Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P9	11223	broad.mit.edu	37	1	17086183	17086183	+	Splice_Site	SNP	T	G	G	rs61769735		TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr1:17086183T>G	uc010ock.1	-	7	716	c.716_splice	c.e7-1	p.G239_splice	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Splice_Site	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCTCGGACCCTTAGATGGACC	0.652													3	20					0	0	0.00024832	0	0
ELAVL4	1996	broad.mit.edu	37	1	50659525	50659525	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr1:50659525T>C	uc001csb.2	+	4	711	c.443T>C	c.(442-444)CTG>CCG	p.L148P	ELAVL4_uc001cry.3_Missense_Mutation_p.L151P|ELAVL4_uc001crz.3_Missense_Mutation_p.L148P|ELAVL4_uc001csa.3_Missense_Mutation_p.L165P|ELAVL4_uc001csc.3_Missense_Mutation_p.L148P|ELAVL4_uc009vyu.2_Missense_Mutation_p.L153P|ELAVL4_uc010omz.1_Missense_Mutation_p.L153P	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	148	RRM 2.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						CAGAAGGAACTGGAGCAACTT	0.468													4	11					0	0	0.00024832	0	0
FAM20B	9917	broad.mit.edu	37	1	179041253	179041253	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr1:179041253G>C	uc001gmc.2	+	8	1497	c.1204G>C	c.(1204-1206)GAC>CAC	p.D402H		NM_014864	NP_055679	O75063	XYLK_HUMAN	hypothetical protein LOC9917 precursor	402	Lumenal (Potential).					Golgi membrane|integral to membrane	ATP binding|kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(3)	3						ACTGGTGGAAGACAGGATGCC	0.478													3	34					0	0	6.4e-05	0	0
PRG4	10216	broad.mit.edu	37	1	186276689	186276689	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr1:186276689C>G	uc001gru.3	+	7	1889	c.1838C>G	c.(1837-1839)CCC>CGC	p.P613R	PRG4_uc001grt.3_Missense_Mutation_p.P572R|PRG4_uc009wyl.2_Missense_Mutation_p.P520R|PRG4_uc009wym.2_Missense_Mutation_p.P479R|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	613	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|34.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCAACTACCCCCAAGGAGACT	0.662													40	18					0	0	0.000147903	0	0
PDC	5132	broad.mit.edu	37	1	186413523	186413523	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr1:186413523C>A	uc001gsa.2	-	4	402	c.329G>T	c.(328-330)AGA>ATA	p.R110I	PDC_uc001grz.2_Missense_Mutation_p.R58I	NM_002597	NP_002588	P20941	PHOS_HUMAN	phosducin isoform a	110					G-protein coupled receptor protein signaling pathway|phototransduction|visual perception	actin cytoskeleton|cytosol|nucleus|photoreceptor inner segment|photoreceptor outer segment	phospholipase inhibitor activity			skin(1)	1		Breast(1374;1.53e-05)		KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.0129)		AAACCCATATCTAGGCCCAAA	0.383													39	12					3.05275e-18	8.42021e-17	0.000125731	1	0
CDC123	8872	broad.mit.edu	37	10	12277080	12277081	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr10:12277080_12277081GG>TT	uc001ill.2	+	8	807_808	c.523_524GG>TT	c.(523-525)GGG>TTG	p.G175L	CDC123_uc001ilm.2_Missense_Mutation_p.G175L	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	175					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						ATTGATTCCTGGGGCTGAGTTT	0.332													16	756					0	0	6.4e-05	0	0
KCNMA1	3778	broad.mit.edu	37	10	78872169	78872169	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr10:78872169T>C	uc001jxn.2	-	7	1093	c.916A>G	c.(916-918)ATA>GTA	p.I306V	KCNMA1_uc001jxj.2_Missense_Mutation_p.I306V|KCNMA1_uc001jxk.1_5'UTR|KCNMA1_uc009xrt.1_Missense_Mutation_p.I126V|KCNMA1_uc001jxl.1_5'Flank|KCNMA1_uc001jxo.2_Missense_Mutation_p.I306V|KCNMA1_uc001jxm.2_Missense_Mutation_p.I306V|KCNMA1_uc001jxq.2_Missense_Mutation_p.I306V	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	306	Helical; Name=Segment S5; (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CTGATAAATATGGAGAGCAGA	0.522											OREG0020286	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	5					0	0	0.000151284	0	0
CRTAC1	55118	broad.mit.edu	37	10	99683047	99683047	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr10:99683047G>A	uc001kou.1	-	4	888	c.532C>T	c.(532-534)CGC>TGC	p.R178C	CRTAC1_uc001kov.2_Missense_Mutation_p.R167C|CRTAC1_uc001kot.1_Translation_Start_Site	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	178						proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		GCCACAGAGCGTCCGGCAAAG	0.592													7	54					0	0	0.000274275	0	0
LRRC32	2615	broad.mit.edu	37	11	76371968	76371968	+	Silent	SNP	T	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr11:76371968T>C	uc001oxq.3	-	3	912	c.669A>G	c.(667-669)CTA>CTG	p.L223L	LRRC32_uc001oxr.3_Silent_p.L223L|LRRC32_uc010rsf.1_Silent_p.L223L	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	223	LRR 8.|Extracellular (Potential).					integral to plasma membrane					0						AGCTCAGGTCTAGCACCCGCA	0.622													40	638					0	0	0.000319135	0	0
