Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM16	63976	broad.mit.edu	37	1	3342300	3342300	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr1:3342300A>G	uc001akf.2	+	13	3175	c.3095A>G	c.(3094-3096)CAC>CGC	p.H1032R	PRDM16_uc001akc.2_Missense_Mutation_p.H1031R|PRDM16_uc001akd.2_Missense_Mutation_p.H1031R|PRDM16_uc001ake.2_Missense_Mutation_p.H1032R|PRDM16_uc009vlh.2_Missense_Mutation_p.H732R	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1032	Mediates interaction with SKI and regulation of TGF-beta signaling.|C2H2-type 10.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		AAGCACGAGCACGAGAACGCA	0.667000			T	EVI1	MDS|AML								22	83					0	0	0.001882	0	0
TAS1R1	80835	broad.mit.edu	37	1	6639491	6639491	+	Silent	SNP	C	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr1:6639491C>T	uc001ant.2	+	6	2373	c.2373C>T	c.(2371-2373)GCC>GCT	p.A791A	TAS1R1_uc001anu.2_Silent_p.A537A|TAS1R1_uc001anv.2_Missense_Mutation_p.P323L|TAS1R1_uc001anw.2_3'UTR|ZBTB48_uc009vmc.1_5'Flank|ZBTB48_uc001anx.2_5'Flank|ZBTB48_uc009vmd.1_5'Flank	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	791	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		TGCCTGCGGCCAACATGATGG	0.587000													39	58					0	0	0.006999	0	0
PAPPA2	60676	broad.mit.edu	37	1	176809321	176809321	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr1:176809321G>A	uc001gkz.2	+	22	6379	c.5215G>A	c.(5215-5217)GAT>AAT	p.D1739N	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1739				D -> N (in Ref. 4; CAC11134).	cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTTCCAAGCAGATGGTTGGTG	0.507000													68	171					0	0	0.003610	0	0
RYR2	6262	broad.mit.edu	37	1	237604652	237604652	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr1:237604652G>C	uc001hyl.1	+	13	1159	c.1039G>C	c.(1039-1041)GAT>CAT	p.D347H		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	347	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAAAGAAGTAGATGGCATGGG	0.388000													4	102					0	0	0.000602	0	0
PAPSS2	9060	broad.mit.edu	37	10	89501012	89501012	+	Silent	SNP	C	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr10:89501012C>T	uc001kex.2	+	9	1355	c.1092C>T	c.(1090-1092)GAC>GAT	p.D364D	PAPSS2_uc001kew.2_Silent_p.D369D	NM_004670	NP_004661	O95340	PAPS2_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase 2	364	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|protein binding|sulfate adenylyltransferase (ATP) activity			central_nervous_system(1)|skin(1)	2		Melanoma(5;0.019)|Colorectal(252;0.123)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00164)|Colorectal(12;0.000323)|COAD - Colon adenocarcinoma(12;0.00124)		AAAGTGGGGACTGGCTGGTTG	0.403000													31	70					0	0	0.008361	0	0
ANO5	203859	broad.mit.edu	37	11	22294380	22294380	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr11:22294380C>A	uc001mqi.2	+	19	2397	c.2080C>A	c.(2080-2082)CCT>ACT	p.P694T	ANO5_uc001mqj.2_Missense_Mutation_p.P693T	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	694	Helical; (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TCCTTTGGCTCCTCTTCTTGC	0.378000													25	63					3.01185e-09	4.80268e-09	0.003954	1	0
RCOR2	283248	broad.mit.edu	37	11	63679913	63679913	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr11:63679913C>A	uc001nyc.2	-	11	1509	c.1121G>T	c.(1120-1122)CGG>CTG	p.R374L		NM_173587	NP_775858	Q8IZ40	RCOR2_HUMAN	REST corepressor 2	374	SANT 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)|skin(1)	2						GAAGCGGCGCCGGTAGCTCAC	0.587000													49	110					2.43139e-17	4.21918e-17	0.003610	1	0
RBM4B	83759	broad.mit.edu	37	11	66444485	66444485	+	Silent	SNP	G	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr11:66444485G>A	uc001oja.2	-	1	735	c.66C>T	c.(64-66)TTC>TTT	p.F22F	RBM4B_uc001ojb.2_Silent_p.F22F	NM_031492	NP_113680	Q9BQ04	RBM4B_HUMAN	RNA binding motif protein 4B	22	RRM 1.				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|RNA splicing	nucleolus	nucleotide binding|RNA binding|zinc ion binding				0						CATACTGCTCGAAGAGTGAGC	0.512000													41	112					0	0	0.003214	0	0
