Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
UBE4B	10277	broad.mit.edu	37	1	10177626	10177626	+	Silent	SNP	C	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr1:10177626C>A	uc001aqs.3	+	8	2019	c.1306C>A	c.(1306-1308)CGA>AGA	p.R436R	UBE4B_uc001aqr.3_Silent_p.R307R|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_5'UTR	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	436					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		GTGTTTCGACCGAGTTGGAAT	0.393													3	41					0.000602214	0.000669127	0.014758	1	0
FRRS1	391059	broad.mit.edu	37	1	100214268	100214268	+	Silent	SNP	A	G	G			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr1:100214268A>G	uc001dsh.1	-	3	659	c.57T>C	c.(55-57)TAT>TAC	p.Y19Y		NM_001013660	NP_001013682	Q6ZNA5	FRRS1_HUMAN	stromal cell derived factor receptor 2 homolog	19	Reelin.|Helical; Name=1; (Potential).				electron transport chain|transport	integral to membrane	ferric-chelate reductase activity|metal ion binding			skin(1)	1		all_epithelial(167;2.09e-06)|all_lung(203;0.000435)|Lung NSC(277;0.00201)		Epithelial(280;0.0718)|all cancers(265;0.126)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.206)		AATTAGCCACATAACTAATGT	0.378													34	56					0	0	0.017118	0	0
ALX3	257	broad.mit.edu	37	1	110604111	110604111	+	Silent	SNP	G	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr1:110604111G>T	uc001dzb.2	-	3	757	c.669C>A	c.(667-669)CCC>CCA	p.P223P		NM_006492	NP_006483	O95076	ALX3_HUMAN	aristaless-like homeobox 3	223						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(81;2.35e-05)|all_epithelial(167;7.69e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.015)|all cancers(265;0.0706)|Epithelial(280;0.0758)|Colorectal(144;0.113)|LUSC - Lung squamous cell carcinoma(189;0.135)		CAGCCGTGAAGGGGTTCCGCC	0.622													27	49					3.1745e-13	3.7347e-13	0.008361	1	0
RIC8A	60626	broad.mit.edu	37	11	208890	208890	+	Silent	SNP	G	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr11:208890G>T	uc001log.2	+	1	361	c.36G>T	c.(34-36)ACG>ACT	p.T12T	BET1L_uc001loe.2_5'Flank|BET1L_uc001lod.2_5'Flank|RIC8A_uc001lof.2_Silent_p.T12T|RIC8A_uc001loh.2_5'Flank	NM_021932	NP_068751	Q9NPQ8	RIC8A_HUMAN	resistance to inhibitors of cholinesterase 8	12						cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity				0		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.45e-27)|Epithelial(43;2.94e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.86e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		CCGTGGAGACGGGTGAGGAGG	0.721													3	9					0.00024832	0.000281117	0.009096	1	0
ANO9	338440	broad.mit.edu	37	11	428825	428825	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr11:428825T>C	uc001lpi.2	-	12	1002	c.917A>G	c.(916-918)GAG>GGG	p.E306G	ANO9_uc001lph.2_5'UTR|ANO9_uc010qvv.1_Missense_Mutation_p.E162G	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	306	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						TGCCATTTCCTCCTGGGGAGA	0.602													10	10					0	0	0.006214	0	0
FBXO3	26273	broad.mit.edu	37	11	33770403	33770403	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr11:33770403G>T	uc001muz.2	-	9	996	c.968C>A	c.(967-969)GCC>GAC	p.A323D	FBXO3_uc010rej.1_Missense_Mutation_p.A10D|FBXO3_uc001muy.2_Missense_Mutation_p.A210D|FBXO3_uc009ykb.2_RNA|FBXO3_uc001mva.1_Missense_Mutation_p.A323D|FBXO3_uc001mvb.1_Missense_Mutation_p.A318D|FBXO3_uc010rek.1_RNA	NM_012175	NP_036307	Q9UK99	FBX3_HUMAN	F-box only protein 3 isoform 1	323	ApaG.				proteolysis	nucleus	ubiquitin-protein ligase activity			pancreas(1)	1		Lung NSC(402;0.0804)		BRCA - Breast invasive adenocarcinoma(625;0.00315)|Lung(977;0.00488)|LUSC - Lung squamous cell carcinoma(625;0.008)		CAACTGACAGGCCTTCTCAGG	0.428													6	57					0.00116845	0.00127467	0.001168	1	0
OR5B3	441608	broad.mit.edu	37	11	58170566	58170566	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr11:58170566G>A	uc010rkf.1	-	1	317	c.317C>T	c.(316-318)GCC>GTC	p.A106V		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TTCCACAGTGGCAAAAGCTAC	0.453													4	123					0	0	0.009096	0	0
MALAT1	378938	broad.mit.edu	37	11	65273039	65273039	+	RNA	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr11:65273039C>T	uc010roh.1	+	1		c.7807C>T			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						CATCGCCACCCCGTGCCTTTT	0.532													42	53					0	0	0.008740	0	0
Unknown	0	broad.mit.edu	37	12	31307356	31307356	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr12:31307356T>C	uc010sjy.1	-	7	724	c.724A>G	c.(724-726)AAA>GAA	p.K242E						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		ATTTGGGTTTTCCCTTGCACA	0.383													3	6					0	0	0.004672	0	0
