation_p.G406E	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	443	SH3.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		CTCATCACTTCCCTCTGGGGA	0.522													46	103					0	0	0.000781405	0	0
HCLS1	3059	broad.mit.edu	37	3	121354611	121354611	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:121354611G>A	uc003eeh.3	-	9	787	c.662C>T	c.(661-663)GCT>GTT	p.A221V	HCLS1_uc011bjj.1_Missense_Mutation_p.A184V|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	221					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		CTTCTTATAAGCTGTGGTCGG	0.542													10	93					0	0	0.000978159	0	0
HCLS1	3059	broad.mit.edu	37	3	121361820	121361820	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:121361820G>A	uc003eeh.3	-	6	533	c.408C>T	c.(406-408)GTC>GTT	p.V136V	HCLS1_uc011bjj.1_Silent_p.V136V|HCLS1_uc011bjk.1_Intron	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	136	Cortactin 2.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		AATCAAAGCCGACTGCTGACT	0.507													39	119					0	0	0.0025221	0	0
CASR	846	broad.mit.edu	37	3	121975937	121975937	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:121975937C>T	uc003eev.3	+	3	567	c.195C>T	c.(193-195)TTC>TTT	p.F65F	CASR_uc003eew.3_Silent_p.F65F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	65	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GGTATAATTTCCGTGGGTTTC	0.348													10	53					0	0	0.00136819	0	0
CASR	846	broad.mit.edu	37	3	121980902	121980902	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:121980902G>A	uc003eev.3	+	4	1392	c.1020G>A	c.(1018-1020)AGG>AGA	p.R340R	CASR_uc003eew.3_Silent_p.R340R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	340	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TCCATCCCAGGAAGTCTGTCC	0.517													8	43					0	0	0.000274275	0	0
PARP9	83666	broad.mit.edu	37	3	122271276	122271276	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:122271276G>A	uc010hri.2	-	5	1346	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S	PARP9_uc003eff.3_Missense_Mutation_p.P366S|PARP9_uc011bjs.1_Missense_Mutation_p.P366S|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Missense_Mutation_p.P366S|PARP9_uc003efh.2_Missense_Mutation_p.P401S|PARP9_uc003efj.2_Missense_Mutation_p.P366S	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	401	Macro 2.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		TGAGGTTTAGGAAATTCTGAA	0.318													18	38					0	0	0.00074312	0	0
SEMA5B	54437	broad.mit.edu	37	3	122629685	122629685	+	Splice_Site	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:122629685A>C	uc003efz.1	-	22	3601	c.3297_splice	c.e22+1	p.K1099_splice	SEMA5B_uc011bju.1_Splice_Site_p.K1005_splice|SEMA5B_uc003ega.1_Splice_Site|SEMA5B_uc003efy.1_Splice_Site_p.K77_splice	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1						cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		gaaGGCTCCCACCTTGAATTC	0.303													5	47					0	0	0.000958276	0	0
ADCY5	111	broad.mit.edu	37	3	123014945	123014945	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:123014945G>A	uc003egh.1	-	17	3049	c.3049C>T	c.(3049-3051)CTC>TTC	p.L1017F	ADCY5_uc003egg.1_Missense_Mutation_p.L675F	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	1017	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		AGTTTCCAGAGGAAGTCGAGG	0.642													11	51					0	0	0.000673444	0	0
KALRN	8997	broad.mit.edu	37	3	124398310	124398310	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:124398310G>A	uc003ehg.2	+	51	7450	c.7323G>A	c.(7321-7323)ACG>ACA	p.T2441T	KALRN_uc003ehk.2_Silent_p.T744T	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2440					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TCAAGGAGACGAACAGTTCCG	0.438													62	138					0	0	0.000781405	0	0
MUC13	56667	broad.mit.edu	37	3	124642388	124642388	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:124642388G>A	uc003ehq.1	-	3	644	c.620C>T	c.(619-621)TCT>TTT	p.S207F		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	207	EGF-like 1.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						CTTACATGTAGAAGAGTTGTA	0.398													12	49					0	0	0.000308642	0	0
ZNF148	7707	broad.mit.edu	37	3	124951657	124951657	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:124951657G>A	uc003ehx.3	-	9	2399	c.1913C>T	c.(1912-1914)CCA>CTA	p.P638L	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.P638L|ZNF148_uc010hsa.2_Missense_Mutation_p.P638L|ZNF148_uc003eia.3_Missense_Mutation_p.P638L|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	638					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						TGGCTGATTTGGGAGGGTCTG	0.453													21	122					0	0	0.000586117	0	0
UROC1	131669	broad.mit.edu	37	3	126229626	126229626	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:126229626C>A	uc003eiz.1	-	2	170	c.138G>T	c.(136-138)AGG>AGT	p.R46S	UROC1_uc010hsi.1_Missense_Mutation_p.R46S	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	46					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		GCAGGGCGTTCCTCAGCGCCA	0.642													10	36					0.000978159	0.00343362	0.000978159	1	0
C3orf22	152065	broad.mit.edu	37	3	126268807	126268807	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:126268807G>A	uc003ejb.2	-	4	659	c.330C>T	c.(328-330)TTC>TTT	p.F110F		NM_152533	NP_689746	Q8N5N4	CC022_HUMAN	hypothetical protein LOC152065	110											0				GBM - Glioblastoma multiforme(114;0.147)		GTTGTCTGGGGAAGCGGCGAC	0.622													9	64					0	0	0.000978159	0	0
ABTB1	80325	broad.mit.edu	37	3	127396078	127396078	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:127396078C>T	uc003ejt.2	+	8	799	c.711C>T	c.(709-711)CTC>CTT	p.L237L	ABTB1_uc003ejr.2_Silent_p.L95L|ABTB1_uc003ejs.2_Silent_p.L212L|ABTB1_uc003eju.2_Silent_p.L95L|ABTB1_uc010hsm.2_5'UTR	NM_172027	NP_742024	Q969K4	ABTB1_HUMAN	ankyrin repeat and BTB (POZ) domain containing 1	237						cytoplasm|nucleolus|plasma membrane	translation elongation factor activity				0						ACCCCCGCCTCCGGGAGGACA	0.667													5	9					0	0	0.000602214	0	0
COL29A1	256076	broad.mit.edu	37	3	130095440	130095440	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:130095440C>T	uc010htj.1	+	3	922	c.428C>T	c.(427-429)TCG>TTG	p.S143L	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	143	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						GTCCTGGCTTCGGCTGAGTCT	0.502													4	6					0	0	0.00024832	0	0
COL29A1	256076	broad.mit.edu	37	3	130159097	130159097	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:130159097G>A	uc010htj.1	+	35	6409	c.5915G>A	c.(5914-5916)CGG>CAG	p.R1972Q	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.R11Q	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	1972	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						GACAATTCTCGGAATATAGCA	0.398													9	20					0	0	0.000673444	0	0
COL6A6	131873	broad.mit.edu	37	3	130285598	130285598	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:130285598G>A	uc010htl.2	+	4	1366	c.1335G>A	c.(1333-1335)GGG>GGA	p.G445G		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	445	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATGGCTCAGGGAGCACCCAGG	0.493													5	30					0	0	0.000602214	0	0
COL6A6	131873	broad.mit.edu	37	3	130286904	130286904	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:130286904G>A	uc010htl.2	+	5	1888	c.1857G>A	c.(1855-1857)ATG>ATA	p.M619I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	619	Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GCAAAGAGATGAAAGCTGACA	0.358													18	51					0	0	0.00121646	0	0
COL6A6	131873	broad.mit.edu	37	3	130292986	130292986	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:130292986G>A	uc010htl.2	+	7	3195	c.3164G>A	c.(3163-3165)GGA>GAA	p.G1055E		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1055	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TTTCCACTGGGAACTTTCATA	0.453													7	29					0	0	0.00198382	0	0
COL6A6	131873	broad.mit.edu	37	3	130308001	130308001	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:130308001G>A	uc010htl.2	+	11	4224	c.4193G>A	c.(4192-4194)GGA>GAA	p.G1398E	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1398	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GGCACAATGGGAGATCCTGGA	0.428													9	31					0	0	0.000673444	0	0
COL6A6	131873	broad.mit.edu	37	3	130312062	130312062	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:130312062G>A	uc010htl.2	+	16	4467	c.4436G>A	c.(4435-4437)GGA>GAA	p.G1479E	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1479	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GGTCTTCCTGGAAGAAAAGGA	0.378													21	43					0	0	0.00229938	0	0
AMOTL2	51421	broad.mit.edu	37	3	134079153	134079153	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:134079153G>A	uc003eqf.2	-	7	1969	c.1852C>T	c.(1852-1854)CTG>TTG	p.L618L	AMOTL2_uc003eqg.1_Silent_p.L560L|AMOTL2_uc003eqh.1_Silent_p.L558L|AMOTL2_uc003eqe.1_Silent_p.L185L	NM_016201	NP_057285	Q9Y2J4	AMOL2_HUMAN	angiomotin like 2	560	Potential.									large_intestine(1)	1						TCCAGCGCCAGGATCTGCTCC	0.612													10	53					0	0	0.000673444	0	0
EPHB1	2047	broad.mit.edu	37	3	134851825	134851825	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:134851825G>A	uc003eqt.2	+	5	1451	c.1231G>A	c.(1231-1233)GGA>AGA	p.G411R	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_3'UTR|EPHB1_uc003equ.2_5'UTR	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	411	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GGCCATCAATGGAGTCTCCAG	0.592													7	36					0	0	0.000157383	0	0
TXNDC6	347736	broad.mit.edu	37	3	138023816	138023816	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:138023816C>T	uc003esg.2	-	9	718	c.690G>A	c.(688-690)CTG>CTA	p.L230L	TXNDC6_uc003esd.1_Intron|TXNDC6_uc010huf.1_Silent_p.L145L|TXNDC6_uc003ese.1_Silent_p.L169L	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	230	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						TGGTGAGGATCAGGAGGTGGC	0.602													46	289					0	0	0.000781405	0	0
ESYT3	83850	broad.mit.edu	37	3	138183346	138183346	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:138183346G>A	uc003esk.2	+	9	1301	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	359	C2 1.					integral to membrane|plasma membrane					0						CACCTGGAACGAAGTGTTTGA	0.582													36	190					0	0	0.00111076	0	0
PRR23B	389151	broad.mit.edu	37	3	138739176	138739176	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:138739176C>T	uc003esy.1	-	1	593	c.328G>A	c.(328-330)GAA>AAA	p.E110K		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	110										breast(1)	1						CCTGAGCGTTCGTCGACGGAG	0.642													13	74					0	0	0.000422831	0	0
SLC9A9	285195	broad.mit.edu	37	3	143513894	143513894	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:143513894G>A	uc003evn.2	-	4	664	c.482C>T	c.(481-483)TCT>TTT	p.S161F	SLC9A9_uc011bnk.1_Missense_Mutation_p.S35F	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	161					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						CGTTAAAATAGATCCTAAGTT	0.373													8	50					0	0	0.000442599	0	0
PLOD2	5352	broad.mit.edu	37	3	145799564	145799564	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:145799564C>T	uc003evs.1	-	12	1825	c.1319G>A	c.(1318-1320)CGA>CAA	p.R440Q	PLOD2_uc003evq.1_Missense_Mutation_p.R100Q|PLOD2_uc011bnm.1_Missense_Mutation_p.R385Q|PLOD2_uc003evr.1_Missense_Mutation_p.R440Q	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	440					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	ATCTTCAGATCGTGCATAGTA	0.368													17	37					0	0	0.000958276	0	0
CP	1356	broad.mit.edu	37	3	148916180	148916180	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:148916180C>T	uc003ewy.3	-	9	1940	c.1687G>A	c.(1687-1689)GGA>AGA	p.G563R	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Missense_Mutation_p.G344R|CP_uc003ewz.2_Missense_Mutation_p.G563R|CP_uc010hvf.1_Missense_Mutation_p.G289R	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	563	F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	TGTAAACTTCCTTTCTTGCAT	0.358													22	40					0	0	0.000586117	0	0
TM4SF4	7104	broad.mit.edu	37	3	149193655	149193655	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:149193655T>C	uc003exd.1	+	2	451	c.220T>C	c.(220-222)TGC>CGC	p.C74R		NM_004617	NP_004608	P48230	T4S4_HUMAN	transmembrane 4 superfamily member 4	74	Cytoplasmic (Potential).					integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GAACAATGACTGCTGTGGGTG	0.567													10	8					0	0	0.000308642	0	0
TSC22D2	9819	broad.mit.edu	37	3	150176403	150176404	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:150176403_150176404CC>AT	uc003exv.2	+	4	2673_2674	c.2323_2324CC>AT	c.(2323-2325)CCG>ATG	p.P775M	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Missense_Mutation_p.P751M	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	775							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TCCACAGCAGCCGAATGTCTCC	0.47													7	47					0	0	6.4e-05	0	0
AADAC	13	broad.mit.edu	37	3	151545949	151545949	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:151545949G>A	uc003eze.2	+	5	1279	c.1189G>A	c.(1189-1191)GAA>AAA	p.E397K		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	397	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GTGGCTAAAGGAAAATCTATA	0.303													13	19					0	0	0.00136819	0	0
SUCNR1	56670	broad.mit.edu	37	3	151598689	151598689	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:151598689C>T	uc003ezf.1	+	3	457	c.358C>T	c.(358-360)CGA>TGA	p.R120*		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	120	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	CAGCATAGATCGATACTTGAT	0.383													17	37					0	0	0.000566183	0	0
MME	4311	broad.mit.edu	37	3	154886520	154886520	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:154886520G>A	uc010hvr.1	+	20	2126	c.1915_splice	c.e20-1	p.L639_splice	MME_uc003fab.1_Splice_Site_p.L639_splice|MME_uc003fac.1_Splice_Site_p.L639_splice|MME_uc003fad.1_Splice_Site_p.L639_splice|MME_uc003fae.1_Splice_Site_p.L639_splice	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase						cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	TTTTTTAACAGCTTAATGGAA	0.299													13	58					0	0	0.00185496	0	0
PLCH1	23007	broad.mit.edu	37	3	155311961	155311961	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:155311961G>A	uc011bok.1	-	3	480	c.203C>T	c.(202-204)TCC>TTC	p.S68F	PLCH1_uc011boj.1_Missense_Mutation_p.S68F|PLCH1_uc011bol.1_Missense_Mutation_p.S50F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	68	PH.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTTGTAAATGGAATCAATAAG	0.423													14	59					0	0	0.000308642	0	0
C3orf33	285315	broad.mit.edu	37	3	155485418	155485418	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:155485418T>C	uc003fal.1	-	5	504	c.234A>G	c.(232-234)GTA>GTG	p.V78V	C3orf33_uc003fam.1_Silent_p.V121V	NM_173657	NP_775928	Q96NB5	Q96NB5_HUMAN	hypothetical protein LOC285315	78							hydrolase activity, acting on ester bonds|nucleic acid binding				0			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CAGCGAGTTCTACTCCAGCCA	0.408													4	23					0	0	0.000602214	0	0
GMPS	8833	broad.mit.edu	37	3	155629027	155629027	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:155629027C>T	uc003faq.2	+	7	1180	c.845C>T	c.(844-846)TCT>TTT	p.S282F	GMPS_uc011bom.1_Missense_Mutation_p.S183F	NM_003875	NP_003866	P49915	GUAA_HUMAN	guanine monophosphate synthetase	282					glutamine metabolic process|purine base biosynthetic process	cytosol	ATP binding|GMP synthase (glutamine-hydrolyzing) activity|GMP synthase activity			ovary(2)|lung(1)	3			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GAAAGCCAGTCTGTTGAAGAG	0.378			T	MLL	AML								12	36					0	0	0.000978159	0	0
KCNAB1	7881	broad.mit.edu	37	3	156192535	156192535	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:156192535C>T	uc003far.2	+	8	648	c.584C>T	c.(583-585)TCC>TTC	p.S195F	KCNAB1_uc011bon.1_Intron|KCNAB1_uc003fas.2_Missense_Mutation_p.S184F|KCNAB1_uc003fat.2_Missense_Mutation_p.S177F|KCNAB1_uc010hvt.1_Intron|KCNAB1_uc011boo.1_Missense_Mutation_p.S71F	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	195						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TTGAAGGGCTCCCTCCAGAGG	0.428													26	75					0	0	0.00127121	0	0
PPM1L	151742	broad.mit.edu	37	3	160783332	160783332	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:160783332G>A	uc003fdr.2	+	3	817	c.716G>A	c.(715-717)AGA>AAA	p.R239K	PPM1L_uc003fds.2_Missense_Mutation_p.R60K|PPM1L_uc003fdt.2_Missense_Mutation_p.R112K|PPM1L_uc010hwf.2_RNA	NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	239	Cytoplasmic (Potential).|PP2C-like.				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			TTGAAGGAAAGAAAGAGGATA	0.507													5	28					0	0	0.000602214	0	0
SI	6476	broad.mit.edu	37	3	164700134	164700134	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:164700134G>A	uc003fei.2	-	47	5374	c.5312C>T	c.(5311-5313)TCC>TTC	p.S1771F		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1771	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity	p.S1771S(1)		ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TACATGAAGGGATCCAAGCCT	0.348										HNSCC(35;0.089)			7	19					0	0	0.00198382	0	0
SI	6476	broad.mit.edu	37	3	164724631	164724631	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:164724631C>T	uc003fei.2	-	37	4441	c.4379G>A	c.(4378-4380)GGA>GAA	p.G1460E		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1460	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CTGTGACCATCCATAGAGATT	0.343										HNSCC(35;0.089)			12	54					0	0	0.00136819	0	0
SI	6476	broad.mit.edu	37	3	164725726	164725726	+	Missense_Mutation	SNP	C	T	T	rs145734588	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:164725726C>T	uc003fei.2	-	36	4302	c.4240G>A	c.(4240-4242)GAA>AAA	p.E1414K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1414	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TAATTTAGTTCGTCATTTCTG	0.244										HNSCC(35;0.089)			24	154					0	0	0.00178596	0	0
SI	6476	broad.mit.edu	37	3	164748504	164748504	+	Missense_Mutation	SNP	C	G	G	rs148434280	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:164748504C>G	uc003fei.2	-	25	2950	c.2888G>C	c.(2887-2889)AGA>ACA	p.R963T		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	963	Lumenal.|P-type 2.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TATTACCGTTCTCCATACACA	0.299										HNSCC(35;0.089)			9	33					0	0	0.000442599	0	0
SI	6476	broad.mit.edu	37	3	164773033	164773033	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:164773033T>C	uc003fei.2	-	13	1523	c.1461A>G	c.(1459-1461)GCA>GCG	p.A487A		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	487	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGCATTCATTTGCCCACCAAT	0.343										HNSCC(35;0.089)			14	108					0	0	0.000566183	0	0
MECOM	2122	broad.mit.edu	37	3	168834404	168834404	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:168834404G>A	uc003ffi.3	-	7	961	c.692C>T	c.(691-693)TCC>TTC	p.S231F	MECOM_uc010hwk.1_Missense_Mutation_p.S254F|MECOM_uc003ffj.3_Missense_Mutation_p.S296F|MECOM_uc011bpi.1_Missense_Mutation_p.S232F|MECOM_uc003ffn.3_Missense_Mutation_p.S231F|MECOM_uc003ffk.2_Missense_Mutation_p.S231F|MECOM_uc003ffl.2_Missense_Mutation_p.S391F|MECOM_uc011bpj.1_Missense_Mutation_p.S419F|MECOM_uc011bpk.1_Missense_Mutation_p.S221F|MECOM_uc010hwn.2_Missense_Mutation_p.S419F	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	231	Interaction with MAPK9, SMAD3 and probably SUV39H1.|C2H2-type 7.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TTTATTTAAGGAAGACGTAGT	0.453													28	67					0	0	0.001512	0	0
SLC7A14	57709	broad.mit.edu	37	3	170216597	170216597	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:170216597C>A	uc003fgz.2	-	4	934	c.618G>T	c.(616-618)GGG>GGT	p.G206G	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	206	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			AATTCTTCACCCCCAGAGCAA	0.463													20	81					2.39556e-15	8.5067e-15	0.00278032	1	0
NCEH1	57552	broad.mit.edu	37	3	172365750	172365750	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:172365750G>A	uc011bpx.1	-	2	527	c.389C>T	c.(388-390)CCT>CTT	p.P130L	NCEH1_uc003fig.2_Missense_Mutation_p.P130L|NCEH1_uc011bpw.1_5'UTR|NCEH1_uc011bpy.1_Intron	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	98	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						GGGCTTCGGAGGGCCTTCAAA	0.527													7	54					0	0	0.00198382	0	0
PIK3CA	5290	broad.mit.edu	37	3	178937063	178937063	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:178937063C>T	uc003fjk.2	+	11	1901	c.1744C>T	c.(1744-1746)CAG>TAG	p.Q582*		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	582	PI3K helical.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TGAAGTAGCCCAGGTAAATGT	0.333		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			8	23					0	0	0.000157383	0	0
ABCF3	55324	broad.mit.edu	37	3	183910650	183910650	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:183910650C>T	uc003fmz.2	+	18	1849	c.1716C>T	c.(1714-1716)GTC>GTT	p.V572V	ABCF3_uc003fna.2_Silent_p.V566V|ABCF3_uc003fnb.2_Silent_p.V253V	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	572	ABC transporter 2.						ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ACCTAAACGTCAGTGCTGTGG	0.542													35	72					0	0	0.000953801	0	0
EIF4G1	1981	broad.mit.edu	37	3	184042702	184042702	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:184042702G>A	uc003fnp.2	+	18	2854	c.2656G>A	c.(2656-2658)GAG>AAG	p.E886K	EIF4G1_uc003fno.1_Missense_Mutation_p.E827K|EIF4G1_uc010hxw.1_Missense_Mutation_p.E722K|EIF4G1_uc003fnt.2_Missense_Mutation_p.E597K|EIF4G1_uc003fnq.2_Missense_Mutation_p.E799K|EIF4G1_uc003fnr.2_Missense_Mutation_p.E722K|EIF4G1_uc010hxx.2_Missense_Mutation_p.E893K|EIF4G1_uc003fns.2_Missense_Mutation_p.E846K|EIF4G1_uc010hxy.2_Missense_Mutation_p.E893K|EIF4G1_uc003fnv.3_Missense_Mutation_p.E887K|EIF4G1_uc003fnu.3_Missense_Mutation_p.E886K|EIF4G1_uc003fnw.2_Missense_Mutation_p.E893K|EIF4G1_uc003fnx.2_Missense_Mutation_p.E691K|EIF4G1_uc003fny.3_Missense_Mutation_p.E690K|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	886	eIF3/EIF4A-binding.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGAGCTGGAAGAGGCTCGGGA	0.488													51	103					0	0	0.000781405	0	0
EIF4G1	1981	broad.mit.edu	37	3	184043652	184043652	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:184043652C>T	uc003fnp.2	+	21	3333	c.3135C>T	c.(3133-3135)CCC>CCT	p.P1045P	EIF4G1_uc003fnt.2_Silent_p.P756P|EIF4G1_uc003fnq.2_Silent_p.P958P|EIF4G1_uc003fnr.2_Silent_p.P881P|EIF4G1_uc010hxx.2_Silent_p.P1052P|EIF4G1_uc003fns.2_Silent_p.P1005P|EIF4G1_uc010hxy.2_Silent_p.P1052P|EIF4G1_uc003fnv.3_Silent_p.P1046P|EIF4G1_uc003fnu.3_Silent_p.P1045P|EIF4G1_uc003fnw.2_Silent_p.P1052P|EIF4G1_uc003fnx.2_Silent_p.P850P|EIF4G1_uc003fny.3_Silent_p.P849P|EIF4G1_uc003foa.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	1045	eIF3/EIF4A-binding.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GTGGACTTCCCCTTGTGGATG	0.557													68	208					0	0	0.000781405	0	0
FAM131A	131408	broad.mit.edu	37	3	184059642	184059642	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:184059642C>T	uc003fog.2	+	1	1385	c.21C>T	c.(19-21)TCC>TCT	p.S7S	FAM131A_uc003fob.1_Intron|FAM131A_uc003foc.2_Intron|FAM131A_uc003foe.2_Intron	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	7						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCACTTTGTCCTTTCTCCTCC	0.572													35	219					0	0	0.00195071	0	0
FAM131A	131408	broad.mit.edu	37	3	184062320	184062321	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:184062320_184062321GG>AA	uc003fog.2	+	3	1934_1935	c.570_571GG>AA	c.(568-573)CAGGAC>CAAAAC	p.D191N	FAM131A_uc003fob.1_Missense_Mutation_p.D99N|FAM131A_uc003foc.2_Missense_Mutation_p.D137N|FAM131A_uc003foe.2_Missense_Mutation_p.D137N	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	191						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CGCACCTCCAGGACCTGTTCAC	0.634													20	152					0	0	6.4e-05	0	0
HRG	3273	broad.mit.edu	37	3	186394960	186394960	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:186394960C>T	uc003fqq.2	+	7	889	c.866C>T	c.(865-867)CCC>CTC	p.P289L		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	289	Pro-rich.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		CATCATCATCCCCACAAGCCA	0.557													7	58					0	0	0.000274275	0	0
ATP13A4	84239	broad.mit.edu	37	3	193185121	193185121	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:193185121G>A	uc003ftd.2	-	10	1206	c.1098C>T	c.(1096-1098)GCC>GCT	p.A366A	ATP13A4_uc003fte.1_Silent_p.A366A|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Silent_p.A72A	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	366	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GCAGTACCACGGCTCTCACGG	0.463													14	30					0	0	0.00244969	0	0
LSG1	55341	broad.mit.edu	37	3	194371730	194371730	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:194371730G>A	uc003fui.2	-	10	1614	c.1299C>T	c.(1297-1299)CTC>CTT	p.L433L		NM_018385	NP_060855	Q9H089	LSG1_HUMAN	large subunit GTPase 1	433	G.				nuclear export|protein transport	Cajal body|endoplasmic reticulum	GTP binding|hydrolase activity				0	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;7.55e-06)		CACACAGGCAGAGGCCAGGCT	0.488													9	48					0	0	0.000978159	0	0
LSG1	55341	broad.mit.edu	37	3	194373548	194373548	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:194373548G>A	uc003fui.2	-	8	1398	c.1083C>T	c.(1081-1083)AGC>AGT	p.S361S		NM_018385	NP_060855	Q9H089	LSG1_HUMAN	large subunit GTPase 1	361					nuclear export|protein transport	Cajal body|endoplasmic reticulum	GTP binding|hydrolase activity				0	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;7.55e-06)		ATACCAGATGGCTAAAATTGT	0.502													23	126					0	0	0.00278032	0	0
MUC4	4585	broad.mit.edu	37	3	195492185	195492185	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:195492185C>T	uc011bto.1	-	10	13830	c.13370G>A	c.(13369-13371)TGG>TAG	p.W4457*	MUC4_uc003fuz.2_Nonsense_Mutation_p.W183*|MUC4_uc003fva.2_Nonsense_Mutation_p.W65*|MUC4_uc003fvb.2_Nonsense_Mutation_p.W101*|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Nonsense_Mutation_p.W101*|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Nonsense_Mutation_p.W65*|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Nonsense_Mutation_p.W149*|MUC4_uc011bti.1_Nonsense_Mutation_p.W149*|MUC4_uc011btj.1_Nonsense_Mutation_p.W326*|MUC4_uc011btk.1_Nonsense_Mutation_p.W65*|MUC4_uc011btl.1_Nonsense_Mutation_p.W94*|MUC4_uc011btm.1_Nonsense_Mutation_p.W274*|MUC4_uc011btn.1_Nonsense_Mutation_p.W65*|MUC4_uc003fvo.2_Nonsense_Mutation_p.W349*|MUC4_uc003fvp.2_Nonsense_Mutation_p.W298*|MUC4_uc010hzu.1_Nonsense_Mutation_p.W1197*	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1342	AMOP.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TCCCTGCTGCCAGGAACAAGG	0.642													8	35					0	0	0.000157383	0	0
PIGX	54965	broad.mit.edu	37	3	196449298	196449298	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:196449298C>T	uc010iaj.2	+	3	347	c.66C>T	c.(64-66)ATC>ATT	p.I22I	PIGX_uc003fwx.3_Silent_p.I22I|PIGX_uc011btx.1_RNA	NM_017861	NP_060331	Q8TBF5	PIGX_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	63	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;1.08e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00322)		ACCTTTTAATCAAAGTGAAGT	0.373													28	96					0	0	0.00127121	0	0
BDH1	622	broad.mit.edu	37	3	197238901	197238901	+	Silent	SNP	G	A	A	rs116643903	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr3:197238901G>A	uc003fxr.2	-	8	1299	c.897C>T	c.(895-897)ATC>ATT	p.I299I	BDH1_uc003fxs.2_Silent_p.I299I|BDH1_uc003fxt.2_Silent_p.I212I|BDH1_uc003fxu.2_Silent_p.I299I	NM_203314	NP_976059	Q02338	BDH_HUMAN	3-hydroxybutyrate dehydrogenase, type 1	299					cellular lipid metabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	3-hydroxybutyrate dehydrogenase activity			ovary(1)	1	all_cancers(143;3.35e-10)|Ovarian(172;0.0418)|Breast(254;0.0437)	Lung NSC(153;0.118)	Epithelial(36;3.52e-24)|all cancers(36;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-19)|LUSC - Lung squamous cell carcinoma(58;1.02e-06)|Lung(62;1.34e-06)	GBM - Glioblastoma multiforme(93;0.0977)	NADH(DB00157)	TGACAGCATCGATGACAGGGG	0.572													67	126					0	0	0.000781405	0	0
GAK	2580	broad.mit.edu	37	4	887176	887176	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:887176G>A	uc003gbm.3	-	9	1178	c.979C>T	c.(979-981)CCC>TCC	p.P327S	GAK_uc003gbn.3_Missense_Mutation_p.P248S|GAK_uc010ibk.1_Missense_Mutation_p.P221S|GAK_uc003gbl.3_Missense_Mutation_p.P191S	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	327					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		TCTGTGATGGGAGACTTGGGG	0.672													8	30					0	0	0.000274275	0	0
HTT	3064	broad.mit.edu	37	4	3176451	3176451	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:3176451G>C	uc011bvq.1	+	33	4321	c.4176G>C	c.(4174-4176)TGG>TGC	p.W1392C		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1390					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TTGGCAGATGGTTTGATGTCC	0.418													15	74					0	0	0.000308642	0	0
RGS12	6002	broad.mit.edu	37	4	3319322	3319322	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:3319322C>T	uc003ggw.2	+	2	2329	c.1425C>T	c.(1423-1425)CCC>CCT	p.P475P	RGS12_uc003ggu.2_Silent_p.P475P|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Silent_p.P475P|RGS12_uc003ggx.1_Silent_p.P475P	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	475						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GGACTGGGCCCTTCTGTCCGG	0.682													15	80					0	0	0.000308642	0	0
HGFAC	3083	broad.mit.edu	37	4	3445868	3445869	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:3445868_3445869CC>TT	uc003ghc.2	+	5	581_582	c.578_579CC>TT	c.(577-579)ACC>ATT	p.T193I	HGFAC_uc010icw.2_Missense_Mutation_p.T193I	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	193	EGF-like 1.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CGGGCCTTCACCGGCAAGGACT	0.693													4	6					0	0	6.4e-05	0	0
MSX1	4487	broad.mit.edu	37	4	4864760	4864760	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:4864760G>A	uc003gif.2	+	2	1037	c.802G>A	c.(802-804)GGT>AGT	p.G268S		NM_002448	NP_002439	P28360	MSX1_HUMAN	msh homeobox 1	262	Poly-Ala.				apoptotic nuclear change|face morphogenesis|negative regulation of cell growth|odontogenesis of dentine-containing tooth|positive regulation of apoptosis|protein localization to nucleus|protein stabilization	nucleus	p53 binding|sequence-specific DNA binding transcription factor activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GGCCGCGGCGGGTGCCTCGCT	0.706													11	23					0	0	0.000673444	0	0
TBC1D14	57533	broad.mit.edu	37	4	7026734	7026734	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:7026734C>T	uc011bwg.1	+	13	1840	c.1761C>T	c.(1759-1761)ATC>ATT	p.I587I	TBC1D14_uc003gjs.3_Silent_p.I587I|TBC1D14_uc010idh.2_Silent_p.I307I|TBC1D14_uc011bwh.1_Silent_p.I234I|TBC1D14_uc003gju.3_Silent_p.I78I	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	587	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						CCCCTAGGATCTTTACCTTAT	0.463													43	150					0	0	0.000781405	0	0
ACOX3	8310	broad.mit.edu	37	4	8401339	8401339	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:8401339G>A	uc010idk.2	-	8	962	c.817C>T	c.(817-819)CTT>TTT	p.L273F	ACOX3_uc003glc.3_Missense_Mutation_p.L273F|ACOX3_uc003gld.3_Missense_Mutation_p.L273F|ACOX3_uc003gle.1_Missense_Mutation_p.L178F	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	273					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						CGGTTCAGAAGGCTCTGGCGA	0.602													6	71					0	0	0.000157383	0	0
GPR78	27201	broad.mit.edu	37	4	8588947	8588947	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:8588947C>T	uc003glk.2	+	3	1368	c.949C>T	c.(949-951)CCG>TCG	p.P317S	CPZ_uc003gll.2_Intron	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	317	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						GAAGAGAACCCCGCGCCCAGC	0.672													12	62					0	0	0.00136819	0	0
MIR548I2	100302277	broad.mit.edu	37	4	9557802	9557802	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:9557802G>A	hsa-mir-548i-2|MI0006422	-			c.136G>A																				0						GATGGATCAGGGACGAACTTT	0.269													18	128					0	0	0.00074312	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15444303	15444303	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:15444303C>T	uc011bxb.1	+	3	977	c.750C>T	c.(748-750)TTC>TTT	p.F250F	C1QTNF7_uc003gno.2_Silent_p.F257F|C1QTNF7_uc003gnp.2_Silent_p.F250F	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	250	C1q.					collagen					0						TGGAGATTTTCTTCACAGACC	0.483													13	75					0	0	0.00244969	0	0
SLIT2	9353	broad.mit.edu	37	4	20521064	20521064	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:20521064C>T	uc003gpr.1	+	12	1322	c.1118C>T	c.(1117-1119)TCC>TTC	p.S373F	SLIT2_uc003gps.1_Missense_Mutation_p.S373F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	373	LRR 10.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GGACTGTTTTCCTTACAGCTC	0.308													18	62					0	0	0.00152264	0	0
SLIT2	9353	broad.mit.edu	37	4	20620397	20620397	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:20620397C>T	uc003gpr.1	+	37	4559	c.4355C>T	c.(4354-4356)TCT>TTT	p.S1452F	SLIT2_uc003gps.1_Missense_Mutation_p.S1444F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1452					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CTAGAAATCTCTTGTCGAGGG	0.428													16	57					0	0	0.000958276	0	0
SLC34A2	10568	broad.mit.edu	37	4	25671398	25671398	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:25671398G>A	uc003grr.2	+	7	846	c.765G>A	c.(763-765)AAG>AAA	p.K255K	SLC34A2_uc003grs.2_Silent_p.K254K|SLC34A2_uc010iev.2_Silent_p.K254K	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	255	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TCCACTTCAAGAATGGAGAAG	0.493													30	142					0	0	0.00178596	0	0
SLC34A2	10568	broad.mit.edu	37	4	25678030	25678030	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:25678030C>T	uc003grr.2	+	13	1813	c.1732C>T	c.(1732-1734)CGC>TGC	p.R578C	SLC34A2_uc003grs.2_Missense_Mutation_p.R577C|SLC34A2_uc010iev.2_Missense_Mutation_p.R577C	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	578	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				CCTGCAGTCTCGCTGCCCACG	0.627													28	103					0	0	0.000953801	0	0
SEL1L3	23231	broad.mit.edu	37	4	25780821	25780821	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:25780821A>T	uc003gru.3	-	16	2614	c.2462T>A	c.(2461-2463)TTA>TAA	p.L821*	SEL1L3_uc003grv.2_Nonsense_Mutation_p.L228*	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	821	Sel1-like 6.					integral to membrane	binding				0						TTCACCAGCTAAAGTCTGTAA	0.463													9	53					0	0	0.000673444	0	0
PCDH7	5099	broad.mit.edu	37	4	31144234	31144234	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:31144234C>T	uc011bxx.1	+	3	4515	c.3507C>T	c.(3505-3507)TTC>TTT	p.F1169F	PCDH7_uc011bxw.1_Silent_p.F1122F	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	Error:Variant_position_missing_in_O60245_after_alignment					homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						TGTCCACTTTCATGCCTGTTG	0.547													15	65					0	0	0.00074312	0	0
TLR6	10333	broad.mit.edu	37	4	38829376	38829376	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:38829376C>T	uc003gtm.2	-	1	1785	c.1719G>A	c.(1717-1719)AAG>AAA	p.K573K	TLR6_uc010ifg.1_Silent_p.K573K	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	573	LRRCT.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						TGTGAAAGTCCTTTAGTGGGC	0.453													14	63					0	0	0.000308642	0	0
FAM114A1	92689	broad.mit.edu	37	4	38942609	38942609	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:38942609C>T	uc003gtn.2	+	14	1733	c.1557C>T	c.(1555-1557)GTC>GTT	p.V519V	FAM114A1_uc011byh.1_Silent_p.V312V|FAM114A1_uc010ifi.2_Silent_p.V177V	NM_138389	NP_612398	Q8IWE2	NXP20_HUMAN	hypothetical protein LOC92689	519						cytoplasm				ovary(1)	1						AGGCCGAGGTCCTTAACCCCA	0.388													13	55					0	0	0.000566183	0	0
KLB	152831	broad.mit.edu	37	4	39408668	39408668	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:39408668G>A	uc003gua.2	+	1	196	c.99G>A	c.(97-99)GGG>GGA	p.G33G	KLB_uc011byj.1_Silent_p.G33G	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	33	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						TGTCCAACGGGGGATTGCAAA	0.438													9	46					0	0	0.000274275	0	0
UBE2K	3093	broad.mit.edu	37	4	39739052	39739052	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:39739052C>T	uc003guu.3	+	2	360	c.76C>T	c.(76-78)CAA>TAA	p.Q26*	UBE2K_uc003gus.3_Nonsense_Mutation_p.Q26*|UBE2K_uc003gut.3_Intron|UBE2K_uc010ifn.2_Intron|UBE2K_uc011byq.1_Nonsense_Mutation_p.Q26*|UBE2K_uc003guq.3_5'UTR	NM_005339	NP_005330	P61086	UBE2K_HUMAN	ubiquitin-conjugating enzyme E2K isoform 1	26					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|ubiquitin protein ligase binding|ubiquitin-ubiquitin ligase activity			ovary(1)	1						GAGCAAAAATCAAATTAAAGT	0.318													12	62					0	0	0.00136819	0	0
RBM47	54502	broad.mit.edu	37	4	40439833	40439833	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:40439833G>A	uc003gvc.2	-	4	1788	c.1078C>T	c.(1078-1080)CCC>TCC	p.P360S	RBM47_uc003gvd.2_Missense_Mutation_p.P360S|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.P322S|RBM47_uc003gvg.1_Missense_Mutation_p.P360S	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	360						nucleus	nucleotide binding|RNA binding			breast(3)	3						GCGTTGTAGGGGTAGCCGTAG	0.637													6	27					0	0	0.00116845	0	0
LIMCH1	22998	broad.mit.edu	37	4	41607998	41607998	+	Missense_Mutation	SNP	G	A	A	rs146838350		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:41607998G>A	uc003gvu.3	+	6	517	c.463G>A	c.(463-465)GGA>AGA	p.G155R	LIMCH1_uc003gvt.1_5'UTR|LIMCH1_uc003gvv.3_Missense_Mutation_p.G155R|LIMCH1_uc003gvw.3_Missense_Mutation_p.G155R|LIMCH1_uc003gvx.3_Missense_Mutation_p.G155R|LIMCH1_uc003gwe.3_Missense_Mutation_p.G155R|LIMCH1_uc003gvy.3_5'UTR|LIMCH1_uc003gwa.3_5'UTR|LIMCH1_uc003gvz.3_5'UTR	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	155					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GGAGTTTGAAGGATTGTTGGC	0.418													14	35					0	0	0.000566183	0	0
PHOX2B	8929	broad.mit.edu	37	4	41747901	41747901	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:41747901G>A	uc003gwf.3	-	3	1228	c.868C>T	c.(868-870)CCC>TCC	p.P290S		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	290					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						CTGGCGAAGGGACCCCCAAGC	0.562			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				21	71					0	0	0.000720815	0	0
SLC30A9	10463	broad.mit.edu	37	4	42080259	42080259	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:42080259C>T	uc003gwl.2	+	17	1725	c.1579C>T	c.(1579-1581)CTA>TTA	p.L527L	SLC30A9_uc011byx.1_Silent_p.L287L	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	527					nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						TCCTGAAGAACTAGAGACCTT	0.294													23	101					0	0	0.00047179	0	0
NFXL1	152518	broad.mit.edu	37	4	47901422	47901422	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:47901422G>A	uc010igh.2	-	6	968	c.791C>T	c.(790-792)CCT>CTT	p.P264L	NFXL1_uc003gxp.2_Missense_Mutation_p.P264L|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.P264L	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	264						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						ATGGCCACAAGGAGGTTTAAA	0.378													16	41					0	0	0.00121646	0	0