SLC36A4	120103	broad.mit.edu	37	11	92917687	92917687	+	Splice_Site	SNP	C	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr11:92917687C>A	uc001pdn.2	-	3	277	c.180_splice	c.e3-1	p.S60_splice	SLC36A4_uc001pdm.2_Splice_Site	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid						L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TTGTACAAATCTGAAAAGTAA	0.313000													44	79					8.20599e-20	1.46713e-19	0.002852	1	0
TEP1	7011	broad.mit.edu	37	14	20840924	20840924	+	Silent	SNP	T	C	C			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr14:20840924T>C	uc001vxe.2	-	49	7084	c.7044A>G	c.(7042-7044)AAA>AAG	p.K2348K	TEP1_uc010ahj.1_RNA|TEP1_uc010ahk.2_Silent_p.K1691K|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Silent_p.K2240K|TEP1_uc010tlh.1_Intron	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	2348	WD 17.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CCTTCCGCAGTTTCACTTGCC	0.507000													6	156					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	15	28948328	28948328	+	RNA	SNP	A	G	G			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr15:28948328A>G	uc001zcc.2	+	1		c.11A>G			uc001zcd.2_5'Flank					DQ578707																		CACAGGTGAAATGGTGTCTGA	0.557000													2	7					0	0	0.004672	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254000													4	15					0	0	0.001168	0	0
ITGAL	3683	broad.mit.edu	37	16	30490672	30490672	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr16:30490672G>A	uc002dyi.3	+	6	642	c.466G>A	c.(466-468)GAC>AAC	p.D156N	ITGAL_uc010veu.1_Intron|ITGAL_uc002dyj.3_Intron|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	156	VWFA.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GGGCAACGTAGACCTGGTATT	0.478000													38	52					0	0	0.006999	0	0
LPIN2	9663	broad.mit.edu	37	18	2951317	2951317	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr18:2951317G>T	uc002klo.2	-	4	565	c.326C>A	c.(325-327)CCT>CAT	p.P109H		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	109					fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		ATCTTCAGTAGGAATTGGTGA	0.418000													8	65					7.48243e-07	1.16175e-06	0.006214	1	0
MRPL54	116541	broad.mit.edu	37	19	3762750	3762750	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr19:3762750G>T	uc002lyq.3	+	1	86	c.52G>T	c.(52-54)GCC>TCC	p.A18S	APBA3_uc002lyp.1_5'Flank	NM_172251	NP_758455	Q6P161	RM54_HUMAN	mitochondrial ribosomal protein L54 precursor	18						mitochondrion|ribosome					0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00467)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGCTGGGGGGCCTGGGAGCT	0.617000													38	87					6.29468e-14	1.0611e-13	0.004878	1	0
SHD	56961	broad.mit.edu	37	19	4290585	4290585	+	Silent	SNP	C	T	T	rs111268424		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr19:4290585C>T	uc002lzw.2	+	6	2441	c.978C>T	c.(976-978)GCC>GCT	p.A326A	SHD_uc010dtu.2_Silent_p.A286A	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	326	SH2.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCAGGGTGCCGAGCATCTGG	0.657000													37	57					0	0	0.006230	0	0
GREB1	9687	broad.mit.edu	37	2	11716612	11716612	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr2:11716612T>A	uc002rbk.1	+	5	888	c.588T>A	c.(586-588)AAT>AAA	p.N196K	GREB1_uc002rbl.2_Missense_Mutation_p.N196K|GREB1_uc002rbm.2_Missense_Mutation_p.N86K|GREB1_uc002rbn.1_Missense_Mutation_p.N196K	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	196						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		TGGTCCGTAATGCACAAGGGA	0.478000													6	161					0	0	0.001984	0	0
TP53RK	112858	broad.mit.edu	37	20	45315804	45315804	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr20:45315804T>C	uc002xsk.2	-	2	573	c.350A>G	c.(349-351)GAA>GGA	p.E117G	SLC13A3_uc002xsg.1_5'Flank|SLC13A3_uc010gho.1_5'Flank|TP53RK_uc002xsj.2_Missense_Mutation_p.K119E	NM_033550	NP_291028	Q96S44	PRPK_HUMAN	p53-related protein kinase	117	Protein kinase.				lipopolysaccharide biosynthetic process	membrane|nucleus	ATP binding|p53 binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0		Myeloproliferative disorder(115;0.0122)				CACTGAGCCTTCAATTTCTTC	0.418000													98	222					0	0	0.003610	0	0