CAPN5	726	broad.mit.edu	37	11	76825351	76825351	+	Silent	SNP	G	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr11:76825351G>T	uc001oxx.2	+	5	755	c.570G>T	c.(568-570)ACG>ACT	p.T190T	CAPN5_uc009yup.2_Silent_p.T230T|CAPN5_uc009yuq.2_Silent_p.T226T|CAPN5_uc001oxy.2_Silent_p.T230T	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	190	Calpain catalytic.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						TGGACTTCACGGGTGGTGTTT	0.557											OREG0021255	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	925					0.000295444	0.00756697	0.000295444	1	0
NARS2	79731	broad.mit.edu	37	11	78176949	78176950	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr11:78176949_78176950CC>AA	uc001ozi.2	-	11	1512_1513	c.1136_1137GG>TT	c.(1135-1137)AGG>ATT	p.R379I	NARS2_uc010rsq.1_Missense_Mutation_p.R152I	NM_024678	NP_078954	Q96I59	SYNM_HUMAN	asparaginyl-tRNA synthetase 2, mitochondrial	379					asparaginyl-tRNA aminoacylation	mitochondrial matrix	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding			ovary(2)	2	all_cancers(14;2.63e-17)|all_epithelial(13;1.85e-19)				L-Asparagine(DB00174)	CTTCATTATCCCTCATGTAGAA	0.406													19	847					0	0	6.4e-05	0	0
KIAA1377	57562	broad.mit.edu	37	11	101849152	101849153	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr11:101849152_101849153CC>AA	uc001pgm.2	+	7	3190_3191	c.2920_2921CC>AA	c.(2920-2922)CCT>AAT	p.P974N	KIAA1377_uc001pgn.2_Missense_Mutation_p.P930N|KIAA1377_uc010run.1_Missense_Mutation_p.P775N	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	974							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AAGACAAAACCCTGGATCTGTA	0.332													20	859					0	0	6.4e-05	0	0
ZBTB16	7704	broad.mit.edu	37	11	113934445	113934445	+	Silent	SNP	G	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr11:113934445G>T	uc001pop.2	+	2	687	c.423G>T	c.(421-423)GGG>GGT	p.G141G	ZBTB16_uc001poo.1_Silent_p.G141G|ZBTB16_uc001poq.2_Silent_p.G141G	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	141					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		CCGATGGCGGGGCCGAGGAAG	0.582													52	879					3.76525e-18	1.02726e-16	0.000147903	1	0
ZBTB16	7704	broad.mit.edu	37	11	113934596	113934596	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr11:113934596G>A	uc001pop.2	+	2	838	c.574G>A	c.(574-576)GGT>AGT	p.G192S	ZBTB16_uc001poo.1_Missense_Mutation_p.G192S|ZBTB16_uc001poq.2_Missense_Mutation_p.G192S	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	192					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		CACTTCATTTGGTCTTTCAGC	0.582													51	885					0	0	0.000147903	0	0
NNMT	4837	broad.mit.edu	37	11	114182786	114182786	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr11:114182786G>T	uc001por.1	+	5	646	c.382G>T	c.(382-384)GAG>TAG	p.E128*	NNMT_uc001pos.1_Nonsense_Mutation_p.E128*	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	128					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	TCCAGAGAAGGAGGAGAAGTT	0.547													59	32					2.53126e-37	7.47467e-36	0.000147903	1	0
MLL	4297	broad.mit.edu	37	11	118376241	118376241	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr11:118376241A>G	uc001pta.2	+	27	9648	c.9625A>G	c.(9625-9627)ACC>GCC	p.T3209A	MLL_uc001ptb.2_Missense_Mutation_p.T3212A	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	3209					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AGACCTCAGTACCACAGTAGC	0.488			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								27	10					0	0	7.16444e-05	0	0
RASSF8	11228	broad.mit.edu	37	12	26217544	26217544	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr12:26217544G>A	uc001rgx.2	+	3	438	c.217G>A	c.(217-219)GTG>ATG	p.V73M	RASSF8_uc001rgy.2_Missense_Mutation_p.V73M|RASSF8_uc001rgz.2_Missense_Mutation_p.V73M|RASSF8_uc009zjd.1_Missense_Mutation_p.V73M|RASSF8_uc009zje.1_Missense_Mutation_p.V73M	NM_007211	NP_009142	Q8NHQ8	RASF8_HUMAN	Ras association (RalGDS/AF-6) domain family	73	Ras-associating.				signal transduction						0	Colorectal(261;0.0847)					TGCTAGTGATGTGCAGCTCAT	0.453													14	27					0	0	0.000422831	0	0
KRT6C	286887	broad.mit.edu	37	12	52865071	52865071	+	Missense_Mutation	SNP	G	T	T	rs143318086		TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr12:52865071G>T	uc001sal.3	-	5	970	c.922C>A	c.(922-924)CAG>AAG	p.Q308K		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	308	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		GTCTGCATCTGGGACAGCTCC	0.502													28	230					3.6622e-26	1.05657e-24	0.000109025	1	0
SHMT2	6472	broad.mit.edu	37	12	57626583	57626583	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr12:57626583G>A	uc001snf.1	+	7	824	c.814G>A	c.(814-816)GAC>AAC	p.D272N	SHMT2_uc001sng.1_Missense_Mutation_p.D168N|SHMT2_uc001snh.1_Missense_Mutation_p.D111N|SHMT2_uc009zpk.1_Missense_Mutation_p.D262N|SHMT2_uc001sni.1_Missense_Mutation_p.D251N|SHMT2_uc010srg.1_Missense_Mutation_p.D281N|SHMT2_uc001snj.1_Missense_Mutation_p.D176N|SHMT2_uc010srh.1_Missense_Mutation_p.D251N|SHMT2_uc001snk.1_Missense_Mutation_p.D176N|SHMT2_uc010sri.1_Missense_Mutation_p.D251N|SHMT2_uc001snl.2_Missense_Mutation_p.D176N|SHMT2_uc010srj.1_5'Flank	NM_005412	NP_005403	P34897	GLYM_HUMAN	serine hydroxymethyltransferase 2	272						microtubule cytoskeleton|mitochondrial nucleoid	glycine hydroxymethyltransferase activity|methyltransferase activity			ovary(1)|central_nervous_system(1)	2					Glycine(DB00145)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	CAAGCACGCGGACATCGTCAC	0.602													14	352					0	0	0.000308642	0	0