CNGA1	1259	broad.mit.edu	37	4	47939399	47939399	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:47939399C>T	uc003gxt.3	-	11	1378	c.1112G>A	c.(1111-1113)AGG>AAG	p.R371K	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.R440K	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	371	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						CTCAGAATCCCTCACGGGAGG	0.408													26	107					0	0	0.001512	0	0
SLAIN2	57606	broad.mit.edu	37	4	48422161	48422161	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:48422161C>T	uc003gya.3	+	7	1524	c.1380C>T	c.(1378-1380)TTC>TTT	p.F460F		NM_020846	NP_065897	Q9P270	SLAI2_HUMAN	SLAIN motif family, member 2	460						centrosome					0						CAGGCAAATTCCGTTCCCCTG	0.428													5	41					0	0	0.00198382	0	0
CEP135	9662	broad.mit.edu	37	4	56883940	56883940	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:56883940C>T	uc003hbi.2	+	22	3163	c.2929C>T	c.(2929-2931)CTT>TTT	p.L977F	CEP135_uc003hbj.2_Missense_Mutation_p.L683F	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	977	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					CTTGTCATCTCTTAGAGAACT	0.358													17	35					0	0	0.00074312	0	0
REST	5978	broad.mit.edu	37	4	57797279	57797279	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:57797279C>T	uc003hch.2	+	4	2602	c.2255C>T	c.(2254-2256)CCC>CTC	p.P752L	REST_uc003hci.2_Missense_Mutation_p.P752L|REST_uc010ihf.2_Missense_Mutation_p.P426L	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	752	Pro-rich.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding	p.P752T(2)		skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					CTGTCTCCTCCCATGGAGGTG	0.557													49	250					0	0	0.000781405	0	0
TECRL	253017	broad.mit.edu	37	4	65274970	65274970	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:65274970G>A	uc003hcv.2	-	1	209	c.100C>T	c.(100-102)CAC>TAC	p.H34Y	TECRL_uc003hcw.2_Missense_Mutation_p.H34Y	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	34					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						GACAAAAAGTGAAAATTTCTC	0.413													16	71					0	0	0.000566183	0	0
YTHDC1	91746	broad.mit.edu	37	4	69202762	69202762	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:69202762G>A	uc003hdx.2	-	4	1219	c.866C>T	c.(865-867)TCA>TTA	p.S289L	YTHDC1_uc003hdy.2_Missense_Mutation_p.S289L	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	289										upper_aerodigestive_tract(1)|ovary(1)	2						ATCTGTGCCTGAACCAGATCT	0.373													10	63					0	0	0.00185496	0	0
Unknown	0	broad.mit.edu	37	4	69343208	69343208	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:69343208G>A	uc003hdz.3	+	8	893	c.829G>A	c.(829-831)GAT>AAT	p.D277N		NM_014058	NP_054777			transmembrane protease, serine 11E																		ACATGACTATGATATTTCTCT	0.413													32	138					0	0	0.000814825	0	0
UGT2B28	54490	broad.mit.edu	37	4	70156375	70156375	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:70156375C>T	uc003hej.2	+	5	1158	c.1156C>T	c.(1156-1158)CAT>TAT	p.H386Y	UGT2B28_uc010ihr.2_Intron	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	386					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GGCAATCTACCATGGGATCCC	0.428													9	36					0	0	0.000978159	0	0
UGT2B4	7363	broad.mit.edu	37	4	70359453	70359453	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:70359453G>A	uc003hek.3	-	2	875	c.828C>T	c.(826-828)TTC>TTT	p.F276F	UGT2B4_uc011cap.1_Silent_p.F140F|UGT2B4_uc003hel.3_Silent_p.F276F	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	276					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						GTCCTCCAACGAACTCAACAT	0.413													13	49					0	0	0.000308642	0	0
SLC4A4	8671	broad.mit.edu	37	4	72317009	72317009	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:72317009G>A	uc003hfy.2	+	11	1430	c.1313G>A	c.(1312-1314)CGA>CAA	p.R438Q	SLC4A4_uc010iic.2_Missense_Mutation_p.R438Q|SLC4A4_uc010iib.2_Missense_Mutation_p.R438Q|SLC4A4_uc003hfz.2_Missense_Mutation_p.R438Q|SLC4A4_uc003hgc.3_Missense_Mutation_p.R394Q|SLC4A4_uc010iid.2_Intron|SLC4A4_uc003hga.2_Missense_Mutation_p.R316Q|SLC4A4_uc003hgb.3_Missense_Mutation_p.R394Q	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	438	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			GAATTGCAGCGAACTGGACGG	0.428													12	28					0	0	0.00185496	0	0
PPEF2	5470	broad.mit.edu	37	4	76804159	76804159	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:76804159C>T	uc003hix.2	-	10	1210	c.853G>A	c.(853-855)GAT>AAT	p.D285N	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.D285N	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	285	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ACTTTCTCATCTATCAGAGTG	0.388													15	59					0	0	0.00244969	0	0
PPEF2	5470	broad.mit.edu	37	4	76812837	76812837	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:76812837G>A	uc003hix.2	-	4	562	c.205C>T	c.(205-207)CTC>TTC	p.L69F	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.L69F	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	69					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TGATCCATGAGATAGCTGAAG	0.507													43	191					0	0	0.000781405	0	0
FRAS1	80144	broad.mit.edu	37	4	79458181	79458181	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:79458181C>T	uc003hlb.2	+	72	11565	c.11125C>T	c.(11125-11127)CCA>TCA	p.P3709S		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3704	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ACTTTGGAATCCAGAACAAAA	0.393													17	91					0	0	0.00121646	0	0
BMP3	651	broad.mit.edu	37	4	81966905	81966905	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:81966905A>T	uc003hmg.3	+	2	650	c.330A>T	c.(328-330)AGA>AGT	p.R110S		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	110					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						CTCTTGAAAGAAAAGGACTGT	0.289													7	47					0	0	0.000442599	0	0
PRKG2	5593	broad.mit.edu	37	4	82064053	82064053	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:82064053C>T	uc003hmh.2	-	10	1316	c.1302G>A	c.(1300-1302)ATG>ATA	p.M434I	PRKG2_uc011ccf.1_Missense_Mutation_p.M14I|PRKG2_uc011ccg.1_Missense_Mutation_p.M14I|PRKG2_uc011cch.1_Missense_Mutation_p.M434I	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	434					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TCAGCTGAATCATTTCCAGAG	0.468													18	72					0	0	0.000566183	0	0
PRKG2	5593	broad.mit.edu	37	4	82125861	82125861	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:82125861G>A	uc003hmh.2	-	1	355	c.341C>T	c.(340-342)TCT>TTT	p.S114F	PRKG2_uc011cch.1_Missense_Mutation_p.S114F	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	114					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						GCTATGGAGAGAGACCAATCC	0.547													18	102					0	0	0.000566183	0	0
SCD5	79966	broad.mit.edu	37	4	83601881	83601881	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:83601881G>A	uc003hna.2	-	3	868	c.548C>T	c.(547-549)CCT>CTT	p.P183L	SCD5_uc003hnb.3_Missense_Mutation_p.P183L	NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	183					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				CCGGACCACAGGATCAGCAAG	0.512													5	43					0	0	0.00116845	0	0
ABCG2	9429	broad.mit.edu	37	4	89039317	89039317	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:89039317C>T	uc003hrg.2	-	7	1278	c.785G>A	c.(784-786)GGA>GAA	p.G262E	ABCG2_uc003hrh.2_Missense_Mutation_p.G262E|ABCG2_uc003hrf.2_Missense_Mutation_p.G132E	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	262	ABC transporter.|Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	CATAAGTCTTCCTGAGGCCAA	0.428													6	25					0	0	0.00198382	0	0
HERC3	8916	broad.mit.edu	37	4	89599133	89599133	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:89599133A>C	uc003hrw.1	+	19	2210	c.2044A>C	c.(2044-2046)AAC>CAC	p.N682H	HERC3_uc011cdn.1_Missense_Mutation_p.N564H|HERC3_uc011cdo.1_Missense_Mutation_p.N126H	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	682					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		CAATGGAGCCAACCTGCAGAA	0.542													10	49					0	0	0.000978159	0	0
FAM13A	10144	broad.mit.edu	37	4	89671688	89671688	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:89671688G>T	uc003hse.1	-	15	2035	c.1827C>A	c.(1825-1827)GAC>GAA	p.D609E	FAM13A_uc003hsa.1_Missense_Mutation_p.D80E|FAM13A_uc003hsb.1_Missense_Mutation_p.D283E|FAM13A_uc003hsd.1_Missense_Mutation_p.D283E|FAM13A_uc003hsc.1_Missense_Mutation_p.D269E|FAM13A_uc011cdq.1_Missense_Mutation_p.D255E|FAM13A_uc003hsf.1_Missense_Mutation_p.D195E|FAM13A_uc003hsg.1_Missense_Mutation_p.D80E|FAM13A_uc010ikr.1_Missense_Mutation_p.D105E	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	609					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						CGCTGTCTTCGTCCAGCAGCT	0.602													12	60					2.27111e-07	8.02622e-07	0.00136819	1	0
MMRN1	22915	broad.mit.edu	37	4	90844324	90844324	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:90844324G>A	uc003hst.2	+	4	927	c.856G>A	c.(856-858)GAA>AAA	p.E286K	MMRN1_uc010iku.2_Missense_Mutation_p.E252K|MMRN1_uc011cds.1_Missense_Mutation_p.E28K	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	286					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		TCTAGCCCAGGAACAGCAAAG	0.483													17	74					0	0	0.000566183	0	0
UNC5C	8633	broad.mit.edu	37	4	96137323	96137323	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:96137323C>T	uc003htp.1	-	10	1839	c.1685G>A	c.(1684-1686)GGG>GAG	p.G562E	UNC5C_uc010ilc.1_Missense_Mutation_p.G581E|UNC5C_uc003htq.2_Missense_Mutation_p.G581E	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	562	Cytoplasmic (Potential).|ZU5.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		GTAGACTCTCCCTTGGGGAAT	0.433													8	32					0	0	0.000978159	0	0
ADH1B	125	broad.mit.edu	37	4	100237121	100237121	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:100237121C>T	uc003hus.3	-	5	585	c.501G>A	c.(499-501)CTG>CTA	p.L167L	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.L127L|ADH1B_uc011ceh.1_Silent_p.L12L|ADH1B_uc011cei.1_Silent_p.L127L	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	167					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	AGACTTTCTCCAGGGGCGAGG	0.522													13	73					0	0	0.00244969	0	0
MTTP	4547	broad.mit.edu	37	4	100534201	100534201	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:100534201C>T	uc003hvc.3	+	16	2377	c.2121C>T	c.(2119-2121)TTC>TTT	p.F707F	MTTP_uc011cej.1_Silent_p.F734F	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	707					lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TCACCTTTTTCAACGGATACA	0.473													11	51					0	0	0.00136819	0	0
RRH	10692	broad.mit.edu	37	4	110763678	110763678	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:110763678C>T	uc003hzv.2	+	6	808	c.774C>T	c.(772-774)ATC>ATT	p.I258I		NM_006583	NP_006574	O14718	OPSX_HUMAN	peropsin	258	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00109)		CTTATTCCATCGTGTGCTTAT	0.413													16	65					0	0	0.000566183	0	0
ENPEP	2028	broad.mit.edu	37	4	111397964	111397964	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:111397964C>T	uc003iab.3	+	1	736	c.394C>T	c.(394-396)CTG>TTG	p.L132L		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	132	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CACCCGGTACCTGTGGCTGCA	0.627													20	77					0	0	0.00121646	0	0
ALPK1	80216	broad.mit.edu	37	4	113347634	113347634	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:113347634G>A	uc003iap.3	+	8	913	c.634G>A	c.(634-636)GAA>AAA	p.E212K	ALPK1_uc003ian.3_Missense_Mutation_p.E212K|ALPK1_uc011cfx.1_Missense_Mutation_p.E134K|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_Missense_Mutation_p.E40K	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	212							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		GATGTGGTACGAAGCAGCAGA	0.448													20	78					0	0	0.00047179	0	0
PRSS12	8492	broad.mit.edu	37	4	119203159	119203159	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:119203159C>T	uc003ica.1	-	13	2607	c.2560G>A	c.(2560-2562)GAT>AAT	p.D854N		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	854	Peptidase S1.					membrane	scavenger receptor activity			skin(1)	1						CCAGGAGAATCCTTGACTCCA	0.498													8	68					0	0	0.000157383	0	0
MYOZ2	51778	broad.mit.edu	37	4	120085440	120085440	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:120085440C>T	uc003icp.3	+	5	664	c.451C>T	c.(451-453)CCC>TCC	p.P151S		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	151							protein phosphatase 2B binding				0						CTATCAATCTCCCTGGGAACA	0.413													6	27					0	0	0.000157383	0	0
TRPC3	7222	broad.mit.edu	37	4	122846228	122846228	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:122846228C>T	uc003ieg.2	-	3	1195	c.1121G>A	c.(1120-1122)AGG>AAG	p.R374K	TRPC3_uc010inr.2_Missense_Mutation_p.R301K|TRPC3_uc003ief.2_Missense_Mutation_p.R301K|TRPC3_uc011cgl.1_Missense_Mutation_p.R38K	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	289	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						AGCTTTGTGCCTGTGTACCTC	0.448													40	143					0	0	0.000781405	0	0
KIAA1109	84162	broad.mit.edu	37	4	123141522	123141522	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:123141522C>T	uc003ieh.2	+	20	2555	c.2510C>T	c.(2509-2511)GCT>GTT	p.A837V	KIAA1109_uc003iei.1_Missense_Mutation_p.A591V|KIAA1109_uc010ins.1_Missense_Mutation_p.A181V|KIAA1109_uc003iej.1_Missense_Mutation_p.A222V	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	837					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TGCCCTACAGCTTTCTTGGAA	0.383													8	47					0	0	0.000442599	0	0
KIAA1109	84162	broad.mit.edu	37	4	123269732	123269732	+	Silent	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:123269732A>G	uc003ieh.2	+	75	13185	c.13140A>G	c.(13138-13140)TCA>TCG	p.S4380S	KIAA1109_uc003iem.2_Silent_p.S736S	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4380					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ATTCACTTTCAAAAACATCAA	0.318													6	16					0	0	0.000157383	0	0
FAT4	79633	broad.mit.edu	37	4	126336274	126336274	+	Silent	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:126336274T>G	uc003ifj.3	+	5	6156	c.6156T>G	c.(6154-6156)CTT>CTG	p.L2052L	FAT4_uc011cgp.1_Silent_p.L350L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2052	Cadherin 20.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CGACATTTCTTTCCCCTAAAT	0.413													10	83					0	0	0.000673444	0	0
FAT4	79633	broad.mit.edu	37	4	126411402	126411402	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:126411402G>A	uc003ifj.3	+	17	13425	c.13425G>A	c.(13423-13425)CAG>CAA	p.Q4475Q	FAT4_uc011cgp.1_Silent_p.Q2716Q|FAT4_uc003ifi.1_Silent_p.Q1952Q	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4475	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCTGTCCTCAGGGGAAGGTGT	0.612													17	67					0	0	0.00121646	0	0
FAT4	79633	broad.mit.edu	37	4	126412334	126412334	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:126412334G>A	uc003ifj.3	+	17	14357	c.14357G>A	c.(14356-14358)GGA>GAA	p.G4786E	FAT4_uc011cgp.1_Missense_Mutation_p.G3027E|FAT4_uc003ifi.1_Missense_Mutation_p.G2263E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4786	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCTCCAGTCGGACTTTCTATT	0.532													7	45					0	0	0.00198382	0	0
PCDH18	54510	broad.mit.edu	37	4	138452408	138452408	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:138452408C>T	uc003ihe.3	-	1	1222	c.835G>A	c.(835-837)GGG>AGG	p.G279R	PCDH18_uc003ihf.3_Missense_Mutation_p.G272R|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.G59R|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	279	Cadherin 3.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ACAATTTTCCCATTAGCGCCC	0.388													9	41					0	0	0.000673444	0	0
NAA15	80155	broad.mit.edu	37	4	140306070	140306070	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:140306070C>T	uc003ihu.1	+	18	2496	c.2240C>T	c.(2239-2241)CCA>CTA	p.P747L		NM_057175	NP_476516	Q9BXJ9	NAA15_HUMAN	NMDA receptor regulated 1	747					angiogenesis|cell differentiation|N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	protein binding			ovary(1)|skin(1)	2						GCAACGAATCCAAAGAATTTT	0.294													5	66					0	0	0.00116845	0	0
GYPA	2993	broad.mit.edu	37	4	144918707	144918707	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:144918707G>A	uc003ijn.2	-	5	468	c.352C>T	c.(352-354)CGC>TGC	p.R118C	GYPB_uc011chs.1_Intron|GYPB_uc011cht.1_RNA|GYPB_uc011chu.1_RNA|GYPB_uc010ioo.1_Intron|GYPB_uc010iop.2_RNA|GYPB_uc011chv.1_RNA|GYPB_uc011chw.1_Intron|GYPB_uc011chx.1_RNA|GYPB_uc003ijm.1_Missense_Mutation_p.R86C|GYPB_uc011chy.1_RNA|GYPB_uc011chz.1_RNA			P02724	GLPA_HUMAN	SubName: Full=Glycophorin MiX; Flags: Fragment;	115	Cytoplasmic.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					ATCAGTCGGCGAATACTGTAA	0.368													10	46					0	0	0.000978159	0	0
PRSS48	345062	broad.mit.edu	37	4	152200991	152200991	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:152200991G>A	uc011cif.1	+	2	96	c.96G>A	c.(94-96)CAG>CAA	p.Q32Q	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	32	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						TAGGTGGCCAGGATGCTGCTG	0.532													7	45					0	0	0.00198382	0	0
PDGFC	56034	broad.mit.edu	37	4	157689065	157689065	+	Missense_Mutation	SNP	C	T	T	rs141820181		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:157689065C>T	uc003iph.1	-	5	1272	c.781G>A	c.(781-783)GAA>AAA	p.E261K	PDGFC_uc003ipi.1_Missense_Mutation_p.E98K|PDGFC_uc011cis.1_Missense_Mutation_p.E98K|PDGFC_uc011cir.1_Missense_Mutation_p.E105K	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	261					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity	p.E261K(1)		ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TTTAGTTCTTCCCTTATGGAC	0.438													12	56					0	0	0.00136819	0	0
RXFP1	59350	broad.mit.edu	37	4	159520547	159520547	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:159520547G>A	uc003ipz.2	+	4	438	c.356G>A	c.(355-357)CGA>CAA	p.R119Q	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_Missense_Mutation_p.R38Q|RXFP1_uc010iqo.2_Missense_Mutation_p.R119Q|RXFP1_uc011cjb.1_Missense_Mutation_p.R65Q|RXFP1_uc010iqk.2_5'UTR|RXFP1_uc011cjc.1_Missense_Mutation_p.R38Q|RXFP1_uc011cjd.1_Missense_Mutation_p.R38Q|RXFP1_uc010iql.2_5'UTR|RXFP1_uc011cje.1_Missense_Mutation_p.R146Q|RXFP1_uc010iqm.2_Missense_Mutation_p.R86Q|RXFP1_uc011cjf.1_5'UTR|RXFP1_uc010iqn.2_Missense_Mutation_p.R65Q	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	119	Extracellular (Potential).|LRRNT.					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		ACCAATTTACGAGCTGTTCCA	0.423													7	34					0	0	0.000442599	0	0
NPY1R	4886	broad.mit.edu	37	4	164246712	164246712	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:164246712G>A	uc003iqm.1	-	3	1164	c.898C>T	c.(898-900)CTG>TTG	p.L300L	NPY1R_uc011cjj.1_Silent_p.L57L	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	300	Helical; Name=7; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AGGAATAACAGATTGTGGTTG	0.438													12	39					0	0	0.00244969	0	0
NPY5R	4889	broad.mit.edu	37	4	164272660	164272660	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:164272660T>A	uc003iqn.2	+	4	1417	c.1235T>A	c.(1234-1236)TTG>TAG	p.L412*		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	412	Helical; Name=7; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				ATTTGTCATTTGTTGGGCATG	0.348													23	126					0	0	0.00278032	0	0
TKTL2	84076	broad.mit.edu	37	4	164394129	164394129	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:164394129G>A	uc003iqp.3	-	1	919	c.758C>T	c.(757-759)CCA>CTA	p.P253L		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	253						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CTCAATATTTGGAATACCCCG	0.433													27	175					0	0	0.00127121	0	0
TRIM60	166655	broad.mit.edu	37	4	165962219	165962219	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:165962219G>A	uc003iqy.1	+	3	1165	c.995G>A	c.(994-996)AGA>AAA	p.R332K	TRIM60_uc010iqx.1_Missense_Mutation_p.R332K	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	332	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		GACCCAAGGAGATTTTATGTC	0.418													25	114					0	0	0.000720815	0	0
TLL1	7092	broad.mit.edu	37	4	166924569	166924569	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:166924569G>A	uc003irh.1	+	6	1306	c.659G>A	c.(658-660)GGA>GAA	p.G220E	TLL1_uc011cjn.1_Missense_Mutation_p.G220E|TLL1_uc011cjo.1_Missense_Mutation_p.G44E	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	220	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GGTCGGCGAGGAAATGGACCT	0.438													8	49					0	0	0.000157383	0	0
ANXA10	11199	broad.mit.edu	37	4	169098892	169098892	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:169098892G>A	uc003irm.2	+	7	627	c.482G>A	c.(481-483)GGG>GAG	p.G161E	ANXA10_uc003irn.2_Missense_Mutation_p.G33E	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	161							calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		ACTTTACAGGGGACCAGAGAG	0.423													10	42					0	0	0.00136819	0	0
DDX60L	91351	broad.mit.edu	37	4	169336629	169336629	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:169336629A>T	uc003irq.3	-	22	3130	c.2909T>A	c.(2908-2910)ATA>AAA	p.I970K	DDX60L_uc003irr.1_Missense_Mutation_p.I970K|DDX60L_uc003irs.1_Missense_Mutation_p.I665K	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	970							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TACTGAACATATATGCTTCTC	0.323													9	29					0	0	0.000274275	0	0
MORF4	10934	broad.mit.edu	37	4	174537113	174537113	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:174537113G>A	uc011cke.1	-	1	682	c.682C>T	c.(682-684)CCT>TCT	p.P228S		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TGGTACTCAGGAAGAGCCACT	0.408													7	30					0	0	0.000274275	0	0
MORF4	10934	broad.mit.edu	37	4	174537506	174537506	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:174537506G>A	uc011cke.1	-	1	289	c.289C>T	c.(289-291)CCT>TCT	p.P97S		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TTCTCGGCAGGAAGATAGAAG	0.378													37	160					0	0	0.00128727	0	0
MORF4	10934	broad.mit.edu	37	4	174537631	174537631	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:174537631G>A	uc011cke.1	-	1	164	c.164C>T	c.(163-165)ACT>ATT	p.T55I		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		ATTTTCAACAGTAGGATCTAC	0.423													12	53					0	0	0.000978159	0	0
GLRA3	8001	broad.mit.edu	37	4	175580240	175580240	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:175580240C>G	uc003ity.1	-	8	1539	c.1036G>C	c.(1036-1038)GAA>CAA	p.E346Q	GLRA3_uc003itz.1_Missense_Mutation_p.E346Q	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	346	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	CTCAGAAGTTCTTTGTGTTGT	0.363													6	66					0	0	0.00116845	0	0
SPATA4	132851	broad.mit.edu	37	4	177109326	177109326	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:177109326G>A	uc003iuo.1	-	5	858	c.749C>T	c.(748-750)GCC>GTC	p.A250V		NM_144644	NP_653245	Q8NEY3	SPAT4_HUMAN	spermatogenesis associated 4	250					apoptosis|spermatogenesis						0		Breast(14;0.0011)|Prostate(90;0.0129)|Melanoma(52;0.0133)|Renal(120;0.0376)|all_hematologic(60;0.124)		all cancers(43;2.9e-20)|Epithelial(43;1.99e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.58e-09)|GBM - Glioblastoma multiforme(59;0.000162)|STAD - Stomach adenocarcinoma(60;0.000543)|LUSC - Lung squamous cell carcinoma(193;0.096)		GCGCCCAGAGGCTTGGGCAGG	0.338													7	76					0	0	0.000442599	0	0
LOC285501	285501	broad.mit.edu	37	4	178881980	178881980	+	RNA	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:178881980G>C	uc010iru.2	+	3		c.443G>C				NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		TTTCTTTCCGGGGATCAAAAG	0.343													3	52					0	0	0.00024832	0	0
ODZ3	55714	broad.mit.edu	37	4	183522226	183522226	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:183522226G>A	uc003ivd.1	+	3	698	c.661G>A	c.(661-663)GCT>ACT	p.A221T		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	221	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CCCGCCGGCTGCTTTGCCCGC	0.552													27	120					0	0	0.000878237	0	0
ACSL1	2180	broad.mit.edu	37	4	185724548	185724548	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:185724548T>G	uc003iww.2	-	2	415	c.121A>C	c.(121-123)ACC>CCC	p.T41P	ACSL1_uc011ckm.1_5'UTR|ACSL1_uc003iwt.1_Missense_Mutation_p.T41P|ACSL1_uc003iwu.1_Missense_Mutation_p.T41P|ACSL1_uc011ckn.1_Missense_Mutation_p.T41P|ACSL1_uc003iwv.1_Missense_Mutation_p.T41P	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1	41	Helical; Signal-anchor for type III membrane protein; (Potential).				digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	TACCAGAAGGTGGTGAGTGCT	0.592													5	19					0	0	0.00116845	0	0
MTNR1A	4543	broad.mit.edu	37	4	187454939	187454939	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:187454939G>A	uc003izd.1	-	2	975	c.957C>T	c.(955-957)TTC>TTT	p.F319F		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	319	Cytoplasmic (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	TGTCCACAAAGAACACCCTGG	0.438													18	93					0	0	0.000958276	0	0
TRIML2	205860	broad.mit.edu	37	4	189012597	189012597	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:189012597C>T	uc003izl.2	-	7	1130	c.1094G>A	c.(1093-1095)GGA>GAA	p.G365E	TRIML2_uc003izj.1_Missense_Mutation_p.G193E|TRIML2_uc003izk.1_Missense_Mutation_p.G173E|TRIML2_uc011cle.1_Missense_Mutation_p.G440E	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	365	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		ACTTGTGTCTCCATTTGGGAT	0.463													21	74					0	0	0.000720815	0	0
TRIML2	205860	broad.mit.edu	37	4	189012810	189012810	+	Missense_Mutation	SNP	G	A	A	rs141991055	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:189012810G>A	uc003izl.2	-	7	917	c.881C>T	c.(880-882)TCG>TTG	p.S294L	TRIML2_uc003izj.1_Missense_Mutation_p.S122L|TRIML2_uc003izk.1_Missense_Mutation_p.S102L|TRIML2_uc011cle.1_Missense_Mutation_p.S369L	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	294	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CCCCATCACCGACCCCGTGAG	0.572													36	127					0	0	0.00128727	0	0
TRIML1	339976	broad.mit.edu	37	4	189068239	189068239	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:189068239G>A	uc003izm.1	+	6	1235	c.1120G>A	c.(1120-1122)GAC>AAC	p.D374N	TRIML1_uc003izn.1_Missense_Mutation_p.D98N	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	374	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCCACCTGGGGACCTGTTCTC	0.522													17	71					0	0	0.000958276	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190904370	190904370	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr4:190904370C>T	uc011clg.1	-	4	613	c.610G>A	c.(610-612)GAA>AAA	p.E204K		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	205					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		TATAGCGCTTCGTTATCTATG	0.537													9	54					0	0	0.00136819	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	145013	145013	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:145013C>G	uc003jak.2	+	4	865	c.815C>G	c.(814-816)TCC>TGC	p.S272C		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	272					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CCTGCCGTCTCCCAGGCCCTC	0.622													9	39					0	0	0.000673444	0	0
BRD9	65980	broad.mit.edu	37	5	878531	878531	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:878531C>G	uc003jbq.2	-	11	1377	c.1210G>C	c.(1210-1212)GAC>CAC	p.D404H	BRD9_uc003jbl.2_Missense_Mutation_p.D288H|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Missense_Mutation_p.D351H|BRD9_uc003jbo.2_Missense_Mutation_p.D308H|BRD9_uc003jbp.2_Missense_Mutation_p.D65H|BRD9_uc011cmc.1_RNA	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	404							nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			TCCATCTCGTCCGACTTCAAG	0.572													3	96					0	0	0.00024832	0	0
SLC6A3	6531	broad.mit.edu	37	5	1406321	1406321	+	Silent	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:1406321G>C	uc003jck.2	-	12	1702	c.1581C>G	c.(1579-1581)GTC>GTG	p.V527V		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	527	Helical; Name=11; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AGCAGGGGCTGACCAGCTTCC	0.682													16	63					0	0	0.000566183	0	0
SRD5A1	6715	broad.mit.edu	37	5	6652106	6652106	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:6652106C>T	uc003jdw.2	+	2	635	c.445C>T	c.(445-447)CCC>TCC	p.P149S	SRD5A1_uc011cml.1_RNA|SRD5A1_uc011cmm.1_Intron	NM_001047	NP_001038	P18405	S5A1_HUMAN	steroid-5-alpha-reductase 1	149					androgen biosynthetic process|cell differentiation|sex determination|sex differentiation	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|electron carrier activity				0					Dutasteride(DB01126)|Finasteride(DB01216)	GGTAACAGATCCCCGTTTTCT	0.443													15	86					0	0	0.000566183	0	0
SEMA5A	9037	broad.mit.edu	37	5	9202111	9202111	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:9202111G>A	uc003jek.2	-	9	1600	c.888C>T	c.(886-888)TTC>TTT	p.F296F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	296	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GCTCAGGCAGGAAGAAAGTAC	0.448													7	28					0	0	0.00198382	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629272	9629272	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:9629272G>A	uc003jem.1	-	1	1192	c.873C>T	c.(871-873)TTC>TTT	p.F291F		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	291	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						TGTGGAGGAGGAACTTTTTTG	0.403													13	53					0	0	0.000308642	0	0
CTNND2	1501	broad.mit.edu	37	5	11082926	11082926	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:11082926T>A	uc003jfa.1	-	16	2815	c.2670A>T	c.(2668-2670)AAA>AAT	p.K890N	CTNND2_uc010itt.2_Missense_Mutation_p.K799N|CTNND2_uc011cmy.1_Missense_Mutation_p.K553N|CTNND2_uc011cmz.1_Missense_Mutation_p.K457N|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.K482N	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	890	ARM 8.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GGCCTTTCTCTTTTCGGACAG	0.542													14	35					0	0	0.000308642	0	0
DNAH5	1767	broad.mit.edu	37	5	13701430	13701430	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:13701430A>T	uc003jfd.2	-	77	13496	c.13454T>A	c.(13453-13455)TTT>TAT	p.F4485Y	DNAH5_uc003jfc.2_Missense_Mutation_p.F653Y	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4485					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGGGTTAAAAAAACCCGTCAT	0.428									Kartagener_syndrome				12	48					0	0	0.00244969	0	0
DNAH5	1767	broad.mit.edu	37	5	13762882	13762882	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:13762882C>T	uc003jfd.2	-	60	10272	c.10230G>A	c.(10228-10230)ACG>ACA	p.T3410T	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3410	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCATAGCTTTCGTCCAGGAAC	0.453									Kartagener_syndrome				16	63					0	0	0.00121646	0	0
DNAH5	1767	broad.mit.edu	37	5	13769652	13769652	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:13769652C>T	uc003jfd.2	-	57	9720	c.9678G>A	c.(9676-9678)GCG>GCA	p.A3226A	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3226	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTTTTCTTTCGCTTCCAGTT	0.433									Kartagener_syndrome				19	119					0	0	0.00188189	0	0
DNAH5	1767	broad.mit.edu	37	5	13850833	13850833	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:13850833C>T	uc003jfd.2	-	31	5084	c.5042G>A	c.(5041-5043)GGA>GAA	p.G1681E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1681	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTCTCATCTCCAACACAGCA	0.478									Kartagener_syndrome				7	37					0	0	0.00198382	0	0
TRIO	7204	broad.mit.edu	37	5	14369570	14369570	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:14369570G>A	uc003jff.2	+	18	3160	c.3154G>A	c.(3154-3156)GAG>AAG	p.E1052K	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.E1003K|TRIO_uc003jfh.1_Missense_Mutation_p.E701K	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1052					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					CCCAAACTCTGAGACGGACCA	0.602													9	57					0	0	0.000442599	0	0
FAM105A	54491	broad.mit.edu	37	5	14608964	14608964	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:14608964C>T	uc003jfj.2	+	7	848	c.735C>T	c.(733-735)TTC>TTT	p.F245F		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	245										ovary(1)	1	Lung NSC(4;0.00592)					CTTTAAAGTTCATCATGCTGT	0.358													7	62					0	0	0.00198382	0	0
MARCH11	441061	broad.mit.edu	37	5	16067614	16067614	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:16067614G>A	uc003jfo.2	-	4	1388	c.1175C>T	c.(1174-1176)TCG>TTG	p.S392L	MARCH11_uc010itw.1_Missense_Mutation_p.S148L	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	392						cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						AACCTCCCCCGAGCTGTTATC	0.463													27	118					0	0	0.00283554	0	0
CDH9	1007	broad.mit.edu	37	5	26885949	26885949	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:26885949C>T	uc003jgs.1	-	11	1825	c.1656G>A	c.(1654-1656)CGG>CGA	p.R552R	CDH9_uc011cnv.1_Silent_p.R145R	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	552	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						AGCCATCTTTCCGAGTCATGA	0.343													9	50					0	0	0.000673444	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576821	33576821	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:33576821C>T	uc003jia.1	-	19	3473	c.3310G>A	c.(3310-3312)GAA>AAA	p.E1104K	ADAMTS12_uc010iuq.1_Missense_Mutation_p.E1019K	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1104	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GAAACATTTTCCTCACTTGGC	0.512										HNSCC(64;0.19)			8	35					0	0	0.000157383	0	0
SPEF2	79925	broad.mit.edu	37	5	35712950	35712950	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:35712950G>A	uc003jjo.2	+	20	2987	c.2876G>A	c.(2875-2877)GGA>GAA	p.G959E	SPEF2_uc003jjp.1_Missense_Mutation_p.G445E	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	959					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CTTCAGGAAGGAAAAGGGAAG	0.348													9	40					0	0	0.00136819	0	0
IL7R	3575	broad.mit.edu	37	5	35876382	35876382	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:35876382G>A	uc003jjs.2	+	8	1263	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	392	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			AGACTGCAGGGAGAGTGGCAA	0.532													7	19					0	0	0.000157383	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049378	36049378	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:36049378G>A	uc003jjz.1	-	4	549	c.456C>T	c.(454-456)TTC>TTT	p.F152F	UGT3A2_uc011cos.1_Silent_p.F118F|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	152	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAGCAATCAGGAAAGGACAGT	0.408													11	29					0	0	0.000673444	0	0
NIPBL	25836	broad.mit.edu	37	5	37061013	37061013	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:37061013G>A	uc003jkl.3	+	45	8252	c.7753G>A	c.(7753-7755)GGA>AGA	p.G2585R	NIPBL_uc003jkk.3_Missense_Mutation_p.G2585R|NIPBL_uc003jkn.2_Missense_Mutation_p.G278R	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2585					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			CCGAAAAACAGGAGTTCATTT	0.348													21	51					0	0	0.00188189	0	0
EGFLAM	133584	broad.mit.edu	37	5	38427148	38427148	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:38427148G>A	uc003jlc.1	+	14	2172	c.1848G>A	c.(1846-1848)CTG>CTA	p.L616L	EGFLAM_uc003jlb.1_Silent_p.L616L|EGFLAM_uc003jle.1_Silent_p.L382L|EGFLAM_uc003jlf.1_5'UTR	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	616	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GAGAGTCTCTGAGATCTTACG	0.413													21	90					0	0	0.00047179	0	0
EGFLAM	133584	broad.mit.edu	37	5	38458461	38458461	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:38458461C>T	uc003jlc.1	+	21	3084	c.2760C>T	c.(2758-2760)TTC>TTT	p.F920F	EGFLAM_uc003jlb.1_Silent_p.F912F|EGFLAM_uc003jle.1_Silent_p.F678F|EGFLAM_uc003jlf.1_Silent_p.F278F|EGFLAM_uc003jlg.1_Silent_p.F55F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	920	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ATGGCTCCTTCAACGATGGTC	0.532													11	57					0	0	0.00185496	0	0
LIFR	3977	broad.mit.edu	37	5	38530672	38530672	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:38530672G>A	uc010ive.1	-	2	410	c.78C>T	c.(76-78)TTC>TTT	p.F26F	LIFR_uc003jli.2_Silent_p.F26F	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	26					positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					ACAGCCACTGGAAATTTGAAG	0.383			T	PLAG1	salivary adenoma								11	50					0	0	0.000673444	0	0
C9	735	broad.mit.edu	37	5	39285317	39285317	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:39285317A>T	uc003jlv.3	-	11	1753	c.1664T>A	c.(1663-1665)TTC>TAC	p.F555Y		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	555					complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			TTCATTGGGGAACTCTAGGGC	0.418													6	34					0	0	0.000274275	0	0
RPL37	6167	broad.mit.edu	37	5	40832606	40832606	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:40832606T>C	uc003jme.1	-	4	394	c.294A>G	c.(292-294)TAA>TAG	p.*98*		NM_000997	NP_000988	P61927	RL37_HUMAN	ribosomal protein L37	98					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	metal ion binding|protein binding|rRNA binding|structural constituent of ribosome				0		Breast(839;0.238)				GTTGACATTCTTAAGATGAAC	0.373													70	304					0	0	0.000781405	0	0
C7	730	broad.mit.edu	37	5	40936505	40936505	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:40936505G>A	uc003jmh.2	+	5	460	c.346G>A	c.(346-348)GAA>AAA	p.E116K	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	116	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CAGTGCTGATGAAGACAGATG	0.453													5	20					0	0	0.000602214	0	0
C6	729	broad.mit.edu	37	5	41160246	41160246	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:41160246G>A	uc003jmk.2	-	11	1892	c.1682C>T	c.(1681-1683)TCC>TTC	p.S561F	C6_uc003jml.1_Missense_Mutation_p.S561F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	561					complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATACTTACTGGATTTATAATC	0.403													15	27					0	0	0.000422831	0	0
C6	729	broad.mit.edu	37	5	41201710	41201710	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:41201710G>A	uc003jmk.2	-	3	460	c.250C>T	c.(250-252)CTG>TTG	p.L84L	C6_uc003jml.1_Silent_p.L84L	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	84	TSP type-1 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AAATCTCCCAGGAGGCAGTTG	0.443													5	17					0	0	0.000602214	0	0
OXCT1	5019	broad.mit.edu	37	5	41749663	41749663	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:41749663C>T	uc003jmn.2	-	15	1716	c.1385G>A	c.(1384-1386)GGA>GAA	p.G462E	OXCT1_uc011cpo.1_Missense_Mutation_p.G65E|OXCT1_uc011cpp.1_Missense_Mutation_p.G65E	NM_000436	NP_000427	P55809	SCOT1_HUMAN	3-oxoacid CoA transferase 1 precursor	462					cellular lipid metabolic process|ketone body catabolic process	mitochondrial matrix	3-oxoacid CoA-transferase activity|protein homodimerization activity			ovary(2)|large_intestine(1)	3					Succinic acid(DB00139)	ACATTGCTTTCCAGTCAATGG	0.299													4	14					0	0	0.00116845	0	0
GHR	2690	broad.mit.edu	37	5	42718993	42718993	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:42718993G>A	uc003jmt.2	+	10	1427	c.1384G>A	c.(1384-1386)GAA>AAA	p.E462K	GHR_uc011cpq.1_Missense_Mutation_p.E275K	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	462	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	ACTTCCTACTGAAGGAGCTGA	0.453													6	25					0	0	0.00198382	0	0