KDELR3	11015	broad.mit.edu	37	22	38877225	38877225	+	Nonsense_Mutation	SNP	G	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr22:38877225G>A	uc003avv.2	+	4	516	c.360G>A	c.(358-360)TGG>TGA	p.W120*	KDELR3_uc003avu.2_Nonsense_Mutation_p.W120*	NM_006855	NP_006846	O43731	ERD23_HUMAN	KDEL receptor 3 isoform a	120	Helical; (Potential).				protein retention in ER lumen|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|integral to membrane	ER retention sequence binding|receptor activity			ovary(2)	2	Melanoma(58;0.0286)					AGATCCTCTGGACTTTCTCTA	0.448000													66	157					0	0	0.003610	0	0
GRM2	2912	broad.mit.edu	37	3	51750001	51750001	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr3:51750001C>T	uc010hlv.2	+	4	2451	c.2212C>T	c.(2212-2214)CTC>TTC	p.L738F	GRM2_uc003dbo.3_Missense_Mutation_p.L120F|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	738	Helical; Name=5; (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CAATGTGCTCCTCATCGCGCT	0.577000													27	62					0	0	0.004656	0	0
KIAA2018	205717	broad.mit.edu	37	3	113376859	113376859	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr3:113376859C>A	uc003eam.2	-	7	4081	c.3670G>T	c.(3670-3672)GCA>TCA	p.A1224S	KIAA2018_uc003eal.2_Missense_Mutation_p.A1168S	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1224					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TGTAAAGATGCATTTGATGTT	0.418000													23	62					7.16444e-05	0.000108385	0.003954	1	0
MUC20	200958	broad.mit.edu	37	3	195456549	195456549	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr3:195456549T>C	uc010hzo.2	+	4	1613	c.1487T>C	c.(1486-1488)CTG>CCG	p.L496P	MUC20_uc010hzp.2_Missense_Mutation_p.L461P	NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	667	Interaction with MET.				protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		CTCCTGCGGCTGAGTGTGGCT	0.453000													6	10					0	0	0.001168	0	0
ADAD1	132612	broad.mit.edu	37	4	123305047	123305047	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr4:123305047C>G	uc003ieo.2	+	5	687	c.455C>G	c.(454-456)TCC>TGC	p.S152C	ADAD1_uc003iep.2_Missense_Mutation_p.S152C|ADAD1_uc003ieq.2_Missense_Mutation_p.S134C	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	152	DRBM.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						GAGTCTAGATCCAATGCAGCA	0.368000													29	75					0	0	0.005443	0	0
PGBD1	84547	broad.mit.edu	37	6	28269463	28269463	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr6:28269463C>T	uc003nky.2	+	7	2202	c.1832C>T	c.(1831-1833)GCT>GTT	p.A611V	PGBD1_uc003nkz.2_Missense_Mutation_p.A611V	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	611					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						ATGAACTTCGCTGATGTTCTT	0.408000													7	221					0	0	0.004482	0	0
SLC35D3	340146	broad.mit.edu	37	6	137245376	137245376	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr6:137245376G>A	uc003qhe.2	+	2	958	c.793G>A	c.(793-795)GCC>ACC	p.A265T		NM_001008783	NP_001008783	Q5M8T2	S35D3_HUMAN	solute carrier family 35, member D3	265	Helical; (Potential).				carbohydrate transport	integral to membrane				ovary(1)|central_nervous_system(1)	2	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000136)|OV - Ovarian serous cystadenocarcinoma(155;0.00365)		GAAGAGCATCGCCACCATCAC	0.592000													10	60					0	0	0.008291	0	0
IFNGR1	3459	broad.mit.edu	37	6	137519461	137519461	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr6:137519461C>A	uc003qho.2	-	7	1280	c.1177G>T	c.(1177-1179)GCT>TCT	p.A393S	IFNGR1_uc011edm.1_Missense_Mutation_p.A365S	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	393	Cytoplasmic (Potential).				regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	GAGTTTAAAGCGATGCTGCCA	0.443000													5	92					0.000602214	0.000866601	0.000602	1	0
RP9	6100	broad.mit.edu	37	7	33136131	33136131	+	Silent	SNP	G	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr7:33136131G>A	uc003tdm.2	-	5	459	c.441C>T	c.(439-441)GAC>GAT	p.D147D		NM_203288	NP_976033	Q8TA86	RP9_HUMAN	retinitis pigmentosa 9	147	PIM1-binding (By similarity).				RNA splicing	nucleus	nucleic acid binding|protein binding|zinc ion binding				0			GBM - Glioblastoma multiforme(11;0.0403)			GTCGTTTATTGTCTCGTATGA	0.368000													5	85					0	0	0.001168	0	0