LRIG3	121227	broad.mit.edu	37	12	59268354	59268354	+	Silent	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr12:59268354C>T	uc001sqr.2	-	17	2943	c.2697G>A	c.(2695-2697)GGG>GGA	p.G899G	LRIG3_uc009zqh.2_Silent_p.G839G|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	899						integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			TATGGCAGGTCCCTTTGAAAC	0.403													85	151					0	0	0.000147903	0	0
PLXNC1	10154	broad.mit.edu	37	12	94637742	94637742	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr12:94637742A>T	uc001tdc.2	+	12	2578	c.2329A>T	c.(2329-2331)AGA>TGA	p.R777*		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	777	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						CATGATGGGCAGAAATTTTGA	0.328													12	3					0	0	0.000422831	0	0
PPTC7	160760	broad.mit.edu	37	12	110977692	110977692	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr12:110977692C>T	uc001trh.1	-	4	889	c.661G>A	c.(661-663)GCA>ACA	p.A221T		NM_139283	NP_644812	Q8NI37	PPTC7_HUMAN	T-cell activation protein phosphatase 2C	221	PP2C-like.						metal ion binding|phosphoprotein phosphatase activity				0						CCATCTGTTGCCGTCAGGATA	0.448													9	57					0	0	2.17888e-05	0	0
GPR109A	338442	broad.mit.edu	37	12	123187358	123187358	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr12:123187358A>T	uc001ucx.1	-	1	547	c.473T>A	c.(472-474)CTG>CAG	p.L158Q	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	158	Helical; Name=4; (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GTGGACTGTCAGGCCAATAGT	0.547													20	83					0	0	0.000229342	0	0
PSPC1	55269	broad.mit.edu	37	13	20279862	20279862	+	Silent	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr13:20279862G>A	uc001uml.2	-	8	1512	c.1326C>T	c.(1324-1326)GCC>GCT	p.A442A	PSPC1_uc001umj.1_Intron|PSPC1_uc001umk.1_Intron	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	442	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		CTGGTCCCATGGCAGGACCAG	0.463													5	19					0	0	8.12818e-05	0	0
HEATR4	399671	broad.mit.edu	37	14	73985814	73985814	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr14:73985814C>A	uc010tub.1	-	5	1445	c.1123G>T	c.(1123-1125)GAA>TAA	p.E375*	HEATR4_uc010tua.1_Nonsense_Mutation_p.E328*	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		TTTAGGTTTTCCAGGACAATC	0.453													21	45					1.55795e-14	4.11626e-13	0.000229342	1	0
ADAM6	8755	broad.mit.edu	37	14	107062360	107062360	+	RNA	SNP	A	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr14:107062360A>G	uc010tyt.1	-	131		c.6235T>C								Parts of antibodies, mostly variable regions.												0						GACAGCGCAGATGAGGGACAG	0.612													5	42					0	0	0.000157383	0	0
ADAM6	8755	broad.mit.edu	37	14	107062402	107062402	+	RNA	SNP	G	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr14:107062402G>C	uc010tyt.1	-	131		c.6193C>G								Parts of antibodies, mostly variable regions.												0						TCCTGGGCCCGACTCCTGCAG	0.597													6	43					0	0	2.17888e-05	0	0
ITGAM	3684	broad.mit.edu	37	16	31284753	31284753	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr16:31284753G>A	uc002ebq.2	+	8	870	c.772G>A	c.(772-774)GAT>AAT	p.D258N	ITGAM_uc002ebr.2_Missense_Mutation_p.D258N|ITGAM_uc010cam.1_5'Flank	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	258	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TGTCATCACGGATGGAGAAAA	0.498													14	28					0	0	0.000219431	0	0
GP1BA	2811	broad.mit.edu	37	17	4837673	4837674	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:4837673_4837674CG>AT	uc010vsq.1	+	3	1810_1811	c.1735_1736CG>AT	c.(1735-1737)CGG>ATG	p.R579M	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	592											0						GACAGTGCCCCGGGCCTGGCTG	0.629											OREG0024109	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	323					0	0	6.4e-05	0	0
DNAH9	1770	broad.mit.edu	37	17	11572800	11572800	+	Silent	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:11572800G>A	uc002gne.2	+	17	3110	c.3042G>A	c.(3040-3042)TCG>TCA	p.S1014S	DNAH9_uc010coo.2_Silent_p.S308S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1014	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCCAGTATTCGTACCTCTATG	0.522													6	46					0	0	0.000157383	0	0
NCOR1	9611	broad.mit.edu	37	17	15974803	15974803	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:15974803C>G	uc002gpo.2	-	30	4312	c.4072G>C	c.(4072-4074)GAT>CAT	p.D1358H	NCOR1_uc002gpn.2_Missense_Mutation_p.D1374H|NCOR1_uc002gpp.1_Missense_Mutation_p.D1265H|NCOR1_uc010vwb.1_Intron|NCOR1_uc010coy.2_Missense_Mutation_p.D266H|NCOR1_uc010vwc.1_Missense_Mutation_p.D169H	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1358	Interaction with ETO.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GTTAAAATATCTTGCCTTGGA	0.443													18	77					0	0	5.01169e-05	0	0