HCN1	348980	broad.mit.edu	37	5	45262164	45262164	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:45262164C>T	uc003jok.2	-	8	2557	c.2532G>A	c.(2530-2532)CAG>CAA	p.Q844Q		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	844	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CCGACGACATCTGTCGGAAGA	0.652													14	56					0	0	0.000308642	0	0
EMB	133418	broad.mit.edu	37	5	49699234	49699234	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:49699234C>T	uc003jom.2	-	6	904	c.655G>A	c.(655-657)GAA>AAA	p.E219K	EMB_uc010ivq.2_Missense_Mutation_p.E13K|EMB_uc003jol.2_Missense_Mutation_p.E150K|EMB_uc011cpy.1_Missense_Mutation_p.E169K|EMB_uc010ivr.2_Missense_Mutation_p.E165K	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	219	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				AGCTTTGTTTCGTTAGCATAT	0.378													5	18					0	0	0.000602214	0	0
ACTBL2	345651	broad.mit.edu	37	5	56777658	56777658	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:56777658C>T	uc003jrm.2	-	1	979	c.877G>A	c.(877-879)GAT>AAT	p.D293N		NM_001017992	NP_001017992	Q562R1	ACTBL_HUMAN	actin, beta-like 2	293						cytoplasm|cytoskeleton	ATP binding			ovary(3)	3		Lung NSC(810;0.000135)|Prostate(74;0.055)|Breast(144;0.0707)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;4.24e-37)		GCATAGAGATCCTTGCGAATA	0.493													6	48					0	0	0.00198382	0	0
RGS7BP	401190	broad.mit.edu	37	5	63802514	63802514	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:63802514C>T	uc003jtj.2	+	1	63	c.63C>T	c.(61-63)TTC>TTT	p.F21F		NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	21					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		CCTCGATCTTCCAGATCAGCA	0.632													9	35					0	0	0.000673444	0	0
BDP1	55814	broad.mit.edu	37	5	70845412	70845413	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:70845412_70845413CC>TT	uc003kbp.1	+	34	7237_7238	c.6974_6975CC>TT	c.(6973-6975)ACC>ATT	p.T2325I	BDP1_uc003kbq.1_Intron|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2325					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TCAGTGAATACCGAAGAAAGGG	0.411													12	79					0	0	6.4e-05	0	0
MCCC2	64087	broad.mit.edu	37	5	70922545	70922545	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:70922545A>T	uc003kbs.3	+	7	841	c.703A>T	c.(703-705)AAG>TAG	p.K235*	MCCC2_uc010iyv.1_Nonsense_Mutation_p.K235*|MCCC2_uc003kbt.3_Intron|MCCC2_uc003kbu.1_Nonsense_Mutation_p.K104*	NM_022132	NP_071415	Q9HCC0	MCCB_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	235	Carboxyltransferase.				leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)	1		Lung NSC(167;0.000697)|Prostate(74;0.0107)|Ovarian(174;0.0175)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.04e-54)	Biotin(DB00121)	CATTGTACGCAAGCAGGGTAC	0.473													8	34					0	0	0.000157383	0	0
HMGCR	3156	broad.mit.edu	37	5	74646750	74646750	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:74646750C>T	uc003kdp.2	+	9	1073	c.917C>T	c.(916-918)TCC>TTC	p.S306F	HMGCR_uc011cst.1_Missense_Mutation_p.S326F|HMGCR_uc003kdq.2_Missense_Mutation_p.S306F|HMGCR_uc010izn.1_Missense_Mutation_p.S107F	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	306					cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	CCAAGTGTTTCCCTCTGGCAG	0.348													72	233					0	0	0.000781405	0	0
SV2C	22987	broad.mit.edu	37	5	75596726	75596726	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:75596726G>A	uc003kei.1	+	11	1943	c.1809G>A	c.(1807-1809)CTG>CTA	p.L603L		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	603	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		CTGCTCTGCTGATGGACAGAA	0.453													18	65					0	0	0.00229938	0	0
CRHBP	1393	broad.mit.edu	37	5	76251529	76251529	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:76251529C>T	uc003ker.2	+	4	665	c.385C>T	c.(385-387)CAT>TAT	p.H129Y	CRHBP_uc010izx.2_Missense_Mutation_p.H129Y	NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	129					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		TTCCCAGGATCATCCTCTCCC	0.463													70	345					0	0	0.000781405	0	0
BHMT	635	broad.mit.edu	37	5	78411640	78411640	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:78411640G>A	uc003kfu.3	+	2	189	c.84G>A	c.(82-84)GGG>GGA	p.G28G	BHMT_uc011cti.1_Silent_p.G28G	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	28	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	GAGATGGAGGGTTTGTCTTTG	0.478													19	76					0	0	0.00188189	0	0
CMYA5	202333	broad.mit.edu	37	5	79025289	79025289	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:79025289C>T	uc003kgc.2	+	2	773	c.701C>T	c.(700-702)TCG>TTG	p.S234L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	234						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ATGTTTAATTCGGTTAAAGAA	0.323													9	37					0	0	0.000442599	0	0
CMYA5	202333	broad.mit.edu	37	5	79030637	79030637	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:79030637G>A	uc003kgc.2	+	2	6121	c.6049G>A	c.(6049-6051)GAA>AAA	p.E2017K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2017						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GATGGAGAGTGAAAGTTTGCT	0.408													5	17					0	0	0.00116845	0	0
CMYA5	202333	broad.mit.edu	37	5	79089401	79089401	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:79089401C>T	uc003kgc.2	+	12	12003	c.11931C>T	c.(11929-11931)ACC>ACT	p.T3977T		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3977	B30.2/SPRY.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAGGGGAGACCTCATGGTACA	0.567													8	39					0	0	0.000673444	0	0
VCAN	1462	broad.mit.edu	37	5	82808056	82808056	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:82808056G>A	uc003kii.3	+	6	1239	c.883G>A	c.(883-885)GAT>AAT	p.D295N	VCAN_uc003kij.3_Missense_Mutation_p.D295N|VCAN_uc010jau.2_Missense_Mutation_p.D295N|VCAN_uc003kik.3_Missense_Mutation_p.D295N|VCAN_uc003kih.3_Missense_Mutation_p.D295N	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	295	Link 2.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TGACCAGTGCGATTACGGGTG	0.602													5	26					0	0	0.00198382	0	0
VCAN	1462	broad.mit.edu	37	5	82876171	82876171	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:82876171C>T	uc003kii.3	+	15	10465	c.10109C>T	c.(10108-10110)TCC>TTC	p.S3370F	VCAN_uc003kij.3_Missense_Mutation_p.S2383F|VCAN_uc010jau.2_Missense_Mutation_p.S1616F|VCAN_uc003kik.3_Missense_Mutation_p.S629F|VCAN_uc003kil.3_Missense_Mutation_p.S2034F	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3370					cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TTTAAAAATTCCTCATCAGCA	0.388													6	53					0	0	0.00198382	0	0
NBPF22P	285622	broad.mit.edu	37	5	85578690	85578690	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:85578690G>A	uc003kiq.2	+	1	429	c.167G>A	c.(166-168)CGA>CAA	p.R56Q		NR_003719				SubName: Full=Putative uncharacterized protein NBPF22P;												0						CAGCAGTTCCGAGACCTCAAA	0.468													6	13					0	0	0.00116845	0	0
TMEM161B	153396	broad.mit.edu	37	5	87492296	87492296	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:87492296G>A	uc003kjc.2	-	12	1321	c.1196C>T	c.(1195-1197)TCC>TTC	p.S399F	TMEM161B_uc011cty.1_Missense_Mutation_p.S388F|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctx.1_Missense_Mutation_p.S190F	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	399						integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		AATACCCCAGGAATGATTACC	0.308													8	26					0	0	0.000978159	0	0
GPR98	84059	broad.mit.edu	37	5	90020657	90020657	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:90020657G>A	uc003kju.2	+	46	9853	c.9757G>A	c.(9757-9759)GAT>AAT	p.D3253N	GPR98_uc003kjt.2_Missense_Mutation_p.D959N|GPR98_uc003kjv.2_Missense_Mutation_p.D853N	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3253	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGGGGGAATGGATGTTGTGTT	0.294													39	187					0	0	0.000781405	0	0
GPR98	84059	broad.mit.edu	37	5	90046500	90046500	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:90046500C>T	uc003kju.2	+	53	11203	c.11107C>T	c.(11107-11109)CCT>TCT	p.P3703S	GPR98_uc003kjt.2_Missense_Mutation_p.P1409S|GPR98_uc003kjv.2_Missense_Mutation_p.P1303S	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3703	Calx-beta 24.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGATATATTTCCTACCTCAGG	0.378													33	111					0	0	0.00170553	0	0
GPR98	84059	broad.mit.edu	37	5	90052412	90052412	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:90052412G>A	uc003kju.2	+	56	11818	c.11722G>A	c.(11722-11724)GAT>AAT	p.D3908N	GPR98_uc003kjt.2_Missense_Mutation_p.D1614N|GPR98_uc003kjv.2_Missense_Mutation_p.D1508N	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3908	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGAAAATGACGATCCCAGAGG	0.443													10	30					0	0	0.000978159	0	0
MCTP1	79772	broad.mit.edu	37	5	94248532	94248533	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:94248532_94248533CC>TT	uc003kkx.2	-	9	1499_1500	c.1499_1500GG>AA	c.(1498-1500)GGG>GAA	p.G500E	MCTP1_uc003kkv.2_Missense_Mutation_p.G279E|MCTP1_uc003kkw.2_Missense_Mutation_p.G233E|MCTP1_uc003kkz.2_Missense_Mutation_p.G161E|MCTP1_uc003kku.2_Missense_Mutation_p.G16E	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	500	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		ACTTCTGATGCCCAAGCCGGAA	0.47													13	43					0	0	6.4e-05	0	0
MCTP1	79772	broad.mit.edu	37	5	94275843	94275843	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:94275843C>T	uc003kkx.2	-	5	1118	c.1118G>A	c.(1117-1119)GGA>GAA	p.G373E	MCTP1_uc003kkv.2_Missense_Mutation_p.G152E|MCTP1_uc003kkw.2_Missense_Mutation_p.G152E|MCTP1_uc003kkz.2_Missense_Mutation_p.G34E	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	373					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		CAAAATGATTCCAAGATCATG	0.413													6	38					0	0	0.000157383	0	0
PAM	5066	broad.mit.edu	37	5	102342696	102342696	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:102342696C>T	uc003knw.2	+	18	2368	c.1995C>T	c.(1993-1995)TTC>TTT	p.F665F	PAM_uc003kns.2_Silent_p.F558F|PAM_uc003knt.2_Silent_p.F665F|PAM_uc003knu.2_Silent_p.F665F|PAM_uc003knv.2_Silent_p.F665F|PAM_uc011cuz.1_Silent_p.F568F|PAM_uc003knz.2_5'Flank	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	665	Peptidyl-alpha-hydroxyglycine alpha- amidating lyase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	GTGGAAAGTTCATCACACAGT	0.443													6	21					0	0	0.00116845	0	0
APC	324	broad.mit.edu	37	5	112176564	112176564	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:112176564C>T	uc010jby.2	+	16	5653	c.5273C>T	c.(5272-5274)TCT>TTT	p.S1758F	APC_uc011cvt.1_Missense_Mutation_p.S1740F|APC_uc003kpz.3_Missense_Mutation_p.S1758F|APC_uc003kpy.3_Missense_Mutation_p.S1758F|APC_uc010jbz.2_Missense_Mutation_p.S1475F|APC_uc010jca.2_Missense_Mutation_p.S1058F	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1758	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GCGTCTTCTTCTGCACCCAAC	0.398		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			6	44					0	0	0.000157383	0	0
DMXL1	1657	broad.mit.edu	37	5	118485689	118485689	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:118485689C>T	uc003ksd.2	+	18	4348	c.4167C>T	c.(4165-4167)TTC>TTT	p.F1389F	DMXL1_uc010jcl.1_Silent_p.F1389F	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1389										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		CCCAGGCATTCAACAAGGCTG	0.433													5	20					0	0	0.00198382	0	0
TNFAIP8	25816	broad.mit.edu	37	5	118728837	118728837	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:118728837G>A	uc003ksh.2	+	3	1046	c.358G>A	c.(358-360)GAT>AAT	p.D120N	TNFAIP8_uc003ksf.1_3'UTR|TNFAIP8_uc003ksg.2_Missense_Mutation_p.D110N|TNFAIP8_uc011cwf.1_Missense_Mutation_p.D114N|TNFAIP8_uc003ksi.2_Missense_Mutation_p.D120N	NM_014350	NP_055165	O95379	TFIP8_HUMAN	tumor necrosis factor, alpha-induced protein 8	120					anti-apoptosis|apoptosis|negative regulation of anti-apoptosis	cytoplasm	caspase inhibitor activity|protein binding			ovary(1)	1		all_cancers(142;0.0317)|Prostate(80;0.111)|Breast(839;0.231)		Epithelial(69;4.63e-83)|OV - Ovarian serous cystadenocarcinoma(64;1.39e-82)|all cancers(49;4.88e-75)|GBM - Glioblastoma multiforme(465;0.00338)|BRCA - Breast invasive adenocarcinoma(61;0.0148)|COAD - Colon adenocarcinoma(49;0.0829)		CCATCAGGTGGATTATACCTT	0.423													7	38					0	0	0.000157383	0	0
PRR16	51334	broad.mit.edu	37	5	120021869	120021869	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:120021869C>T	uc003ksq.2	+	2	543	c.380C>T	c.(379-381)CCA>CTA	p.P127L	PRR16_uc003ksp.2_Missense_Mutation_p.P104L|PRR16_uc003ksr.2_Missense_Mutation_p.P57L	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	127	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		CCACCTCCTCCAAGGTTGACA	0.512													13	38					0	0	0.000422831	0	0
SNCAIP	9627	broad.mit.edu	37	5	121758579	121758579	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:121758579G>A	uc003ksw.1	+	4	353	c.147G>A	c.(145-147)TGG>TGA	p.W49*	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Nonsense_Mutation_p.W49*|SNCAIP_uc003ksx.1_Nonsense_Mutation_p.W96*|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Nonsense_Mutation_p.W49*	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	49					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GCTCTAGCTGGAATTGTGGCA	0.413													7	39					0	0	0.000274275	0	0
SNCAIP	9627	broad.mit.edu	37	5	121767676	121767676	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:121767676G>A	uc003ksw.1	+	6	1401	c.1195G>A	c.(1195-1197)GAG>AAG	p.E399K	SNCAIP_uc011cwl.1_5'UTR|SNCAIP_uc010jct.2_Missense_Mutation_p.E399K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E446K|SNCAIP_uc003ksy.1_Missense_Mutation_p.E33K|SNCAIP_uc003ksz.1_Missense_Mutation_p.E33K|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Missense_Mutation_p.E33K|SNCAIP_uc003kta.1_Missense_Mutation_p.E31K|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E93K|SNCAIP_uc010jcx.1_Missense_Mutation_p.E339K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	399	ANK 2.				cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TGGTCAGTTGGAGTGCGTACG	0.403													5	12					0	0	0.00116845	0	0
FBN2	2201	broad.mit.edu	37	5	127681084	127681084	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:127681084C>T	uc003kuu.2	-	24	3621	c.3182G>A	c.(3181-3183)CGA>CAA	p.R1061Q	FBN2_uc003kuv.2_Missense_Mutation_p.R1028Q	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1061					bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AACATCCCCTCGGTTAGCAAA	0.607													19	89					0	0	0.000586117	0	0
ACSL6	23305	broad.mit.edu	37	5	131303700	131303701	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:131303700_131303701GG>AA	uc010jdo.1	-	16	1536_1537	c.1453_1454CC>TT	c.(1453-1455)CCC>TTC	p.P485F	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.P510F|ACSL6_uc003kvy.1_Missense_Mutation_p.P510F|ACSL6_uc003kwb.2_Missense_Mutation_p.P475F|ACSL6_uc003kvz.1_Missense_Mutation_p.P410F|ACSL6_uc003kwa.1_Missense_Mutation_p.P496F|ACSL6_uc003kvw.1_Missense_Mutation_p.P131F|ACSL6_uc010jdn.1_Missense_Mutation_p.P500F	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	485	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATGATTGCAGGGAAGTGGCGCC	0.411													13	59					0	0	6.4e-05	0	0
P4HA2	8974	broad.mit.edu	37	5	131543475	131543475	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:131543475G>A	uc003kwh.2	-	8	1570	c.1006C>T	c.(1006-1008)CCG>TCG	p.P336S	P4HA2_uc003kwg.2_Missense_Mutation_p.P336S|P4HA2_uc003kwi.2_Missense_Mutation_p.P336S|P4HA2_uc003kwk.2_Missense_Mutation_p.P336S|P4HA2_uc003kwl.2_Missense_Mutation_p.P336S|P4HA2_uc003kwj.2_Missense_Mutation_p.P336S	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	336						endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	ACGATGTGCGGGCTGTCCCAC	0.532													16	115					0	0	0.00074312	0	0
AFF4	27125	broad.mit.edu	37	5	132232717	132232718	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:132232717_132232718GG>AA	uc003kyd.2	-	11	2012_2013	c.1604_1605CC>TT	c.(1603-1605)ACC>ATT	p.T535I	AFF4_uc011cxk.1_Missense_Mutation_p.T213I|AFF4_uc003kye.1_Missense_Mutation_p.T535I	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	535					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCTTTTGGATGGTTTTGGAGTC	0.49													37	85					0	0	6.4e-05	0	0
FBXL21	26223	broad.mit.edu	37	5	135276989	135276989	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:135276989G>A	uc010jec.1	+	5	955	c.934G>A	c.(934-936)GAA>AAA	p.E312K	FBXL21_uc003lbc.2_Intron	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	312					rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTTCTTCAAAGAAGAAACCCC	0.398													12	64					0	0	0.00185496	0	0
TRPC7	57113	broad.mit.edu	37	5	135692539	135692539	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:135692539G>A	uc003lbn.1	-	1	537	c.534C>T	c.(532-534)ATC>ATT	p.I178I	TRPC7_uc010jef.1_Silent_p.I170I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.I170I|TRPC7_uc010jei.1_Silent_p.I170I|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	179	Cytoplasmic (Potential).|ANK 4.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGATGTGCACGATCTCATACT	0.607													30	146					0	0	0.00283554	0	0
MYOT	9499	broad.mit.edu	37	5	137206604	137206604	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:137206604C>T	uc011cye.1	+	2	281	c.264C>T	c.(262-264)ACC>ACT	p.T88T	MYOT_uc003lbv.2_Silent_p.T88T|MYOT_uc011cyg.1_Intron|MYOT_uc011cyh.1_5'UTR	NM_001135940	NP_001129412	Q9UBF9	MYOTI_HUMAN	myotilin isoform b	88	Necessary for interaction with ACTN1.				muscle contraction	actin cytoskeleton|sarcolemma|sarcomere	actin binding|structural constituent of muscle			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TTACAACCACCTATAACCAGT	0.507													5	21					0	0	0.000602214	0	0
PKD2L2	27039	broad.mit.edu	37	5	137235301	137235301	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:137235301G>A	uc003lby.2	+	5	677	c.621G>A	c.(619-621)TCG>TCA	p.S207S	PKD2L2_uc010jep.1_Silent_p.S147S|PKD2L2_uc003lbw.1_Silent_p.S207S|PKD2L2_uc003lbx.2_Silent_p.S207S|PKD2L2_uc011cyi.1_5'UTR	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	207	Extracellular (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TATCAAAATCGAAATCTGAAA	0.368													11	65					0	0	0.000673444	0	0
KDM3B	51780	broad.mit.edu	37	5	137727023	137727023	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:137727023C>T	uc003lcy.1	+	8	1902	c.1702C>T	c.(1702-1704)CTG>TTG	p.L568L	KDM3B_uc010jew.1_Silent_p.L224L|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	568					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GAGCTCAGGCCTGTGTAAAGG	0.512													15	35					0	0	0.000422831	0	0
PSD2	84249	broad.mit.edu	37	5	139216584	139216584	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:139216584G>A	uc003leu.1	+	10	1797	c.1592G>A	c.(1591-1593)AGG>AAG	p.R531K		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	531	PH.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATGGCAAGAGGAGTGGGTGT	0.642													21	47					0	0	0.00229938	0	0
C5orf53	492311	broad.mit.edu	37	5	139508114	139508114	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:139508114C>T	uc003lfb.1	+	1	2594	c.53C>T	c.(52-54)ACC>ATC	p.T18I		NM_001007189	NP_001007190	A6NJ69	IGIP_HUMAN	IgA-inducing protein precursor	18						extracellular region					0						TGTAATATTACCATATTTGCT	0.368													7	57					0	0	0.00198382	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176933	140176933	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140176933G>T	uc003lhd.2	+	1	2490	c.2384G>T	c.(2383-2385)GGA>GTA	p.G795V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.G795V|PCDHA2_uc011czy.1_Missense_Mutation_p.G795V	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	795	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAATACGTAGGAAAGGTGAGT	0.388													6	36					2.7689e-08	9.79712e-08	0.00198382	1	0
PCDHA3	56145	broad.mit.edu	37	5	140181661	140181661	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140181661C>T	uc003lhf.2	+	1	879	c.879C>T	c.(877-879)TTC>TTT	p.F293F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.F293F	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	293	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCAAAATTCCATTTAGATC	0.393													35	119					0	0	0.00222228	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207901	140207901	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140207901G>A	uc003lho.2	+	1	252	c.225G>A	c.(223-225)CTG>CTA	p.L75L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.L75L|PCDHA6_uc011dab.1_Silent_p.L75L	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	75	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGACCTTCTGGAGGTAAATC	0.632													41	183					0	0	0.000680045	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208462	140208462	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140208462C>T	uc003lho.2	+	1	813	c.786C>T	c.(784-786)ATC>ATT	p.I262I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.I262I|PCDHA6_uc011dab.1_Silent_p.I262I	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	262	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAACAGTTATCAGACTGAATG	0.413													15	85					0	0	0.00244969	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140389223	140389223	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140389223G>A	uc003lii.2	+	4	2965	c.2725G>A	c.(2725-2727)GGA>AGA	p.G909R	PCDHA1_uc003lha.2_Missense_Mutation_p.G588R|PCDHA1_uc003lhb.2_Missense_Mutation_p.G852R|PCDHA2_uc003lhd.2_Missense_Mutation_p.G850R|PCDHA3_uc003lhf.2_Missense_Mutation_p.G852R|PCDHA4_uc003lhi.2_Missense_Mutation_p.G849R|PCDHA4_uc003lhh.1_Missense_Mutation_p.G849R|PCDHA5_uc003lhk.1_Missense_Mutation_p.G838R|PCDHA5_uc003lhl.2_Missense_Mutation_p.G838R|PCDHA6_uc003lhn.2_Missense_Mutation_p.G588R|PCDHA6_uc003lho.2_Missense_Mutation_p.G852R|PCDHA7_uc003lhq.2_Missense_Mutation_p.G839R|PCDHA8_uc003lhs.2_Missense_Mutation_p.G852R|PCDHA9_uc003lhu.2_Missense_Mutation_p.G852R|PCDHA10_uc003lhw.2_Missense_Mutation_p.G587R|PCDHA10_uc003lhx.2_Missense_Mutation_p.G850R|PCDHA11_uc003lia.2_Missense_Mutation_p.G851R|PCDHA12_uc003lic.2_Missense_Mutation_p.G843R|PCDHA13_uc003lie.1_Missense_Mutation_p.G852R|PCDHA13_uc003lif.2_Missense_Mutation_p.G852R|PCDHAC1_uc003lih.2_Missense_Mutation_p.G865R	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	909	4 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCAGAGGCAGGAGAAGTGTC	0.512													13	59					0	0	0.000308642	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481317	140481317	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140481317G>A	uc003lio.2	+	1	1084	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	362	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAACTCGGGAGAGACTGTACT	0.478													21	70					0	0	0.00188189	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516557	140516557	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140516557C>T	uc003liq.2	+	1	1758	c.1541C>T	c.(1540-1542)GCC>GTC	p.A514V		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	514	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACCTGTTTGCCCTCAGGTCG	0.697													23	89					0	0	0.000878237	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558927	140558927	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140558927A>G	uc011dai.1	+	1	1498	c.1312A>G	c.(1312-1314)ATG>GTG	p.M438V	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	438	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACATCTCAATATGACCGTGCT	0.552													21	376					0	0	0.00278032	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573174	140573174	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140573174C>T	uc003lix.2	+	1	1223	c.1049C>T	c.(1048-1050)TCA>TTA	p.S350L		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	350	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGATCGTATCATCATTTTCC	0.433													28	120					0	0	0.00209593	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574325	140574325	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140574325T>A	uc003lix.2	+	1	2374	c.2200T>A	c.(2200-2202)TTT>ATT	p.F734I		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	734	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGAGGGTCCTTTTCCAGGGCA	0.657													25	98					0	0	0.00283554	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725700	140725700	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140725700C>T	uc003ljm.1	+	1	2100	c.2100C>T	c.(2098-2100)GTC>GTT	p.V700V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.V460V|PCDHGA3_uc011dap.1_Silent_p.V700V	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	700	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGCCGCGGTCTCCTGCGTCT	0.682													24	102					0	0	0.00058488	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731113	140731113	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140731113C>T	uc003ljo.1	+	1	1286	c.1286C>T	c.(1285-1287)TCC>TTC	p.S429F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.S429F	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	429	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGCCCTTTCCTCCAGGACA	0.517													7	39					0	0	0.000274275	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745430	140745431	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140745430_140745431CG>AT	uc003lju.1	+	1	1533_1534	c.1533_1534CG>AT	c.(1531-1536)ACCGGT>ACATGT	p.G512C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.G512C	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	512	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTCTGACACCGGTGTCCTGTA	0.554													7	199					0	0	6.4e-05	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140792946	140792946	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140792946C>T	uc003lkl.1	+	1	204	c.204C>T	c.(202-204)GTC>GTT	p.V68V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Silent_p.V68V	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	68	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGCGGAGTCCGCATAGTCT	0.607													27	93					0	0	0.00178596	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140793565	140793565	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140793565G>A	uc003lkl.1	+	1	823	c.823G>A	c.(823-825)GAA>AAA	p.E275K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.E275K	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	275	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGACAGGGACGAAGGTGCCAA	0.463													7	28					0	0	0.000157383	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140793982	140793982	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140793982C>T	uc003lkl.1	+	1	1240	c.1240C>T	c.(1240-1242)CTT>TTT	p.L414F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.L414F	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	414	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACAGAGCCCTTGACAGGGA	0.438													17	109					0	0	0.00074312	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140802612	140802612	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:140802612C>T	uc003lkq.1	+	1	2076	c.1818C>T	c.(1816-1818)TCC>TCT	p.S606S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.S606S|PCDHGA11_uc003lkp.1_Silent_p.S606S	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	606	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGGCTGTCCTATCGCCTGC	0.667													12	67					0	0	0.00136819	0	0
NDFIP1	80762	broad.mit.edu	37	5	141517330	141517330	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:141517330C>T	uc003lmi.3	+	5	618	c.402C>T	c.(400-402)TTC>TTT	p.F134F	NDFIP1_uc003lmj.1_Intron	NM_030571	NP_085048	Q9BT67	NFIP1_HUMAN	Nedd4 family interacting protein 1	134	Helical; (Potential).				cellular iron ion homeostasis|negative regulation of gene expression|negative regulation of protein transport|negative regulation of transporter activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein ubiquitination	endosome membrane|extracellular region|Golgi membrane|integral to membrane|perinuclear region of cytoplasm	signal transducer activity				0		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGGGTTTTTCCTGTCTTTTT	0.453													32	156					0	0	0.00283554	0	0
SPRY4	81848	broad.mit.edu	37	5	141694238	141694238	+	Missense_Mutation	SNP	G	A	A	rs138416722		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:141694238G>A	uc003lml.2	-	2	695	c.436C>T	c.(436-438)CCG>TCG	p.P146S	SPRY4_uc010jgi.1_Missense_Mutation_p.P169S	NM_001127496	NP_001120968	Q9C004	SPY4_HUMAN	sprouty homolog 4 isoform 2	146					multicellular organismal development	cytoplasm|ruffle membrane	protein binding			ovary(1)|lung(1)	2		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGACCGCCGGGCCCTTGAGG	0.647									Testicular_Cancer_Familial_Clustering_of				20	84					0	0	0.00188189	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142513590	142513590	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:142513590A>T	uc011dbj.1	+	19	1792	c.1757A>T	c.(1756-1758)AAG>ATG	p.K586M	ARHGAP26_uc003lmt.2_Missense_Mutation_p.K586M|ARHGAP26_uc003lmw.2_Missense_Mutation_p.K586M	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	586	Ser-rich.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGTCTCGGAAGAAGAGCAGT	0.532													20	77					0	0	0.00121646	0	0
PRELID2	153768	broad.mit.edu	37	5	145197560	145197560	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:145197560G>A	uc003lnp.1	-	5	354	c.301C>T	c.(301-303)CGG>TGG	p.R101W	PRELID2_uc003lnq.1_Missense_Mutation_p.R89W|PRELID2_uc003lno.1_Missense_Mutation_p.R60W|PRELID2_uc003lnr.1_Missense_Mutation_p.R89W	NM_182960	NP_892005	Q8N945	PRLD2_HUMAN	PRELI domain containing 2 isoform a	101	PRELI/MSF1.										0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTTCTTTCCCGAGGATTGAGC	0.433													5	26					0	0	0.00198382	0	0
SH3RF2	153769	broad.mit.edu	37	5	145317495	145317495	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:145317495G>A	uc003lnt.2	+	2	242	c.4G>A	c.(4-6)GAT>AAT	p.D2N	SH3RF2_uc011dbl.1_Missense_Mutation_p.D2N	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	2							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAATAAAATGGATGATTTGAC	0.522													18	82					0	0	0.00229938	0	0
TCERG1	10915	broad.mit.edu	37	5	145843255	145843255	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:145843255C>T	uc003lob.2	+	5	1074	c.1034C>T	c.(1033-1035)CCT>CTT	p.P345L	TCERG1_uc003loc.2_Missense_Mutation_p.P345L|TCERG1_uc011dbt.1_Missense_Mutation_p.P345L	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	345	Pro-rich.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTGCTGTTCCTCATTCAGTA	0.532													16	101					0	0	0.00152264	0	0
SCGB3A2	117156	broad.mit.edu	37	5	147261022	147261022	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:147261022C>T	uc003lot.1	+	2	162	c.69C>T	c.(67-69)CTC>CTT	p.L23L		NM_054023	NP_473364	Q96PL1	SG3A2_HUMAN	secretoglobin, family 3A, member 2 precursor	23						extracellular region	binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCCTTCCTCATCAACAAAG	0.328													14	63					0	0	0.000308642	0	0
SPINK5	11005	broad.mit.edu	37	5	147481466	147481466	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:147481466C>T	uc003lox.2	+	15	1498	c.1425C>T	c.(1423-1425)GCC>GCT	p.A475A	SPINK5_uc010jgs.1_Silent_p.A447A|SPINK5_uc010jgr.2_Silent_p.A456A|SPINK5_uc003low.2_Silent_p.A475A|SPINK5_uc003loy.2_Silent_p.A475A	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	475	Kazal-like 7.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTGTGAGGCCTTCTTGTGAG	0.473													5	23					0	0	0.000602214	0	0
SPINK5	11005	broad.mit.edu	37	5	147499601	147499601	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:147499601G>A	uc003lox.2	+	25	2416	c.2343G>A	c.(2341-2343)ATG>ATA	p.M781I	SPINK5_uc010jgr.2_Missense_Mutation_p.M762I|SPINK5_uc003low.2_Missense_Mutation_p.M781I|SPINK5_uc003loy.2_Missense_Mutation_p.M781I	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	781	Kazal-like 12.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGCCAAATGAAAAATGGAA	0.383													9	23					0	0	0.000442599	0	0
ABLIM3	22885	broad.mit.edu	37	5	148579908	148579908	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:148579908C>T	uc003lpy.2	+	5	616	c.365C>T	c.(364-366)ACC>ATC	p.T122I	ABLIM3_uc003lpz.1_Missense_Mutation_p.T122I|ABLIM3_uc003lqa.1_Missense_Mutation_p.T130I|ABLIM3_uc003lqb.2_Missense_Mutation_p.T122I|ABLIM3_uc003lqc.1_Missense_Mutation_p.T122I|ABLIM3_uc003lqd.1_Missense_Mutation_p.T122I|ABLIM3_uc003lqf.2_Missense_Mutation_p.T122I|ABLIM3_uc003lqe.1_Missense_Mutation_p.T122I	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	122	LIM zinc-binding 2.				axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACAAGGTGACCTTCAGCGGT	0.542													7	27					0	0	0.000442599	0	0
PDE6A	5145	broad.mit.edu	37	5	149240503	149240504	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:149240503_149240504GG>CA	uc003lrg.3	-	22	2657_2658	c.2537_2538CC>TG	c.(2536-2538)CCC>CTG	p.P846L		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	846					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CCCCTGGGCTGGGGTTTCCCCC	0.569													4	19					0	0	6.4e-05	0	0
CSF1R	1436	broad.mit.edu	37	5	149449570	149449570	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:149449570C>T	uc003lrl.2	-	9	1571	c.1376G>A	c.(1375-1377)AGC>AAC	p.S459N	CSF1R_uc011dcd.1_Missense_Mutation_p.S311N|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.S459N	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	459	Ig-like C2-type 5.|Extracellular (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	GGGCTCCTGGCTCAGGACCTC	0.592													10	54					0	0	0.00185496	0	0
PDGFRB	5159	broad.mit.edu	37	5	149514562	149514563	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:149514562_149514563GG>TA	uc003lro.2	-	4	850_851	c.381_382CC>TA	c.(379-384)TTCCTC>TTTATC	p.L128I	PDGFRB_uc010jhd.2_5'UTR|PDGFRB_uc011dcg.1_Missense_Mutation_p.L128I	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	128	Extracellular (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TCATTAGGGAGGAAGCCCACGG	0.366			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								8	52					0	0	6.4e-05	0	0
TCOF1	6949	broad.mit.edu	37	5	149771578	149771578	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:149771578C>T	uc003lry.2	+	21	3464	c.3356C>T	c.(3355-3357)GCC>GTC	p.A1119V	TCOF1_uc011dch.1_Missense_Mutation_p.A1081V|TCOF1_uc003lrz.2_Missense_Mutation_p.A1081V|TCOF1_uc003lrx.2_Missense_Mutation_p.A1042V|TCOF1_uc003lsa.2_Missense_Mutation_p.A1042V	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	1119					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCCGTCCAGGCCAAAGGGACC	0.537													8	33					0	0	0.000274275	0	0
CCDC69	26112	broad.mit.edu	37	5	150578636	150578636	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:150578636C>T	uc003ltq.2	-	4	364	c.241G>A	c.(241-243)GAA>AAA	p.E81K	CCDC69_uc010jhu.2_5'UTR|CCDC69_uc011dcq.1_RNA	NM_015621	NP_056436	A6NI79	CCD69_HUMAN	coiled-coil domain containing 69	81	Potential.									ovary(2)	2		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGCTCCCTTTCCTTCTCCACC	0.527													11	67					0	0	0.00136819	0	0
FAT2	2196	broad.mit.edu	37	5	150906861	150906861	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:150906861G>A	uc003lue.3	-	16	10255	c.10242C>T	c.(10240-10242)ATC>ATT	p.I3414I	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Silent_p.I107I	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3414	Cadherin 30.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGCCACTTGGATAGCGATGT	0.532													16	89					0	0	0.000566183	0	0
GRIA1	2890	broad.mit.edu	37	5	152870511	152870511	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:152870511C>T	uc003lva.3	+	1	428	c.63C>T	c.(61-63)TTC>TTT	p.F21F	GRIA1_uc003luy.3_Silent_p.F21F|GRIA1_uc003luz.3_5'UTR|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.F21F|GRIA1_uc011dcx.1_5'Flank|GRIA1_uc011dcy.1_5'Flank|GRIA1_uc011dcz.1_5'Flank|GRIA1_uc010jia.1_Intron	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	21	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GTGCCAATTTCCCCAACAATA	0.532													19	99					0	0	0.000958276	0	0
FAM114A2	10827	broad.mit.edu	37	5	153407730	153407730	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:153407730G>A	uc003lvb.2	-	6	1197	c.609C>T	c.(607-609)AAC>AAT	p.N203N	FAM114A2_uc003lvc.2_Silent_p.N203N|FAM114A2_uc003lvd.2_Silent_p.N203N|FAM114A2_uc003lve.2_Silent_p.N19N|FAM114A2_uc011dda.1_Silent_p.N133N	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	203							purine nucleotide binding				0						TAGCATTTCGGTTCATCAGAC	0.388													6	51					0	0	0.000157383	0	0
GEMIN5	25929	broad.mit.edu	37	5	154292583	154292583	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:154292583G>A	uc003lvx.3	-	14	1954	c.1871C>T	c.(1870-1872)TCT>TTT	p.S624F	GEMIN5_uc011ddk.1_Missense_Mutation_p.S623F	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	624					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GGTCACTGGAGACTCAGGGCT	0.483													10	42					0	0	0.00185496	0	0
GEMIN5	25929	broad.mit.edu	37	5	154308218	154308219	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:154308218_154308219CC>TT	uc003lvx.3	-	6	865_866	c.782_783GG>AA	c.(781-783)GGG>GAA	p.G261E	GEMIN5_uc011ddk.1_Missense_Mutation_p.G260E	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	261	WD 4.				ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AAATCATCACCCCTGCAGATTA	0.47													8	34					0	0	6.4e-05	0	0
TIMD4	91937	broad.mit.edu	37	5	156381593	156381593	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:156381593G>A	uc003lwh.2	-	2	290	c.233C>T	c.(232-234)TCA>TTA	p.S78L	TIMD4_uc010jii.2_Missense_Mutation_p.S78L	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	78	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGACTTTCTTGAGGTCACCCT	0.527													59	283					0	0	0.000781405	0	0
HAVCR1	26762	broad.mit.edu	37	5	156479658	156479658	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:156479658G>A	uc010jij.1	-	4	572	c.387C>T	c.(385-387)GTC>GTT	p.V129V	HAVCR1_uc011ddl.1_5'UTR|HAVCR1_uc003lwi.2_Silent_p.V129V|HAVCR1_uc011ddm.1_Silent_p.V129V	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	129	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAGTAGTCGTGACCTTGGCTG	0.483													90	403					0	0	0.000781405	0	0
CYFIP2	26999	broad.mit.edu	37	5	156752617	156752617	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:156752617C>T	uc003lwq.2	+	19	2091	c.1953C>T	c.(1951-1953)ATC>ATT	p.I651I	CYFIP2_uc011ddn.1_Silent_p.I625I|CYFIP2_uc011ddo.1_Silent_p.I455I|CYFIP2_uc003lwr.2_Silent_p.I651I|CYFIP2_uc003lws.2_Silent_p.I651I|CYFIP2_uc003lwt.2_Silent_p.I554I|CYFIP2_uc011ddp.1_Silent_p.I385I	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	676					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CGGACCATATCCTGGAAACCA	0.542													43	174					0	0	0.00285205	0	0
CYFIP2	26999	broad.mit.edu	37	5	156816394	156816394	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:156816394C>T	uc003lwq.2	+	31	3543	c.3405C>T	c.(3403-3405)TTC>TTT	p.F1135F	CYFIP2_uc011ddn.1_Silent_p.F1109F|CYFIP2_uc011ddo.1_Silent_p.F939F|CYFIP2_uc003lwr.2_Silent_p.F1135F|CYFIP2_uc003lws.2_Silent_p.F1135F|CYFIP2_uc003lwt.2_Silent_p.F1038F|CYFIP2_uc011ddp.1_Silent_p.F869F|CYFIP2_uc003lwv.2_Silent_p.F90F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1160					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCATGCAGTTCGTGTACTGCA	0.617													31	144					0	0	0.000692331	0	0
GABRA6	2559	broad.mit.edu	37	5	161128565	161128565	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:161128565C>T	uc003lyu.2	+	9	1486	c.1148C>T	c.(1147-1149)TCA>TTA	p.S383L	GABRA6_uc003lyv.2_Missense_Mutation_p.S154L	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	383	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CCAATAGTTTCATCTTCCGAG	0.448										TCGA Ovarian(5;0.080)			11	72					0	0	0.000978159	0	0