LAMB1	3912	broad.mit.edu	37	7	107572810	107572810	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr7:107572810G>A	uc003vew.2	-	28	4536	c.4201C>T	c.(4201-4203)CCC>TCC	p.P1401S	LAMB1_uc003vev.2_Missense_Mutation_p.P1425S|LAMB1_uc003veu.2_5'Flank	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1401	Domain alpha.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCCCCTGGGGGTGTTCCACAG	0.592000													38	79					0	0	0.007835	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121653581	121653581	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr7:121653581G>T	uc003vjy.2	+	12	4876	c.4481G>T	c.(4480-4482)AGT>ATT	p.S1494I	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1494	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TCCTCAGACAGTCAAACTGGT	0.398000													22	54					1.66031e-10	2.72106e-10	0.003954	1	0
SCARA5	286133	broad.mit.edu	37	8	27737097	27737097	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr8:27737097C>T	uc003xgj.2	-	8	1780	c.1340G>A	c.(1339-1341)CGA>CAA	p.R447Q	SCARA5_uc010luz.2_Missense_Mutation_p.R222Q	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	447	SRCR.|Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		TTGCCCGAATCGAGCTGTGCG	0.527000													43	119					0	0	0.003214	0	0
RAD21	5885	broad.mit.edu	37	8	117862960	117862960	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr8:117862960G>A	uc003yod.2	-	12	1805	c.1517C>T	c.(1516-1518)CCA>CTA	p.P506L		NM_006265	NP_006256	O60216	RAD21_HUMAN	RAD21 homolog	506	Pro-rich.				apoptosis|cell division|chromosome segregation|double-strand break repair|mitotic metaphase/anaphase transition|mitotic prometaphase|protein localization to chromatin|reciprocal meiotic recombination|regulation of transcription from RNA polymerase II promoter	chromosome, centromeric region|cohesin complex|nuclear chromosome|nucleoplasm	protein binding			lung(1)|skin(1)	2	all_cancers(13;1.21e-21)|Lung NSC(37;0.000134)|Ovarian(258;0.0172)					AGGTTCTTCTGGGGGAAGCTC	0.323000													5	130					0	0	0.001984	0	0
CCIN	881	broad.mit.edu	37	9	36170395	36170395	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr9:36170395C>T	uc003zzb.3	+	1	1007	c.896C>T	c.(895-897)GCT>GTT	p.A299V		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	299	Kelch 1.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			GGAGTGTTTGCTTATATCATC	0.557000													7	104					0	0	0.003080	0	0
MAP7D3	79649	broad.mit.edu	37	X	135312676	135312676	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chrX:135312676A>G	uc004ezt.2	-	10	1709	c.1618T>C	c.(1618-1620)TAT>CAT	p.Y540H	MAP7D3_uc004ezs.2_Missense_Mutation_p.Y504H|MAP7D3_uc011mwc.1_Missense_Mutation_p.Y522H|MAP7D3_uc010nsa.1_Missense_Mutation_p.Y498H	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	540						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					ATTATTTTATAAGGAAAAGAA	0.363000													3	193					0	0	0.004672	0	0
DNAJA2	10294	broad.mit.edu	37	16	47005807	47005807	+	Splice_Site	DEL	C	-	-			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr16:47005807delC	uc002eeo.2	-	2	280	c.138_splice	c.e2+1	p.K46_splice	DNAJA2_uc002eep.2_Splice_Site	NM_005880	NP_005871	O60884	DNJA2_HUMAN	DnaJ subfamily A member 2						positive regulation of cell proliferation|protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			lung(1)	1		all_cancers(37;0.00125)|all_lung(18;0.00338)|all_epithelial(9;0.00358)|Lung NSC(13;0.0309)|Breast(268;0.116)				AAATAACTTACTTTGTCTCCT	0.343													47	110	---	---	---	---					
GRLF1	2909	broad.mit.edu	37	19	47422875	47422875	+	Frame_Shift_Del	DEL	C	-	-			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr19:47422875delC	uc010ekv.2	+	1	943	c.943delC	c.(943-945)CAGfs	p.Q315fs		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	315	FF 1.				axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		GGAAGGGACTCAGAAAGCCAA	0.507													13	34	---	---	---	---					
CADPS	8618	broad.mit.edu	37	3	62477094	62477096	+	In_Frame_Del	DEL	AAC	-	-			TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	g.chr3:62477094_62477096delAAC	uc003dll.2	-	21	3304_3306	c.2944_2946delGTT	c.(2944-2946)GTTdel	p.V982del	CADPS_uc003dlk.1_In_Frame_Del_p.V479del|CADPS_uc003dlm.2_In_Frame_Del_p.V992del|CADPS_uc003dln.2_In_Frame_Del_p.V952del	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	982	MHD1.|Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		CCACATATCTAACAACAAGTGGG	0.419													53	138	---	---	---	---					