NCOR1	9611	broad.mit.edu	37	17	16052809	16052809	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:16052809G>A	uc002gpo.2	-	9	1105	c.865C>T	c.(865-867)CTC>TTC	p.L289F	NCOR1_uc002gpn.2_Missense_Mutation_p.L289F|NCOR1_uc002gpp.1_Missense_Mutation_p.L180F|NCOR1_uc002gpr.2_Missense_Mutation_p.L180F|NCOR1_uc002gps.1_Missense_Mutation_p.L298F|NCOR1_uc010coz.1_Missense_Mutation_p.L105F|NCOR1_uc010cpb.1_Missense_Mutation_p.L298F|NCOR1_uc010cpa.1_Missense_Mutation_p.L289F	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	289	Interaction with SIN3A/B.|Interaction with ZBTB33 and HEXIM1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		AATAAAATGAGTTTTTTCCTC	0.313													27	114					0	0	0.000184323	0	0
SYNRG	11276	broad.mit.edu	37	17	35879075	35879075	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:35879075G>C	uc002hoa.2	-	22	3996	c.3913C>G	c.(3913-3915)CCT>GCT	p.P1305A	SYNRG_uc010wde.1_Missense_Mutation_p.P1250A|SYNRG_uc010wdf.1_Missense_Mutation_p.P1227A|SYNRG_uc002hoc.2_Missense_Mutation_p.P1226A|SYNRG_uc002hoe.2_Missense_Mutation_p.P1215A|SYNRG_uc002hod.2_Missense_Mutation_p.P1170A|SYNRG_uc010wdg.1_Missense_Mutation_p.P1099A|SYNRG_uc002hob.2_Missense_Mutation_p.P1293A	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	1305					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						AGGCCAGGAGGCTTTGGTTCG	0.517													5	199					0	0	1.23904e-05	0	0
LOC284100	284100	broad.mit.edu	37	17	36214769	36214769	+	Splice_Site	SNP	C	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:36214769C>G	uc002hom.1	-	2		c.189_splice	c.e2+1		LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						CTTGGACTTGCCAGTGGTAGC	0.363													2	7					0	0	6.4e-05	0	0
JUP	3728	broad.mit.edu	37	17	39913672	39913672	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:39913672C>T	uc002hxq.2	-	12	2318	c.2041G>A	c.(2041-2043)GAG>AAG	p.E681K	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Missense_Mutation_p.E681K|JUP_uc002hxs.2_Missense_Mutation_p.E681K	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	681					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		CTCACAGCCTCCCAGGCAGCC	0.403													32	91					0	0	0.000270559	0	0
HDAC5	10014	broad.mit.edu	37	17	42161941	42161941	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:42161941C>G	uc002ifd.1	-	16	2498	c.2287G>C	c.(2287-2289)GAC>CAC	p.D763H	HDAC5_uc002ife.1_Missense_Mutation_p.D763H|HDAC5_uc002iff.1_Missense_Mutation_p.D764H|HDAC5_uc010czp.1_Intron|HDAC5_uc002ifg.1_Missense_Mutation_p.D73H|HDAC5_uc002ifh.2_Missense_Mutation_p.D763H	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	763	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		TTCTTGCTGTCTAGCTTCTGC	0.592											OREG0024450	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	63					0	0	0.000175454	0	0
ACBD4	79777	broad.mit.edu	37	17	43215194	43215194	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:43215194G>C	uc002iid.2	+	7	914	c.570G>C	c.(568-570)GAG>GAC	p.E190D	ACBD4_uc010wjj.1_Missense_Mutation_p.S203T|ACBD4_uc002iie.2_Missense_Mutation_p.S203T|ACBD4_uc002iif.2_Missense_Mutation_p.E190D|ACBD4_uc002iic.2_Missense_Mutation_p.E190D|ACBD4_uc010dae.2_Missense_Mutation_p.S125T	NM_001135707	NP_001129179	Q8NC06	ACBD4_HUMAN	acyl-Coenzyme A binding domain containing 4	190							fatty-acyl-CoA binding			ovary(1)|kidney(1)	2						TGGAGCCTGAGCTGGTGAGCC	0.597													28	173					0	0	0.000279167	0	0
LOC651250	651250	broad.mit.edu	37	17	66130838	66130838	+	RNA	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:66130838G>A	uc002jgq.2	+	6		c.9961G>A			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						CTGGTCTAGGGGCGGCATGCT	0.577													5	11					0	0	1.23904e-05	0	0
SLC25A10	1468	broad.mit.edu	37	17	79687107	79687107	+	Nonstop_Mutation	SNP	A	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:79687107A>C	uc002kbi.2	+	11	950	c.864A>C	c.(862-864)TGA>TGC	p.*288C	SLC25A10_uc010wut.1_Nonstop_Mutation_p.*443C|SLC25A10_uc010dif.2_Nonstop_Mutation_p.*297C|SLC25A10_uc010wuu.1_Nonstop_Mutation_p.*242C	NM_012140	NP_036272	Q9UBX3	DIC_HUMAN	solute carrier family 25 (mitochondrial carrier;	288					gluconeogenesis|mitochondrial transport	integral to membrane|mitochondrial inner membrane|nucleus	protein binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0117)|OV - Ovarian serous cystadenocarcinoma(97;0.0955)		Succinic acid(DB00139)	TGCCATCCTGACCAGCCGTGG	0.607													14	64					0	0	7.16444e-05	0	0
ZFR2	23217	broad.mit.edu	37	19	3821378	3821378	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr19:3821378C>T	uc002lyw.2	-	10	1603	c.1591G>A	c.(1591-1593)GAG>AAG	p.E531K	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	531	Potential.					intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		TCCAGCCGCTCCTCCGCCAGG	0.697													7	10					0	0	8.12818e-05	0	0