ODZ2	57451	broad.mit.edu	37	5	167420062	167420062	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:167420062G>A	uc010jjd.2	+	5	1061	c.1061G>A	c.(1060-1062)AGG>AAG	p.R354K	ODZ2_uc003lzq.2_Missense_Mutation_p.R233K|ODZ2_uc003lzr.3_Missense_Mutation_p.R163K	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CTGCTGCCCAGGAATACTTTC	0.597													11	38					0	0	0.00136819	0	0
WWC1	23286	broad.mit.edu	37	5	167850856	167850856	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:167850856G>A	uc003lzu.2	+	11	1686	c.1593G>A	c.(1591-1593)ATG>ATA	p.M531I	WWC1_uc003lzv.2_Missense_Mutation_p.M531I|WWC1_uc011den.1_Missense_Mutation_p.M531I|WWC1_uc003lzw.2_Missense_Mutation_p.M330I	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	531					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		CAAAGTCCATGACCTCCCTAT	0.632													6	29					0	0	0.00116845	0	0
SLIT3	6586	broad.mit.edu	37	5	168201350	168201350	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:168201350C>T	uc003mab.2	-	13	1605	c.1185G>A	c.(1183-1185)CGG>CGA	p.R395R	SLIT3_uc010jjg.2_Silent_p.R395R|SLIT3_uc010jji.2_Silent_p.R395R|SLIT3_uc003mac.1_Silent_p.R192R	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	395	LRR 10.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACGTGTTCACCCGCAGGCAGT	0.537													43	193					0	0	0.000781405	0	0
SLIT3	6586	broad.mit.edu	37	5	168233455	168233455	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:168233455C>T	uc003mab.2	-	9	1351	c.931G>A	c.(931-933)GAA>AAA	p.E311K	SLIT3_uc010jjg.2_Missense_Mutation_p.E311K|SLIT3_uc010jji.2_Missense_Mutation_p.E311K|SLIT3_uc003mac.1_Missense_Mutation_p.E108K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	311	LRR 7.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACTTACATTTCGACGATGCCC	0.582													9	50					0	0	0.000673444	0	0
DOCK2	1794	broad.mit.edu	37	5	169122834	169122834	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:169122834G>A	uc003maf.2	+	10	951	c.871G>A	c.(871-873)GAT>AAT	p.D291N	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	291					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCTCAACAGGGATAAAATTTA	0.448													9	53					0	0	0.000673444	0	0
DOCK2	1794	broad.mit.edu	37	5	169127124	169127124	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:169127124C>T	uc003maf.2	+	13	1319	c.1239C>T	c.(1237-1239)TTC>TTT	p.F413F	DOCK2_uc011der.1_RNA|DOCK2_uc010jjl.1_5'Flank	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	413					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCTGGGATTCCCAGAGATCA	0.527													13	74					0	0	0.000566183	0	0
GABRP	2568	broad.mit.edu	37	5	170232728	170232728	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:170232728G>A	uc003mau.2	+	7	748	c.550G>A	c.(550-552)GAT>AAT	p.D184N	GABRP_uc011dev.1_Missense_Mutation_p.D184N	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	184	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGGGGGCTATGATGGAAATGA	0.502													5	27					0	0	0.000602214	0	0
RANBP17	64901	broad.mit.edu	37	5	170667947	170667947	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:170667947C>T	uc003mba.2	+	23	2454	c.2438C>T	c.(2437-2439)TCC>TTC	p.S813F	RANBP17_uc003mbb.2_Missense_Mutation_p.S138F|RANBP17_uc003mbd.2_Missense_Mutation_p.S176F|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	813					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CAGATCCTGTCCCTTGGGAGC	0.383			T	TRD@	ALL								16	71					0	0	0.000958276	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171766376	171766376	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:171766376G>A	uc003mbr.2	-	13	1904	c.1733C>T	c.(1732-1734)CCA>CTA	p.P578L		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	578					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTTGGGCTCTGGCCTCCTGCT	0.597													26	134					0	0	0.00283554	0	0
HRH2	3274	broad.mit.edu	37	5	175111126	175111126	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:175111126C>T	uc003mdd.2	+	1	2663	c.890C>T	c.(889-891)ACC>ATC	p.T297I	HRH2_uc003mdc.3_Missense_Mutation_p.T297I	NM_022304	NP_071640	P25021	HRH2_HUMAN	histamine receptor H2 isoform 2	297	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|immune response	integral to plasma membrane	histamine receptor activity			ovary(1)	1	all_cancers(89;0.00805)|Renal(175;0.000269)|Lung NSC(126;0.00419)|all_lung(126;0.00711)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Colorectal(1;0.0154)|COAD - Colon adenocarcinoma(1;0.149)	Betazole(DB00272)|Cimetidine(DB00501)|Doxepin(DB01142)|Epinastine(DB00751)|Famotidine(DB00927)|Histamine Phosphate(DB00667)|Nizatidine(DB00585)|Ranitidine(DB00863)	GACTTCCGCACCGGGTACCAA	0.572													7	28					0	0	0.00198382	0	0
FAM153B	202134	broad.mit.edu	37	5	175530253	175530253	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:175530253G>A	uc003mdk.2	+	13	745	c.688G>A	c.(688-690)GAG>AAG	p.E230K		NM_001079529	NP_001072997	P0C7A2	F153B_HUMAN	hypothetical protein LOC202134	230										ovary(1)	1	all_cancers(89;0.00406)|Renal(175;0.000269)|Lung NSC(126;0.0103)|all_lung(126;0.0164)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Kidney(146;0.0965)		TGTACTTCAGGAGCTGTCCAG	0.488													22	299					0	0	0.001512	0	0
FAM153B	202134	broad.mit.edu	37	5	175530764	175530764	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:175530764C>A	uc003mdk.2	+	14	798	c.741C>A	c.(739-741)TCC>TCA	p.S247S		NM_001079529	NP_001072997	P0C7A2	F153B_HUMAN	hypothetical protein LOC202134	247										ovary(1)	1	all_cancers(89;0.00406)|Renal(175;0.000269)|Lung NSC(126;0.0103)|all_lung(126;0.0164)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Kidney(146;0.0965)		TACAGACATCCTTGGGAGTTC	0.453													12	104					7.26314e-15	2.57812e-14	0.00127121	1	0
CDHR2	54825	broad.mit.edu	37	5	176016373	176016373	+	Silent	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:176016373A>G	uc003mem.1	+	23	3117	c.3051A>G	c.(3049-3051)CAA>CAG	p.Q1017Q	CDHR2_uc003men.1_Silent_p.Q1017Q	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1017	Extracellular (Potential).|Cadherin 9.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GCACCTACCAAGTGACAGTCC	0.632													14	110					0	0	0.000958276	0	0
HK3	3101	broad.mit.edu	37	5	176316426	176316426	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:176316426G>A	uc003mfa.2	-	8	962	c.870C>T	c.(868-870)TTC>TTT	p.F290F	HK3_uc003mez.2_5'UTR	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	290	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGGTATGGTCGAAGGTGGTCA	0.632													14	55					0	0	0.00074312	0	0
DOK3	79930	broad.mit.edu	37	5	176931822	176931822	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:176931822G>A	uc003mhk.2	-	5	740	c.735C>T	c.(733-735)ATC>ATT	p.I245I	DOK3_uc003mhh.3_Silent_p.I75I|DOK3_uc003mhi.3_Silent_p.I189I|DOK3_uc003mhj.3_Silent_p.I87I|DOK3_uc003mhl.2_Silent_p.I189I	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	245	IRS-type PTB.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			CCCTCAGCTGGATGGCGTCTG	0.682													12	39					0	0	0.00136819	0	0
GMCL1L	64396	broad.mit.edu	37	5	177612955	177612955	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:177612955C>T	uc003mit.1	-	1	1479	c.1346G>A	c.(1345-1347)CGA>CAA	p.R449Q		NR_003281				SubName: Full=Germ cell-less homolog 1 (Drosophila); SubName: Full=Putative uncharacterized protein FLJ13057;												0						TATGCTCCTTCGAGGCCGTAA	0.393													11	32					0	0	0.000673444	0	0
COL23A1	91522	broad.mit.edu	37	5	177686725	177686725	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:177686725C>T	uc003mje.2	-	12	1084	c.726G>A	c.(724-726)AAG>AAA	p.K242K	COL23A1_uc010jkt.2_Missense_Mutation_p.R90K	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	242	Extracellular (Potential).|Collagen-like 1.|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		CTCTCACCTTCTTTCCAGGTA	0.622													30	107					0	0	0.000953801	0	0
COL23A1	91522	broad.mit.edu	37	5	177690259	177690259	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:177690259G>A	uc003mje.2	-	9	947	c.589C>T	c.(589-591)CCT>TCT	p.P197S	COL23A1_uc010jkt.2_Silent_p.A44A	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	197	Extracellular (Potential).|Collagen-like 1.|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		TCGCCAGGAGGGCCCCGGGCC	0.652													10	30					0	0	0.000442599	0	0
ZNF454	285676	broad.mit.edu	37	5	178392201	178392201	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:178392201C>T	uc003mjo.1	+	5	1067	c.796C>T	c.(796-798)CAT>TAT	p.H266Y	ZNF454_uc010jkz.1_Missense_Mutation_p.H266Y	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	266	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TCAGAAAATTCATACTGGAGA	0.418													18	97					0	0	0.00121646	0	0
C5orf45	51149	broad.mit.edu	37	5	179268957	179268957	+	Silent	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:179268957G>T	uc003mla.2	-	5	443	c.399C>A	c.(397-399)TCC>TCA	p.S133S	C5orf45_uc003mky.2_Silent_p.S130S|C5orf45_uc011dgt.1_Silent_p.S133S|C5orf45_uc011dgu.1_Silent_p.S78S|C5orf45_uc003mlc.2_Silent_p.S78S|C5orf45_uc003mlb.2_5'UTR	NM_016175	NP_057259	Q6NTE8	CE045_HUMAN	hypothetical protein LOC51149 isoform 1	133											0						CCTCCATTTTGGATGAAGGCT	0.567													12	334					0.00244969	0.00856862	0.00244969	1	0
RASGEF1C	255426	broad.mit.edu	37	5	179564661	179564661	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:179564661G>A	uc003mlq.2	-	2	526	c.229C>T	c.(229-231)CGG>TGG	p.R77W	RASGEF1C_uc003mlr.2_Missense_Mutation_p.R77W|RASGEF1C_uc003mlp.3_5'Flank	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	77	N-terminal Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGAGCTCCCGGGGCTCGATG	0.652													12	38					0	0	0.000422831	0	0
FLT4	2324	broad.mit.edu	37	5	180043924	180043924	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:180043924C>T	uc003mma.3	-	22	3151	c.3072G>A	c.(3070-3072)GGG>GGA	p.G1024G	FLT4_uc003mlz.3_Silent_p.G1024G	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1024	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GGAACTCCATCCCTCTGGCCA	0.602									Congenital_Hereditary_Lymphedema				22	95					0	0	0.001512	0	0
FLT4	2324	broad.mit.edu	37	5	180047284	180047284	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:180047284C>T	uc003mma.3	-	17	2510	c.2431G>A	c.(2431-2433)GGC>AGC	p.G811S	FLT4_uc003mlz.3_Missense_Mutation_p.G811S|FLT4_uc003mmb.1_Missense_Mutation_p.G344S	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	811	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GACAGGTAGCCCGTCTTGATG	0.622									Congenital_Hereditary_Lymphedema				18	133					0	0	0.00278032	0	0
DSP	1832	broad.mit.edu	37	6	7580528	7580528	+	Missense_Mutation	SNP	G	A	A	rs141805096		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:7580528G>A	uc003mxp.1	+	23	4384	c.4105G>A	c.(4105-4107)GAG>AAG	p.E1369K	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1369	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GTTTGAGACCGAGATCAACAT	0.463													34	44					0	0	0.000692331	0	0
DSP	1832	broad.mit.edu	37	6	7582972	7582972	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:7582972A>T	uc003mxp.1	+	24	5756	c.5477A>T	c.(5476-5478)AAG>ATG	p.K1826M	DSP_uc003mxq.1_Missense_Mutation_p.K1227M	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1826	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAGCAAGACAAGGCAAGGCTG	0.483													52	98					0	0	0.000781405	0	0
BMP6	654	broad.mit.edu	37	6	7880438	7880438	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:7880438G>A	uc003mxu.3	+	7	1582	c.1404G>A	c.(1402-1404)ATG>ATA	p.M468I		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	468					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					TTCACCTTATGAACCCCGAGT	0.448													56	89					0	0	0.000781405	0	0
MAK	4117	broad.mit.edu	37	6	10775656	10775656	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:10775656C>T	uc003mzl.2	-	11	1731	c.1502G>A	c.(1501-1503)GGA>GAA	p.G501E	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.G501E	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	501					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				TATTTCCTTTCCACTGGCTAT	0.448													38	87					0	0	0.00170553	0	0
RBM24	221662	broad.mit.edu	37	6	17284914	17284914	+	Missense_Mutation	SNP	C	T	T	rs143113042		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:17284914C>T	uc003nbz.3	+	3	323	c.319C>T	c.(319-321)CAT>TAT	p.H107Y	RBM24_uc003nby.3_Missense_Mutation_p.H107Y|RBM24_uc011dix.1_Missense_Mutation_p.H49Y|RBM24_uc003nca.2_Missense_Mutation_p.H62Y	NM_001143942	NP_001137414	Q9BX46	RBM24_HUMAN	RNA binding motif protein 24 isoform 1	107					cell differentiation|regulation of mRNA stability|regulation of myotube differentiation	cytoplasm|nucleus	mRNA 3'-UTR binding|nucleotide binding			ovary(1)|skin(1)	2	Breast(50;0.0615)|Ovarian(93;0.0733)	all_hematologic(90;0.062)	all cancers(50;0.131)|Epithelial(50;0.15)			TCAACAACTTCATCCAGCCCT	0.333													74	166					0	0	0.000781405	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596520	24596521	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:24596520_24596521CC>TT	uc011djo.1	-	3	618_619	c.381_382GG>AA	c.(379-384)TCGGGG>TCAAGG	p.G128R	KIAA0319_uc011djp.1_Missense_Mutation_p.G83R|KIAA0319_uc003neh.1_Missense_Mutation_p.G128R|KIAA0319_uc011djq.1_Missense_Mutation_p.G119R|KIAA0319_uc011djr.1_Missense_Mutation_p.G128R	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	128	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						CCCCAGATCCCCGAGGGGGAGC	0.554													13	28					0	0	6.4e-05	0	0
SLC17A4	10050	broad.mit.edu	37	6	25776915	25776915	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:25776915C>T	uc003nfe.2	+	9	1199	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I	SLC17A4_uc011djx.1_Silent_p.I130I|SLC17A4_uc003nff.1_Silent_p.I121I|SLC17A4_uc003nfg.2_Silent_p.I297I|SLC17A4_uc010jqa.2_Intron	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	360					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						CCAGAAAAATCCTCAGACTCA	0.498													12	28					0	0	0.00136819	0	0
HIST1H4G	8369	broad.mit.edu	37	6	26247196	26247196	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:26247196G>A	uc003nhf.2	-	1	10	c.10C>T	c.(10-12)CGG>TGG	p.R4W		NM_003547	NP_003538	Q99525	H4G_HUMAN	histone cluster 1, H4g	4					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				GCCTTGCCCCGAACAGACATG	0.468													26	24					0	0	0.00106085	0	0
OR2J3	442186	broad.mit.edu	37	6	29080091	29080091	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:29080091C>T	uc011dll.1	+	1	424	c.424C>T	c.(424-426)CGT>TGT	p.R142C		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	142	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATGCACCCTCGTTTCTGCCA	0.527													61	111					0	0	0.000781405	0	0
OR2J2	26707	broad.mit.edu	37	6	29141830	29141830	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:29141830C>T	uc011dlm.1	+	1	520	c.418C>T	c.(418-420)CGT>TGT	p.R140C		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	140	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATGCACCCTCGTTTCTGCCA	0.468													69	119					0	0	0.000781405	0	0
OR2J2	26707	broad.mit.edu	37	6	29141959	29141959	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:29141959C>T	uc011dlm.1	+	1	649	c.547C>T	c.(547-549)CCA>TCA	p.P183S		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTGAAGTTCCAGCACTTCT	0.438													35	61					0	0	0.000692331	0	0
OR2J2	26707	broad.mit.edu	37	6	29142337	29142337	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:29142337G>A	uc011dlm.1	+	1	1027	c.925G>A	c.(925-927)GAG>AAG	p.E309K		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATTGGGGTGGGAGTGGGGGAA	0.443													12	30					0	0	0.00136819	0	0
MDC1	9656	broad.mit.edu	37	6	30680528	30680529	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:30680528_30680529GG>AA	uc003nrg.3	-	5	1630_1631	c.1190_1191CC>TT	c.(1189-1191)TCC>TTT	p.S397F	MDC1_uc003nrf.3_Missense_Mutation_p.S51F|MDC1_uc011dmp.1_Missense_Mutation_p.S269F|MDC1_uc003nrh.1_Missense_Mutation_p.S269F|MDC1_uc003nri.2_Missense_Mutation_p.S397F	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	397	Required for nuclear localization (NLS1).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TGATAACCATGGAAGCTTGGCT	0.54								Other_conserved_DNA_damage_response_genes					27	45					0	0	6.4e-05	0	0
BAT2	7916	broad.mit.edu	37	6	31601235	31601235	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:31601235C>T	uc003nvb.3	+	17	4648	c.4399C>T	c.(4399-4401)CAA>TAA	p.Q1467*	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Nonsense_Mutation_p.Q1467*	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1467	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CCGCCTGGACCAAGTTATCCA	0.602													20	37					0	0	0.00152264	0	0
STK19	8859	broad.mit.edu	37	6	31948456	31948456	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:31948456C>T	uc003nyv.2	+	7	1067	c.939C>T	c.(937-939)GTC>GTT	p.V313V	STK19_uc003nyt.2_Silent_p.V266V|STK19_uc011dox.1_Silent_p.V270V|STK19_uc003nyw.2_Silent_p.V309V|STK19_uc010jtn.1_RNA|C4A_uc011doy.1_5'Flank|C4A_uc011doz.1_5'Flank|C4A_uc011dpa.1_5'Flank	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	313						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						TTAGCATGGTCCGGAAGGCAA	0.612													29	43					0	0	0.00058488	0	0
TNXB	7148	broad.mit.edu	37	6	32029366	32029366	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:32029366G>A	uc003nzl.2	-	21	7502	c.7300C>T	c.(7300-7302)CCC>TCC	p.P2434S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2494	Fibronectin type-III 17.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGGCCCTGGGGGACGGTCCAG	0.692													96	137					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	32041686	32041686	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:32041686C>T	uc003nzl.2	-	12	4621	c.4419G>A	c.(4417-4419)CTG>CTA	p.L1473L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1560					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCGTGGCTCCAGCGGGGACT	0.562													138	227					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	32065731	32065731	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:32065731G>A	uc003nzl.2	-	2	447	c.245C>T	c.(244-246)TCC>TTC	p.S82F	TNXB_uc010jts.1_Missense_Mutation_p.S81F|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	82					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACAGCCAGTGGAAGGGGGCAG	0.612													79	139					0	0	0.000781405	0	0
PRRT1	80863	broad.mit.edu	37	6	32117022	32117022	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:32117022G>T	uc003nzt.2	-	4	1014	c.898C>A	c.(898-900)CAC>AAC	p.H300N	PRRT1_uc003nzs.2_Missense_Mutation_p.H341N|PRRT1_uc003nzu.2_Missense_Mutation_p.P192Q	NM_030651	NP_085154	Q99946	PRRT1_HUMAN	NG5 protein	300					response to biotic stimulus	integral to membrane				breast(1)	1						TAGTTCTCGTGGTGCTGCGCG	0.622													9	296					0.00244969	0.00856862	0.00244969	1	0
NOTCH4	4855	broad.mit.edu	37	6	32185036	32185036	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:32185036G>A	uc003obb.2	-	10	1771	c.1632C>T	c.(1630-1632)TCC>TCT	p.S544S	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.S544S	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	544	EGF-like 13; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ATCGGGTGCCGGAGAATCCTG	0.612													55	100					0	0	0.000781405	0	0
C6orf10	10665	broad.mit.edu	37	6	32261273	32261273	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:32261273C>T	uc011dpy.1	-	12	1350	c.1177G>A	c.(1177-1179)GGA>AGA	p.G393R	C6orf10_uc011dpx.1_Missense_Mutation_p.G175R	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	393						integral to membrane				skin(1)	1						GCTTCCTGTCCCTTTGAGACA	0.488													40	69					0	0	0.00128727	0	0
WDR46	9277	broad.mit.edu	37	6	33248603	33248603	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:33248603C>A	uc003ods.2	-	11	1321	c.1277G>T	c.(1276-1278)TGG>TTG	p.W426L	WDR46_uc011dra.1_Missense_Mutation_p.W372L	NM_005452	NP_005443	O15213	WDR46_HUMAN	WD repeat domain 46 isoform 1	426	WD 6.										0						CTGCCCTGCCCAGATGTTGAC	0.647													31	24					6.84511e-11	2.42489e-10	0.00058488	1	0
SYNGAP1	8831	broad.mit.edu	37	6	33409391	33409391	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:33409391C>T	uc011dri.1	+	13	2344	c.2149C>T	c.(2149-2151)CTC>TTC	p.L717F	SYNGAP1_uc010juy.2_Missense_Mutation_p.L702F|SYNGAP1_uc010juz.2_Missense_Mutation_p.L429F	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	717					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						ACTGCCCCGGCTCCTCAACGA	0.652													9	25					0	0	0.000673444	0	0
SCUBE3	222663	broad.mit.edu	37	6	35210914	35210914	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:35210914G>A	uc003okf.1	+	15	1816	c.1810G>A	c.(1810-1812)GAT>AAT	p.D604N	SCUBE3_uc003okg.1_Missense_Mutation_p.D603N|SCUBE3_uc003okh.1_Missense_Mutation_p.D491N	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	604					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						GGCAGGCCTTGATTATGAGCT	0.637													36	45					0	0	0.00195071	0	0
MAPK13	5603	broad.mit.edu	37	6	36106805	36106805	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:36106805G>A	uc003ols.2	+	11	1089	c.991G>A	c.(991-993)GAG>AAG	p.E331K	MAPK13_uc003olt.2_RNA	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13	331					cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						CTTAGAACACGAGAAACTCAC	0.597													20	29					0	0	0.00188189	0	0
DNAH8	1769	broad.mit.edu	37	6	38941535	38941535	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:38941535C>T	uc003ooe.1	+	82	12573	c.11973C>T	c.(11971-11973)TTC>TTT	p.F3991F	DNAH8_uc003oog.1_Silent_p.F440F	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATGATTCTTTCCGAGTATGGA	0.403													13	31					0	0	0.000308642	0	0
KCNK16	83795	broad.mit.edu	37	6	39286889	39286889	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:39286889C>T	uc003ooq.2	-	2	248	c.234G>A	c.(232-234)GTG>GTA	p.V78V	KCNK16_uc003oor.3_Silent_p.V78V|KCNK16_uc010jwy.2_Silent_p.V78V|KCNK16_uc011dtz.1_Silent_p.V78V	NM_032115	NP_115491	Q96T55	KCNKG_HUMAN	potassium channel, subfamily K, member 16	78						integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(1)	3						TCACACCTTTCACCCAGGCTT	0.413													22	37					0	0	0.000878237	0	0
KIF6	221458	broad.mit.edu	37	6	39545884	39545884	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:39545884T>C	uc003oot.2	-	10	1224	c.1129A>G	c.(1129-1131)ATG>GTG	p.M377V	KIF6_uc010jxa.1_Missense_Mutation_p.M168V|KIF6_uc011dua.1_Missense_Mutation_p.M377V|KIF6_uc010jxb.1_Missense_Mutation_p.M377V	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	377	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						CCAGTGACCATGGCCAGTTCA	0.428													3	105					0	0	0.000602214	0	0
TREML3	340206	broad.mit.edu	37	6	41185596	41185596	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:41185596C>T	uc003oqb.2	-	1		c.90G>A				NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						GTAAGGTACACCGACTTGGCG	0.498													9	15					0	0	0.000442599	0	0
FRS3	10817	broad.mit.edu	37	6	41739062	41739062	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:41739062G>A	uc003orc.1	-	7	1018	c.774C>T	c.(772-774)GGC>GGT	p.G258G		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	258					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TGGGACAGAGGCCCTGGCACT	0.612													12	30					0	0	0.000978159	0	0
KLHDC3	116138	broad.mit.edu	37	6	42987057	42987057	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:42987057C>T	uc003otl.2	+	10	1204	c.1035C>T	c.(1033-1035)GCC>GCT	p.A345A	C6orf153_uc003otp.1_5'Flank|KLHDC3_uc003otm.2_RNA|KLHDC3_uc010jyf.2_Silent_p.A321A|KLHDC3_uc003otn.2_Silent_p.A229A|KLHDC3_uc003oto.2_Silent_p.A286A	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	345					reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding			upper_aerodigestive_tract(1)	1			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			GCAAACTGGCCGTGATTCAGT	0.498													170	217					0	0	0.000781405	0	0
GPR116	221395	broad.mit.edu	37	6	46830784	46830784	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:46830784C>T	uc003oyo.3	-	15	2329	c.2040G>A	c.(2038-2040)GGG>GGA	p.G680G	GPR116_uc011dwj.1_Silent_p.G235G|GPR116_uc011dwk.1_Silent_p.G109G|GPR116_uc003oyp.3_Silent_p.G538G|GPR116_uc003oyq.3_Silent_p.G680G|GPR116_uc010jzi.1_Silent_p.G352G	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	680	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GGATGACTTTCCCCGGCTCTC	0.498													11	20					0	0	0.00136819	0	0
CD2AP	23607	broad.mit.edu	37	6	47544322	47544322	+	Silent	SNP	C	A	A	rs144912461		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:47544322C>A	uc003oyw.2	+	7	1248	c.792C>A	c.(790-792)ACC>ACA	p.T264T		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	264					cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			AAACAGATACCGAAGGTAAAA	0.318													9	139					0.000978159	0.00343362	0.000978159	1	0
MUT	4594	broad.mit.edu	37	6	49403246	49403246	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:49403246G>A	uc003ozg.3	-	12	2302	c.2047C>T	c.(2047-2049)CCT>TCT	p.P683S		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	683	B12-binding.				fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ATGAGTTCAGGAACTAGGGTT	0.483													7	14					0	0	0.00198382	0	0
RHAG	6005	broad.mit.edu	37	6	49604489	49604489	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:49604489C>T	uc003ozk.3	-	1	99	c.37G>A	c.(37-39)GAA>AAA	p.E13K	RHAG_uc010jzl.2_Missense_Mutation_p.E13K|RHAG_uc010jzm.2_Missense_Mutation_p.E13K	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	13	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					ATGGCAATTTCCAGGACTATA	0.443													22	52					0	0	0.00047179	0	0
PGK2	5232	broad.mit.edu	37	6	49754324	49754324	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:49754324C>T	uc003ozu.2	-	1	684	c.577G>A	c.(577-579)GAA>AAA	p.E193K		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	193					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TAATCTAGTTCCTTCTTCATC	0.458													17	32					0	0	0.000566183	0	0
CRISP1	167	broad.mit.edu	37	6	49803125	49803125	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:49803125G>A	uc003ozw.2	-	8	733	c.654C>T	c.(652-654)TTC>TTT	p.F218F	CRISP1_uc003ozx.2_3'UTR	NM_001131	NP_001122	P54107	CRIS1_HUMAN	acidic epididymal glycoprotein-like 1 isoform 1	218					fusion of sperm to egg plasma membrane	extracellular space					0	Lung NSC(77;0.0358)					TGTCACAGTCGAAGTATTCAT	0.383													21	64					0	0	0.00188189	0	0
FAM83B	222584	broad.mit.edu	37	6	54805208	54805208	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:54805208G>A	uc003pck.2	+	5	1555	c.1439G>A	c.(1438-1440)CGA>CAA	p.R480Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	480										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTGCAACAACGAATGCCAACC	0.413													23	32					0	0	0.000720815	0	0
GFRAL	389400	broad.mit.edu	37	6	55223835	55223835	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:55223835G>A	uc003pcm.1	+	6	937	c.851G>A	c.(850-852)GGG>GAG	p.G284E		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	284	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GATATCCTTGGGACGGTCCTT	0.413													19	30					0	0	0.00121646	0	0
ZNF451	26036	broad.mit.edu	37	6	57006175	57006175	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:57006175C>T	uc003pdm.1	+	8	1002	c.778C>T	c.(778-780)CTT>TTT	p.L260F	ZNF451_uc003pdl.2_Missense_Mutation_p.L260F|ZNF451_uc003pdn.1_Missense_Mutation_p.L260F|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.L260F	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	260	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			AAATTGCTTCCTTCTTTTTAG	0.373													11	35					0	0	0.00185496	0	0
MYO6	4646	broad.mit.edu	37	6	76558187	76558187	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:76558187G>A	uc003pih.1	+	11	1296	c.1017G>A	c.(1015-1017)CGG>CGA	p.R339R	MYO6_uc003pig.1_Silent_p.R339R|MYO6_uc003pii.1_Silent_p.R339R	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	339	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		ATCTCTTCCGGGTAGTAGCTG	0.373													25	69					0	0	0.000720815	0	0
ELOVL4	6785	broad.mit.edu	37	6	80626583	80626583	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:80626583G>A	uc003pja.3	-	6	1006	c.687C>T	c.(685-687)ACC>ACT	p.T229T	ELOVL4_uc011dyt.1_RNA	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	229					fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	TGTGCCCAATGGTCACATGGA	0.403													17	25					0	0	0.00074312	0	0
PRSS35	167681	broad.mit.edu	37	6	84234041	84234041	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:84234041G>A	uc003pjz.2	+	2	1044	c.881G>A	c.(880-882)GGA>GAA	p.G294E	PRSS35_uc010kbm.2_Missense_Mutation_p.G294E	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	294	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		ATGGAACTTGGAATCAGCCCA	0.488													20	32					0	0	0.00152264	0	0
KIAA1009	22832	broad.mit.edu	37	6	84904664	84904664	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:84904664G>A	uc010kbp.2	-	10	1062	c.965C>T	c.(964-966)TCA>TTA	p.S322L	KIAA1009_uc003pkj.3_Missense_Mutation_p.S246L|KIAA1009_uc003pkk.2_Missense_Mutation_p.S322L|KIAA1009_uc003pki.3_5'UTR	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	322					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		ACCTTTCACTGAGCTCTTGAT	0.333													18	39					0	0	0.000958276	0	0
SNX14	57231	broad.mit.edu	37	6	86277278	86277278	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:86277278C>A	uc003pkr.2	-	5	628	c.435G>T	c.(433-435)TTG>TTT	p.L145F	SNX14_uc003pkp.2_Missense_Mutation_p.L8F|SNX14_uc003pkq.2_5'UTR|SNX14_uc011dzg.1_Missense_Mutation_p.L93F|SNX14_uc003pks.2_Intron|SNX14_uc003pkt.2_Missense_Mutation_p.L145F	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a	145	PXA.				cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		CAAAGTTTTCCAACACTAATT	0.264													7	99					0.000673444	0.00236585	0.000673444	1	0
CASP8AP2	9994	broad.mit.edu	37	6	90572290	90572291	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:90572290_90572291CC>TT	uc003pnr.2	+	7	1058_1059	c.862_863CC>TT	c.(862-864)CCT>TTT	p.P288F	CASP8AP2_uc003pns.2_Intron|CASP8AP2_uc003pnt.2_Missense_Mutation_p.P288F|CASP8AP2_uc011dzz.1_Missense_Mutation_p.P288F	NM_001137667	NP_001131139	Q9UKL3	C8AP2_HUMAN	caspase 8 associated protein 2	288					cell cycle|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|nucleus	caspase activator activity|death receptor binding|transcription corepressor activity			ovary(2)	2		all_cancers(76;3.64e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;4.69e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0953)		ACAAGGACATCCTGAGAAATAT	0.391													73	128					0	0	6.4e-05	0	0
COQ3	51805	broad.mit.edu	37	6	99828095	99828095	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:99828095G>A	uc003ppk.2	-	3	383	c.356C>T	c.(355-357)TCC>TTC	p.S119F		NM_017421	NP_059117	Q9NZJ6	COQ3_HUMAN	hexaprenyldihydroxybenzoate methyltransferase	119					glycerol metabolic process|ubiquinone biosynthetic process	mitochondrial matrix	2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity|3-demethylubiquinone-9 3-O-methyltransferase activity|hexaprenyldihydroxybenzoate methyltransferase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0625)		GTCATTCATGGAATGAAGAGG	0.398													16	31					0	0	0.000566183	0	0
PRDM1	639	broad.mit.edu	37	6	106552989	106552989	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:106552989C>T	uc003prd.2	+	5	1188	c.954C>T	c.(952-954)ATC>ATT	p.I318I	PRDM1_uc003pre.2_Silent_p.I184I	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	318					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CCTACGGGATCGAGAGACCCA	0.607			D|N|Mis|F|S		DLBCL								38	61					0	0	0.00111076	0	0
BEND3	57673	broad.mit.edu	37	6	107392151	107392151	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:107392151G>A	uc003prs.2	-	5	894	c.244C>T	c.(244-246)CTC>TTC	p.L82F		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	82										ovary(3)	3						CCTGCTAGGAGAGCCTGCAAA	0.567													11	24					0	0	0.00244969	0	0
RFX6	222546	broad.mit.edu	37	6	117232120	117232120	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:117232120C>T	uc003pxm.2	+	7	758	c.695C>T	c.(694-696)TCG>TTG	p.S232L		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	232					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CGTAAATATTCGCTTAGCTCA	0.343													21	59					0	0	0.00047179	0	0
ROS1	6098	broad.mit.edu	37	6	117681170	117681170	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:117681170G>A	uc003pxp.1	-	23	3649	c.3450C>T	c.(3448-3450)ATC>ATT	p.I1150I	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1150	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GAAATGGGTTGATTTCTGAAA	0.343			T	GOPC|ROS1	glioblastoma|NSCLC								8	20					0	0	0.000442599	0	0
PTPRK	5796	broad.mit.edu	37	6	128643321	128643321	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:128643321G>A	uc003qbk.2	-	3	725	c.358C>T	c.(358-360)CCT>TCT	p.P120S	PTPRK_uc003qbj.2_Missense_Mutation_p.P120S|PTPRK_uc010kfc.2_Missense_Mutation_p.P120S|PTPRK_uc011ebu.1_Missense_Mutation_p.P120S|PTPRK_uc003qbl.1_Intron|PTPRK_uc011ebv.1_Missense_Mutation_p.P120S|PTPRK_uc003qbm.3_Missense_Mutation_p.P49S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	120	Extracellular (Potential).|MAM.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AAAGTGCCAGGATTCAGTCCT	0.443													28	46					0	0	0.001512	0	0
SYNE1	23345	broad.mit.edu	37	6	152631852	152631852	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:152631852G>A	uc010kiw.2	-	88	17469	c.16867C>T	c.(16867-16869)CGT>TGT	p.R5623C	SYNE1_uc010kiv.2_Missense_Mutation_p.R147C|SYNE1_uc003qos.3_Missense_Mutation_p.R147C|SYNE1_uc003qot.3_Missense_Mutation_p.R5552C|SYNE1_uc003qou.3_Missense_Mutation_p.R5623C	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5623	Spectrin 17.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTCTGCAAACGAATTTTGATC	0.373										HNSCC(10;0.0054)			16	28					0	0	0.00188189	0	0
SYNE1	23345	broad.mit.edu	37	6	152737898	152737898	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:152737898C>T	uc010kiw.2	-	41	6276	c.5674G>A	c.(5674-5676)GAA>AAA	p.E1892K	SYNE1_uc003qot.3_Missense_Mutation_p.E1899K|SYNE1_uc003qou.3_Missense_Mutation_p.E1892K|SYNE1_uc010kjb.1_Missense_Mutation_p.E1875K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1892	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTGGTTGCTTCCACTGTTTGC	0.498										HNSCC(10;0.0054)			10	26					0	0	0.00185496	0	0
IPCEF1	26034	broad.mit.edu	37	6	154567804	154567804	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:154567804C>T	uc003qpx.2	-	5	320	c.164G>A	c.(163-165)GGA>GAA	p.G55E	OPRM1_uc003qpt.1_Intron|IPCEF1_uc003qpw.2_Missense_Mutation_p.G56E|IPCEF1_uc010kjh.2_Missense_Mutation_p.G56E	NM_015553	NP_056368	Q8WWN9	ICEF1_HUMAN	phosphoinositide-binding protein PIP3-E isoform	55	PH.				response to oxidative stress	cytoplasm|plasma membrane	oxygen transporter activity|peroxidase activity				0						TAGGAAACTTCCCTTTTCCTT	0.453													22	48					0	0	0.00152264	0	0
TIAM2	26230	broad.mit.edu	37	6	155450882	155450882	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:155450882C>T	uc003qqb.2	+	6	1798	c.525C>T	c.(523-525)GTC>GTT	p.V175V	TIAM2_uc003qqe.2_Silent_p.V175V	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	175					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GTTTAAGGGTCGAGTTCCACA	0.587													12	23					0	0	0.00185496	0	0
FNDC1	84624	broad.mit.edu	37	6	159653882	159653882	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:159653882G>A	uc010kjv.2	+	11	2538	c.2338G>A	c.(2338-2340)GGA>AGA	p.G780R	FNDC1_uc010kjw.1_Missense_Mutation_p.G665R	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	780						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GGTCTCTGAGGGAGCGGAGGC	0.662													10	19					0	0	0.000673444	0	0
MAS1	4142	broad.mit.edu	37	6	160328623	160328623	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:160328623G>A	uc003qsz.2	+	1	650	c.636G>A	c.(634-636)GTG>GTA	p.V212V		NM_002377	NP_002368	P04201	MAS_HUMAN	MAS1 oncogene	212	Cytoplasmic (Potential).				anatomical structure morphogenesis|cell proliferation|protein kinase C signaling cascade	integral to plasma membrane	angiotensin type II receptor activity			ovary(2)|lung(2)	4		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.6e-06)		TCTTGGTCGTGAAGATCCGGA	0.502													20	25					0	0	0.00188189	0	0
PDE10A	10846	broad.mit.edu	37	6	165801909	165801909	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:165801909C>T	uc003qun.2	-	18	1901	c.1660G>A	c.(1660-1662)GAC>AAC	p.D554N	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.D484N|PDE10A_uc003quo.2_Missense_Mutation_p.D564N	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	554		Divalent metal cation 2.|Divalent metal cation 1.		D->A: Loss of activity and of zinc binding.|D->N: Reduces activity 1000-fold.	platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	TGGTCCAGGTCATGACACAGA	0.498													20	54					0	0	0.00278032	0	0
MLLT4	4301	broad.mit.edu	37	6	168312016	168312016	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:168312016C>T	uc003qwd.2	+	15	2023	c.1881C>T	c.(1879-1881)GTC>GTT	p.V627V	MLLT4_uc003qwb.1_Silent_p.V612V|MLLT4_uc003qwc.1_Silent_p.V628V|MLLT4_uc003qwf.2_Silent_p.V313V|MLLT4_uc003qwg.1_5'Flank	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	628					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GCTCTACAGTCCACTTTAAGT	0.353			T	MLL	AL								22	78					0	0	0.00188189	0	0
PHF10	55274	broad.mit.edu	37	6	170112562	170112562	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr6:170112562G>A	uc011egy.1	-	8	956	c.877C>T	c.(877-879)CCT>TCT	p.P293S	PHF10_uc011egz.1_Missense_Mutation_p.P291S|PHF10_uc011eha.1_Missense_Mutation_p.P144S	NM_018288	NP_060758	Q8WUB8	PHF10_HUMAN	PHD finger protein 10 isoform a	293	Essential to induce neural progenitor proliferation (By similarity).|SAY.				nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	npBAF complex	zinc ion binding			urinary_tract(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.4e-21)|BRCA - Breast invasive adenocarcinoma(81;1.4e-07)|GBM - Glioblastoma multiforme(31;0.00176)		TCTAGAGCAGGGAGCTCAGGA	0.473													33	82					0	0	0.00128727	0	0
SDK1	221935	broad.mit.edu	37	7	4188922	4188922	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:4188922G>A	uc003smx.2	+	30	4591	c.4452G>A	c.(4450-4452)CTG>CTA	p.L1484L	SDK1_uc010kso.2_Silent_p.L760L|SDK1_uc003smy.2_5'UTR	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1484	Fibronectin type-III 9.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GAGAGCTCCTGGTGCCCCAGG	0.667													7	26					0	0	0.000274275	0	0
RBAK	57786	broad.mit.edu	37	7	5104229	5104229	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:5104229C>T	uc010kss.1	+	6	1466	c.1142C>T	c.(1141-1143)TCC>TTC	p.S381F	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.S381F	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	381	C2H2-type 5.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		TGTGGGAAATCCTTCTCCCGC	0.468													28	66					0	0	0.00283554	0	0
COL28A1	340267	broad.mit.edu	37	7	7545698	7545698	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:7545698C>T	uc003src.1	-	11	1090	c.973G>A	c.(973-975)GGA>AGA	p.G325R	COL28A1_uc011jxe.1_Silent_p.R10R|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	325	Collagen-like 2.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCAGTAATTCCCTGCTCCAGG	0.473													10	72					0	0	0.000673444	0	0