RPL6	6128	broad.mit.edu	37	12	112843158	112843158	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr12:112843158C>T	uc001ttu.2	-	7	966	c.737G>A	c.(736-738)CGC>CAC	p.R246H	RPL6_uc001ttv.2_Missense_Mutation_p.R246H	NM_001024662	NP_001019833	Q02878	RL6_HUMAN	ribosomal protein L6	246					endocrine pancreas development|regulation of transcription, DNA-dependent|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	DNA binding|RNA binding|structural constituent of ribosome			large_intestine(1)	1						ATCAATCTTGCGCTGCTCCGT	0.393													14	32					0	0	0.003163	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr13:115047559C>T	uc001vup.2	+	2	308	c.271C>T	c.(271-273)CTG>TTG	p.L91L	UPF3A_uc010tkn.1_Silent_p.L91L|UPF3A_uc001vuq.2_Silent_p.L91L|UPF3A_uc001vus.2_RNA|UPF3A_uc001vur.2_RNA	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	91	Required for interaction with UPF2.				mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		GCTGCGCCCGCTGCCAGCACA	0.731													2	6					0	0	0.009096	0	0
DMXL2	23312	broad.mit.edu	37	15	51783908	51783908	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr15:51783908G>A	uc002abf.2	-	20	5045	c.4820C>T	c.(4819-4821)TCT>TTT	p.S1607F	DMXL2_uc010ufy.1_Missense_Mutation_p.S1607F|DMXL2_uc010bfa.2_Missense_Mutation_p.S971F	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1607						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TTCAGCCTCAGAATGAAAAGC	0.388													46	64					0	0	0.013114	0	0
CHD2	1106	broad.mit.edu	37	15	93567925	93567925	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr15:93567925G>A	uc002bsp.2	+	39	6052	c.5477G>A	c.(5476-5478)CGG>CAG	p.R1826Q		NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1826					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TGGAATGTTCGGAAAACATAA	0.428													3	35					0	0	0.009096	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67315014	67315014	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr16:67315014G>C	uc002eso.3	+	4	3275	c.740G>C	c.(739-741)GGA>GCA	p.G247A	PLEKHG4_uc002esp.3_Missense_Mutation_p.G54A|PLEKHG4_uc002esq.3_Missense_Mutation_p.G247A|PLEKHG4_uc002esr.1_Missense_Mutation_p.G95A|PLEKHG4_uc010cef.2_Missense_Mutation_p.G247A|PLEKHG4_uc002ess.3_Missense_Mutation_p.G247A|PLEKHG4_uc010ceg.2_Missense_Mutation_p.G166A	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	247					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		CAGGCACTGGGACTGACAGTG	0.552													54	45					0	0	0.014410	0	0
AP1G1	164	broad.mit.edu	37	16	71789972	71789972	+	Silent	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr16:71789972C>T	uc010cgg.2	-	12	1493	c.1179G>A	c.(1177-1179)GAG>GAA	p.E393E	AP1G1_uc002fba.2_Silent_p.E396E|AP1G1_uc002fbb.2_Silent_p.E416E	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	393					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				TAAATTCTGGCTCACACGAAT	0.378													52	71					0	0	0.014410	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904083	21904083	+	RNA	SNP	C	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr17:21904083C>A	uc002gza.2	+	1		c.22C>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ctgacctctccacggggtcca	0													4	19					0.00307968	0.00329966	0.003080	1	0
CCL23	6368	broad.mit.edu	37	17	34340315	34340315	+	Silent	SNP	G	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr17:34340315G>A	uc002hkt.1	-	4	356	c.285C>T	c.(283-285)GCC>GCT	p.A95A	CCL23_uc002hks.1_Silent_p.A112A	NM_145898	NP_665905	P55773	CCL23_HUMAN	small inducible cytokine A23 isoform CKbeta8	95					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response|negative regulation of cell proliferation	extracellular space	chemokine activity|heparin binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)	Treprostinil(DB00374)	CACTGGGGTTGGCACAGAAAC	0.527													3	57					0	0	0.004672	0	0
CDK12	51755	broad.mit.edu	37	17	37627488	37627488	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr17:37627488T>A	uc010cvv.2	+	2	1989	c.1403T>A	c.(1402-1404)CTA>CAA	p.L468Q	CDK12_uc010wef.1_Missense_Mutation_p.L467Q|CDK12_uc002hrw.3_Missense_Mutation_p.L468Q	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	468					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						GTAACACATCTAAACACAGAG	0.383										TCGA Ovarian(9;0.13)			48	120					0	0	0.013114	0	0