CD70	970	broad.mit.edu	37	19	6586403	6586403	+	Silent	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr19:6586403G>A	uc002mfi.2	-	3	360	c.210C>T	c.(208-210)GAC>GAT	p.D70D	CD70_uc010xjf.1_Silent_p.D70D	NM_001252	NP_001243	P32970	CD70_HUMAN	tumor necrosis factor ligand superfamily, member	70	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to membrane of membrane fraction|integral to plasma membrane	cytokine activity|protease binding|tumor necrosis factor receptor binding				0						ATAGCCTGGGGTCCTGCTGAG	0.547													8	14					0	0	0.000157383	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8662006	8662006	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr19:8662006T>C	uc002mkj.1	-	8	1179	c.905A>G	c.(904-906)GAG>GGG	p.E302G	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	302	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GTGGGTGATCTCCAGAGTGGG	0.592													28	79					0	0	0.000339439	0	0
DNM2	1785	broad.mit.edu	37	19	10939755	10939755	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr19:10939755C>T	uc002mps.1	+	19	2266	c.2102C>T	c.(2101-2103)TCC>TTC	p.S701F	DNM2_uc010dxk.2_Intron|DNM2_uc002mpt.1_Missense_Mutation_p.S701F|DNM2_uc002mpv.1_Missense_Mutation_p.S697F|DNM2_uc002mpu.1_Missense_Mutation_p.S697F|DNM2_uc010dxl.1_Missense_Mutation_p.S701F|DNM2_uc002mpw.2_Missense_Mutation_p.S430F|DNM2_uc002mpx.1_Missense_Mutation_p.S57F	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	701	GED.				G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			TACCTATACTCCTCGGCAGAC	0.632													6	27					0	0	8.12818e-05	0	0
SLC17A7	57030	broad.mit.edu	37	19	49933928	49933928	+	Missense_Mutation	SNP	C	T	T	rs145455204		TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr19:49933928C>T	uc002pnp.2	-	12	1703	c.1531G>A	c.(1531-1533)GTT>ATT	p.V511I	SLC17A7_uc002pno.2_Missense_Mutation_p.V173I	NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	511	Cytoplasmic (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		TCATGGCCAACGAAGCCACAC	0.632													44	13					0	0	0.000125731	0	0
GALNT14	79623	broad.mit.edu	37	2	31155012	31155012	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr2:31155012G>T	uc002rnr.2	-	10	1599	c.980C>A	c.(979-981)CCC>CAC	p.P327H	GALNT14_uc002rnq.2_Missense_Mutation_p.P307H|GALNT14_uc002rns.2_Missense_Mutation_p.P332H|GALNT14_uc010ymr.1_Missense_Mutation_p.P292H|GALNT14_uc010ezo.1_Missense_Mutation_p.P294H|GALNT14_uc010ezp.1_3'UTR	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	327	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TCGGCTGCAGGGGACGATCTC	0.567													24	35					7.92952e-12	2.07324e-10	7.16444e-05	1	0
TTN	7273	broad.mit.edu	37	2	179640610	179640610	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr2:179640610G>A	uc010zfg.1	-	28	6205	c.5981C>T	c.(5980-5982)TCG>TTG	p.S1994L	TTN_uc010zfh.1_Missense_Mutation_p.S1948L|TTN_uc010zfi.1_Missense_Mutation_p.S1948L|TTN_uc010zfj.1_Missense_Mutation_p.S1948L|TTN_uc002unb.2_Missense_Mutation_p.S1994L|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1994							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCTCTTCCGACTCTTCAGG	0.438													7	9					0	0	0.000157383	0	0
KIAA0406	9675	broad.mit.edu	37	20	36634691	36634691	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr20:36634691G>T	uc002xhl.2	-	4	2620	c.2411C>A	c.(2410-2412)ACC>AAC	p.T804N	KIAA0406_uc002xhm.2_Missense_Mutation_p.T804N	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	804							binding				0		Myeloproliferative disorder(115;0.00874)				TTCAGCTGTGGTGGTGCTCTT	0.448													36	162					9.8876e-21	2.82021e-19	0.000159656	1	0
CASS4	57091	broad.mit.edu	37	20	55033678	55033678	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr20:55033678G>T	uc002xxp.2	+	7	2461	c.2236G>T	c.(2236-2238)GAC>TAC	p.D746Y	CASS4_uc002xxr.2_Missense_Mutation_p.D746Y|CASS4_uc010zze.1_Missense_Mutation_p.D692Y|CASS4_uc010gio.2_Missense_Mutation_p.D309Y	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	746					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CCTGCTCAAGGACGTAGCGCT	0.652													12	21					2.27111e-07	5.87679e-06	0.00010058	1	0
BAGE2	85319	broad.mit.edu	37	21	11049596	11049596	+	Missense_Mutation	SNP	C	T	T	rs28571918		TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr21:11049596C>T	uc002yit.1	-	4	513	c.305G>A	c.(304-306)TGT>TAT	p.C102Y		NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GGCTGTCGCACACTGCACAGT	0.373													40	45					0	0	0.000147903	0	0
BAGE2	85319	broad.mit.edu	37	21	11049621	11049621	+	Nonsense_Mutation	SNP	G	A	A	rs28441174		TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr21:11049621G>A	uc002yit.1	-	4	488	c.280C>T	c.(280-282)CGA>TGA	p.R94*		NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATCTTCCTTCGCTATAATTAA	0.368													34	45					0	0	0.000106405	0	0
BAGE2	85319	broad.mit.edu	37	21	11049623	11049623	+	Splice_Site	SNP	T	C	C	rs28537865		TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr21:11049623T>C	uc002yit.1	-	4	488	c.280_splice	c.e4-1	p.R94_splice		NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTTCCTTCGCTATAATTAACA	0.368													35	44					0	0	0.000106405	0	0