MACC1	346389	broad.mit.edu	37	7	20198516	20198516	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:20198516C>T	uc003sus.3	-	5	1777	c.1468G>A	c.(1468-1470)GAG>AAG	p.E490K	MACC1_uc010kug.2_Missense_Mutation_p.E490K	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	490					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						TTGGGAGGCTCCACTTGAACA	0.413													33	38					0	0	0.00283554	0	0
DNAH11	8701	broad.mit.edu	37	7	21781648	21781648	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:21781648C>T	uc003svc.2	+	50	8070	c.8039C>T	c.(8038-8040)CCA>CTA	p.P2680L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2680	AAA 3 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCATTTGCTCCATCAATTCTC	0.408									Kartagener_syndrome				14	72					0	0	0.00244969	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23391164	23391164	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:23391164G>A	uc003swg.2	-	6	709	c.443C>T	c.(442-444)ACC>ATC	p.T148I		NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	148	RRM 2.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						TACTTTCAAGGTGAAATTCTC	0.512													11	54					0	0	0.00244969	0	0
C7orf46	340277	broad.mit.edu	37	7	23731146	23731146	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:23731146G>A	uc003swo.3	+	4	657	c.568G>A	c.(568-570)GCC>ACC	p.A190T	C7orf46_uc003swq.3_Missense_Mutation_p.A190T|C7orf46_uc003swr.3_Missense_Mutation_p.A132T|C7orf46_uc003swp.3_RNA|C7orf46_uc010kup.2_RNA	NM_199136	NP_954587	A4D161	CG046_HUMAN	hypothetical protein LOC340277 isoform 1	190											0						TCCTTATGCAGCCATGGGAGG	0.478													40	90					0	0	0.00195071	0	0
STK31	56164	broad.mit.edu	37	7	23768756	23768756	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:23768756G>A	uc003sws.3	+	6	438	c.371G>A	c.(370-372)CGA>CAA	p.R124Q	STK31_uc003swt.3_Missense_Mutation_p.R101Q|STK31_uc011jze.1_Missense_Mutation_p.R124Q|STK31_uc010kuq.2_Missense_Mutation_p.R101Q	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	124	Tudor.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						ATTCTAAATCGATCTGATATA	0.358													35	83					0	0	0.00111076	0	0
WIPF3	644150	broad.mit.edu	37	7	29915505	29915505	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:29915505G>A	uc003taj.1	+	2	150	c.150G>A	c.(148-150)TTG>TTA	p.L50L		NM_001080529	NP_001073998	A6NGB9	WIPF3_HUMAN	WAS/WASL interacting protein family, member 3	50										ovary(1)	1						GTGCGCTGTTGGCTGATATCC	0.562													14	39					0	0	0.000422831	0	0
NOD1	10392	broad.mit.edu	37	7	30496450	30496450	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:30496450G>A	uc003tav.2	-	4	611	c.88C>T	c.(88-90)CTG>TTG	p.L30L	NOD1_uc010kvs.2_Silent_p.L30L|NOD1_uc003tax.2_RNA|NOD1_uc003tay.2_RNA|NOD1_uc010kvt.2_RNA|NOD1_uc010kvu.2_RNA	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	30	CARD.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						TGAGTGACCAGAAGTTCCCGA	0.488													28	87					0	0	0.001512	0	0
FAM188B	84182	broad.mit.edu	37	7	30825503	30825503	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:30825503C>A	uc003tbt.2	+	4	635	c.558C>A	c.(556-558)CAC>CAA	p.H186Q	FAM188B_uc010kwe.2_Missense_Mutation_p.H157Q	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	186											0						ACAAGCTTCACTCGGAGCCTT	0.537													26	60					1.06801e-11	3.78799e-11	0.00178596	1	0
FAM188B	84182	broad.mit.edu	37	7	30825511	30825511	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:30825511C>T	uc003tbt.2	+	4	643	c.566C>T	c.(565-567)CCT>CTT	p.P189L	FAM188B_uc010kwe.2_Missense_Mutation_p.P160L	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	189											0						CACTCGGAGCCTTCCTTGGAT	0.552													25	58					0	0	0.001512	0	0
VPS41	27072	broad.mit.edu	37	7	38766557	38766557	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:38766557G>A	uc003tgy.2	-	28	2462	c.2436C>T	c.(2434-2436)TTC>TTT	p.F812F	VPS41_uc003tgz.2_Silent_p.F787F|VPS41_uc010kxn.2_Silent_p.F723F|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	812	RING-type; atypical.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						GCCGGCAATGGAAGACCACCA	0.507													10	62					0	0	0.000978159	0	0
INHBA	3624	broad.mit.edu	37	7	41729736	41729736	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:41729736C>T	uc003thq.2	-	2	1028	c.793G>A	c.(793-795)GAG>AAG	p.E265K	INHBA_uc003thr.2_Missense_Mutation_p.E265K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	265					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						tccccctcctcttctttcttc	0.363										TSP Lung(11;0.080)			7	26					0	0	0.00198382	0	0
GLI3	2737	broad.mit.edu	37	7	42065950	42065951	+	Silent	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:42065950_42065951GG>AA	uc011kbh.1	-	8	1180_1181	c.1089_1090CC>TT	c.(1087-1092)ATCCTA>ATTTTA	p.363_364IL>IL	GLI3_uc011kbg.1_Silent_p.304_305IL>IL	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	363_364					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TGTCGGCTTAGGATCTGCTGAT	0.54									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				11	53					0	0	6.4e-05	0	0
HECW1	23072	broad.mit.edu	37	7	43506080	43506080	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:43506080C>A	uc003tid.1	+	15	3431	c.2826C>A	c.(2824-2826)AAC>AAA	p.N942K	HECW1_uc011kbi.1_Missense_Mutation_p.N908K	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	942					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CTCCAGTGAACTCACAAAAAA	0.453													28	55					2.4375e-19	8.66601e-19	0.00127121	1	0
BLVRA	644	broad.mit.edu	37	7	43846743	43846743	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:43846743C>T	uc003tir.2	+	8	883	c.800C>T	c.(799-801)TCT>TTT	p.S267F	BLVRA_uc010kxv.2_Missense_Mutation_p.S267F	NM_000712	NP_000703	P53004	BIEA_HUMAN	biliverdin reductase A precursor	267					heme catabolic process	cytosol	biliverdin reductase activity|zinc ion binding			ovary(1)	1					NADH(DB00157)	GGCCAGTTCTCTGAGAAGGAA	0.433													19	39					0	0	0.00074312	0	0
GCK	2645	broad.mit.edu	37	7	44228525	44228525	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:44228525C>T	uc003tkl.2	-	1	498	c.28G>A	c.(28-30)GCC>ACC	p.A10T		NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	10					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding	p.A10V(1)		skin(3)|lung(1)	4						TTCTTGGCGGCCTCCATCCTG	0.562													50	327					0	0	0.000781405	0	0
CAMK2B	816	broad.mit.edu	37	7	44281908	44281908	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:44281908G>A	uc003tkq.2	-	10	938	c.728C>T	c.(727-729)CCT>CTT	p.P243L	CAMK2B_uc003tkp.2_Missense_Mutation_p.P243L|CAMK2B_uc003tkx.2_Missense_Mutation_p.P243L|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Missense_Mutation_p.P243L|CAMK2B_uc003tks.2_Missense_Mutation_p.P243L|CAMK2B_uc003tku.2_Missense_Mutation_p.P243L|CAMK2B_uc003tkv.2_Missense_Mutation_p.P243L|CAMK2B_uc003tkt.2_Missense_Mutation_p.P243L|CAMK2B_uc003tkw.2_Missense_Mutation_p.P243L|CAMK2B_uc010kyc.2_Missense_Mutation_p.P243L	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	243	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						TTTGGCTTCAGGAGTGACGGT	0.612													32	77					0	0	0.000953801	0	0
NPC1L1	29881	broad.mit.edu	37	7	44571777	44571777	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:44571777C>T	uc003tlb.2	-	9	2505	c.2449G>A	c.(2449-2451)GAG>AAG	p.E817K	NPC1L1_uc003tlc.2_Missense_Mutation_p.E817K|NPC1L1_uc011kbw.1_Missense_Mutation_p.E817K	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	817	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GGGGGCAGCTCCTGGGGCTTG	0.642													20	98					0	0	0.00229938	0	0
ABCA13	154664	broad.mit.edu	37	7	48316016	48316016	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:48316016G>A	uc003toq.2	+	17	6778	c.6753G>A	c.(6751-6753)AGG>AGA	p.R2251R	ABCA13_uc010kyr.2_Silent_p.R1754R	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2251					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AAACTAGTAGGAAAACAGTTC	0.338													6	23					0	0	0.00116845	0	0
GRB10	2887	broad.mit.edu	37	7	50672025	50672025	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:50672025G>A	uc003tpi.2	-	13	1470	c.1439C>T	c.(1438-1440)CCT>CTT	p.P480L	GRB10_uc003tph.3_Missense_Mutation_p.P422L|GRB10_uc003tpj.2_Missense_Mutation_p.P434L|GRB10_uc003tpk.2_Missense_Mutation_p.P480L|GRB10_uc010kzb.2_Missense_Mutation_p.P422L|GRB10_uc003tpl.2_Missense_Mutation_p.P474L|GRB10_uc003tpm.2_Missense_Mutation_p.P422L|GRB10_uc003tpn.2_Missense_Mutation_p.P422L	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	480					insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					TAGGGTAGAAGGGTGGAGGGG	0.493									Russell-Silver_syndrome				33	87					0	0	0.00128727	0	0
ZNF716	441234	broad.mit.edu	37	7	57528830	57528830	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:57528830C>T	uc011kdi.1	+	4	775	c.663C>T	c.(661-663)TCC>TCT	p.S221S		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						GTGGCAAATCCTTTAACTGCT	0.383													4	5					0	0	0.00024832	0	0
RABGEF1	27342	broad.mit.edu	37	7	66103239	66103239	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:66103239G>A	uc003tvf.2	+	2	307	c.-887_splice	c.e2-1		KCTD7_uc003tvd.3_Splice_Site_p.G105_splice|KCTD7_uc003tve.2_Splice_Site_p.G105_splice	NM_014504	NP_055319	Q9UJ41	RABX5_HUMAN	RAB guanine nucleotide exchange factor (GEF) 1						endocytosis|protein transport	early endosome|recycling endosome	DNA binding|protein binding|zinc ion binding			ovary(1)	1						TTCCTGCTTAGAGATGTGCTG	0.527													30	84					0	0	0.000692331	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658121	72658121	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:72658121G>A	uc003txs.1	-	13	1791	c.863C>T	c.(862-864)TCC>TTC	p.S288F	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ccagttcacggacttcactac	0													11	62					0	0	0.000958276	0	0
BAZ1B	9031	broad.mit.edu	37	7	72856562	72856563	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:72856562_72856563GG>AA	uc003tyc.2	-	19	4760_4761	c.4415_4416CC>TT	c.(4414-4416)GCC>GTT	p.A1472V		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	1472					ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				ACTGTCCAACGGCCTCTGGCTC	0.589													89	202					0	0	6.4e-05	0	0
CLIP2	7461	broad.mit.edu	37	7	73803525	73803525	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:73803525C>T	uc003uam.2	+	13	2983	c.2656C>T	c.(2656-2658)CGG>TGG	p.R886W	CLIP2_uc003uan.2_Missense_Mutation_p.R851W	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	886	Potential.					microtubule associated complex				skin(3)	3						GACCGTGTCCCGGAAGACCCA	0.672													8	28					0	0	0.000157383	0	0
GTF2IRD2	84163	broad.mit.edu	37	7	74212027	74212027	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:74212027G>A	uc003ubd.1	-	16	2008	c.1824C>T	c.(1822-1824)ATC>ATT	p.I608I	GTF2IRD2_uc010lbt.1_Silent_p.I155I	NM_173537	NP_775808	Q86UP8	GTD2A_HUMAN	GTF2I repeat domain containing 2	608					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						tcgaccagtcgatacagaact	0													10	40					0	0	0.00209593	0	0
POR	5447	broad.mit.edu	37	7	75615739	75615739	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:75615739G>A	uc003udy.2	+	16	2065	c.1983G>A	c.(1981-1983)GCG>GCA	p.A661A	POR_uc011kgc.1_Silent_p.A469A|POR_uc011kgd.1_Missense_Mutation_p.R567Q|POR_uc011kge.1_Silent_p.A399A|POR_uc003uea.2_Silent_p.A148A	NM_000941	NP_000932	P16435	NCPR_HUMAN	cytochrome P450 reductase	658					cellular organofluorine metabolic process|positive regulation of monooxygenase activity	endoplasmic reticulum membrane	iron ion binding|NADPH-hemoprotein reductase activity			central_nervous_system(1)	1					Benzphetamine(DB00865)|Daunorubicin(DB00694)|Lipoic Acid(DB00166)|Menadione(DB00170)|Methoxyflurane(DB01028)|Mitomycin(DB00305)|Nilutamide(DB00665)	ACGCGCAGGCGGTGGACTACA	0.637													13	36					0	0	0.00185496	0	0
CCDC146	57639	broad.mit.edu	37	7	76903933	76903933	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:76903933A>T	uc003uga.2	+	11	1531	c.1404A>T	c.(1402-1404)GAA>GAT	p.E468D	CCDC146_uc010ldp.2_Missense_Mutation_p.E182D	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	468										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				AAATTGATGAAAAGGAACAAA	0.358													11	26					0	0	0.000308642	0	0
PTPN12	5782	broad.mit.edu	37	7	77268027	77268027	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:77268027C>T	uc003ugh.2	+	17	2351	c.2260C>T	c.(2260-2262)CCA>TCA	p.P754S	PTPN12_uc011kgp.1_Missense_Mutation_p.P635S|PTPN12_uc011kgq.1_Missense_Mutation_p.P624S|PTPN12_uc010lds.2_Missense_Mutation_p.P486S	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type	754						soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						ATCAGAAAATCCAACAGAAGC	0.353													44	122					0	0	0.000781405	0	0
CACNA2D1	781	broad.mit.edu	37	7	81714125	81714125	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:81714125C>T	uc003uhr.1	-	7	874	c.618G>A	c.(616-618)CAG>CAA	p.Q206Q		NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	206	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	TGCCAAAAACCTGCCACAATA	0.408													15	59					0	0	0.000422831	0	0
PCLO	27445	broad.mit.edu	37	7	82545732	82545732	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:82545732C>T	uc003uhx.2	-	7	11859	c.11570G>A	c.(11569-11571)AGA>AAA	p.R3857K	PCLO_uc003uhv.2_Missense_Mutation_p.R3857K|PCLO_uc010lec.2_Missense_Mutation_p.R822K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3788					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGGAGCAGTTCTTGGTCGCTC	0.468													58	87					0	0	0.000781405	0	0
PCLO	27445	broad.mit.edu	37	7	82580373	82580373	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:82580373C>T	uc003uhx.2	-	6	9820	c.9531G>A	c.(9529-9531)ACG>ACA	p.T3177T	PCLO_uc003uhv.2_Silent_p.T3177T|PCLO_uc010lec.2_Silent_p.T142T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3108					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGAGTCTATCGTCTCAGCAG	0.413													9	19					0	0	0.000442599	0	0
PCLO	27445	broad.mit.edu	37	7	82581953	82581953	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:82581953T>C	uc003uhx.2	-	5	8605	c.8316A>G	c.(8314-8316)CAA>CAG	p.Q2772Q	PCLO_uc003uhv.2_Silent_p.Q2772Q|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2703					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TAATAGAGGGTTGGACAGCAC	0.388													13	59					0	0	0.00244969	0	0
PCLO	27445	broad.mit.edu	37	7	82586143	82586143	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:82586143C>T	uc003uhx.2	-	5	4415	c.4126G>A	c.(4126-4128)GAA>AAA	p.E1376K	PCLO_uc003uhv.2_Missense_Mutation_p.E1376K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1307					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTGGAATTTCACCAAGTGAG	0.443													17	35					0	0	0.000422831	0	0
PCLO	27445	broad.mit.edu	37	7	82784618	82784618	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:82784618C>T	uc003uhx.2	-	2	1628	c.1339G>A	c.(1339-1341)GGA>AGA	p.G447R	PCLO_uc003uhv.2_Missense_Mutation_p.G447R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	398	Gln-rich.|Pro-rich.|10 X 10 AA tandem approximate repeats of P-A-K-P-Q-P-Q-Q-P-X.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGAATCTTTCCTGGCCCAGGC	0.592													18	57					0	0	0.00074312	0	0
SEMA3D	223117	broad.mit.edu	37	7	84685101	84685101	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:84685101G>A	uc003uic.2	-	7	833	c.793C>T	c.(793-795)CGT>TGT	p.R265C	SEMA3D_uc010led.2_Missense_Mutation_p.R265C|SEMA3D_uc010lee.1_Missense_Mutation_p.R265C	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	265	Sema.				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						GATGATTCACGAAAGAAGAAA	0.318													21	64					0	0	0.00188189	0	0
GRM3	2913	broad.mit.edu	37	7	86479764	86479764	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:86479764C>T	uc003uid.2	+	5	3569	c.2470C>T	c.(2470-2472)CAC>TAC	p.H824Y	GRM3_uc010lef.2_Missense_Mutation_p.S466L|GRM3_uc010leg.2_Missense_Mutation_p.H696Y|GRM3_uc010leh.2_Missense_Mutation_p.H416Y	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	824	Helical; Name=7; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ACCCAAGGTTCACATCATCCT	0.493													11	21					0	0	0.000673444	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964370	88964370	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:88964370G>A	uc011khi.1	+	4	2612	c.2074G>A	c.(2074-2076)GGA>AGA	p.G692R		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	692						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TTCCGGATGTGGAAACCAAAG	0.448										HNSCC(36;0.09)			10	14					0	0	0.000442599	0	0
KRIT1	889	broad.mit.edu	37	7	91863814	91863814	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:91863814G>A	uc003ulq.1	-	8	1109	c.938C>T	c.(937-939)TCA>TTA	p.S313L	KRIT1_uc010lev.1_Missense_Mutation_p.S106L|KRIT1_uc003ulr.1_Missense_Mutation_p.S313L|KRIT1_uc003uls.1_Missense_Mutation_p.S313L|KRIT1_uc003ult.1_Intron|KRIT1_uc003ulu.1_Missense_Mutation_p.S313L|KRIT1_uc003ulv.1_Missense_Mutation_p.S313L	NM_194456	NP_919438	O00522	KRIT1_HUMAN	krev interaction trapped 1 isoform 1	313	ANK 1.				angiogenesis|cell redox homeostasis|negative regulation of angiogenesis|negative regulation of endothelial cell apoptosis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|regulation of establishment of cell polarity|small GTPase mediated signal transduction	cell-cell junction|cytoskeleton	protein binding|small GTPase regulator activity			ovary(2)|lung(1)	3	all_cancers(62;1.04e-09)|all_epithelial(64;5.75e-09)|Breast(17;0.00206)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CTGGTTGACTGAAAATCTTTC	0.383									Familial_Cerebral_Cavernous_Angioma				21	79					0	0	0.00278032	0	0
CDK6	1021	broad.mit.edu	37	7	92354975	92354975	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:92354975G>C	uc011khw.1	-	4	914	c.502C>G	c.(502-504)CGC>GGC	p.R168G	CDK6_uc010lez.2_Missense_Mutation_p.R168G	NM_001259	NP_001250	Q00534	CDK6_HUMAN	cyclin-dependent kinase 6	168	Protein kinase.				cell dedifferentiation|cell division|G1 phase of mitotic cell cycle|gliogenesis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|negative regulation of osteoblast differentiation|positive regulation of cell-matrix adhesion|positive regulation of fibroblast proliferation|regulation of erythrocyte differentiation|regulation of gene expression|response to virus	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleus|ruffle	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			central_nervous_system(1)|skin(1)	2	all_cancers(62;8.72e-12)|all_epithelial(64;3.65e-10)|Breast(17;0.000675)|all_lung(186;0.0392)|Lung NSC(181;0.053)|all_neural(327;0.219)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;1.2e-06)|all cancers(6;3.1e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			CTATAGATGCGGGCAAGGCCG	0.448			T	MLLT10	ALL								3	72					0	0	6.4e-05	0	0
SAMD9L	219285	broad.mit.edu	37	7	92760610	92760610	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:92760610C>T	uc003umh.1	-	5	5891	c.4675G>A	c.(4675-4677)GGT>AGT	p.G1559S	SAMD9L_uc003umj.1_Missense_Mutation_p.G1559S|SAMD9L_uc003umi.1_Missense_Mutation_p.G1559S|SAMD9L_uc010lfb.1_Missense_Mutation_p.G1559S|SAMD9L_uc003umk.1_Missense_Mutation_p.G1559S|SAMD9L_uc010lfc.1_Missense_Mutation_p.G1559S|SAMD9L_uc010lfd.1_Missense_Mutation_p.G1559S|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1559										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			ATGTTCCTACCACTTCTGAGT	0.373													7	22					0	0	0.00198382	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761569	92761569	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:92761569G>A	uc003umh.1	-	5	4932	c.3716C>T	c.(3715-3717)CCT>CTT	p.P1239L	SAMD9L_uc003umj.1_Missense_Mutation_p.P1239L|SAMD9L_uc003umi.1_Missense_Mutation_p.P1239L|SAMD9L_uc010lfb.1_Missense_Mutation_p.P1239L|SAMD9L_uc003umk.1_Missense_Mutation_p.P1239L|SAMD9L_uc010lfc.1_Missense_Mutation_p.P1239L|SAMD9L_uc010lfd.1_Missense_Mutation_p.P1239L|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1239										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GGGATCAGGAGGAATGGTCCA	0.348													8	37					0	0	0.000442599	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92844816	92844816	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:92844816G>A	uc003umm.2	-	3	636	c.613C>T	c.(613-615)CAT>TAT	p.H205Y	HEPACAM2_uc003uml.2_Missense_Mutation_p.H193Y|HEPACAM2_uc010lff.2_Missense_Mutation_p.H193Y|HEPACAM2_uc011khy.1_Missense_Mutation_p.H228Y	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	205	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						GGAGCAATATGAAGGGTATTG	0.468													21	26					0	0	0.000586117	0	0
CALCR	799	broad.mit.edu	37	7	93065362	93065362	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:93065362G>A	uc003umv.1	-	13	1414	c.1153C>T	c.(1153-1155)CTG>TTG	p.L385L	CALCR_uc011kia.1_Silent_p.L165L|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.L351L|CALCR_uc003umw.2_Silent_p.L351L	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	367	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	ATTCCCAGCAGGGGCACAAGG	0.498													11	44					0	0	0.000673444	0	0
PON3	5446	broad.mit.edu	37	7	94993217	94993217	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:94993217C>T	uc003unt.2	-	6	678	c.653G>A	c.(652-654)GGA>GAA	p.G218E	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Missense_Mutation_p.G266E	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	218					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			ACTACAAAATCCTTTGGCCAC	0.428													23	127					0	0	0.00178596	0	0
TMEM130	222865	broad.mit.edu	37	7	98445712	98445712	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:98445712G>A	uc003upo.2	-	8	1464	c.1275C>T	c.(1273-1275)CCC>CCT	p.P425P	TMEM130_uc011kiq.1_Silent_p.P394P|TMEM130_uc011kir.1_Silent_p.P413P|TMEM130_uc003upn.2_Silent_p.P311P	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	425	Cytoplasmic (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACTTATAGAGGGGCGGGAGCA	0.557													8	58					0	0	0.000673444	0	0
TMEM130	222865	broad.mit.edu	37	7	98460902	98460902	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:98460902G>A	uc003upo.2	-	2	396	c.207C>T	c.(205-207)CTC>CTT	p.L69L	TMEM130_uc011kiq.1_Silent_p.L50L|TMEM130_uc011kir.1_Silent_p.L69L|TMEM130_uc003upn.2_Intron	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	69	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGAAGCGGTAGAGGTGGGCGT	0.667													9	34					0	0	0.000442599	0	0
GJC3	349149	broad.mit.edu	37	7	99521176	99521176	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:99521176C>T	uc011kjd.1	-	2	832	c.832G>A	c.(832-834)GAT>AAT	p.D278N		NM_181538	NP_853516	Q8NFK1	CXG3_HUMAN	gap junction protein, gamma 3, 30.2kDa	278	Cytoplasmic (Potential).					connexon complex|integral to membrane				ovary(1)	1	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					actcaggcatctctgggtcca	0													42	92					0	0	0.000781405	0	0
STAG3	10734	broad.mit.edu	37	7	99800132	99800133	+	Silent	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:99800132_99800133CC>TT	uc003utx.1	+	25	2774_2775	c.2619_2620CC>TT	c.(2617-2622)CTCCTA>CTTTTA	p.873_874LL>LL	STAG3_uc011kjk.1_Silent_p.815_816LL>LL|GATS_uc003uty.3_RNA|GATS_uc003utz.3_RNA|GATS_uc003uua.3_3'UTR|GATS_uc010lgt.2_RNA|STAG3_uc003uub.1_Silent_p.97_98LL>LL	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	873_874					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGCGCCGCCTCCTAGCCGGGTT	0.525													66	139					0	0	6.4e-05	0	0
MUC17	140453	broad.mit.edu	37	7	100681473	100681473	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:100681473C>T	uc003uxp.1	+	3	6829	c.6776C>T	c.(6775-6777)TCA>TTA	p.S2259L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2259	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|36.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGCCACTTCATCTCCTACA	0.507													32	171					0	0	0.00111076	0	0
MUC17	140453	broad.mit.edu	37	7	100683264	100683264	+	Missense_Mutation	SNP	G	A	A	rs149735729	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:100683264G>A	uc003uxp.1	+	3	8620	c.8567G>A	c.(8566-8568)GGT>GAT	p.G2856D	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2856	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|46.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACTGCTGAAGGTATCGTCGTG	0.507													77	163					0	0	0.000781405	0	0
MUC17	140453	broad.mit.edu	37	7	100685010	100685010	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:100685010C>T	uc003uxp.1	+	3	10366	c.10313C>T	c.(10312-10314)TCA>TTA	p.S3438L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3438	Extracellular (Potential).|Ser-rich.|56.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGCCAGTTCATCTCCTACA	0.517													32	122					0	0	0.000692331	0	0
MUC17	140453	broad.mit.edu	37	7	100685015	100685015	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:100685015C>T	uc003uxp.1	+	3	10371	c.10318C>T	c.(10318-10320)CCT>TCT	p.P3440S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3440	Extracellular (Potential).|Ser-rich.|56.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAGTTCATCTCCTACAATCGC	0.512													44	110					0	0	0.000781405	0	0
SPDYE6	729597	broad.mit.edu	37	7	101989086	101989086	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:101989086C>T	uc011kkp.1	-	6	1208	c.787G>A	c.(787-789)GAG>AAG	p.E263K	SPDYE6_uc003uzb.2_Missense_Mutation_p.E119K	NM_001146210	NP_001139682	P0CI01	SPDE6_HUMAN	speedy homolog E6	263											0						TTGGAGTCCTCGTCGTCCTCC	0.547													13	380					0	0	0.000720815	0	0
DNAJC2	27000	broad.mit.edu	37	7	102956471	102956471	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:102956471C>T	uc003vbo.2	-	14	1743	c.1492G>A	c.(1492-1494)GAT>AAT	p.D498N	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_Missense_Mutation_p.D123N|DNAJC2_uc010lix.2_Missense_Mutation_p.D445N|DNAJC2_uc003vbp.2_Missense_Mutation_p.D123N	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	498	SANT 1.				'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						CCAATAACATCTTTGGCAGTT	0.303													5	70					0	0	0.00116845	0	0
RELN	5649	broad.mit.edu	37	7	103214583	103214584	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:103214583_103214584CC>TT	uc003vca.2	-	30	4626_4627	c.4466_4467GG>AA	c.(4465-4467)GGG>GAA	p.G1489E	RELN_uc010liz.2_Missense_Mutation_p.G1489E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1489					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTTCCCTTTTCCCAGGGCCATT	0.47													35	119					0	0	6.4e-05	0	0
CDHR3	222256	broad.mit.edu	37	7	105656392	105656392	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:105656392C>T	uc003vdl.3	+	11	1455	c.1347C>T	c.(1345-1347)ATC>ATT	p.I449I	CDHR3_uc003vdk.2_Silent_p.I97I|CDHR3_uc003vdm.3_Silent_p.I436I|CDHR3_uc011klt.1_Silent_p.I361I|CDHR3_uc003vdn.2_Silent_p.I166I	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	449	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						ACGTTTATATCCTAACAAGCC	0.299													8	30					0	0	0.000673444	0	0
HBP1	26959	broad.mit.edu	37	7	106840715	106840715	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:106840715C>T	uc003vdy.2	+	10	1682	c.1496C>T	c.(1495-1497)CCT>CTT	p.P499L	HBP1_uc011klv.1_Missense_Mutation_p.P509L|HBP1_uc003vdz.2_Missense_Mutation_p.P499L|HBP1_uc003veb.1_Missense_Mutation_p.P499L	NM_012257	NP_036389	O60381	HBP1_HUMAN	HMG-box transcription factor 1	499	HMG box.				cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			skin(1)	1						CGTTTAAATCCTGACTGTTGG	0.388													9	58					0	0	0.000673444	0	0
DUS4L	11062	broad.mit.edu	37	7	107211656	107211656	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:107211656C>T	uc003veh.2	+	4	516	c.183C>T	c.(181-183)GCC>GCT	p.A61A	DUS4L_uc003veg.2_5'UTR|DUS4L_uc011klw.1_RNA|DUS4L_uc011klx.1_5'UTR	NM_181581	NP_853559	O95620	DUS4L_HUMAN	dihydrouridine synthase 4-like	61					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0						TGATTGTTGCCGCTGATTTTG	0.338													25	53					0	0	0.000720815	0	0
NRCAM	4897	broad.mit.edu	37	7	107820675	107820675	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:107820675G>A	uc003vfb.2	-	25	3314	c.2843C>T	c.(2842-2844)CCA>CTA	p.P948L	NRCAM_uc003vfc.2_Missense_Mutation_p.P932L|NRCAM_uc011kmk.1_Missense_Mutation_p.P943L|NRCAM_uc003vfd.2_Missense_Mutation_p.P924L|NRCAM_uc003vfe.2_Missense_Mutation_p.P924L	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	948	Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						ACCTCCTTCTGGAGTATTAAA	0.507													10	48					0	0	0.00136819	0	0
MET	4233	broad.mit.edu	37	7	116409747	116409747	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:116409747G>A	uc003vij.2	+	12	2819	c.2632G>A	c.(2632-2634)GGA>AGA	p.G878R	MET_uc010lkh.2_Missense_Mutation_p.G896R|MET_uc011knj.1_Missense_Mutation_p.G448R	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	878	Extracellular (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GTTAAAAGTTGGAAATAAGAG	0.378			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				10	54					0	0	0.000978159	0	0
CFTR	1080	broad.mit.edu	37	7	117307070	117307070	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:117307070C>T	uc003vjd.2	+	27	4483	c.4351C>T	c.(4351-4353)CCC>TCC	p.P1451S	CFTR_uc011knq.1_Missense_Mutation_p.P857S	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1451	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GAAGCTCTTTCCCCACCGGAA	0.532									Cystic_Fibrosis				6	14					0	0	0.00198382	0	0
KCND2	3751	broad.mit.edu	37	7	119915781	119915781	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:119915781C>T	uc003vjj.1	+	1	2060	c.1095C>T	c.(1093-1095)ATC>ATT	p.I365I		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	365					regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GGTATACCATCGTCACCATGA	0.507													16	59					0	0	0.000958276	0	0
KCND2	3751	broad.mit.edu	37	7	120373011	120373011	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:120373011T>A	uc003vjj.1	+	2	2135	c.1170T>A	c.(1168-1170)TGT>TGA	p.C390*		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	390	Helical; Name=Segment S6; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GTTCTATCTGTTCGCTGAGTG	0.413													8	41					0	0	0.000274275	0	0
C7orf58	79974	broad.mit.edu	37	7	120737752	120737752	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:120737752G>A	uc003vjq.3	+	6	1064	c.617_splice	c.e6-1	p.E206_splice	C7orf58_uc003vjr.1_Splice_Site_p.E206_splice|C7orf58_uc003vjs.3_Splice_Site_p.E206_splice|C7orf58_uc003vjt.3_Splice_Site|C7orf58_uc010lkk.1_Splice_Site	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1							endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AATCTTTTCAGAACTGCAACT	0.408													10	59					0	0	0.00136819	0	0
AASS	10157	broad.mit.edu	37	7	121753694	121753694	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:121753694G>A	uc003vka.2	-	9	1220	c.1124C>T	c.(1123-1125)CCC>CTC	p.P375L	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Missense_Mutation_p.P375L|AASS_uc011knw.1_Intron	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	375	Lysine-ketoglutarate reductase.				protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	CATGCAAAAGGGATGCTCTAT	0.368													26	40					0	0	0.000720815	0	0
IQUB	154865	broad.mit.edu	37	7	123101558	123101558	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:123101558G>A	uc003vkn.2	-	11	2437	c.1860C>T	c.(1858-1860)CGC>CGT	p.R620R	IQUB_uc011kny.1_5'UTR|IQUB_uc003vko.2_Silent_p.R620R|IQUB_uc010lkt.2_RNA	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	620										ovary(3)|large_intestine(1)	4						GGTATATGCGGCGTGAGGTGG	0.378													5	11					0	0	0.000602214	0	0
ASB15	142685	broad.mit.edu	37	7	123269251	123269251	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:123269251C>T	uc003vku.1	+	10	1495	c.1203C>T	c.(1201-1203)TCC>TCT	p.S401S	ASB15_uc003vkw.1_Silent_p.S401S	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	401	ANK 8.				intracellular signal transduction					skin(2)|lung(1)	3						TGCTTCTCTCCCATGGAGCTA	0.443													35	57					0	0	0.0024448	0	0
GRM8	2918	broad.mit.edu	37	7	126882981	126882981	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:126882981A>G	uc003vlr.2	-	1	589	c.278T>C	c.(277-279)CTT>CCT	p.L93P	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.L93P|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	93	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GATGTTGGAAAGGAGATCAGG	0.498										HNSCC(24;0.065)			9	16					0	0	0.000442599	0	0
SND1	27044	broad.mit.edu	37	7	127343259	127343259	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:127343259C>T	uc003vmi.2	+	7	948	c.722C>T	c.(721-723)CCA>CTA	p.P241L		NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	241	TNase-like 2.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						AGTGAAACTCCAGAGCCTTTT	0.488													30	61					0	0	0.00058488	0	0
FLNC	2318	broad.mit.edu	37	7	128483361	128483361	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:128483361C>T	uc003vnz.3	+	17	2838	c.2629C>T	c.(2629-2631)CTG>TTG	p.L877L	FLNC_uc003voa.3_Silent_p.L877L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	877	Filamin 7.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGGCCCTGGGCTGAATCGCAC	0.642													11	15					0	0	0.000978159	0	0
FLNC	2318	broad.mit.edu	37	7	128484164	128484164	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:128484164C>T	uc003vnz.3	+	20	3245	c.3036C>T	c.(3034-3036)CCC>CCT	p.P1012P	FLNC_uc003voa.3_Silent_p.P1012P	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1012	Filamin 8.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGCCCATCCCCTGCAAGCTGG	0.642													4	42					0	0	0.000602214	0	0
SMO	6608	broad.mit.edu	37	7	128845101	128845101	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:128845101C>T	uc003vor.2	+	3	875	c.595C>T	c.(595-597)CGG>TGG	p.R199W	SMO_uc003vos.2_5'Flank	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	199	Extracellular (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding	p.R199W(2)		skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						GCCCTTGGTTCGGACAGACAA	0.582			Mis		skin basal cell 								16	34					0	0	0.000958276	0	0
PLXNA4	91584	broad.mit.edu	37	7	131866140	131866140	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:131866140C>T	uc003vra.3	-	18	3721	c.3492G>A	c.(3490-3492)AAG>AAA	p.K1164K		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1164	IPT/TIG 4.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CTCACTCCACCTTTAGGATGA	0.567													42	121					0	0	0.000781405	0	0
PLXNA4	91584	broad.mit.edu	37	7	131912289	131912289	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:131912289C>T	uc003vra.3	-	7	2032	c.1803G>A	c.(1801-1803)ATG>ATA	p.M601I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	601	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCAGCCCATCCATCTCTGACA	0.607													14	39					0	0	0.000422831	0	0
LRGUK	136332	broad.mit.edu	37	7	133842793	133842793	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:133842793G>A	uc003vrm.1	+	6	692	c.676G>A	c.(676-678)GAG>AAG	p.E226K		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	226	LRR 5.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						TATAGGCAATGAGATAGAAGA	0.348													19	58					0	0	0.00188189	0	0
DGKI	9162	broad.mit.edu	37	7	137206693	137206693	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:137206693G>A	uc003vtt.2	-	21	2168	c.2167C>T	c.(2167-2169)CGT>TGT	p.R723C	DGKI_uc003vtu.2_Missense_Mutation_p.R423C	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	723					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						ATCCTCAGACGATCTGGGACA	0.463													4	10					0	0	0.00116845	0	0
DGKI	9162	broad.mit.edu	37	7	137374695	137374695	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:137374695C>T	uc003vtt.2	-	2	456	c.455G>A	c.(454-456)AGC>AAC	p.S152N	DGKI_uc003vtu.2_Intron	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	152					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CACAGGAAGGCTGAGGGGATG	0.453													8	62					0	0	0.000978159	0	0
TTC26	79989	broad.mit.edu	37	7	138872190	138872190	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:138872190C>T	uc003vus.2	+	17	1572	c.1458C>T	c.(1456-1458)GTC>GTT	p.V486V	TTC26_uc011kqn.1_Intron|TTC26_uc011kqo.1_Silent_p.V455V|TTC26_uc011kqp.1_Silent_p.V381V|TTC26_uc003vut.2_Silent_p.V346V|TTC26_uc011kqq.1_Silent_p.V355V	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	486	TPR 4.						binding			ovary(1)	1						CTTTTGATGTCCTTGAGAGGC	0.448													57	118					0	0	0.000781405	0	0
TBXAS1	6916	broad.mit.edu	37	7	139717612	139717613	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:139717612_139717613CC>TT	uc011kqv.1	+	13	1811_1812	c.1647_1648CC>TT	c.(1645-1650)TTCCAA>TTTTAA	p.Q550*	TBXAS1_uc003vvh.2_Nonsense_Mutation_p.Q504*|TBXAS1_uc010lne.2_Nonsense_Mutation_p.Q436*|TBXAS1_uc003vvi.2_Nonsense_Mutation_p.Q504*|TBXAS1_uc003vvj.2_Intron|TBXAS1_uc011kqw.1_Nonsense_Mutation_p.Q484*	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	503	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					AGTTCCGGTTCCAAGCCTGCCC	0.644													30	73					0	0	6.4e-05	0	0
PRSS37	136242	broad.mit.edu	37	7	141537045	141537045	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:141537045C>T	uc003vws.1	-	4	806	c.434G>A	c.(433-435)CGA>CAA	p.R145Q	PRSS37_uc011krk.1_Missense_Mutation_p.R132Q|PRSS37_uc011krl.1_Missense_Mutation_p.R144Q|PRSS37_uc003vwt.1_Missense_Mutation_p.R132Q	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	145	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						GTCAGGGTGTCGGCCTGAGGG	0.468													29	55					0	0	0.000814825	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672504	141672504	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:141672504G>A	uc003vwx.1	-	1	1070	c.986C>T	c.(985-987)TCC>TTC	p.S329F		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	329	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					CAGTGTCCGGGAATCTGCCTT	0.478													12	40					0	0	0.000566183	0	0
MGAM	8972	broad.mit.edu	37	7	141752693	141752693	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:141752693C>T	uc003vwy.2	+	26	3122	c.3068C>T	c.(3067-3069)TCT>TTT	p.S1023F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1023	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCCTTAAAGTCTTCCGTTTAT	0.463													33	62					0	0	0.00058488	0	0
MGAM	8972	broad.mit.edu	37	7	141802445	141802445	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:141802445G>A	uc003vwy.2	+	46	5345	c.5291G>A	c.(5290-5292)GGA>GAA	p.G1764E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1764	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TATGGGAAAGGACTCTATTAC	0.413													5	21					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	7	142001083	142001083	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:142001083G>A	uc011kro.1	+	2	220	c.175G>A	c.(175-177)GGG>AGG	p.G59R						SubName: Full=V_segment translation product; Flags: Fragment;																		ACAAATCTTGGGGCAGAAAGT	0.418													10	18					0	0	0.000673444	0	0
PRSS1	5644	broad.mit.edu	37	7	142458471	142458471	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:142458471C>T	uc003wak.2	+	2	123	c.106C>T	c.(106-108)CCC>TCC	p.P36S	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	36	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			GAATTCTGTCCCCTACCAGGT	0.527									Hereditary_Pancreatitis				6	106					0	0	0.00198382	0	0