IFNAR1	3454	broad.mit.edu	37	21	34725150	34725150	+	Silent	SNP	C	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr21:34725150C>G	uc002yrn.2	+	9	1377	c.1230C>G	c.(1228-1230)ACC>ACG	p.T410T	IFNAR1_uc011adv.1_Silent_p.T341T	NM_000629	NP_000620	P17181	INAR1_HUMAN	interferon-alpha receptor 1 precursor	410	Fibronectin type-III 3.|Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	integral to plasma membrane	type I interferon receptor activity			central_nervous_system(1)|skin(1)	2					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	GAGCACACACCATGGATGAAA	0.323													3	67					0	0	6.4e-05	0	0
SON	6651	broad.mit.edu	37	21	34923346	34923346	+	Silent	SNP	T	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr21:34923346T>C	uc002yse.1	+	3	1858	c.1809T>C	c.(1807-1809)GCT>GCC	p.A603A	SON_uc002ysb.1_Silent_p.A603A|SON_uc002ysc.2_Silent_p.A603A|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	603					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						TCATGGCAGCTGGGGCACTGG	0.657													29	58					0	0	8.91981e-05	0	0
DSCAM	1826	broad.mit.edu	37	21	41450683	41450683	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr21:41450683T>A	uc002yyq.1	-	26	5094	c.4642A>T	c.(4642-4644)ATG>TTG	p.M1548L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1548	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CACACCCGCATCTGCAGCTCA	0.582													12	27					0	0	0.000151284	0	0
PES1	23481	broad.mit.edu	37	22	30984115	30984115	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr22:30984115T>C	uc003aij.1	-	3	225	c.151A>G	c.(151-153)AAG>GAG	p.K51E	PES1_uc003aik.1_Missense_Mutation_p.K51E|PES1_uc003ail.1_Missense_Mutation_p.K51E|PES1_uc003aim.1_Missense_Mutation_p.K51E|PES1_uc003ain.1_5'UTR|PES1_uc003aio.1_5'UTR	NM_014303	NP_055118	O00541	PESC_HUMAN	pescadillo homolog 1, containing BRCT domain	51	Sufficient for nucleolar localization.|Required for 28S ribosomal RNA processing.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	chromosome|nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						ACCTTCTTCTTGTGTTTGGGT	0.478													42	62					0	0	0.000147903	0	0
NFAM1	150372	broad.mit.edu	37	22	42805442	42805442	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr22:42805442T>A	uc003bcn.3	-	3	601	c.563A>T	c.(562-564)AAG>ATG	p.K188M		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	188	Cytoplasmic (Potential).				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						ATCCCGTACCTTGTTCCAGAG	0.667													7	125					0	0	0.000274275	0	0
MUC4	4585	broad.mit.edu	37	3	195515747	195515747	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr3:195515747C>T	uc011bto.1	-	2	3164	c.2704G>A	c.(2704-2706)GCC>ACC	p.A902T	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.A784T	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	907	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GAAATGGCGGCTGTCTCCTGA	0.607													11	20					0	0	6.40141e-05	0	0
BRD9	65980	broad.mit.edu	37	5	881269	881270	+	Missense_Mutation	DNP	CC	AA	AA	rs140948018		TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr5:881269_881270CC>AA	uc003jbq.2	-	9	1161_1162	c.994_995GG>TT	c.(994-996)GGG>TTG	p.G332L	BRD9_uc003jbl.2_Missense_Mutation_p.G216L|BRD9_uc003jbm.2_RNA|BRD9_uc003jbn.2_RNA|BRD9_uc011cmb.1_Missense_Mutation_p.G279L|BRD9_uc003jbo.2_Missense_Mutation_p.G236L|BRD9_uc003jbp.2_Intron|BRD9_uc011cmc.1_Intron	NM_023924	NP_076413	Q9H8M2	BRD9_HUMAN	bromodomain containing 9 isoform 1	332							nucleic acid binding				0			Epithelial(17;0.00202)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00815)|Lung(60;0.185)			GAGCAGGCTCCCGTCCCCGTTC	0.599													9	229					0	0	6.4e-05	0	0
SLC22A4	6583	broad.mit.edu	37	5	131630375	131630375	+	Silent	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr5:131630375C>T	uc003kwq.2	+	1	231	c.66C>T	c.(64-66)TTC>TTT	p.F22F	uc003kwm.3_Intron|SLC22A4_uc010jdq.1_5'Flank	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	22	Helical; Name=1; (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	GCCTCATCTTCTTCCTGCTCA	0.637													5	74					0	0	8.12818e-05	0	0
FAM136B	387071	broad.mit.edu	37	6	3045944	3045944	+	Silent	SNP	T	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr6:3045944T>C	uc011dhr.1	+	1	327	c.327T>C	c.(325-327)GGT>GGC	p.G109G		NM_001012983	NP_001013001			hypothetical protein LOC387071												0	Ovarian(93;0.0386)	all_hematologic(90;0.108)				AGCTGGACGGTTGTGTGACCA	0.483													12	100					0	0	0.000219431	0	0
C6orf27	80737	broad.mit.edu	37	6	31741199	31741200	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr6:31741199_31741200CC>AA	uc011dog.1	-	6	974_975	c.736_737GG>TT	c.(736-738)GGG>TTG	p.G246L	C6orf27_uc003nxd.2_Intron|C6orf27_uc011doh.1_Intron	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	246						extracellular region				ovary(3)	3						AAAATGGCCCCCGTGGCTACAT	0.594													15	414					0	0	6.4e-05	0	0
NOTCH4	4855	broad.mit.edu	37	6	32166871	32166872	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr6:32166871_32166872CC>AA	uc003obb.2	-	24	4505_4506	c.4366_4367GG>TT	c.(4366-4368)GGG>TTG	p.G1456L	NOTCH4_uc011dpt.1_5'Flank|NOTCH4_uc003oba.2_Missense_Mutation_p.G119L|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc011dpw.1_5'Flank	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1456	Helical; (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GAGAATCACCCCGGCCACTGGG	0.455													10	199					0	0	6.4e-05	0	0