TRY6	154754	broad.mit.edu	37	7	142479974	142479974	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:142479974C>T	uc011ksq.1	+	2	189	c.106C>T	c.(106-108)CCC>TCC	p.P36S	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						GAATTCTGTCCCCTACCAGGT	0.547													9	121					0	0	0.000673444	0	0
TRPV6	55503	broad.mit.edu	37	7	142572886	142572886	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:142572886C>T	uc003wbx.1	-	9	1370	c.1154G>A	c.(1153-1155)CGG>CAG	p.R385Q	TRPV6_uc003wbw.1_Missense_Mutation_p.R171Q|TRPV6_uc010lou.1_Missense_Mutation_p.R256Q	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	385	Extracellular (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CCCGACCAGCCGGATATCGTC	0.562													30	59					0	0	0.00058488	0	0
TRPV5	56302	broad.mit.edu	37	7	142605774	142605774	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:142605774C>T	uc003wby.1	-	15	2360	c.2096G>A	c.(2095-2097)CGA>CAA	p.R699Q		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	699	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CTCCCAGCCTCGGTGACTGCT	0.557													9	46					0	0	0.000442599	0	0
TAS2R39	259285	broad.mit.edu	37	7	142881174	142881174	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:142881174G>A	uc011ksw.1	+	1	663	c.663G>A	c.(661-663)CTG>CTA	p.L221L		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	221	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					TGACTCCTCTGATCATGTTCA	0.502													13	60					0	0	0.00185496	0	0
CLCN1	1180	broad.mit.edu	37	7	143013335	143013335	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143013335G>A	uc003wcr.1	+	1	117	c.30G>A	c.(28-30)GGG>GGA	p.G10G	CLCN1_uc011ktc.1_5'UTR	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	10	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					AGCAGCGTGGGGGTGAACAAA	0.622													23	32					0	0	0.00229938	0	0
CLCN1	1180	broad.mit.edu	37	7	143047514	143047514	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143047514C>T	uc003wcr.1	+	21	2540	c.2453C>T	c.(2452-2454)TCC>TTC	p.S818F	CLCN1_uc011ktc.1_Missense_Mutation_p.S430F	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	818	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TGTTTTGATTCCTGCTGTATT	0.557													10	24					0	0	0.00185496	0	0
FAM131B	9715	broad.mit.edu	37	7	143053666	143053666	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143053666C>T	uc003wct.2	-	6	2682	c.976G>A	c.(976-978)GAG>AAG	p.E326K	FAM131B_uc010loz.2_Missense_Mutation_p.E294K|FAM131B_uc003wcu.3_Missense_Mutation_p.E326K|FAM131B_uc010lpa.2_Missense_Mutation_p.E354K	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	326											0	Melanoma(164;0.205)					TCGCCTTCCTCCTCATCAAAG	0.597													18	98					0	0	0.00121646	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141092	143141092	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143141092G>A	uc011ktg.1	+	1	547	c.547G>A	c.(547-549)GAT>AAT	p.D183N	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	183	Extracellular (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TGTCACTGGCGATAGCATACG	0.408													20	104					0	0	0.00152264	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141130	143141130	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143141130C>T	uc011ktg.1	+	1	585	c.585C>T	c.(583-585)TTC>TTT	p.F195F	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	195	Helical; Name=5; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TCTATCTCTTCCCTCTAAAAA	0.423													21	97					0	0	0.00278032	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141419	143141419	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143141419C>T	uc011ktg.1	+	1	874	c.874C>T	c.(874-876)CAC>TAC	p.H292Y	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	292	Cytoplasmic (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TGCAGCAGTTCACCCCATCAT	0.488													35	108					0	0	0.000814825	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175689	143175689	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143175689C>T	uc003wdc.1	+	1	724	c.724C>T	c.(724-726)CTT>TTT	p.L242F	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	242	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					CTTCCTCATTCTTTATGCTCT	0.512													9	76					0	0	0.000673444	0	0
OR2F2	135948	broad.mit.edu	37	7	143633090	143633090	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143633090G>A	uc011ktv.1	+	1	765	c.765G>A	c.(763-765)ACG>ACA	p.T255T		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					ACGGCACAACGATTTTCACTT	0.512													24	79					0	0	0.00106085	0	0
OR2A5	393046	broad.mit.edu	37	7	143747855	143747855	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143747855G>A	uc011ktw.1	+	1	361	c.361G>A	c.(361-363)GAT>AAT	p.D121N		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					GATGTCCTACGATCGGTACAT	0.468													42	104					0	0	0.00195071	0	0
OR2A25	392138	broad.mit.edu	37	7	143771857	143771857	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143771857C>T	uc011ktx.1	+	1	545	c.545C>T	c.(544-546)GCT>GTT	p.A182V		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GAAATTATGGCTGTTCTCAAA	0.448													24	148					0	0	0.000586117	0	0
OR2A12	346525	broad.mit.edu	37	7	143793110	143793110	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143793110C>T	uc011kty.1	+	1	910	c.910C>T	c.(910-912)CTT>TTT	p.L304F		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					AAAGAGAGTCCTTTGGAAACA	0.433													64	115					0	0	0.000781405	0	0
OR2A14	135941	broad.mit.edu	37	7	143826417	143826417	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143826417C>T	uc011kua.1	+	1	212	c.212C>T	c.(211-213)TCC>TTC	p.S71F		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GTTGACATATCCTATGCTTCC	0.453													33	152					0	0	0.000692331	0	0
OR2A7	401427	broad.mit.edu	37	7	143956059	143956059	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:143956059G>A	uc011kuc.1	-	1	663	c.663C>T	c.(661-663)CTC>CTT	p.L221L	OR2A9P_uc003wec.1_Intron|uc003wed.2_5'Flank	NM_001005328	NP_001005328	Q96R45	OR2A7_HUMAN	olfactory receptor, family 2, subfamily A,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.14)					GGATAGCACAGAGGATGCACA	0.488													11	125					0	0	0.00178596	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144077105	144077105	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:144077105C>T	uc003wel.2	+	15	4868	c.4750C>T	c.(4750-4752)CGA>TGA	p.R1584*	ARHGEF5_uc003wem.2_Nonsense_Mutation_p.R385*	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	1584					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					GGAAGCTCATCGAGTCAAGAC	0.547													15	106					0	0	0.000566183	0	0
NOBOX	135935	broad.mit.edu	37	7	144097286	144097286	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:144097286C>T	uc011kue.1	-	5	964	c.964G>A	c.(964-966)GGC>AGC	p.G322S		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	322	Homeobox.				cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					ACCAGTGAGCCGGCCCCCTTT	0.582													18	73					0	0	0.00188189	0	0
SSPO	23145	broad.mit.edu	37	7	149492727	149492727	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:149492727C>T	uc010lpk.2	+	44	6507	c.6507C>T	c.(6505-6507)CTC>CTT	p.L2169L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2169	F5/8 type C.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ATCGTGACCTCCTGCCTGGCA	0.592													66	181					0	0	0.000781405	0	0
ZNF862	643641	broad.mit.edu	37	7	149558181	149558181	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:149558181C>T	uc010lpn.2	+	7	2124	c.1932C>T	c.(1930-1932)ATC>ATT	p.I644I	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	644					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						GGATTTACATCCGCTACTTCA	0.587													11	9					0	0	0.000673444	0	0
LRRC61	65999	broad.mit.edu	37	7	150034029	150034029	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:150034029G>A	uc003wgv.2	+	3	753	c.79G>A	c.(79-81)GAG>AAG	p.E27K	LRRC61_uc003wgx.2_Missense_Mutation_p.E27K|LRRC61_uc003wgw.2_Missense_Mutation_p.E27K|LRRC61_uc003wgz.3_Missense_Mutation_p.E27K	NM_023942	NP_076431	Q9BV99	LRC61_HUMAN	leucine rich repeat containing 61	27											0			OV - Ovarian serous cystadenocarcinoma(82;0.011)			ACGCACAGGCGAGTTCTCCCT	0.637													32	66					0	0	0.00178596	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174770	150174770	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:150174770C>T	uc003whj.2	+	5	2230	c.1900C>T	c.(1900-1902)CCC>TCC	p.P634S		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	634	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTCCGGGTATCCCCATACACA	0.398													19	88					0	0	0.000958276	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217601	150217601	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:150217601G>A	uc003whk.2	+	2	669	c.539G>A	c.(538-540)AGT>AAT	p.S180N		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	180							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGAAGGAAAGTCAAGTGCAG	0.498													23	45					0	0	0.00188189	0	0
TMEM176B	28959	broad.mit.edu	37	7	150489175	150489175	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:150489175C>T	uc003wht.3	-	6	855	c.689G>A	c.(688-690)CGA>CAA	p.R230Q	TMEM176B_uc003whu.3_Missense_Mutation_p.R230Q|TMEM176B_uc003whv.3_Missense_Mutation_p.R193Q|TMEM176B_uc003whw.3_Missense_Mutation_p.R230Q	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	230					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACACAAGTTTCGAAGACCTAC	0.567													6	37					0	0	0.00198382	0	0
ABP1	26	broad.mit.edu	37	7	150555106	150555106	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:150555106C>T	uc003why.1	+	3	5766	c.1548C>T	c.(1546-1548)TAC>TAT	p.Y516Y	ABP1_uc003whz.1_Silent_p.Y516Y|ABP1_uc003wia.1_Silent_p.Y516Y	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	516					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TGGTGCACTACCGCGTAGACC	0.572													33	66					0	0	0.00148497	0	0
ABP1	26	broad.mit.edu	37	7	150558157	150558157	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:150558157C>T	uc003why.1	+	6	6334	c.2116C>T	c.(2116-2118)CCC>TCC	p.P706S	ABP1_uc003whz.1_Missense_Mutation_p.P706S|ABP1_uc003wia.1_Missense_Mutation_p.P725S	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	706					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CCCAGAGGACCCCTCCCTGGC	0.617													7	37					0	0	0.000442599	0	0
KCNH2	3757	broad.mit.edu	37	7	150649632	150649632	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:150649632C>T	uc003wic.2	-	6	1451	c.1438G>A	c.(1438-1440)GAG>AAG	p.E480K	KCNH2_uc003wib.2_Missense_Mutation_p.E140K|KCNH2_uc011kux.1_Missense_Mutation_p.E384K|KCNH2_uc003wid.2_Missense_Mutation_p.E140K|KCNH2_uc003wie.2_Missense_Mutation_p.E480K	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	480	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity	p.E480E(1)		skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	ACCACCTCCTCGTTGGCATTG	0.597													19	88					0	0	0.000586117	0	0
WDR86	349136	broad.mit.edu	37	7	151093145	151093146	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:151093145_151093146GG>AA	uc003wkb.2	-	3	891_892	c.442_443CC>TT	c.(442-444)CCG>TTG	p.P148L	WDR86_uc003wka.2_Missense_Mutation_p.P106L|WDR86_uc011kvk.1_Missense_Mutation_p.P148L|WDR86_uc003wkc.2_Missense_Mutation_p.P20L	NM_198285	NP_938026	Q86TI4	WDR86_HUMAN	WD repeat domain 86	148	WD 4.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00419)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGGTCCCACGGGGCAGAGTAG	0.693													12	19					0	0	6.4e-05	0	0
RHEB	6009	broad.mit.edu	37	7	151167708	151167708	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:151167708C>G	uc003wkh.1	-	7	824	c.411G>C	c.(409-411)TTG>TTC	p.L137F		NM_005614	NP_005605	Q15382	RHEB_HUMAN	Ras homolog enriched in brain precursor	137					cell cycle arrest|insulin receptor signaling pathway|positive regulation of TOR signaling cascade|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|metal ion binding|protein binding			large_intestine(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.00306)	UCEC - Uterine corpus endometrioid carcinoma (81;0.174)		AAGATTCTGCCAAAGCTTTCC	0.318													10	87					0	0	0.000673444	0	0
MLL3	58508	broad.mit.edu	37	7	151945093	151945093	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:151945093C>T	uc003wla.2	-	14	2645	c.2426G>A	c.(2425-2427)GGA>GAA	p.G809E		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	809					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CATGATGTTTCCAGCAGAGGA	0.448			N		medulloblastoma								19	465					0	0	0.00229938	0	0
DNAJB6	10049	broad.mit.edu	37	7	157175009	157175009	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:157175009C>T	uc003wnk.2	+	6	570	c.416C>T	c.(415-417)TCG>TTG	p.S139L	DNAJB6_uc003wnj.2_Missense_Mutation_p.S139L|DNAJB6_uc003wnl.2_Missense_Mutation_p.S126L|DNAJB6_uc011kvy.1_Missense_Mutation_p.S90L|DNAJB6_uc011kvz.1_Intron|DNAJB6_uc010lqt.2_Missense_Mutation_p.S139L	NM_058246	NP_490647	O75190	DNJB6_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 6	139	Gly/Phe-rich.|Interaction with HSP70.|Interaction with KRT18.				intermediate filament organization|negative regulation of caspase activity|protein folding|response to unfolded protein	nucleus|perinuclear region of cytoplasm	ATPase activator activity|chaperone binding|heat shock protein binding|unfolded protein binding			ovary(2)	2	all_neural(206;0.181)	all_epithelial(9;0.000606)|all_hematologic(28;0.00287)|Acute lymphoblastic leukemia(9;0.0647)|Ovarian(593;0.196)	OV - Ovarian serous cystadenocarcinoma(82;0.00399)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		GGGACGGGGTCGTTTTTCTCT	0.423													19	95					0	0	0.00152264	0	0
PTPRN2	5799	broad.mit.edu	37	7	157926695	157926695	+	Silent	SNP	G	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:157926695G>T	uc003wno.2	-	9	1351	c.1230C>A	c.(1228-1230)CTC>CTA	p.L410L	PTPRN2_uc003wnp.2_Silent_p.L393L|PTPRN2_uc003wnq.2_Silent_p.L410L|PTPRN2_uc003wnr.2_Silent_p.L372L|PTPRN2_uc011kwa.1_Silent_p.L433L	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	410	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTCCAGGTAAGAGTCGAGACC	0.602													8	65					1.26484e-09	4.47894e-09	0.000157383	1	0
PTPRN2	5799	broad.mit.edu	37	7	157931004	157931004	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:157931004G>A	uc003wno.2	-	7	1235	c.1114C>T	c.(1114-1116)CGT>TGT	p.R372C	PTPRN2_uc003wnp.2_Missense_Mutation_p.R355C|PTPRN2_uc003wnq.2_Missense_Mutation_p.R372C|PTPRN2_uc003wnr.2_Missense_Mutation_p.R334C|PTPRN2_uc011kwa.1_Missense_Mutation_p.R395C	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	372	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTGTCTCCACGGAGGGTGGCC	0.677													8	40					0	0	0.000274275	0	0
WDR60	55112	broad.mit.edu	37	7	158694445	158694445	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:158694445G>A	uc003woe.3	+	9	1233	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_5'UTR	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	359										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		TGAAAAGGAAGAAACTGATTT	0.269													5	18					0	0	0.00116845	0	0
MYOM2	9172	broad.mit.edu	37	8	2044149	2044150	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:2044149_2044150GG>AA	uc003wpx.3	+	18	2326_2327	c.2188_2189GG>AA	c.(2188-2190)GGC>AAC	p.G730N	MYOM2_uc011kwi.1_Missense_Mutation_p.G155N	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	730	Fibronectin type-III 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CATGACCCTCGGCTGGAAGGTC	0.569													33	84					0	0	6.4e-05	0	0
CSMD1	64478	broad.mit.edu	37	8	2813131	2813131	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:2813131C>T	uc011kwk.1	-	64	10367	c.9977G>A	c.(9976-9978)GGA>GAA	p.G3326E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2655E|CSMD1_uc010lrg.2_Missense_Mutation_p.G1217E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3326	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGCGACTTTCCTGTCCATTT	0.488													13	39					0	0	0.00185496	0	0
CSMD1	64478	broad.mit.edu	37	8	2820047	2820047	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:2820047G>A	uc011kwk.1	-	61	9962	c.9572C>T	c.(9571-9573)TCC>TTC	p.S3191F	CSMD1_uc011kwj.1_Missense_Mutation_p.S2520F|CSMD1_uc010lrg.2_Missense_Mutation_p.S1082F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3191	Extracellular (Potential).|Sushi 26.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCTTCTGGAGGATCCCACGAG	0.502													6	45					0	0	0.00198382	0	0
CSMD1	64478	broad.mit.edu	37	8	2910145	2910145	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:2910145G>A	uc011kwk.1	-	50	7892	c.7502C>T	c.(7501-7503)TCC>TTC	p.S2501F	CSMD1_uc011kwj.1_Missense_Mutation_p.S1830F|CSMD1_uc010lrg.2_Missense_Mutation_p.S569F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2501	Extracellular (Potential).|Sushi 15.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTTTCCTGGGGATTCTGGGAT	0.403													12	10					0	0	0.00185496	0	0
SGK223	157285	broad.mit.edu	37	8	8234649	8234649	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:8234649G>A	uc003wsh.3	-	2	1270	c.1270C>T	c.(1270-1272)CCT>TCT	p.P424S		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	424							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GACTTGGAAGGCACCGGAGCT	0.632													34	53					0	0	0.00148497	0	0
RP1L1	94137	broad.mit.edu	37	8	10469043	10469043	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:10469043G>A	uc003wtc.2	-	4	2794	c.2565C>T	c.(2563-2565)ACC>ACT	p.T855T		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	855					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCCTGGGCGGGGTGGGACAGT	0.731													7	6					0	0	0.000157383	0	0
RP1L1	94137	broad.mit.edu	37	8	10470209	10470209	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:10470209G>A	uc003wtc.2	-	4	1628	c.1399C>T	c.(1399-1401)CCA>TCA	p.P467S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	467					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GAGGACTCTGGCTCCGAGCCC	0.716													33	68					0	0	0.00148497	0	0
GATA4	2626	broad.mit.edu	37	8	11615832	11615832	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:11615832G>A	uc003wuc.2	+	7	1731	c.1177G>A	c.(1177-1179)GGG>AGG	p.G393R	GATA4_uc003wub.1_Missense_Mutation_p.G187R|GATA4_uc011kxc.1_Missense_Mutation_p.G394R|uc003wud.1_5'Flank	NM_002052	NP_002043	P43694	GATA4_HUMAN	GATA binding protein 4	393					atrial septum primum morphogenesis|atrial septum secundum morphogenesis|blood coagulation|cardiac right ventricle morphogenesis|cell-cell signaling|embryonic foregut morphogenesis|embryonic heart tube anterior/posterior pattern formation|endocardial cushion development|endoderm development|heart looping|intestinal epithelial cell differentiation|male gonad development|positive regulation of angiogenesis|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|response to drug|transcription from RNA polymerase II promoter|ventricular septum development	nucleoplasm	activating transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(15;0.0839)		STAD - Stomach adenocarcinoma(15;0.00225)	COAD - Colon adenocarcinoma(149;0.199)		GTCTGGCCATGGGCCCTCCAT	0.612													24	138					0	0	0.000878237	0	0
DLC1	10395	broad.mit.edu	37	8	13357009	13357009	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:13357009A>G	uc003wwm.2	-	2	1016	c.572T>C	c.(571-573)CTG>CCG	p.L191P	DLC1_uc003wwn.2_Missense_Mutation_p.L191P|DLC1_uc011kxy.1_Missense_Mutation_p.L191P	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	191					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GCAAAGCTCCAGGCTTTTACT	0.378													40	94					0	0	0.00222228	0	0
TUSC3	7991	broad.mit.edu	37	8	15517052	15517052	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:15517052C>T	uc003wwt.2	+	4	673	c.463C>T	c.(463-465)CCT>TCT	p.P155S	TUSC3_uc003wwr.2_Missense_Mutation_p.P155S|TUSC3_uc003wws.2_Missense_Mutation_p.P155S|TUSC3_uc003wwu.2_Missense_Mutation_p.P155S|TUSC3_uc003wwv.2_Missense_Mutation_p.P155S|TUSC3_uc003www.2_Missense_Mutation_p.P155S|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Missense_Mutation_p.P155S	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	155					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		CATGCATTTTCCTCCAAAAGG	0.368													16	38					0	0	0.000422831	0	0
MSR1	4481	broad.mit.edu	37	8	16001091	16001091	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:16001091C>T	uc003wwz.2	-	8	1207	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	MSR1_uc010lsu.2_Missense_Mutation_p.E355K|MSR1_uc003wxa.2_Missense_Mutation_p.E337K|MSR1_uc003wxb.2_Missense_Mutation_p.E337K|MSR1_uc011kxz.1_Missense_Mutation_p.E111K	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	337	Collagen-like.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CTCCCCTTTTCCCCTTTCTGG	0.348													14	40					0	0	0.000422831	0	0
NAT2	10	broad.mit.edu	37	8	18257782	18257782	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:18257782G>A	uc003wyw.1	+	2	376	c.269G>A	c.(268-270)GGA>GAA	p.G90E		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	90					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		ACAATGTTAGGAGGGTATTTT	0.473									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				14	36					0	0	0.000422831	0	0
PSD3	23362	broad.mit.edu	37	8	18729663	18729663	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:18729663C>T	uc003wza.2	-	3	814	c.711G>A	c.(709-711)AGG>AGA	p.R237R		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	237					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		CAGCCCCTTTCCTCCCATTAT	0.507													8	43					0	0	0.000274275	0	0
PIWIL2	55124	broad.mit.edu	37	8	22146078	22146078	+	Silent	SNP	G	A	A	rs147665310		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:22146078G>A	uc003xbn.2	+	8	1033	c.885G>A	c.(883-885)AGG>AGA	p.R295R	PIWIL2_uc011kzf.1_Silent_p.R295R|PIWIL2_uc010ltv.2_Silent_p.R295R	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	295					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding	p.R295R(1)		skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		AAAGTCAAAGGAAAACAGACA	0.373													13	49					0	0	0.000308642	0	0
ADAM7	8756	broad.mit.edu	37	8	24333949	24333949	+	Missense_Mutation	SNP	C	T	T	rs148539948		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:24333949C>T	uc003xeb.2	+	8	750	c.637C>T	c.(637-639)CGC>TGC	p.R213C	ADAM7_uc003xec.2_5'UTR	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	213	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		tttCCAGTATCGCAGAAATGG	0.289													7	33					0	0	0.00198382	0	0
ADAM7	8756	broad.mit.edu	37	8	24349524	24349524	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:24349524G>A	uc003xeb.2	+	14	1578	c.1465G>A	c.(1465-1467)GGA>AGA	p.G489R	ADAM7_uc003xec.2_Missense_Mutation_p.G261R	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	489	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CAGGGTCAATGGATTTCCTTG	0.483													35	70					0	0	0.00195071	0	0
EBF2	64641	broad.mit.edu	37	8	25715986	25715986	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:25715986C>T	uc003xes.1	-	14	1394	c.1377G>A	c.(1375-1377)CGG>CGA	p.R459R	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	459	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AAGAGTATCCCCGCGGAGAGA	0.522													10	55					0	0	0.000978159	0	0
INTS9	55756	broad.mit.edu	37	8	28638404	28638404	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:28638404G>A	uc003xha.2	-	12	1505	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F	INTS9_uc011lav.1_Silent_p.F378F|INTS9_uc011law.1_Silent_p.F381F|INTS9_uc011lax.1_Silent_p.F295F|INTS9_uc010lvc.2_RNA	NM_018250	NP_060720	Q9NV88	INT9_HUMAN	integrator complex subunit 9 isoform 1	402					snRNA processing	integrator complex	protein binding			central_nervous_system(1)|pancreas(1)	2		Ovarian(32;0.0439)		KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.152)		CCACGTCCCCGAAGCGGAGGG	0.493													6	46					0	0	0.00116845	0	0
HMBOX1	79618	broad.mit.edu	37	8	28866603	28866603	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:28866603C>T	uc003xhd.3	+	5	943	c.601C>T	c.(601-603)CGG>TGG	p.R201W	HMBOX1_uc010lvd.2_Missense_Mutation_p.R201W|HMBOX1_uc003xhc.3_Missense_Mutation_p.R201W|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Missense_Mutation_p.R201W|HMBOX1_uc011lay.1_Missense_Mutation_p.R201W|HMBOX1_uc003xhf.2_Missense_Mutation_p.R189W|HMBOX1_uc003xhg.2_Missense_Mutation_p.R189W	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	201					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		CAGTCAGAGCCGGATCTCTCA	0.423													22	107					0	0	0.00278032	0	0
KIF13B	23303	broad.mit.edu	37	8	28950352	28950352	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:28950352G>A	uc003xhh.3	-	37	4427	c.4368C>T	c.(4366-4368)TCC>TCT	p.S1456S	KIF13B_uc011laz.1_5'UTR	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	1456					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		GCGGCACGAAGGATTTGACAG	0.478													4	21					0	0	0.000602214	0	0
GSR	2936	broad.mit.edu	37	8	30537136	30537136	+	Silent	SNP	A	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:30537136A>T	uc003xih.1	-	13	1561	c.1470T>A	c.(1468-1470)GGT>GGA	p.G490G		NM_000637	NP_000628	P00390	GSHR_HUMAN	glutathione reductase precursor	490					cell redox homeostasis|nucleobase, nucleoside and nucleotide interconversion	cytosol|mitochondrion	electron carrier activity|glutathione-disulfide reductase activity			ovary(2)|pancreas(2)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(542;0.105)|Kidney(114;0.125)	Carmustine(DB00262)|Glutathione(DB00143)|NADH(DB00157)	CAACAGCAAAACCCTGCAGCA	0.428													10	69					0	0	0.00185496	0	0
TEX15	56154	broad.mit.edu	37	8	30700826	30700826	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:30700826G>A	uc003xil.2	-	1	5708	c.5708C>T	c.(5707-5709)TCC>TTC	p.S1903F		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1903										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTTGCTGAAGGATTGTGTTCT	0.348													25	78					0	0	0.000878237	0	0
TEX15	56154	broad.mit.edu	37	8	30703594	30703594	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:30703594G>A	uc003xil.2	-	1	2940	c.2940C>T	c.(2938-2940)ATC>ATT	p.I980I		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	980										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CATCACTTAGGATATTTAGGA	0.343													38	77					0	0	0.000953801	0	0
WRN	7486	broad.mit.edu	37	8	30916728	30916728	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:30916728C>T	uc003xio.3	+	3	944	c.156C>T	c.(154-156)TCC>TCT	p.S52S		NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	52	Interaction with WRNIP1 (By similarity).				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TCACTGGATCCATTGTGTATA	0.363			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				18	154					0	0	0.00188189	0	0
WRN	7486	broad.mit.edu	37	8	30999245	30999245	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:30999245C>T	uc003xio.3	+	26	3975	c.3187C>T	c.(3187-3189)CTT>TTT	p.L1063F	WRN_uc010lvk.2_Missense_Mutation_p.L530F	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1063					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		GAGCCTCATCCTTCAAGCTAA	0.333			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				24	54					0	0	0.001512	0	0
NRG1	3084	broad.mit.edu	37	8	32617801	32617801	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:32617801G>A	uc003xiv.2	+	11	1662	c.1145G>A	c.(1144-1146)AGC>AAC	p.S382N	NRG1_uc011lbf.1_Missense_Mutation_p.S379N|NRG1_uc010lvo.2_Missense_Mutation_p.S379N|NRG1_uc003xiu.2_Missense_Mutation_p.S387N|NRG1_uc003xiw.2_Missense_Mutation_p.S379N|NRG1_uc003xit.2_Missense_Mutation_p.S382N|NRG1_uc010lvr.2_Missense_Mutation_p.S124N|NRG1_uc010lvs.2_Missense_Mutation_p.S124N|NRG1_uc010lvp.2_Missense_Mutation_p.S336N|NRG1_uc010lvq.2_Missense_Mutation_p.S319N|NRG1_uc011lbg.1_Missense_Mutation_p.S228N|NRG1_uc011lbh.1_Missense_Mutation_p.S225N|NRG1_uc003xja.2_Missense_Mutation_p.S193N	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	382	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		AGTAGGCACAGCAGCCCAACT	0.537													8	130					0	0	0.000274275	0	0
UNC5D	137970	broad.mit.edu	37	8	35624420	35624420	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:35624420G>A	uc003xjr.1	+	15	2642	c.2314G>A	c.(2314-2316)GAA>AAA	p.E772K	UNC5D_uc003xjs.1_Missense_Mutation_p.E767K|UNC5D_uc003xju.1_Missense_Mutation_p.E348K	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	772	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TCCCCTGCAGGAAGTCCCGTT	0.517													7	25					0	0	0.000157383	0	0
ADAM18	8749	broad.mit.edu	37	8	39587434	39587434	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:39587434C>T	uc003xni.2	+	20	2195	c.2195C>T	c.(2194-2196)TCA>TTA	p.S732L	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.S708L	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	732	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TCCGTTGTATCAGAAAGCGAT	0.318													34	114					0	0	0.00170553	0	0
IDO2	169355	broad.mit.edu	37	8	39873107	39873107	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:39873107C>T	uc010lwy.1	+	11	1491	c.1249C>T	c.(1249-1251)CAC>TAC	p.H417Y	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Missense_Mutation_p.H158Y|IDO2_uc003xnp.1_Missense_Mutation_p.H158Y	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	404					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						GTCAATCCTTCACCCACGTGG	0.577													16	35					0	0	0.000308642	0	0
ZMAT4	79698	broad.mit.edu	37	8	40532416	40532416	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:40532416C>T	uc003xnr.2	-	5	530	c.384G>A	c.(382-384)ATG>ATA	p.M128I	ZMAT4_uc003xns.2_Intron	NM_024645	NP_078921	Q9H898	ZMAT4_HUMAN	zinc finger, matrin type 4 isoform a	128						nucleus	DNA binding|zinc ion binding			pancreas(1)|central_nervous_system(1)|skin(1)	3	Ovarian(28;0.00724)|Colorectal(14;0.0468)	all_cancers(7;0.00936)|all_epithelial(6;3.53e-06)|all_lung(54;0.0318)|Lung NSC(58;0.0919)|Esophageal squamous(32;0.15)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;0.00722)			GAGCAGTGTCCATCCGTGGGG	0.532													26	73					0	0	0.00127121	0	0
ANK1	286	broad.mit.edu	37	8	41551532	41551532	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:41551532C>T	uc003xok.2	-	29	3500	c.3416G>A	c.(3415-3417)CGG>CAG	p.R1139Q	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.R455Q|ANK1_uc003xoi.2_Missense_Mutation_p.R1139Q|ANK1_uc003xoj.2_Missense_Mutation_p.R1139Q|ANK1_uc003xol.2_Missense_Mutation_p.R1139Q|ANK1_uc003xom.2_Missense_Mutation_p.R1180Q	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1139					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GTGGAACTTCCGGCGCCGGGG	0.647													13	29					0	0	0.000566183	0	0
VDAC3	7419	broad.mit.edu	37	8	42259489	42259489	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:42259489C>T	uc011lct.1	+	7	650	c.507C>T	c.(505-507)TTC>TTT	p.F169F	VDAC3_uc010lxk.2_3'UTR|VDAC3_uc003xpc.2_Silent_p.F170F	NM_005662	NP_005653	Q9Y277	VDAC3_HUMAN	voltage-dependent anion channel 3 isoform b	169	Beta stranded; (By similarity).				adenine transport	mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			upper_aerodigestive_tract(1)	1	all_cancers(6;3.86e-23)|all_lung(13;6.47e-12)|Lung NSC(13;1.08e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;3.48e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00266)|Lung(22;0.00849)|LUSC - Lung squamous cell carcinoma(45;0.024)		Dihydroxyaluminium(DB01375)	AGAATAATTTCGCCCTGGGTT	0.463													11	40					0	0	0.00244969	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587261	42587261	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:42587261G>A	uc003xpi.1	+	5	939	c.811G>A	c.(811-813)GTC>ATC	p.V271I		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	271	Helical; (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			ATCCACATCGGTCTTGGTTTC	0.423													37	128					0	0	0.00111076	0	0
HOOK3	84376	broad.mit.edu	37	8	42829284	42829284	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:42829284C>T	uc003xpr.2	+	13	1510	c.1268C>T	c.(1267-1269)ACC>ATC	p.T423I	HOOK3_uc010lxq.1_Missense_Mutation_p.T423I	NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	423	Potential.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			CTGAAGGAAACCATTGAAGAG	0.398			T	RET	papillary thyroid								64	187					0	0	0.000781405	0	0
POTEA	340441	broad.mit.edu	37	8	43159870	43159870	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:43159870G>A	uc003xpz.1	+	6	905	c.862G>A	c.(862-864)GAA>AAA	p.E288K	POTEA_uc003xqa.1_Missense_Mutation_p.E242K	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	288										ovary(1)	1						TGACTACAAAGAAAACCAGAT	0.229													13	39					0	0	0.000308642	0	0
POTEA	340441	broad.mit.edu	37	8	43211928	43211928	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:43211928G>A	uc003xpz.1	+	12	1430	c.1387G>A	c.(1387-1389)GAT>AAT	p.D463N	POTEA_uc003xqa.1_Missense_Mutation_p.D417N	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	463										ovary(1)	1						AAAAATCCAGGATGCAGTTAT	0.358													8	42					0	0	0.00136819	0	0
KIAA0146	23514	broad.mit.edu	37	8	48309147	48309148	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:48309147_48309148CC>AA	uc003xqd.2	+	6	746_747	c.737_738CC>AA	c.(736-738)CCC>CAA	p.P246Q	KIAA0146_uc011lcz.1_Intron|KIAA0146_uc011lda.1_Intron|KIAA0146_uc011ldb.1_Missense_Mutation_p.P246Q|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Missense_Mutation_p.P176Q|KIAA0146_uc011ldd.1_Missense_Mutation_p.P186Q|KIAA0146_uc003xqe.2_Intron|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Intron	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	246											0		Lung NSC(58;0.175)				GCTAAGTTTCCCAGGACTCCAG	0.351													10	292					0	0	6.4e-05	0	0
PRKDC	5591	broad.mit.edu	37	8	48701521	48701521	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:48701521G>A	uc003xqi.2	-	77	10905	c.10848C>T	c.(10846-10848)GCC>GCT	p.A3616A	PRKDC_uc003xqj.2_Silent_p.A3616A|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3616					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GGTCACCCAAGGCTGCATACA	0.438								NHEJ					16	59					0	0	0.000958276	0	0
PXDNL	137902	broad.mit.edu	37	8	52321427	52321427	+	Silent	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:52321427G>C	uc003xqu.3	-	17	2858	c.2757C>G	c.(2755-2757)CTC>CTG	p.L919L	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	919					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CTGTCTTCAGGAGACCCCGAG	0.607													4	22					0	0	0.00024832	0	0
PXDNL	137902	broad.mit.edu	37	8	52366189	52366189	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:52366189G>A	uc003xqu.3	-	10	1240	c.1139C>T	c.(1138-1140)TCC>TTC	p.S380F		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	380	Ig-like C2-type 2.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AAGTCCACTGGACGTTGCCAC	0.502													10	48					0	0	0.000442599	0	0
PXDNL	137902	broad.mit.edu	37	8	52384783	52384783	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:52384783C>T	uc003xqu.3	-	8	877	c.776G>A	c.(775-777)GGA>GAA	p.G259E		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	259	Ig-like C2-type 1.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TTTGGGGTTTCCTTCCGCCCG	0.443													15	85					0	0	0.000566183	0	0
RP1	6101	broad.mit.edu	37	8	55533787	55533787	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:55533787G>A	uc003xsd.1	+	2	409	c.261G>A	c.(259-261)CGG>CGA	p.R87R	RP1_uc011ldy.1_Silent_p.R87R	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	87	Doublecortin 1.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GCACCCCTCGGGGCAGGCACA	0.592													13	40					0	0	0.00136819	0	0
PENK	5179	broad.mit.edu	37	8	57354400	57354400	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:57354400C>T	uc003xsz.2	-	2	316	c.235G>A	c.(235-237)GAT>AAT	p.D79N	PENK_uc003xta.3_Missense_Mutation_p.D79N	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	79					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CTGGTGCCATCTTGAGGAAGC	0.483													31	104					0	0	0.000692331	0	0
PDE7A	5150	broad.mit.edu	37	8	66636582	66636582	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:66636582G>A	uc003xvq.2	-	11	1082	c.1070C>T	c.(1069-1071)GCT>GTT	p.A357V	PDE7A_uc003xvr.2_Missense_Mutation_p.A357V|PDE7A_uc003xvp.2_Missense_Mutation_p.A331V	NM_002604	NP_002595	Q13946	PDE7A_HUMAN	phosphodiesterase 7A isoform b	357	Catalytic (By similarity).					cell fraction|cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding				0			Epithelial(68;0.0509)|BRCA - Breast invasive adenocarcinoma(89;0.111)|all cancers(69;0.168)|OV - Ovarian serous cystadenocarcinoma(28;0.238)		Dyphylline(DB00651)|Ketotifen(DB00920)	ACATTTCAAAGCCATCTAGCA	0.353													10	27					0	0	0.00136819	0	0
C8orf34	116328	broad.mit.edu	37	8	69621251	69621251	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:69621251G>A	uc010lyz.2	+	9	1055	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K	C8orf34_uc003xyb.2_Missense_Mutation_p.E311K	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	336					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CAACCTGGAAGAAAGGACAGA	0.348													6	13					0	0	0.00198382	0	0
SULF1	23213	broad.mit.edu	37	8	70498635	70498635	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:70498635C>T	uc010lza.1	+	7	1173	c.456C>T	c.(454-456)ATC>ATT	p.I152I	SULF1_uc003xyd.2_Silent_p.I152I|SULF1_uc003xye.2_Silent_p.I152I|SULF1_uc003xyf.2_Silent_p.I152I|SULF1_uc003xyg.2_Silent_p.I152I	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	152					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GCAGCTACATCCCCCCTGGGT	0.348													17	53					0	0	0.00152264	0	0
PKIA	5569	broad.mit.edu	37	8	79510748	79510749	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:79510748_79510749AG>CA	uc003yba.2	+	3	653_654	c.129_130AG>CA	c.(127-132)GCAGGT>GCCAGT	p.G44S	PKIA_uc003ybb.2_Missense_Mutation_p.G44S|PKIA_uc010lzo.2_Missense_Mutation_p.G44S	NM_006823	NP_006814	P61925	IPKA_HUMAN	cAMP-dependent protein kinase inhibitor alpha	44							cAMP-dependent protein kinase inhibitor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGAAATTAGCAGGTCTTGATAT	0.391													16	61					0	0	6.4e-05	0	0
MMP16	4325	broad.mit.edu	37	8	89058940	89058940	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:89058940C>T	uc003yeb.3	-	9	1728	c.1446G>A	c.(1444-1446)GGG>GGA	p.G482G		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	482	Extracellular (Potential).|Hemopexin-like 3.				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						ATTCAGGGATCCCTTTCCAGA	0.378													9	60					0	0	0.000978159	0	0
SLC26A7	115111	broad.mit.edu	37	8	92365218	92365218	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:92365218C>T	uc003yex.2	+	12	1586	c.1308C>T	c.(1306-1308)ATC>ATT	p.I436I	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.I436I|SLC26A7_uc003yfa.2_Silent_p.I436I	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	436	Extracellular (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TGGATAAAATCGATTGGGTAA	0.308													9	69					0	0	0.000274275	0	0
SLC26A7	115111	broad.mit.edu	37	8	92378808	92378808	+	Missense_Mutation	SNP	G	A	A	rs149167044		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:92378808G>A	uc003yex.2	+	15	1767	c.1489G>A	c.(1489-1491)GAA>AAA	p.E497K	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.E497K|SLC26A7_uc003yfa.2_Missense_Mutation_p.E497K	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	497	STAS.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			CCTCCAAAAGGAAACCCTGCA	0.313													8	41					0	0	0.000157383	0	0