MAP3K4	4216	broad.mit.edu	37	6	161513084	161513084	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr6:161513084C>T	uc003qtn.2	+	13	3320	c.3178C>T	c.(3178-3180)CAG>TAG	p.Q1060*	MAP3K4_uc010kkc.1_Nonsense_Mutation_p.Q1060*|MAP3K4_uc003qto.2_Nonsense_Mutation_p.Q1060*|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Nonsense_Mutation_p.Q513*|MAP3K4_uc003qtp.2_Nonsense_Mutation_p.Q50*	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1060					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		GGAGTTTAGACAGAAGATAGG	0.358													72	49					0	0	0.000147903	0	0
NPTX2	4885	broad.mit.edu	37	7	98256538	98256538	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr7:98256538C>T	uc003upl.2	+	4	1127	c.950C>T	c.(949-951)ACG>ATG	p.T317M		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	317	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			GTCACCTGGACGACACGGGAT	0.642													10	63					0	0	6.40141e-05	0	0
DPY19L2P2	349152	broad.mit.edu	37	7	102825947	102825947	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr7:102825947A>G	uc003vbh.3	-	20	3239	c.1048T>C	c.(1048-1050)TGT>CGT	p.C350R	DPY19L2P2_uc003vbg.3_RNA|DPY19L2P2_uc010lit.2_RNA	NR_003561				RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						ACAGCTTGACACTTGCCATTG	0.373													10	33					0	0	0.00010058	0	0
MET	4233	broad.mit.edu	37	7	116339558	116339558	+	Silent	SNP	C	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr7:116339558C>G	uc003vij.2	+	2	607	c.420C>G	c.(418-420)ACC>ACG	p.T140T	MET_uc010lkh.2_Silent_p.T140T|MET_uc011knc.1_Silent_p.T140T|MET_uc011knd.1_Silent_p.T140T|MET_uc011kne.1_Silent_p.T140T|MET_uc011knf.1_Silent_p.T140T|MET_uc011kng.1_Silent_p.T140T|MET_uc011knh.1_Silent_p.T140T|MET_uc011kni.1_Silent_p.T140T|MET_uc003vii.1_Silent_p.T159T|MET_uc010lkg.2_Silent_p.T140T|MET_uc011kmz.1_Silent_p.T140T|MET_uc011kna.1_Silent_p.T140T|MET_uc011knb.1_Silent_p.T140T	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	140	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			ACAGAGGGACCTGCCAGCGAC	0.488			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				19	34					0	0	9.7654e-05	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672894	141672894	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr7:141672894T>C	uc003vwx.1	-	1	680	c.596A>G	c.(595-597)TAT>TGT	p.Y199C		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	199	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					AGACCACAGATAGCAGAAGAG	0.423													11	14					0	0	6.40141e-05	0	0
PREX2	80243	broad.mit.edu	37	8	68989669	68989669	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr8:68989669G>C	uc003xxv.1	+	15	1634	c.1607G>C	c.(1606-1608)GGC>GCC	p.G536A	PREX2_uc003xxu.1_Missense_Mutation_p.G536A|PREX2_uc011lez.1_Missense_Mutation_p.G471A	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	536	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATGATATTTGGCGTTGGACTC	0.443													3	35					0	0	6.4e-05	0	0
ODF1	4956	broad.mit.edu	37	8	103572783	103572783	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr8:103572783C>T	uc003ykt.2	+	2	532	c.424C>T	c.(424-426)CGA>TGA	p.R142*		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	142					cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			AGTCAAAGTTCGAGTGAAGGA	0.448													22	34					0	0	0.000375601	0	0
KIAA1045	23349	broad.mit.edu	37	9	34977182	34977182	+	Silent	SNP	C	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr9:34977182C>A	uc003zvq.2	+	6	1130	c.952C>A	c.(952-954)CGG>AGG	p.R318R	KIAA1045_uc003zvr.2_Silent_p.R318R	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	318							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			AGAGTGCCGCCGGGCCCAGCA	0.637													24	47					2.41591e-17	6.52036e-16	9.22233e-05	1	0
VPS13A	23230	broad.mit.edu	37	9	79898509	79898509	+	Silent	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr9:79898509C>T	uc004akr.2	+	31	3542	c.3282C>T	c.(3280-3282)AAC>AAT	p.N1094N	VPS13A_uc004akp.3_Silent_p.N1094N|VPS13A_uc004akq.3_Silent_p.N1094N|VPS13A_uc004aks.2_Silent_p.N1055N	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1094					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						CTGAAATAAACGCAAAGCTAA	0.284													5	5					0	0	1.23904e-05	0	0
TBC1D2	55357	broad.mit.edu	37	9	100975492	100975492	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr9:100975492C>G	uc011lvb.1	-	7	1563	c.1383G>C	c.(1381-1383)ATG>ATC	p.M461I	TBC1D2_uc004ayp.2_Missense_Mutation_p.M1I|TBC1D2_uc004ayq.2_Missense_Mutation_p.M461I|TBC1D2_uc004ayr.2_Missense_Mutation_p.M243I|TBC1D2_uc004ayo.3_Missense_Mutation_p.M461I	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	461						cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		GGTAAGCTTCCATGTCATCCT	0.502													3	65					0	0	1.23904e-05	0	0
CD99	4267	broad.mit.edu	37	X	2640667	2640667	+	Splice_Site	SNP	G	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chrX:2640667G>T	uc004cqm.2	+	6	437	c.263_splice	c.e6-1	p.G88_splice	CD99_uc010nda.2_Splice_Site_p.G72_splice|CD99_uc004cqn.2_Splice_Site|CD99_uc004cqo.2_Splice_Site_p.G88_splice	NM_002414	NP_002405	P14209	CD99_HUMAN	CD99 antigen isoform a precursor						cell adhesion	cytoplasm|integral to plasma membrane				skin(1)	1						TTCTTTCCTAGGTAGCTTTTC	0.403													31	139					1.36161e-19	3.84006e-18	0.000132358	1	0
MAP7D2	256714	broad.mit.edu	37	X	20134870	20134870	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chrX:20134870T>G	uc004czr.1	-	1	147	c.128A>C	c.(127-129)CAA>CCA	p.Q43P	MAP7D2_uc011mji.1_5'Flank|MAP7D2_uc010nfo.1_Missense_Mutation_p.Q43P|MAP7D2_uc011mjj.1_Missense_Mutation_p.Q43P	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	43										ovary(2)|breast(1)	3						GATAATACCTTGAGGCCGGTA	0.602													13	35					0	0	5.01169e-05	0	0
RLIM	51132	broad.mit.edu	37	X	73811749	73811749	+	Silent	SNP	G	C	C			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chrX:73811749G>C	uc004ebu.2	-	5	1691	c.1401C>G	c.(1399-1401)TCC>TCG	p.S467S	RLIM_uc004ebw.2_Silent_p.S467S	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	467	Ser-rich.|Poly-Ser.				random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						aactggaactggaactcgaac	0.269													3	20					0	0	6.4e-05	0	0
GLRA4	441509	broad.mit.edu	37	X	102968473	102968473	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chrX:102968473C>T	uc011mse.1	-	8	1479	c.1058G>A	c.(1057-1059)CGA>CAA	p.R353Q	TMEM31_uc004elh.2_Intron	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	353	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						CTGCCTTCTTCGAAGTCGTAT	0.517													35	32					0	0	0.000159656	0	0
POLE	5426	broad.mit.edu	37	12	133220099	133220100	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr12:133220099_133220100delCA	uc001uks.1	-	34	4381_4382	c.4337_4338delTG	c.(4336-4338)GTGfs	p.V1446fs	POLE_uc001ukq.1_5'Flank|POLE_uc001ukr.1_Frame_Shift_Del_p.V250fs|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Frame_Shift_Del_p.V1419fs	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1446					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GTTTATTGACCACACACACACA	0.604								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					10	427	---	---	---	---					
SPRED1	161742	broad.mit.edu	37	15	38643678	38643679	+	Frame_Shift_Ins	INS	-	A	A			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr15:38643678_38643679insA	uc001zka.3	+	7	1483_1484	c.1148_1149insA	c.(1147-1149)TCAfs	p.S383fs		NM_152594	NP_689807	Q7Z699	SPRE1_HUMAN	sprouty-related protein 1 with EVH-1 domain	383	SPR.				inactivation of MAPK activity|multicellular organismal development	caveola|nucleus	stem cell factor receptor binding			ovary(2)|lung(2)|skin(1)	5		all_cancers(109;4.88e-13)|all_epithelial(112;1.83e-11)|Lung NSC(122;2.21e-09)|all_lung(180;4.64e-08)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(113;2.41e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		ATGTCAGACTCAGAGGGAGATT	0.436									Legius_syndrome				13	1	---	---	---	---					
PIGB	9488	broad.mit.edu	37	15	55631503	55631503	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr15:55631503delT	uc002act.2	+	7	1149	c.833delT	c.(832-834)ATTfs	p.I278fs	PIGB_uc010ugg.1_Frame_Shift_Del_p.I83fs	NM_004855	NP_004846	Q92521	PIGB_HUMAN	phosphatidylinositol glycan, class B	278					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	integral to membrane|intrinsic to endoplasmic reticulum membrane	glycolipid mannosyltransferase activity				0				all cancers(107;0.0255)		ATTGATCGTATTTTTTTTGGC	0.284													3	6	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45247389	45247389	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr17:45247389delT	uc002ild.3	-	4	398	c.271delA	c.(271-273)ATCfs	p.I91fs	CDC27_uc002ile.3_Frame_Shift_Del_p.I91fs|CDC27_uc002ilf.3_Frame_Shift_Del_p.I91fs|CDC27_uc010wkp.1_Frame_Shift_Del_p.I30fs|CDC27_uc010wkq.1_RNA	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	91	TPR 1.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						CCAGATAAGATTTGTTCCCCT	0.323													13	221	---	---	---	---					
KBTBD12	166348	broad.mit.edu	37	3	127682078	127682078	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr3:127682078delC	uc010hsr.2	+	4	1542	c.1539delC	c.(1537-1539)TGCfs	p.C513fs	KBTBD12_uc003ejy.3_Frame_Shift_Del_p.C120fs|KBTBD12_uc010hsq.2_RNA|KBTBD12_uc003eka.3_Frame_Shift_Del_p.C88fs	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	513	Kelch 3.									ovary(1)	1						TTCGAAAATGCCTTGACGTGG	0.522													2	4	---	---	---	---					
NAALADL2	254827	broad.mit.edu	37	3	175473198	175473198	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GN-A26D-06A-11D-A19A-08	TCGA-GN-A26D-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	9fc0661b-2941-4418-99f2-8a1e8caa6201	61aaf08e-dfe6-4ccc-9a71-7626e3c8f6fa	g.chr3:175473198delT	uc003fit.2	+	13	2268	c.2181delT	c.(2179-2181)GGTfs	p.G727fs		NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	727	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		CACCACCAGGTTTTTATAGGT	0.393													2	4	---	---	---	---					