SLC26A7	115111	broad.mit.edu	37	8	92378861	92378861	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:92378861G>A	uc003yex.2	+	15	1820	c.1542G>A	c.(1540-1542)CTG>CTA	p.L514L	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.L514L|SLC26A7_uc003yfa.2_Silent_p.L514L	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	514	STAS.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			TTGTTTTCCTGAATGCAAAAA	0.338													22	68					0	0	0.00229938	0	0
RUNX1T1	862	broad.mit.edu	37	8	92998377	92998377	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:92998377G>A	uc003yfd.2	-	8	1338	c.1254C>T	c.(1252-1254)CCC>CCT	p.P418P	RUNX1T1_uc003yfc.1_Silent_p.P391P|RUNX1T1_uc003yfe.1_Silent_p.P381P|RUNX1T1_uc010mao.2_Silent_p.P391P|RUNX1T1_uc011lgi.1_Silent_p.P429P|RUNX1T1_uc010man.1_5'UTR|RUNX1T1_uc003yfb.1_Silent_p.P381P	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	418					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			CTGGGTTGACGGGACTCTGCT	0.453													13	83					0	0	0.000422831	0	0
TMEM67	91147	broad.mit.edu	37	8	94792886	94792886	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:94792886C>T	uc011lgk.1	+	8	851	c.780C>T	c.(778-780)TAC>TAT	p.Y260Y	TMEM67_uc010mat.1_Silent_p.Y175Y|TMEM67_uc010maw.2_Intron|TMEM67_uc003yga.3_Silent_p.Y179Y	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	260					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			TGAATTCTTACGACTTTGCCA	0.348													30	175					0	0	0.00178596	0	0
TMEM67	91147	broad.mit.edu	37	8	94809567	94809567	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:94809567G>A	uc011lgk.1	+	20	2040	c.1969G>A	c.(1969-1971)GGT>AGT	p.G657S	TMEM67_uc010maw.2_Missense_Mutation_p.G363S|TMEM67_uc003yga.3_Missense_Mutation_p.G576S|TMEM67_uc011lgl.1_Missense_Mutation_p.G56S	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	657					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			AGGTGAGGGTGGTGTACGAAG	0.348													12	71					0	0	0.000308642	0	0
GEM	2669	broad.mit.edu	37	8	95262708	95262708	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:95262708G>A	uc003ygj.2	-	5	970	c.721C>T	c.(721-723)CTT>TTT	p.L241F	GEM_uc003ygi.2_Missense_Mutation_p.L241F	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	241					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			TCCCGCCGAAGGCGCACCTGT	0.577													4	38					0	0	0.000602214	0	0
KIAA1429	25962	broad.mit.edu	37	8	95503874	95503874	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:95503874G>A	uc003ygo.1	-	22	5085	c.5072C>T	c.(5071-5073)TCA>TTA	p.S1691L	KIAA1429_uc010maz.1_Intron	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1691					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TCTATTGCCTGAAAACCCACC	0.433													24	74					0	0	0.00278032	0	0
C8orf47	203111	broad.mit.edu	37	8	99102183	99102183	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:99102183G>A	uc003yih.1	+	2	1086	c.938G>A	c.(937-939)CGA>CAA	p.R313Q		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	313	Glu-rich.										0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			CATCCAGCACGAAATGTAGAG	0.438													19	45					0	0	0.00188189	0	0
POP1	10940	broad.mit.edu	37	8	99146758	99146758	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:99146758T>C	uc003yij.3	+	7	982	c.882T>C	c.(880-882)CTT>CTC	p.L294L	POP1_uc011lgv.1_Silent_p.L294L|POP1_uc003yik.2_Silent_p.L294L	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	294					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			GCCTTGTGCTTTATCGGGTGA	0.502													16	58					0	0	0.00121646	0	0
RIMS2	9699	broad.mit.edu	37	8	105263289	105263289	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:105263289C>T	uc003yls.2	+	27	4024	c.3783C>T	c.(3781-3783)GTC>GTT	p.V1261V	RIMS2_uc003ylp.2_Silent_p.V1243V|RIMS2_uc003ylw.2_Silent_p.V1250V|RIMS2_uc003ylq.2_Silent_p.V1057V|RIMS2_uc003ylr.2_Silent_p.V1082V	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1305	C2 2.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			ATAACGGAGTCTGCATAGCCA	0.408										HNSCC(12;0.0054)			6	32					0	0	0.00116845	0	0
TM7SF4	81501	broad.mit.edu	37	8	105360854	105360854	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:105360854G>A	uc003ylx.1	+	2	123	c.74G>A	c.(73-75)GGA>GAA	p.G25E		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	25					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AGAAGCCCCGGATGGATGGAC	0.498													9	43					0	0	0.000274275	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813572	106813572	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:106813572C>T	uc003ymd.2	+	8	1285	c.1262C>T	c.(1261-1263)CCC>CTC	p.P421L	ZFPM2_uc011lhs.1_Missense_Mutation_p.P152L|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	421					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AGCGAACTTCCCCAGAGCCAA	0.498													4	20					0	0	0.00024832	0	0
ANGPT1	284	broad.mit.edu	37	8	108315572	108315572	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:108315572C>T	uc003ymn.2	-	5	1300	c.832G>A	c.(832-834)GAG>AAG	p.E278K	ANGPT1_uc011lhv.1_Missense_Mutation_p.E78K|ANGPT1_uc003ymo.2_Missense_Mutation_p.E277K|ANGPT1_uc003ymp.3_Missense_Mutation_p.E77K	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	278	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TTCTCTTCCTCTCTTTTTCCT	0.313													9	36					0	0	0.000442599	0	0
RSPO2	340419	broad.mit.edu	37	8	108913395	108913395	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:108913395C>T	uc003yms.2	-	6	1298	c.640G>A	c.(640-642)GAG>AAG	p.E214K	RSPO2_uc003ymq.2_Missense_Mutation_p.E147K|RSPO2_uc003ymr.2_Missense_Mutation_p.E150K	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	214					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			ttcctcttctccttcgccttT	0.343													9	17					0	0	0.000442599	0	0
RSPO2	340419	broad.mit.edu	37	8	109001376	109001376	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:109001376C>T	uc003yms.2	-	3	849	c.191G>A	c.(190-192)CGA>CAA	p.R64Q	RSPO2_uc003ymq.2_5'UTR|RSPO2_uc003ymr.2_Intron	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	64					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CCCTTCTCTTCGAAGGAAGAA	0.478													8	43					0	0	0.000442599	0	0
TRHR	7201	broad.mit.edu	37	8	110100421	110100421	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:110100421C>T	uc003ymz.3	+	1	696	c.680C>T	c.(679-681)CCT>CTT	p.P227L		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	227	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			CCTTCAGATCCTAAAGAAAAC	0.368													6	42					0	0	0.00116845	0	0
NUDCD1	84955	broad.mit.edu	37	8	110305711	110305711	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:110305711G>A	uc003ynb.3	-	4	613	c.502C>T	c.(502-504)CAC>TAC	p.H168Y	NUDCD1_uc003yna.2_Missense_Mutation_p.H139Y|NUDCD1_uc010mcl.2_Missense_Mutation_p.H81Y|NUDCD1_uc010mcm.1_Missense_Mutation_p.H81Y	NM_032869	NP_116258	Q96RS6	NUDC1_HUMAN	NudC domain containing 1 isoform 1	168										ovary(1)|breast(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;1.56e-12)			GAGATACTGTGAATTATAATA	0.323													7	65					0	0	0.000157383	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110509253	110509253	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:110509253G>A	uc003yne.2	+	64	10537	c.10433G>A	c.(10432-10434)GGA>GAA	p.G3478E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3478	PbH1 8.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTTATACAAGGATTTACCATT	0.338										HNSCC(38;0.096)			17	79					0	0	0.00074312	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110530641	110530641	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:110530641A>G	uc003yne.2	+	73	12039	c.11935A>G	c.(11935-11937)AGA>GGA	p.R3979G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3979	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAGCAAAATAAGAGGGAAGAG	0.393										HNSCC(38;0.096)			5	25					0	0	0.000602214	0	0
KCNV1	27012	broad.mit.edu	37	8	110980428	110980428	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:110980428G>A	uc003ynr.3	-	3	1734	c.1392C>T	c.(1390-1392)ATC>ATT	p.I464I	KCNV1_uc010mcw.2_Silent_p.I464I	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	464	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			AGTTAACACTGATATATGAGT	0.463													11	38					0	0	0.000978159	0	0
CSMD3	114788	broad.mit.edu	37	8	113317070	113317070	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:113317070C>T	uc003ynu.2	-	52	8305	c.8146G>A	c.(8146-8148)GAA>AAA	p.E2716K	CSMD3_uc003yns.2_Missense_Mutation_p.E1918K|CSMD3_uc003ynt.2_Missense_Mutation_p.E2676K|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2716	Extracellular (Potential).|Sushi 16.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTTTTGTATTCATAATGGGAG	0.403										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	41					0	0	0.000157383	0	0
COL14A1	7373	broad.mit.edu	37	8	121174798	121174798	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:121174798C>T	uc003yox.2	+	4	604	c.339C>T	c.(337-339)GGC>GGT	p.G113G		NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	113	Fibronectin type-III 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CAGCTCAAGGCCAATTCAGAA	0.383													7	37					0	0	0.00198382	0	0
MTBP	27085	broad.mit.edu	37	8	121471542	121471542	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:121471542C>T	uc003ypc.1	+	8	880	c.835C>T	c.(835-837)CTT>TTT	p.L279F	MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	279					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TACTGACTTCCTTGCCAAAAA	0.294													16	72					0	0	0.000566183	0	0
FER1L6	654463	broad.mit.edu	37	8	125076727	125076727	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:125076727C>T	uc003yqw.2	+	26	3674	c.3468C>T	c.(3466-3468)ATC>ATT	p.I1156I	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1156	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGCCGGCCATCCTGGTTGACG	0.577													8	42					0	0	0.000157383	0	0
ZNF572	137209	broad.mit.edu	37	8	125988866	125988866	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:125988866C>T	uc003yrr.2	+	3	511	c.356C>T	c.(355-357)GCC>GTC	p.A119V		NM_152412	NP_689625	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			CATACCAATGCCTGTGTCCAG	0.423										HNSCC(60;0.17)			18	66					0	0	0.00152264	0	0
ADCY8	114	broad.mit.edu	37	8	131922042	131922042	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:131922042C>T	uc003ytd.3	-	6	1808	c.1552G>A	c.(1552-1554)GGT>AGT	p.G518S	ADCY8_uc010mds.2_Missense_Mutation_p.G518S	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	518	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CCCAAAACACCGCACAGCACC	0.473										HNSCC(32;0.087)			13	76					0	0	0.00185496	0	0
ADCY8	114	broad.mit.edu	37	8	131964149	131964149	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:131964149G>A	uc003ytd.3	-	3	1462	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F	ADCY8_uc010mds.2_Silent_p.F402F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	402	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGATCCGATGGAACTGGTGCT	0.527										HNSCC(32;0.087)			7	23					0	0	0.000157383	0	0
KCNQ3	3786	broad.mit.edu	37	8	133153538	133153538	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:133153538G>A	uc003ytj.2	-	10	1528	c.1303C>T	c.(1303-1305)CCT>TCT	p.P435S	KCNQ3_uc010mdt.2_Missense_Mutation_p.P435S	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	435					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CTACCACGAGGATTAGAAAGG	0.413													9	43					0	0	0.00136819	0	0
TG	7038	broad.mit.edu	37	8	133881993	133881993	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:133881993G>A	uc003ytw.2	+	3	237	c.196G>A	c.(196-198)GAC>AAC	p.D66N		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	66	Thyroglobulin type-1 1.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GTGCCAGAACGACGGCCGCTC	0.637													7	50					0	0	0.000274275	0	0
TG	7038	broad.mit.edu	37	8	134042252	134042252	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:134042252G>A	uc003ytw.2	+	41	7264	c.7223G>A	c.(7222-7224)CGG>CAG	p.R2408Q	TG_uc010mdw.2_Missense_Mutation_p.R1167Q|TG_uc011ljb.1_Missense_Mutation_p.R777Q|TG_uc011ljc.1_Missense_Mutation_p.R541Q	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2408					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CAACTTTTCCGGAGAGCTGTG	0.607													18	77					0	0	0.00229938	0	0
TG	7038	broad.mit.edu	37	8	134146969	134146970	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:134146969_134146970GG>AA	uc003ytw.2	+	48	8279_8280	c.8238_8239GG>AA	c.(8236-8241)ACGGCT>ACAACT	p.A2747T	TG_uc010mdw.2_Missense_Mutation_p.A1506T|TG_uc011ljb.1_Missense_Mutation_p.A1116T|TG_uc011ljc.1_Missense_Mutation_p.A880T	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2747					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGGAGTTGACGGCTGGATCTGG	0.554													5	28					0	0	6.4e-05	0	0
COL22A1	169044	broad.mit.edu	37	8	139790639	139790639	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:139790639C>T	uc003yvd.2	-	15	2162	c.1715G>A	c.(1714-1716)GGA>GAA	p.G572E		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	572	Pro-rich.|Gly-rich.|Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCCAGGTGGTCCTTGGGGCCC	0.552										HNSCC(7;0.00092)			4	35					0	0	0.00024832	0	0
DENND3	22898	broad.mit.edu	37	8	142202474	142202474	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:142202474C>T	uc003yvy.2	+	21	3462	c.3184C>T	c.(3184-3186)CAT>TAT	p.H1062Y	DENND3_uc010mep.2_Missense_Mutation_p.H1023Y|DENND3_uc003ywa.1_Missense_Mutation_p.H112Y|DENND3_uc003ywb.2_Missense_Mutation_p.H112Y	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	1062										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TGGATCCCTCCATCAAGAATT	0.522													19	66					0	0	0.00121646	0	0
FLJ43860	389690	broad.mit.edu	37	8	142476519	142476519	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:142476519G>A	uc003ywi.2	-	19	2548	c.2467C>T	c.(2467-2469)CCC>TCC	p.P823S	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	823							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CTGTCCAAGGGGATGGAGATG	0.657													6	18					0	0	0.00116845	0	0
BAI1	575	broad.mit.edu	37	8	143623480	143623480	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:143623480C>T	uc003ywm.2	+	27	4068	c.3885C>T	c.(3883-3885)CCC>CCT	p.P1295P		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1295	Cytoplasmic (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCCGCTATCCCGGCGGGCCCC	0.642													8	29					0	0	0.000157383	0	0
LYPD2	137797	broad.mit.edu	37	8	143832508	143832508	+	Missense_Mutation	SNP	C	T	T	rs145933616	by1000genomes	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:143832508C>T	uc003ywz.2	-	2	222	c.139G>A	c.(139-141)GAA>AAA	p.E47K		NM_205545	NP_991108	Q6UXB3	LYPD2_HUMAN	LY6/PLAUR domain containing 2 precursor	47	UPAR/Ly6.					anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CACATGGTTTCGTTGGTGGTG	0.652													29	108					0	0	0.000953801	0	0
LYNX1	66004	broad.mit.edu	37	8	143846063	143846063	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:143846063G>A	uc003yxb.2	-	5	983	c.356C>T	c.(355-357)TCC>TTC	p.S119F	LYNX1_uc003yxa.2_Missense_Mutation_p.S85F	NM_023946	NP_076435	Q9BZG9	LYNX1_HUMAN	Ly-6 neurotoxin-like protein 1 isoform a	Error:Variant_position_missing_in_Q9BZG9_after_alignment						anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GCAAGCGATGGATACGTAGGG	0.662													11	86					0	0	0.00244969	0	0
GML	2765	broad.mit.edu	37	8	143928033	143928033	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:143928033G>A	uc003yxg.2	+	4	494	c.404G>A	c.(403-405)GGA>GAA	p.G135E		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	135					apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane				central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CTTCCAGAAGGAACTGTGAGG	0.463													12	38					0	0	0.00244969	0	0
CYP11B1	1584	broad.mit.edu	37	8	143957285	143957285	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:143957285G>A	uc003yxi.2	-	6	971	c.964C>T	c.(964-966)CCC>TCC	p.P322S	CYP11B1_uc010mex.2_5'UTR|CYP11B1_uc003yxh.2_Missense_Mutation_p.P38S|CYP11B1_uc003yxj.2_Missense_Mutation_p.P322S|CYP11B1_uc010mey.2_Missense_Mutation_p.P393S	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	322					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	ATCAGCAAGGGAAACACCGTC	0.647									Familial_Hyperaldosteronism_type_I				26	107					0	0	0.001512	0	0
ZNF696	79943	broad.mit.edu	37	8	144378433	144378433	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:144378433C>T	uc003yxy.3	+	3	997	c.588C>T	c.(586-588)CTC>CTT	p.L196L		NM_030895	NP_112157	Q9H7X3	ZN696_HUMAN	zinc finger protein 696	196	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			GCTTCAACCTCCTCCGGCACC	0.726													4	10					0	0	0.00024832	0	0
RHPN1	114822	broad.mit.edu	37	8	144463781	144463781	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:144463781C>T	uc003yyb.2	+	13	1661	c.1528C>T	c.(1528-1530)CTG>TTG	p.L510L		NM_052924	NP_443156	Q8TCX5	RHPN1_HUMAN	rhophilin 1	535					signal transduction	intracellular				large_intestine(1)	1	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.156)			CCGGTGGCGGCTGGTGGGGCC	0.682													15	44					0	0	0.000566183	0	0
FAM83H	286077	broad.mit.edu	37	8	144812355	144812355	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:144812355C>T	uc003yzk.2	-	2	467	c.398G>A	c.(397-399)AGC>AAC	p.S133N	FAM83H_uc010mfk.1_5'Flank	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	133					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GATACTGGGGCTGTCGGGGGG	0.662													8	13					0	0	0.000274275	0	0
EPPK1	83481	broad.mit.edu	37	8	144940517	144940517	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:144940517G>A	uc003zaa.1	-	2	14928	c.14915C>T	c.(14914-14916)TCG>TTG	p.S4972L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4972	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCGCTCGGCCGACAGCAGCTT	0.697													14	206					0	0	0.000422831	0	0
HSF1	3297	broad.mit.edu	37	8	145535066	145535066	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:145535066G>C	uc003zbt.3	+	6	794	c.624G>C	c.(622-624)AAG>AAC	p.K208N	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	208						cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			TGAAGAGAAAGATGTGAGGTT	0.622													18	78					0	0	0.00278032	0	0
ZNF16	7564	broad.mit.edu	37	8	146157523	146157523	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr8:146157523G>A	uc003zet.2	-	4	837	c.650C>T	c.(649-651)ACC>ATC	p.T217I	ZNF16_uc003zeu.2_Missense_Mutation_p.T217I	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	217	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		TCCTTGGAAGGTTTTCCCACA	0.488													12	85					0	0	0.00136819	0	0
DMRT2	10655	broad.mit.edu	37	9	1053734	1053734	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:1053734C>T	uc003zha.2	+	3	738	c.538C>T	c.(538-540)CTT>TTT	p.L180F	DMRT2_uc003zgx.3_5'UTR|DMRT2_uc010mgz.2_5'UTR|DMRT2_uc003zgy.3_Missense_Mutation_p.L24F|DMRT2_uc003zhb.3_Missense_Mutation_p.L180F|DMRT2_uc011llt.1_Missense_Mutation_p.L180F|DMRT2_uc011llu.1_Missense_Mutation_p.L180F|DMRT2_uc011llv.1_Missense_Mutation_p.L180F	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	180					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		CAAGAAGGGGCTTTCCGGGAA	0.473													34	105					0	0	0.00148497	0	0
DMRT2	10655	broad.mit.edu	37	9	1057218	1057218	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:1057218C>T	uc003zha.2	+	4	1831	c.1631C>T	c.(1630-1632)TCT>TTT	p.S544F	DMRT2_uc003zgx.3_Missense_Mutation_p.S311F|DMRT2_uc010mgz.2_Missense_Mutation_p.S311F|DMRT2_uc003zgy.3_Missense_Mutation_p.S388F|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Missense_Mutation_p.S544F	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	544					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		CTGTCATTTTCTGTTGAGTCT	0.403													40	129					0	0	0.00285205	0	0
GLIS3	169792	broad.mit.edu	37	9	3856122	3856122	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:3856122G>A	uc003zhw.1	-	8	2089	c.1895C>T	c.(1894-1896)TCA>TTA	p.S632L	GLIS3_uc003zhx.1_Missense_Mutation_p.S787L|GLIS3_uc010mhf.1_Missense_Mutation_p.S181L|GLIS3_uc003zhv.1_RNA|GLIS3_uc003zhy.1_Missense_Mutation_p.S565L	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	632					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		TTGCAGTATTGAAGAAGGAGC	0.463													22	50					0	0	0.00188189	0	0
PPAPDC2	403313	broad.mit.edu	37	9	4662875	4662875	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:4662875T>C	uc003zin.2	+	1	578	c.500T>C	c.(499-501)ATG>ACG	p.M167T	C9orf68_uc003zik.2_Intron|C9orf68_uc003zil.2_Intron|C9orf68_uc010mhj.2_Intron|C9orf68_uc011lly.1_Intron|C9orf68_uc011llz.1_Intron|C9orf68_uc003zim.2_Intron	NM_203453	NP_982278	Q8IY26	PPAC2_HUMAN	phosphatidic acid phosphatase type 2 domain	167	Helical; (Potential).					integral to membrane	hydrolase activity				0	all_hematologic(13;0.137)	Breast(48;0.238)		GBM - Glioblastoma multiforme(50;0.026)		GAGGTGCTGATGAACCTGCTC	0.647													15	45					0	0	0.000308642	0	0
FREM1	158326	broad.mit.edu	37	9	14842369	14842369	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:14842369G>A	uc003zlm.2	-	9	2273	c.1683C>T	c.(1681-1683)ATC>ATT	p.I561I	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	561	CSPG 3.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GAGGCTTTGTGATATTGAAGA	0.493													45	64					0	0	0.000781405	0	0
IFNA16	3449	broad.mit.edu	37	9	21216880	21216880	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:21216880G>A	uc003zor.1	-	1	431	c.425C>T	c.(424-426)GCT>GTT	p.A142V	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	142					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		TTTCCTCACAGCCAGGATGGA	0.463													48	84					0	0	0.000781405	0	0
ELAVL2	1993	broad.mit.edu	37	9	23704966	23704966	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:23704966G>A	uc003zpu.2	-	4	712	c.437C>T	c.(436-438)TCA>TTA	p.S146L	ELAVL2_uc003zps.2_Missense_Mutation_p.S146L|ELAVL2_uc003zpt.2_Missense_Mutation_p.S146L|ELAVL2_uc003zpv.2_Missense_Mutation_p.S146L|ELAVL2_uc003zpw.2_Missense_Mutation_p.S146L	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	146	RRM 2.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TCCATATTGTGAAAAAAGCTG	0.448													13	74					0	0	0.000422831	0	0
TEK	7010	broad.mit.edu	37	9	27202876	27202876	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:27202876G>A	uc003zqi.3	+	13	2410	c.1968G>A	c.(1966-1968)GTG>GTA	p.V656V	TEK_uc011lno.1_Silent_p.V613V|TEK_uc011lnp.1_Silent_p.V509V|TEK_uc003zqj.1_Silent_p.V590V	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	656	Extracellular (Potential).|Fibronectin type-III 3.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CCTCAGCTGTGATTTCTTGGA	0.348													42	70					0	0	0.000781405	0	0
MOBKL2B	79817	broad.mit.edu	37	9	27455544	27455544	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:27455544G>A	uc003zqn.2	-	2	501	c.5C>T	c.(4-6)TCC>TTC	p.S2F		NM_024761	NP_079037	Q86TA1	MOL2B_HUMAN	MOB1, Mps One Binder kinase activator-like 2B	2							metal ion binding|protein binding			ovary(1)|pleura(1)	2		all_neural(11;9.12e-11)		Lung(218;6.54e-05)|LUSC - Lung squamous cell carcinoma(38;0.000397)		CAGGGCTATGGACATGGTCTT	0.498													22	89					0	0	0.000586117	0	0
NFX1	4799	broad.mit.edu	37	9	33294735	33294735	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:33294735C>A	uc003zsq.2	+	2	404	c.343C>A	c.(343-345)CAT>AAT	p.H115N	SUGT1P1_uc010mjq.1_Intron|NFX1_uc011lnw.1_Missense_Mutation_p.H115N|NFX1_uc003zso.2_Missense_Mutation_p.H115N|NFX1_uc003zsp.1_Missense_Mutation_p.H115N|NFX1_uc010mjr.1_Missense_Mutation_p.H115N|NFX1_uc003zsr.2_Missense_Mutation_p.H115N	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	115					inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		TGAGAAGCACCATATCAGAGT	0.488													8	130					0.000157383	0.000554214	0.000157383	1	0
DNAI1	27019	broad.mit.edu	37	9	34501173	34501173	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:34501173G>A	uc003zum.2	+	12	1250	c.1057G>A	c.(1057-1059)GGC>AGC	p.G353S		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	353					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		AGTGGGATATGGCTCTTGTAA	0.269									Kartagener_syndrome				34	48					0	0	0.00111076	0	0
HINT2	84681	broad.mit.edu	37	9	35813492	35813492	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:35813492G>A	uc003zyh.2	-	3	343	c.277C>T	c.(277-279)CCT>TCT	p.P93S	SPAG8_uc003zye.2_5'Flank|SPAG8_uc003zyf.2_5'Flank|SPAG8_uc003zyg.2_5'Flank|HINT2_uc003zyi.2_Missense_Mutation_p.P89S	NM_032593	NP_115982	Q9BX68	HINT2_HUMAN	PKCI-1-related HIT protein precursor	93	HIT.				apoptosis|steroid biosynthetic process	mitochondrion	hydrolase activity				0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			GGCTTCTTAGGAATGACCAGG	0.587											OREG0019179	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	26					0	0	0.00188189	0	0
TRPM3	80036	broad.mit.edu	37	9	73477827	73477828	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:73477827_73477828GG>AA	uc004aid.2	-	3	702_703	c.458_459CC>TT	c.(457-459)GCC>GTT	p.A153V	TRPM3_uc004ahw.2_5'UTR|TRPM3_uc004ahx.2_5'UTR|TRPM3_uc004ahy.2_5'UTR|TRPM3_uc004ahz.2_5'UTR|TRPM3_uc004aia.2_5'UTR|TRPM3_uc004aib.2_5'UTR|TRPM3_uc004aic.2_Missense_Mutation_p.A153V|TRPM3_uc010mor.2_Missense_Mutation_p.A153V|TRPM3_uc004aie.2_5'UTR|TRPM3_uc004aif.2_5'UTR|TRPM3_uc004aig.2_5'UTR|TRPM3_uc004aii.2_Missense_Mutation_p.A155V	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	153	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						TGATTACCATGGCTTTGTTGGA	0.396													20	35					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	9	78973755	78973755	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:78973755C>A	uc004akc.1	+	10	1976	c.1756C>A	c.(1756-1758)CGG>AGG	p.R586R						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		CACAGTCTACCGGAAATTTAA	0.478													10	102					0.000673444	0.00236585	0.000673444	1	0
PRUNE2	158471	broad.mit.edu	37	9	79441559	79441559	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:79441559G>A	uc010mpk.2	-	5	722	c.598C>T	c.(598-600)CCT>TCT	p.P200S	PRUNE2_uc004akn.2_Missense_Mutation_p.P200S	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	200					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GGCAAGTTAGGAAATTTTTCT	0.473													29	46					0	0	0.00106085	0	0
VPS13A	23230	broad.mit.edu	37	9	79890989	79890989	+	Silent	SNP	C	T	T	rs151122313		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:79890989C>T	uc004akr.2	+	26	2936	c.2676C>T	c.(2674-2676)ATC>ATT	p.I892I	VPS13A_uc004akp.3_Silent_p.I892I|VPS13A_uc004akq.3_Silent_p.I892I|VPS13A_uc004aks.2_Silent_p.I892I	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	892					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						AGGTTTTGATCGAGTTTTATC	0.323													36	64					0	0	0.000781405	0	0
FRMD3	257019	broad.mit.edu	37	9	86004545	86004545	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:86004545G>A	uc004ams.1	-	2	428	c.226C>T	c.(226-228)CGC>TGC	p.R76C	FRMD3_uc004amr.1_Missense_Mutation_p.R62C	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	76	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						TCCACATAGCGAATGCCAAAG	0.498													22	32					0	0	0.000720815	0	0
UBQLN1	29979	broad.mit.edu	37	9	86300962	86300962	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:86300962G>A	uc004amv.2	-	2	863	c.289C>T	c.(289-291)CAT>TAT	p.H97Y	UBQLN1_uc004amw.2_Missense_Mutation_p.H97Y	NM_013438	NP_038466	Q9UMX0	UBQL1_HUMAN	ubiquilin 1 isoform 1	97	Ubiquitin-like.				apoptosis|regulation of protein ubiquitination|response to hypoxia	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm|proteasome complex	kinase binding				0						AGTCCATCATGAATTCCATGC	0.328													19	32					0	0	0.000958276	0	0
SLC35D2	11046	broad.mit.edu	37	9	99107656	99107656	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:99107656G>A	uc004awc.2	-	7	592	c.516C>T	c.(514-516)GGC>GGT	p.G172G	SLC35D2_uc010msd.2_RNA|SLC35D2_uc010mse.2_Silent_p.G125G|SLC35D2_uc010msf.2_Intron|SLC35D2_uc004awd.2_Intron	NM_007001	NP_008932	Q76EJ3	S35D2_HUMAN	solute carrier family 35, member D2	172	Helical; (Potential).					Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity				0		Acute lymphoblastic leukemia(62;0.0167)				CAAAAATATAGCCTTCTAAGT	0.428													17	33					0	0	0.000958276	0	0
TSTD2	158427	broad.mit.edu	37	9	100380096	100380097	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:100380096_100380097GG>AA	uc004axn.2	-	4	1033_1034	c.545_546CC>TT	c.(544-546)CCC>CTT	p.P182L	TSTD2_uc004axo.2_5'UTR|TSTD2_uc004axp.1_5'UTR	NM_139246	NP_640339	Q5T7W7	TSTD2_HUMAN	thiosulfate sulfurtransferase (rhodanese)-like	182										ovary(2)	2						AGATCCATTGGGGATCCTCCAG	0.5													20	30					0	0	6.4e-05	0	0
COL15A1	1306	broad.mit.edu	37	9	101749577	101749577	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:101749577G>A	uc004azb.1	+	4	856	c.650G>A	c.(649-651)GGC>GAC	p.G217D		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	217	TSP N-terminal.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TTTCCCCAGGGCTCCCTCCAG	0.577													69	113					0	0	0.000781405	0	0
STX17	55014	broad.mit.edu	37	9	102722256	102722257	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:102722256_102722257CC>TT	uc004bal.3	+	5	609_610	c.473_474CC>TT	c.(472-474)GCC>GTT	p.A158V	STX17_uc010msx.2_Intron|STX17_uc011lvd.1_Intron	NM_017919	NP_060389	P56962	STX17_HUMAN	syntaxin 17	158	Cytoplasmic (Potential).				intracellular protein transport|vesicle-mediated transport	endoplasmic reticulum|integral to membrane|nucleolus	SNAP receptor activity			large_intestine(1)	1		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				CAGATATATGCCTTACCTGAAA	0.366													23	54					0	0	6.4e-05	0	0
MURC	347273	broad.mit.edu	37	9	103348428	103348428	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:103348428C>T	uc004bba.2	+	2	880	c.790C>T	c.(790-792)CCC>TCC	p.P264S		NM_001018116	NP_001018126	Q5BKX8	MURC_HUMAN	muscle-related coiled-coil protein	264					cell differentiation|muscle organ development|transcription, DNA-dependent					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0461)				TAATGCAGCTCCCTCAAAGGA	0.517													39	53					0	0	0.00148497	0	0
ZNF189	7743	broad.mit.edu	37	9	104171635	104171635	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:104171635C>T	uc004bbh.1	+	3	1861	c.1585C>T	c.(1585-1587)CGA>TGA	p.R529*	ZNF189_uc004bbg.1_Nonsense_Mutation_p.R487*|ZNF189_uc004bbi.1_Nonsense_Mutation_p.R515*|ZNF189_uc011lvk.1_Nonsense_Mutation_p.R514*	NM_003452	NP_003443	O75820	ZN189_HUMAN	zinc finger protein 189 isoform 1	529	C2H2-type 13.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|kidney(1)|central_nervous_system(1)	6		Acute lymphoblastic leukemia(62;0.0559)				TAATCTTATTCGACATCAGGG	0.423													20	25					0	0	0.00278032	0	0
OR13C4	138804	broad.mit.edu	37	9	107289317	107289317	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:107289317G>A	uc011lvn.1	-	1	174	c.174C>T	c.(172-174)CCC>CCT	p.P58P		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGAAGTACATGGGCATGTGAA	0.413													22	36					0	0	0.00278032	0	0
ACTL7B	10880	broad.mit.edu	37	9	111618082	111618082	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:111618082G>A	uc004bdi.2	-	1	194	c.129C>T	c.(127-129)CCC>CCT	p.P43P		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	43						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						GCACCTTCCTGGGCTTCATCT	0.647													63	78					0	0	0.000781405	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112918706	112918706	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:112918706C>T	uc004bej.3	+	9	3283	c.3103C>T	c.(3103-3105)CTG>TTG	p.L1035L	PALM2-AKAP2_uc004bek.3_Silent_p.L1035L|AKAP2_uc011lwi.1_Silent_p.L893L|AKAP2_uc004bem.2_Silent_p.L893L|AKAP2_uc011lwj.1_Silent_p.L804L|PALM2-AKAP2_uc004ben.2_Intron	NM_007203	NP_009134	Q9Y2D5	AKAP2_HUMAN	PALM2-AKAP2 protein isoform 1	804							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						GCCCAAGAATCTGATGCAGAC	0.512													19	37					0	0	0.00152264	0	0
SVEP1	79987	broad.mit.edu	37	9	113275290	113275290	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:113275290G>A	uc010mtz.2	-	5	1556	c.1219C>T	c.(1219-1221)CAC>TAC	p.H407Y	SVEP1_uc010mua.1_Missense_Mutation_p.H407Y|SVEP1_uc004beu.2_Missense_Mutation_p.H407Y|SVEP1_uc004bev.2_Missense_Mutation_p.H151Y	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	407	Sushi 1.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AATCCAGGGTGACATCGGACC	0.493													22	53					0	0	0.00229938	0	0
PAPPA	5069	broad.mit.edu	37	9	118997420	118997420	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:118997420C>T	uc004bjn.2	+	7	2617	c.2236C>T	c.(2236-2238)CAT>TAT	p.H746Y	PAPPA_uc011lxp.1_Missense_Mutation_p.H441Y|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	746					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CTGCATAGGTCATCCTGATGT	0.517													20	41					0	0	0.00047179	0	0
ASTN2	23245	broad.mit.edu	37	9	119770441	119770441	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:119770441G>A	uc004bjs.1	-	7	1622	c.1521C>T	c.(1519-1521)TCC>TCT	p.S507S	ASTN2_uc004bjr.1_Silent_p.S507S|ASTN2_uc004bjt.1_Silent_p.S456S	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	507	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TCACCCATGGGGAGGTGGCAT	0.572													22	28					0	0	0.001512	0	0
DBC1	1620	broad.mit.edu	37	9	121971167	121971167	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:121971167G>A	uc004bkc.2	-	7	1431	c.975C>T	c.(973-975)ATC>ATT	p.I325I		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	325					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GGATGCTTCCGATGGTCAGGA	0.522													22	43					0	0	0.00229938	0	0
PSMD5	5711	broad.mit.edu	37	9	123591436	123591436	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:123591436G>A	uc004bko.2	-	5	631	c.612C>T	c.(610-612)ACC>ACT	p.T204T	PSMD5_uc011lye.1_Silent_p.T161T	NM_005047	NP_005038	Q16401	PSMD5_HUMAN	proteasome 26S non-ATPase subunit 5	204					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|proteasome regulatory particle assembly|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding				0						ATCCACTTGTGGTACAGTAGT	0.383													41	59					0	0	0.000781405	0	0
OR1J2	26740	broad.mit.edu	37	9	125273126	125273126	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:125273126G>A	uc004bmj.1	+	4	901	c.46G>A	c.(46-48)GGC>AGC	p.G16S	OR1J2_uc011lyv.1_Missense_Mutation_p.G16S	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						CCTCCTTCTGGGCCTCCCCAT	0.557													33	65					0	0	0.00222228	0	0
OR1J4	26219	broad.mit.edu	37	9	125281530	125281530	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:125281530C>T	uc011lyw.1	+	1	111	c.111C>T	c.(109-111)ATC>ATT	p.I37I		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTACCTGATCACGGTGCTGG	0.562													19	87					0	0	0.000958276	0	0
OR1N2	138882	broad.mit.edu	37	9	125315566	125315566	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:125315566G>A	uc011lyx.1	+	1	118	c.118G>A	c.(118-120)GAG>AAG	p.E40K		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	40	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GTGGCCAGAGGAGCAGCCTCT	0.537													14	18					0	0	0.00185496	0	0
OR1L8	138881	broad.mit.edu	37	9	125330442	125330442	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:125330442G>A	uc004bmp.1	-	1	315	c.315C>T	c.(313-315)CTC>CTT	p.L105L		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						CCAAGGCATAGAGAAAATACA	0.498													13	43					0	0	0.000308642	0	0
OR1B1	347169	broad.mit.edu	37	9	125391017	125391017	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:125391017G>A	uc011lyz.1	-	1	798	c.798C>T	c.(796-798)TTC>TTT	p.F266F		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	266	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGGAGGCTGGAAGTAGACAC	0.522													14	38					0	0	0.000308642	0	0
CRB2	286204	broad.mit.edu	37	9	126132638	126132639	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:126132638_126132639GG>AA	uc004bnx.1	+	7	1398_1399	c.1306_1307GG>AA	c.(1306-1308)GGC>AAC	p.G436N	CRB2_uc004bnw.1_Missense_Mutation_p.G436N	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	436	Extracellular (Potential).|EGF-like 9.|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						ACCGTTCTGTGGCCAGAATACC	0.619													26	37					0	0	6.4e-05	0	0
TTC16	158248	broad.mit.edu	37	9	130489664	130489664	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:130489664C>T	uc004brq.1	+	12	1751	c.1684C>T	c.(1684-1686)CCG>TCG	p.P562S	PTRH1_uc011mah.1_5'Flank|TTC16_uc011mai.1_Missense_Mutation_p.P549S|TTC16_uc004brr.1_Missense_Mutation_p.P412S|TTC16_uc010mxn.1_Missense_Mutation_p.P158S	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	562							binding				0						CCCTGAGATTCCGCAGGTAAA	0.502													12	15					0	0	0.000308642	0	0
SH2D3C	10044	broad.mit.edu	37	9	130536314	130536314	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:130536314C>T	uc004bsc.2	-	2	612	c.470G>A	c.(469-471)GGA>GAA	p.G157E	SH2D3C_uc004bsa.2_5'Flank|SH2D3C_uc004bsb.2_5'Flank|SH2D3C_uc004bsd.1_Missense_Mutation_p.G101E	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	157					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TTCTACGTCTCCTGTGGGGAC	0.567													14	29					0	0	0.000422831	0	0
NUP188	23511	broad.mit.edu	37	9	131762069	131762069	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:131762069G>A	uc004bws.1	+	34	3850	c.3828G>A	c.(3826-3828)AGG>AGA	p.R1276R	NUP188_uc004bwu.2_Silent_p.R619R	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	1276					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						CCCGGCACAGGGACCAGCGTG	0.443													13	23					0	0	0.000308642	0	0
C9orf78	51759	broad.mit.edu	37	9	132591577	132591577	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:132591577G>A	uc004byp.2	-	8	757	c.685C>T	c.(685-687)CAT>TAT	p.H229Y	C9orf78_uc004byo.2_Missense_Mutation_p.H154Y|C9orf78_uc004byq.1_Missense_Mutation_p.H175Y	NM_016520	NP_057604	Q9NZ63	CI078_HUMAN	chromosome 9 open reading frame 78	229											0		Ovarian(14;0.00556)				AGCTCCTCATGATAAACTGGA	0.567													7	36					0	0	0.00198382	0	0
GPR107	57720	broad.mit.edu	37	9	132866738	132866738	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:132866738G>A	uc004bze.2	+	13	1398	c.1171G>A	c.(1171-1173)GAG>AAG	p.E391K	GPR107_uc004bzb.2_Missense_Mutation_p.E202K|GPR107_uc004bzc.3_RNA|GPR107_uc011mbx.1_Missense_Mutation_p.E391K|GPR107_uc004bzd.2_Missense_Mutation_p.E391K	NM_001136557	NP_001130029	Q5VW38	GP107_HUMAN	G protein-coupled receptor 107 isoform 1	391						integral to membrane				upper_aerodigestive_tract(1)	1		Ovarian(14;0.000531)				AGAGTCCACCGAGGAGGGCAC	0.517													15	25					0	0	0.000566183	0	0
ASS1	445	broad.mit.edu	37	9	133370318	133370318	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:133370318G>A	uc004bzm.2	+	14	1391	c.1035G>A	c.(1033-1035)GTG>GTA	p.V345V	ASS1_uc004bzn.2_Silent_p.V345V|ASS1_uc010mza.2_Silent_p.V421V|ASS1_uc004bzo.2_Silent_p.V326V|ASS1_uc010mzb.2_Silent_p.V383V|ASS1_uc004bzp.2_Silent_p.V345V|ASS1_uc010mzc.2_Silent_p.V345V	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	345			V -> G (in CTLN1).		arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	AGGAGCGAGTGGAAGGGAAAG	0.587													19	33					0	0	0.00152264	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516033	138516033	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:138516033C>T	uc010nbd.1	-	5	995	c.741G>A	c.(739-741)CTG>CTA	p.L247L		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	247	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		TAACTCCGTTCAGATATTCTT	0.383													25	85					0	0	0.000720815	0	0
KCNT1	57582	broad.mit.edu	37	9	138649043	138649043	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:138649043G>A	uc011mdq.1	+	8	716	c.642G>A	c.(640-642)CTG>CTA	p.L214L	KCNT1_uc011mdr.1_Silent_p.L41L|KCNT1_uc010nbf.2_Silent_p.L166L|KCNT1_uc004cgo.1_5'UTR	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	214						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		CCTTCGTCCTGGAGATGATCA	0.527													44	59					0	0	0.000781405	0	0
SNAPC4	6621	broad.mit.edu	37	9	139276502	139276502	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:139276502G>A	uc004chh.2	-	17	2100	c.2091C>T	c.(2089-2091)CCC>CCT	p.P697P		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	697					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		AGGTGGGCAGGGGTGGCTGCC	0.682													7	8					0	0	0.000274275	0	0
SEC16A	9919	broad.mit.edu	37	9	139371455	139371455	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr9:139371455G>A	uc004chx.2	-	3	922	c.613C>T	c.(613-615)CCT>TCT	p.P205S	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Missense_Mutation_p.P205S|SEC16A_uc010nbn.2_Missense_Mutation_p.P205S|SEC16A_uc010nbo.1_Missense_Mutation_p.P205S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	27					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CCAGGCTGAGGGAGGGAAGGG	0.657													23	33					0	0	0.00229938	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407442	1407442	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:1407442C>T	uc010nct.2	+	6	572	c.250C>T	c.(250-252)CGT>TGT	p.R84C	CSF2RA_uc011mhb.1_Missense_Mutation_p.R84C|CSF2RA_uc004cpq.2_Missense_Mutation_p.R84C|CSF2RA_uc004cpn.2_Missense_Mutation_p.R84C|CSF2RA_uc004cpo.2_Missense_Mutation_p.R84C|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_5'UTR|CSF2RA_uc004cpp.2_Missense_Mutation_p.R84C|CSF2RA_uc010ncv.2_Missense_Mutation_p.R84C|CSF2RA_uc004cpr.2_Missense_Mutation_p.R84C	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	84	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GTGCACATTTCGTGAAATTTG	0.378													80	396					0	0	0.000781405	0	0
P2RY8	286530	broad.mit.edu	37	X	1584969	1584969	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:1584969G>A	uc004cpz.2	-	2	731	c.483C>T	c.(481-483)ACC>ACT	p.T161T		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	161	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGGTGAGATCGGTGCGCGCCA	0.692			T	CRLF2	B-ALL|Downs associated ALL								5	29					0	0	0.00198382	0	0
P2RY8	286530	broad.mit.edu	37	X	1585120	1585120	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:1585120A>G	uc004cpz.2	-	2	580	c.332T>C	c.(331-333)ATC>ACC	p.I111T		NM_178129	NP_835230	Q86VZ1	P2RY8_HUMAN	G-protein coupled purinergic receptor P2Y8	111	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(5)	5		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CATGGTGAGGATGCTGGAATA	0.592			T	CRLF2	B-ALL|Downs associated ALL								7	25					0	0	0.000157383	0	0
MXRA5	25878	broad.mit.edu	37	X	3241612	3241612	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:3241612C>T	uc004crg.3	-	5	2271	c.2114G>A	c.(2113-2115)GGA>GAA	p.G705E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	705						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTCTTCATCTCCCATGCCCGA	0.517													7	14					0	0	0.000157383	0	0
TBL1X	6907	broad.mit.edu	37	X	9659683	9659683	+	Silent	SNP	C	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:9659683C>A	uc010ndq.2	+	8	1049	c.681C>A	c.(679-681)GTC>GTA	p.V227V	TBL1X_uc004csq.3_Silent_p.V176V|TBL1X_uc010ndr.2_Silent_p.V176V|TBL1X_uc004csr.2_Silent_p.V227V|TBL1X_uc004css.2_Silent_p.V178V	NM_001139466	NP_001132938	O60907	TBL1X_HUMAN	transducin beta-like 1X isoform a	227					canonical Wnt receptor signaling pathway|cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|sensory perception of sound|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein C-terminus binding|protein domain specific binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Hepatocellular(5;0.000888)				AAGCCACAGTCCTTCGGGGCC	0.522													17	28					9.7654e-05	0.000344155	0.000958276	1	0
SHROOM2	357	broad.mit.edu	37	X	9900857	9900857	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:9900857C>T	uc004csu.1	+	6	3624	c.3534C>T	c.(3532-3534)CCC>CCT	p.P1178P	SHROOM2_uc004csv.2_Silent_p.P13P|SHROOM2_uc011mic.1_Silent_p.P13P|SHROOM2_uc004csw.1_Silent_p.P13P	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1178					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				AGTTCGCCCCCCAGAAACTGA	0.632													6	16					0	0	0.00198382	0	0
PRPS2	5634	broad.mit.edu	37	X	12838834	12838834	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:12838834C>T	uc004cvb.2	+	6	900	c.776C>T	c.(775-777)TCC>TTC	p.S259F	PRPS2_uc004cva.2_Missense_Mutation_p.S262F|PRPS2_uc010nec.2_Missense_Mutation_p.S137F	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	259					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						CCAGCTATTTCCAGAATAAAT	0.438													21	41					0	0	0.00229938	0	0
ATXN3L	92552	broad.mit.edu	37	X	13337048	13337048	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:13337048C>T	uc010ned.2	-	1	1471	c.1006G>A	c.(1006-1008)GCC>ACC	p.A336T		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	336					protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						TCGACAGCGGCCTGTACTGTG	0.398													38	73					0	0	0.00222228	0	0
PIGA	5277	broad.mit.edu	37	X	15344151	15344151	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:15344151C>G	uc004cwr.2	-	3	833	c.733G>C	c.(733-735)GGT>CGT	p.G245R	PIGA_uc010neu.2_5'Flank|PIGA_uc004cwq.2_5'UTR|PIGA_uc010nev.2_Intron|PIGA_uc004cws.2_5'UTR|PIGA_uc011miq.1_Missense_Mutation_p.G11R|PIGA_uc010new.1_3'UTR	NM_002641	NP_002632	P37287	PIGA_HUMAN	phosphatidylinositol	245	Cytoplasmic (Potential).				C-terminal protein lipidation|positive regulation of metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity|protein binding				0	Hepatocellular(33;0.183)					GGTATTATACCACTAAGCAAA	0.318													3	88					0	0	6.4e-05	0	0
ACE2	59272	broad.mit.edu	37	X	15596283	15596283	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:15596283G>A	uc004cxa.1	-	9	1394	c.1226C>T	c.(1225-1227)TCA>TTA	p.S409L	ACE2_uc004cxb.2_Missense_Mutation_p.S409L	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	409	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	TGCAGAAAGTGACATGATTTC	0.413													8	17					0	0	0.000673444	0	0
BEND2	139105	broad.mit.edu	37	X	18238860	18238860	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:18238860C>G	uc004cyj.3	-	1	165	c.11G>C	c.(10-12)AGG>ACG	p.R4T	BEND2_uc010nfb.2_Missense_Mutation_p.R4T	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	4										ovary(3)|kidney(1)|central_nervous_system(1)	5						TTCCTGGGTCCTCTCTGACAT	0.612													20	52					0	0	0.00047179	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398107	23398107	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:23398107C>T	uc004dal.3	+	2	759	c.751C>T	c.(751-753)CCT>TCT	p.P251S	PTCHD1_uc010nfu.1_Missense_Mutation_p.P251S	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	251			P -> L.		cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						CAAAATGTACCCTTACACGTC	0.498													41	49					0	0	0.00195071	0	0
PTCHD1	139411	broad.mit.edu	37	X	23412144	23412144	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:23412144C>T	uc004dal.3	+	3	2517	c.2509C>T	c.(2509-2511)CAC>TAC	p.H837Y		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	837	Helical; (Potential).				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						CACCTTCTTTCACTGCTTTGC	0.418													15	30					0	0	0.000422831	0	0
ZFX	7543	broad.mit.edu	37	X	24197304	24197304	+	Silent	SNP	T	C	C			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:24197304T>C	uc004dbf.2	+	4	321	c.63T>C	c.(61-63)GCT>GCC	p.A21A	ZFX_uc004dbd.1_Silent_p.A21A|ZFX_uc010nfx.1_Intron|ZFX_uc004dbe.2_Silent_p.A21A|ZFX_uc011mjv.1_Silent_p.A60A|ZFX_uc010nfy.1_Silent_p.A21A	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	21					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						TTTAAGGAGCTGATGGTACAC	0.323													21	43					0	0	0.00229938	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212908	26212908	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:26212908G>A	uc004dbr.2	+	2	1094	c.945G>A	c.(943-945)GGG>GGA	p.G315G	MAGEB6_uc010ngc.1_Silent_p.G95G	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	315	MAGE.									ovary(3)	3						GTCTGTTGGGGATATATGATG	0.507													29	50					0	0	0.000953801	0	0
MAGEB6	158809	broad.mit.edu	37	X	26213017	26213017	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:26213017C>T	uc004dbr.2	+	2	1203	c.1054C>T	c.(1054-1056)CCT>TCT	p.P352S	MAGEB6_uc010ngc.1_Missense_Mutation_p.P132S	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	352	MAGE.									ovary(3)	3						CAACAGTGATCCTCCATGCTA	0.512													12	14					0	0	0.00136819	0	0
TAB3	257397	broad.mit.edu	37	X	30871041	30871041	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:30871041G>A	uc004dcj.2	-	7	2227	c.1564C>T	c.(1564-1566)CAA>TAA	p.Q522*	TAB3_uc004dck.2_Nonsense_Mutation_p.Q522*|TAB3_uc010ngl.2_Nonsense_Mutation_p.Q522*	NM_152787	NP_690000	Q8N5C8	TAB3_HUMAN	mitogen-activated protein kinase kinase kinase 7	522	Potential.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein binding|zinc ion binding			ovary(1)	1						CTTGCTCGTTGATGTAACAGC	0.403													6	14					0	0	0.00198382	0	0
FAM47A	158724	broad.mit.edu	37	X	34149583	34149583	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:34149583C>T	uc004ddg.2	-	1	846	c.813G>A	c.(811-813)AGG>AGA	p.R271R		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	271										ovary(4)|central_nervous_system(1)	5						CTTCCAGCTTCCTCTCAGAAT	0.582													6	14					0	0	0.00198382	0	0
CXorf22	170063	broad.mit.edu	37	X	35944269	35944269	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:35944269G>A	uc004ddj.2	+	2	444	c.385G>A	c.(385-387)GAA>AAA	p.E129K	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	129										large_intestine(1)|lung(1)|ovary(1)	3						TAAAACAACAGAAATTCCTCT	0.323													8	11					0	0	0.000157383	0	0
FAM47C	442444	broad.mit.edu	37	X	37028638	37028638	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:37028638C>T	uc004ddl.1	+	1	2169	c.2155C>T	c.(2155-2157)CCT>TCT	p.P719S		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	719										ovary(3)	3						CGCGGAGCCTCCTGAGAGTCG	0.642													5	16					0	0	0.000602214	0	0
KDM6A	7403	broad.mit.edu	37	X	44942739	44942739	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:44942739C>T	uc004dge.3	+	23	3694	c.3319C>T	c.(3319-3321)CCT>TCT	p.P1107S	KDM6A_uc011mkz.1_Missense_Mutation_p.P1159S|KDM6A_uc011mla.1_Missense_Mutation_p.P1062S|KDM6A_uc011mlb.1_Missense_Mutation_p.P1114S|KDM6A_uc011mlc.1_Missense_Mutation_p.P811S|KDM6A_uc011mld.1_Missense_Mutation_p.P746S	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	1107	JmjC.				histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						GACTAAACTTCCTGCTTTTGT	0.403			D|N|F|S		renal|oesophageal SCC|MM								11	15					0	0	0.00185496	0	0
USP11	8237	broad.mit.edu	37	X	47106753	47106753	+	Missense_Mutation	SNP	C	T	T	rs140077263	byFrequency	TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:47106753C>T	uc004dhp.2	+	19	2600	c.2600C>T	c.(2599-2601)CCG>CTG	p.P867L	USP11_uc004dhq.2_Missense_Mutation_p.P593L	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	867					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GAGTCGAATCCGGAGCTGTAC	0.567													17	23					0	0	0.000958276	0	0
GATA1	2623	broad.mit.edu	37	X	48650317	48650317	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:48650317G>A	uc004dkq.3	+	3	378	c.287G>A	c.(286-288)TGG>TAG	p.W96*		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	96					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)|p.V74_C199del(1)|p.V77_A120>A(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						TATGCCGGCTGGGCCTACGGC	0.602			Mis|F		megakaryoblastic leukemia of Downs Syndrome								6	9					0	0	0.00116845	0	0
PLP2	5355	broad.mit.edu	37	X	49029740	49029740	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:49029740C>T	uc004dmx.2	+	3	330	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_002668	NP_002659	Q04941	PLP2_HUMAN	proteolipid protein 2 (colonic	85	Helical; (Potential).|MARVEL.				chemotaxis|cytokine-mediated signaling pathway	endoplasmic reticulum membrane|integral to membrane|membrane fraction|plasma membrane	chemokine binding|ion transmembrane transporter activity				0						CACAGGATTTCTTCCGAACCC	0.532													9	18					0	0	0.00185496	0	0
EDA2R	60401	broad.mit.edu	37	X	65819657	65819657	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:65819657G>A	uc004dwq.2	-	5	574	c.563C>T	c.(562-564)TCT>TTT	p.S188F	EDA2R_uc004dwr.2_Missense_Mutation_p.S188F|EDA2R_uc004dws.2_Missense_Mutation_p.S188F|EDA2R_uc011mpb.1_RNA|EDA2R_uc011mpc.1_Missense_Mutation_p.S64F|EDA2R_uc010nkt.1_Missense_Mutation_p.S188F|EDA2R_uc004dwt.1_Missense_Mutation_p.S209F	NM_021783	NP_068555	Q9HAV5	TNR27_HUMAN	X-linked ectodysplasin receptor	188	Cytoplasmic (Potential).				cell differentiation|embryo development|epidermis development|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	tumor necrosis factor receptor activity			upper_aerodigestive_tract(1)	1						GGGGAAGAGAGATTCCTCCTT	0.532													5	6					0	0	0.00116845	0	0
TEX11	56159	broad.mit.edu	37	X	69773205	69773205	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:69773205C>T	uc004dyl.2	-	28	2557	c.2395G>A	c.(2395-2397)GCT>ACT	p.A799T	TEX11_uc004dyk.2_Missense_Mutation_p.A474T|TEX11_uc004dym.2_Missense_Mutation_p.A784T	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	799							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					AGCAATAAAGCCTTTTTCAAG	0.348													4	9					0	0	0.00024832	0	0
TEX11	56159	broad.mit.edu	37	X	69964064	69964064	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:69964064C>T	uc004dyl.2	-	11	905	c.743G>A	c.(742-744)AGC>AAC	p.S248N	TEX11_uc004dym.2_Missense_Mutation_p.S233N	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	248							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					AATATCATAGCTTTGGCTATC	0.244													4	14					0	0	0.00024832	0	0
PHKA1	5255	broad.mit.edu	37	X	71846820	71846820	+	Splice_Site	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:71846820C>T	uc004eax.3	-	17	2094	c.1793_splice	c.e17+1	p.R598_splice	PHKA1_uc004eay.3_Splice_Site_p.R598_splice|PHKA1_uc011mqi.1_Splice_Site_p.R598_splice	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform						glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					AGGTCACTTACCTTGCCCCAC	0.378													18	30					0	0	0.00074312	0	0
PHKA1	5255	broad.mit.edu	37	X	71925095	71925095	+	Splice_Site	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:71925095C>T	uc004eax.3	-	3	539	c.238_splice	c.e3-1	p.S80_splice	PHKA1_uc004eay.3_Splice_Site_p.S80_splice|PHKA1_uc011mqi.1_Splice_Site_p.S80_splice	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform						glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					TCACTACACTCTGCAGAAATA	0.383													18	37					0	0	0.00229938	0	0
TSIX	9383	broad.mit.edu	37	X	73041824	73041824	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:73041824G>A	uc004ebn.2	+	1		c.29785G>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CGTTATCTGAGGATTGTTTCT	0.333													6	12					0	0	0.00198382	0	0
XIST	7503	broad.mit.edu	37	X	73063611	73063611	+	RNA	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:73063611C>T	uc004ebm.1	-	1		c.8978G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TAGGTAGGATCCTTATCTAGT	0.403													5	22					0	0	0.000602214	0	0
XIST	7503	broad.mit.edu	37	X	73063632	73063632	+	RNA	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:73063632G>A	uc004ebm.1	-	1		c.8957C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCACAGATCAGGAGCAAATGT	0.423													6	20					0	0	0.00116845	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962622	73962622	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:73962622C>T	uc004eby.2	-	3	2387	c.1770G>A	c.(1768-1770)AAG>AAA	p.K590K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	590					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GCTTCTTCTTCTTTTGCCAGA	0.458													5	10					0	0	0.000602214	0	0
POF1B	79983	broad.mit.edu	37	X	84563138	84563138	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:84563138C>T	uc004eer.2	-	10	1188	c.1042G>A	c.(1042-1044)GAT>AAT	p.D348N	POF1B_uc004ees.2_Missense_Mutation_p.D348N	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	348	Potential.						actin binding				0						ACTGTCATATCATTTTGAAGA	0.358													5	8					0	0	0.000602214	0	0
SRPX2	27286	broad.mit.edu	37	X	99919927	99919927	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:99919927G>A	uc004egb.2	+	5	992	c.512G>A	c.(511-513)GGA>GAA	p.G171E		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	171	Sushi 2.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						AGATGGAGTGGAGGCGAGCCT	0.522													4	7					0	0	0.000602214	0	0
GLRA4	441509	broad.mit.edu	37	X	102974059	102974059	+	Missense_Mutation	SNP	G	A	A	rs111758425		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:102974059G>A	uc011mse.1	-	7	1280	c.859C>T	c.(859-861)CGT>TGT	p.R287C	GLRA4_uc010nou.2_Missense_Mutation_p.R287C	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	287	Cytoplasmic (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						AGGCCCACACGGGCAGGGGCA	0.577													20	27					0	0	0.000958276	0	0
NRK	203447	broad.mit.edu	37	X	105179275	105179275	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:105179275G>A	uc004emd.2	+	21	3916	c.3613G>A	c.(3613-3615)GAA>AAA	p.E1205K	NRK_uc010npc.1_Missense_Mutation_p.E873K	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1205							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						CCACATGTATGAAAAGGAGTT	0.383										HNSCC(51;0.14)			5	13					0	0	0.000602214	0	0
NRK	203447	broad.mit.edu	37	X	105190359	105190359	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:105190359C>T	uc004emd.2	+	26	4559	c.4256C>T	c.(4255-4257)TCT>TTT	p.S1419F	NRK_uc011msi.1_5'Flank	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1419	CNH.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GCTATTGGTTCTGAAAAAAGA	0.393										HNSCC(51;0.14)			9	21					0	0	0.000274275	0	0
MID2	11043	broad.mit.edu	37	X	107084487	107084487	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:107084487C>T	uc004enl.2	+	2	1165	c.592C>T	c.(592-594)CAT>TAT	p.H198Y	MID2_uc004enk.2_Missense_Mutation_p.H198Y	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	198	B box-type 2.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						CTGCCTGGACCATGAGAATGA	0.537													13	18					0	0	0.00244969	0	0
GUCY2F	2986	broad.mit.edu	37	X	108684702	108684702	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:108684702G>A	uc004eod.3	-	7	1855	c.1579C>T	c.(1579-1581)CGT>TGT	p.R527C	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	527	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						ACACTGGCACGACTTCCTCTC	0.408													43	64					0	0	0.000781405	0	0
RGAG1	57529	broad.mit.edu	37	X	109694148	109694148	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:109694148C>T	uc004eor.1	+	3	549	c.303C>T	c.(301-303)TCC>TCT	p.S101S	RGAG1_uc011msr.1_Silent_p.S101S	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	101										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GGGCACTTTCCCCATTGCTAA	0.532													33	40					0	0	0.00111076	0	0
CAPN6	827	broad.mit.edu	37	X	110489950	110489950	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:110489950C>T	uc004epc.1	-	13	1949	c.1781G>A	c.(1780-1782)GGG>GAG	p.G594E	CAPN6_uc011msu.1_Missense_Mutation_p.G339E	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	594	C2.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						AGTAACCTGCCCCAAGAACTG	0.527													10	12					0	0	0.000673444	0	0
TRPC5	7224	broad.mit.edu	37	X	111090344	111090344	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:111090344G>A	uc004epl.1	-	6	2617	c.1698C>T	c.(1696-1698)TCC>TCT	p.S566S	TRPC5_uc004epm.1_Silent_p.S566S	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	566	Extracellular (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CGTCTTACGTGGAGAAGGCAT	0.403													25	55					0	0	0.000878237	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698219	111698219	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:111698219C>G	uc004epo.1	+	3	704	c.263C>G	c.(262-264)TCT>TGT	p.S88C		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	88							nucleic acid binding|zinc ion binding			ovary(1)	1						CTCCAAATCTCTAATCCTGCA	0.448													11	22					0	0	0.00136819	0	0
HTR2C	3358	broad.mit.edu	37	X	113965940	113965940	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:113965940C>T	uc004epu.1	+	4	1001	c.273C>T	c.(271-273)TTC>TTT	p.F91F	HTR2C_uc010nqc.1_Silent_p.F91F|HTR2C_uc004epv.1_Silent_p.F91F	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	91	Helical; Name=2; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	CCAATTACTTCTTAATGTCCC	0.398													17	42					0	0	0.000566183	0	0
AGTR2	186	broad.mit.edu	37	X	115303666	115303666	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:115303666G>A	uc004eqh.3	+	3	340	c.133G>A	c.(133-135)GAT>AAT	p.D45N		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	45	Extracellular (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						TAAGCATTTAGATGCAATTCC	0.373													8	13					0	0	0.000673444	0	0
KLHL13	90293	broad.mit.edu	37	X	117033149	117033149	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:117033149G>A	uc004eql.2	-	7	1752	c.1690C>T	c.(1690-1692)CTT>TTT	p.L564F	KLHL13_uc004eqk.2_Missense_Mutation_p.L513F|KLHL13_uc011mtn.1_Missense_Mutation_p.L404F|KLHL13_uc011mto.1_Missense_Mutation_p.L558F|KLHL13_uc011mtp.1_Missense_Mutation_p.L566F|KLHL13_uc004eqm.2_Missense_Mutation_p.L513F|KLHL13_uc011mtq.1_Missense_Mutation_p.L548F	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	564	Kelch 5.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CACTGGTCAAGGATAGGTGAA	0.453													14	25					0	0	0.00244969	0	0
KLHL13	90293	broad.mit.edu	37	X	117053535	117053535	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:117053535G>A	uc004eql.2	-	4	581	c.519C>T	c.(517-519)TTC>TTT	p.F173F	KLHL13_uc004eqk.2_Silent_p.F122F|KLHL13_uc011mtn.1_Silent_p.F13F|KLHL13_uc011mto.1_Silent_p.F167F|KLHL13_uc011mtp.1_Silent_p.F175F|KLHL13_uc004eqm.2_Silent_p.F122F|KLHL13_uc011mtq.1_Silent_p.F157F	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	173					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GAATCTGTAGGAAACTGGCAG	0.383													30	43					0	0	0.00178596	0	0
LONRF3	79836	broad.mit.edu	37	X	118151570	118151570	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:118151570C>T	uc004eqw.2	+	11	2228	c.2197C>T	c.(2197-2199)CCC>TCC	p.P733S	LONRF3_uc004eqx.2_Missense_Mutation_p.P692S|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Missense_Mutation_p.P477S	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	733	Lon.				proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						AGCTCAGCTCCCCTTCCTAGC	0.507													11	23					0	0	0.000673444	0	0
ODZ1	10178	broad.mit.edu	37	X	123654524	123654524	+	Silent	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:123654524C>T	uc004euj.2	-	18	3208	c.3144G>A	c.(3142-3144)ACG>ACA	p.T1048T	ODZ1_uc011muj.1_Silent_p.T1047T|ODZ1_uc010nqy.2_Silent_p.T1048T	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1048	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTACAGGAATCGTTGAATGTG	0.493													9	32					0	0	0.000274275	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130215780	130215780	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:130215780G>A	uc004evz.2	+	2	486	c.141G>A	c.(139-141)ACG>ACA	p.T47T	ARHGAP36_uc004ewa.2_Silent_p.T35T|ARHGAP36_uc004ewb.2_Silent_p.T16T|ARHGAP36_uc004ewc.2_5'Flank	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	47					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						ACCGCAGGACGAAGATGGTAT	0.537													38	81					0	0	0.0025221	0	0
FRMD7	90167	broad.mit.edu	37	X	131228089	131228089	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:131228089C>T	uc004ewn.2	-	5	541	c.363G>A	c.(361-363)ATG>ATA	p.M121I	FRMD7_uc011muy.1_Missense_Mutation_p.M106I	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	121	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TGTGAGATACCATCAACGCTG	0.443													24	36					0	0	0.00178596	0	0
FGF13	2258	broad.mit.edu	37	X	137717808	137717808	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:137717808G>A	uc004fam.2	-	4	1073	c.411C>T	c.(409-411)TTC>TTT	p.F137F	FGF13_uc004fan.2_Silent_p.F84F|FGF13_uc011mwi.1_Silent_p.F118F|FGF13_uc004faq.2_Silent_p.F147F|FGF13_uc004far.2_Silent_p.F118F|FGF13_uc011mwj.1_Silent_p.F147F|FGF13_uc011mwk.1_Silent_p.F91F	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	137					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					ACTCAGGTGTGAAAAGTTCCT	0.358													7	5					0	0	0.00198382	0	0
FGF13	2258	broad.mit.edu	37	X	137717816	137717816	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:137717816C>T	uc004fam.2	-	4	1065	c.403G>A	c.(403-405)GAA>AAA	p.E135K	FGF13_uc004fan.2_Missense_Mutation_p.E82K|FGF13_uc011mwi.1_Missense_Mutation_p.E116K|FGF13_uc004faq.2_Missense_Mutation_p.E145K|FGF13_uc004far.2_Missense_Mutation_p.E116K|FGF13_uc011mwj.1_Missense_Mutation_p.E145K|FGF13_uc011mwk.1_Missense_Mutation_p.E89K	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	135					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTGAAAAGTTCCTGCAACAAA	0.348													6	5					0	0	0.00116845	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993277	140993277	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:140993277G>A	uc004fbt.2	+	4	373	c.87G>A	c.(85-87)GAG>GAA	p.E29E	MAGEC1_uc010nsl.1_5'UTR	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	29							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTGAGGGGGAGGACTCCCAGT	0.572										HNSCC(15;0.026)			14	17					0	0	0.00244969	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718375	142718375	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:142718375C>T	uc004fbx.2	-	2	926	c.550G>A	c.(550-552)GAT>AAT	p.D184N	SLITRK4_uc004fby.2_Missense_Mutation_p.D184N	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	184	Extracellular (Potential).|LRR 6.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCGTATATCCAGATGGGTC	0.418													18	27					0	0	0.000958276	0	0
GPR50	9248	broad.mit.edu	37	X	150348569	150348569	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:150348569G>A	uc010ntg.1	+	2	649	c.514G>A	c.(514-516)GAT>AAT	p.D172N	uc004fes.1_5'Flank|GPR50_uc011myc.1_Missense_Mutation_p.D172N	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	172	Extracellular (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CATCGAGTACGATCCTCGCAC	0.527													41	54					0	0	0.00170553	0	0
PASD1	139135	broad.mit.edu	37	X	150841117	150841117	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:150841117G>A	uc004fev.3	+	14	2232	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	634						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGGGCAACAGGAAGATGAGAG	0.473													11	23					0	0	0.00136819	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303995	151303995	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:151303995G>A	uc004ffk.2	-	5	506	c.98C>T	c.(97-99)GCT>GTT	p.A33V	MAGEA10_uc004ffl.2_Missense_Mutation_p.A33V	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	33											0	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCTCCACAGCCAGGGGAGC	0.413													17	18					0	0	0.000566183	0	0
PDZD4	57595	broad.mit.edu	37	X	153069158	153069158	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:153069158G>A	uc004fiz.1	-	8	2210	c.1960C>T	c.(1960-1962)CGG>TGG	p.R654W	PDZD4_uc004fiy.1_Missense_Mutation_p.R579W|PDZD4_uc004fix.2_Missense_Mutation_p.R558W|PDZD4_uc004fja.1_Missense_Mutation_p.R660W|PDZD4_uc011mze.1_Missense_Mutation_p.R545W	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	654						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGCTCCTCCCGGATCTTCAGG	0.652													25	40					0	0	0.000720815	0	0
HCFC1	3054	broad.mit.edu	37	X	153219121	153219121	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:153219121G>A	uc004fjp.2	-	18	4962	c.4434C>T	c.(4432-4434)TCC>TCT	p.S1478S		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1478					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCGTCAGTGTGGAGGACACGG	0.672													20	18					0	0	0.00188189	0	0
HCFC1	3054	broad.mit.edu	37	X	153222148	153222148	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:153222148G>A	uc004fjp.2	-	15	3091	c.2563C>T	c.(2563-2565)CGC>TGC	p.R855C		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	855	Interaction with ZBTB17.|Interaction with GABP2.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GTGACCAGGCGAACACCCCCC	0.642													19	26					0	0	0.00278032	0	0
IRAK1	3654	broad.mit.edu	37	X	153283471	153283471	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:153283471G>A	uc004fjs.1	-	7	974	c.895C>T	c.(895-897)CGT>TGT	p.R299C	IRAK1_uc004fjr.1_Missense_Mutation_p.R299C|IRAK1_uc004fjt.1_Missense_Mutation_p.R299C|IRAK1_uc010nur.2_Intron|IRAK1_uc004fju.2_Missense_Mutation_p.R325C	NM_001569	NP_001560	P51617	IRAK1_HUMAN	interleukin-1 receptor-associated kinase 1	299	Protein kinase.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|lipopolysaccharide-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein autophosphorylation|protein oligomerization|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transmembrane receptor protein serine/threonine kinase signaling pathway	cytosol|endosome membrane|interleukin-1 receptor complex	ATP binding|NF-kappaB-inducing kinase activity|protein binding|protein heterodimerization activity|protein homodimerization activity|ubiquitin-protein ligase activity			lung(5)|ovary(2)|breast(1)|central_nervous_system(1)	9	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CAGTGGAGACGGTCCTCCAGG	0.632													20	30					0	0	0.00278032	0	0
TKTL1	8277	broad.mit.edu	37	X	153543534	153543534	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:153543534G>A	uc004fkg.2	+	7	1062	c.876G>A	c.(874-876)CGG>CGA	p.R292R	TKTL1_uc011mzl.1_Silent_p.R286R|TKTL1_uc011mzm.1_Silent_p.R88R|TKTL1_uc004fkh.2_Silent_p.R236R	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	292					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TAGCTACTCGGAAAGCATGCG	0.458													31	40					0	0	0.0024448	0	0
F8	2157	broad.mit.edu	37	X	154133271	154133271	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:154133271G>A	uc004fmt.2	-	16	5572	c.5401C>T	c.(5401-5403)CCC>TCC	p.P1801S	F8_uc010nvi.1_Intron	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1801	F5/8 type A 3.|Plastocyanin-like 5.		P -> A (in HEMA; mild).		acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AAGGAATAGGGACGAGAGGCC	0.363													12	21					0	0	0.000978159	0	0
F8	2157	broad.mit.edu	37	X	154159549	154159549	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:154159549G>A	uc004fmt.2	-	14	2687	c.2516C>T	c.(2515-2517)CCA>CTA	p.P839L		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	839	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TCCAGGTGATGGATCATCAGA	0.453													5	14					0	0	0.00116845	0	0
VAMP7	6845	broad.mit.edu	37	X	155169448	155169448	+	Silent	SNP	C	T	T	rs138653672		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrX:155169448C>T	uc004fnr.2	+	7	759	c.585C>T	c.(583-585)ATC>ATT	p.I195I	VAMP7_uc004fnt.2_Silent_p.I154I|VAMP7_uc011naa.1_Silent_p.I156I|VAMP7_uc011nab.1_Silent_p.I94I|VAMP7_uc004fns.2_Missense_Mutation_p.R173C|VAMP7_uc011nac.1_Silent_p.I128I	NM_005638	NP_005629	P51809	VAMP7_HUMAN	vesicle-associated membrane protein 7 isoform 1	195	Helical; Anchor for type IV membrane protein; (Potential).				calcium ion-dependent exocytosis|endosome to lysosome transport|eosinophil degranulation|ER to Golgi vesicle-mediated transport|neutrophil degranulation|phagocytosis, engulfment|post-Golgi vesicle-mediated transport|protein transport|vesicle fusion	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|phagocytic vesicle membrane|plasma membrane|SNARE complex|transport vesicle membrane	protein binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TCATCATCATCGTATCAATTG	0.348													19	138					0	0	0.00229938	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16942109	16942109	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrY:16942109G>A	uc004ftg.2	+	5	1563	c.1311G>A	c.(1309-1311)CGG>CGA	p.R437R	NLGN4Y_uc004fte.2_Silent_p.R269R|NLGN4Y_uc011nas.1_Silent_p.R457R|NLGN4Y_uc004ftf.2_Silent_p.R130R|NLGN4Y_uc004fth.2_Silent_p.R437R	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	437	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						AGACGCGGCGGAAAACCCTGG	0.587													11	13					0	0	0.00074312	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16952792	16952792	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrY:16952792G>A	uc004ftg.2	+	6	2353	c.2101G>A	c.(2101-2103)GAC>AAC	p.D701N	NLGN4Y_uc004fte.2_Missense_Mutation_p.D533N|NLGN4Y_uc011nas.1_Missense_Mutation_p.D721N|NLGN4Y_uc004ftf.2_Missense_Mutation_p.D394N|NLGN4Y_uc004fth.2_Missense_Mutation_p.D701N	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	701	Cytoplasmic (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						CTACAAAAAGGACAAGAGGCG	0.502													19	23					0	0	0.00074312	0	0
KDM5D	8284	broad.mit.edu	37	Y	21877756	21877756	+	Silent	SNP	G	A	A			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chrY:21877756G>A	uc004fug.2	-	16	2454	c.2166C>T	c.(2164-2166)TCC>TCT	p.S722S	KDM5D_uc011naz.1_Silent_p.S753S|KDM5D_uc010nwy.2_Silent_p.S665S|KDM5D_uc011nba.1_Silent_p.S722S|KDM5D_uc004fuf.2_5'Flank	NM_004653	NP_004644	Q9BY66	KDM5D_HUMAN	jumonji, AT rich interactive domain 1D isoform	722					chromatin modification|spermatogenesis	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1					Vitamin C(DB00126)	CATTGATGTGGGAAAGGCATA	0.557													12	17					0	0	0.00244969	0	0
LCE5A	254910	broad.mit.edu	37	1	152484024	152484024	+	Frame_Shift_Del	DEL	A	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr1:152484024delA	uc001ezy.2	+	2	190	c.14delA	c.(13-15)CAGfs	p.Q5fs	CRCT1_uc001ezz.2_5'Flank	NM_178438	NP_848525	Q5TCM9	LCE5A_HUMAN	late cornified envelope 5A	5	Cys-rich.				keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTGCCAGCAGAGCCAGCAG	0.368													14	56	---	---	---	---					
PLXNC1	10154	broad.mit.edu	37	12	94673258	94673258	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr12:94673258delT	uc001tdc.2	+	22	3857	c.3608delT	c.(3607-3609)GTCfs	p.V1203fs	PLXNC1_uc010sut.1_Frame_Shift_Del_p.V250fs|PLXNC1_uc009zsv.2_5'UTR	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1203	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						GCATTAAACGTCGTCTTTGAA	0.408													22	43	---	---	---	---					
IRF9	10379	broad.mit.edu	37	14	24633132	24633134	+	In_Frame_Del	DEL	AGC	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr14:24633132_24633134delAGC	uc001wmq.2	+	5	668_670	c.541_543delAGC	c.(541-543)AGCdel	p.S187del	RNF31_uc001wmp.2_RNA|IRF9_uc010alj.2_In_Frame_Del_p.S85del	NM_006084	NP_006075	Q00978	IRF9_HUMAN	interferon-stimulated transcription factor 3,	187	Poly-Ser.				interferon-gamma-mediated signaling pathway|response to virus|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|nucleoplasm	DNA binding|identical protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00853)		AGACATTGGGagcagcagcagca	0.448													7	72	---	---	---	---					
C16orf74	404550	broad.mit.edu	37	16	85743879	85743881	+	In_Frame_Del	DEL	GCT	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr16:85743879_85743881delGCT	uc002fjc.3	-	3	237_239	c.61_63delAGC	c.(61-63)AGCdel	p.S21del		NM_206967	NP_996850	Q96GX8	CP074_HUMAN	MGC17624 protein	21											0						CCTCGTCGTGGCTGCTGCTGCTG	0.635													3	6	---	---	---	---					
APOB	338	broad.mit.edu	37	2	21224642	21224649	+	Frame_Shift_Del	DEL	TAGGGGTT	-	-	rs145832414		TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr2:21224642_21224649delTAGGGGTT	uc002red.2	-	29	13773_13780	c.13645_13652delAACCCCTA	c.(13645-13653)AACCCCTACfs	p.N4549fs		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4549_4551					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAGCTTCATGTAGGGGTTCATGACTGTG	0.356													58	306	---	---	---	---					
ZNF831	128611	broad.mit.edu	37	20	57829145	57829145	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr20:57829145delC	uc002yan.2	+	5	4381	c.4381delC	c.(4381-4383)CCCfs	p.P1461fs		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1461						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CTCAACAGATCCCAAACCATA	0.527													33	43	---	---	---	---					
FEM1C	56929	broad.mit.edu	37	5	114860413	114860413	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:114860413delG	uc003krb.1	-	3	2008	c.1446delC	c.(1444-1446)AACfs	p.N482fs		NM_020177	NP_064562	Q96JP0	FEM1C_HUMAN	feminization 1 homolog a	482	ANK 8.					cytoplasm				breast(2)|ovary(1)	3		all_cancers(142;0.000575)|all_epithelial(76;9.98e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;2.5e-07)|Epithelial(69;2.66e-07)|all cancers(49;1.39e-05)		GAGGGCTGAAGTTATTCTTTC	0.398													7	69	---	---	---	---					
FAM53C	51307	broad.mit.edu	37	5	137680962	137680967	+	In_Frame_Del	DEL	CCTGGC	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:137680962_137680967delCCTGGC	uc003lcv.2	+	4	1055_1060	c.585_590delCCTGGC	c.(583-591)AGCCTGGCC>AGC	p.LA198del	FAM53C_uc003lcw.2_In_Frame_Del_p.LA198del|FAM53C_uc011cyq.1_Intron|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	198_199										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CTTTCTTCAGCCTGGCCCTGGCCCAA	0.636													22	257	---	---	---	---					
ADRA1B	147	broad.mit.edu	37	5	159399204	159399204	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr5:159399204delC	uc003lxt.1	+	2	1441	c.1268delC	c.(1267-1269)TCGfs	p.S423fs		NM_000679	NP_000670	P35368	ADA1B_HUMAN	alpha-1B-adrenergic receptor	423	Cytoplasmic (By similarity).				cell proliferation|cell-cell signaling|G-protein signaling, coupled to cAMP nucleotide second messenger|intracellular protein kinase cascade	integral to plasma membrane	alpha1-adrenergic receptor activity			lung(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Modafinil(DB00745)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Olanzapine(DB00334)|Phendimetrazine(DB01579)|Phenylephrine(DB00388)|Prazosin(DB00457)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Trazodone(DB00656)	ACCCTGCCCTCGGCCTCGCCG	0.771													2	4	---	---	---	---					
CDK13	8621	broad.mit.edu	37	7	39991038	39991038	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A26C-01A-11D-A19A-08	TCGA-GN-A26C-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2774050-1257-4c29-b201-d79ce70fe17e	ca8bfcec-4721-46d0-8c5a-7ac30d86e424	g.chr7:39991038delC	uc003thh.3	+	1	1080	c.798delC	c.(796-798)AGCfs	p.S266fs	CDK13_uc003thi.3_Frame_Shift_Del_p.S266fs	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	266					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						CCACATCCAGCAGCAGTAGCA	0.592													2	4	---	---	---	---					