CLTC	1213	broad.mit.edu	37	17	57754485	57754485	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr17:57754485A>G	uc002ixq.1	+	17	3175	c.2732A>G	c.(2731-2733)AAG>AGG	p.K911R	CLTC_uc002ixp.2_Missense_Mutation_p.K911R|CLTC_uc002ixr.1_Missense_Mutation_p.K915R	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	911	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TATTGTGAGAAGAGAGATCCA	0.423			T	ALK|TFE3	ALCL|renal 								66	35					0	0	0.014410	0	0
SLC16A6	9120	broad.mit.edu	37	17	66267173	66267173	+	Silent	SNP	A	G	G			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr17:66267173A>G	uc002jgz.1	-	5	1316	c.1128T>C	c.(1126-1128)TTT>TTC	p.F376F	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Silent_p.F376F	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6	376	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	TAGCAAAAGTAAAGGCAAACA	0.443													75	40					0	0	0.014410	0	0
ROCK2	9475	broad.mit.edu	37	2	11354553	11354553	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr2:11354553C>T	uc002rbd.1	-	17	2422	c.1973G>A	c.(1972-1974)GGC>GAC	p.G658D		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	658	Potential.|Interaction with PPP1R12A.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		TAAGATTTTGCCGTTCTTTAA	0.303													3	65					0	0	0.009096	0	0
BIN1	274	broad.mit.edu	37	2	127828371	127828371	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr2:127828371T>C	uc002tns.1	-	3	532	c.187A>G	c.(187-189)AAG>GAG	p.K63E	BIN1_uc010yzf.1_Missense_Mutation_p.K39E|BIN1_uc010yzg.1_Missense_Mutation_p.K63E|BIN1_uc002tnu.1_Missense_Mutation_p.K63E|BIN1_uc002toa.1_Missense_Mutation_p.K63E|BIN1_uc002tnt.1_Missense_Mutation_p.K63E|BIN1_uc002tnv.1_Missense_Mutation_p.K63E|BIN1_uc002tnw.1_Missense_Mutation_p.K63E|BIN1_uc002tnx.1_Missense_Mutation_p.K63E|BIN1_uc002tny.1_Missense_Mutation_p.K63E|BIN1_uc002tnz.1_Missense_Mutation_p.K63E|BIN1_uc002tob.1_Missense_Mutation_p.K63E|BIN1_uc002toc.1_Missense_Mutation_p.K63E	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	63	BAR.|Interaction with BIN2.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		CGGAGATCCTTCTGCAGCCGG	0.647													19	22					0	0	0.014323	0	0
NEB	4703	broad.mit.edu	37	2	152512859	152512859	+	Silent	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr2:152512859C>T	uc010fnx.2	-	49	6494	c.6303G>A	c.(6301-6303)GAG>GAA	p.E2101E		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2101	Nebulin 55.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTTTCTTGTACTCCCGATCAG	0.483													57	81					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179433843	179433843	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr2:179433843G>C	uc010zfg.1	-	275	69536	c.69312C>G	c.(69310-69312)TAC>TAG	p.Y23104*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.Y16799*|TTN_uc010zfi.1_Nonsense_Mutation_p.Y16732*|TTN_uc010zfj.1_Nonsense_Mutation_p.Y16607*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24031							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGACTCTAAAGTAATAACTGC	0.418													91	123					0	0	0.014410	0	0
FRG1B	284802	broad.mit.edu	37	20	29625885	29625885	+	Missense_Mutation	SNP	A	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr20:29625885A>T	uc010ztl.1	+	2	71	c.39A>T	c.(37-39)AAA>AAT	p.K13N	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TCGCCCTGAAATCTGGCTATG	0.353													7	90					0	0	0.013537	0	0
ZGPAT	84619	broad.mit.edu	37	20	62340218	62340218	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr20:62340218G>A	uc002ygk.2	+	2	464	c.286G>A	c.(286-288)GCC>ACC	p.A96T	ARFRP1_uc002yga.2_5'Flank|ARFRP1_uc002ygc.2_5'Flank|ARFRP1_uc002ygh.3_5'Flank|ARFRP1_uc011abf.1_5'Flank|ARFRP1_uc011abg.1_5'Flank|ARFRP1_uc002yge.2_5'Flank|ARFRP1_uc002ygd.2_5'Flank|ARFRP1_uc002ygf.2_5'Flank|ARFRP1_uc002ygg.2_5'Flank|ARFRP1_uc011abh.1_5'Flank|ZGPAT_uc002ygi.2_Missense_Mutation_p.A96T|ZGPAT_uc002ygj.2_Missense_Mutation_p.A96T|ZGPAT_uc010gkk.1_Intron|ZGPAT_uc010gkl.1_Missense_Mutation_p.A96T|ZGPAT_uc002ygm.2_Missense_Mutation_p.A96T|ZGPAT_uc002ygn.3_RNA	NM_032527	NP_115916	Q8N5A5	ZGPAT_HUMAN	zinc finger, CCCH-type with G patch domain	96					negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					ACCAGCAGCGGCCCGTGGGTC	0.572													60	35					0	0	0.014410	0	0
TPTE	7179	broad.mit.edu	37	21	11014987	11014987	+	RNA	SNP	A	G	G			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr21:11014987A>G	uc002yis.1	-	7		c.1459T>C						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTATAGTTTCAATAGCAGACT	0.388													3	33					0	0	0.004672	0	0
FBXO7	25793	broad.mit.edu	37	22	32889131	32889131	+	Missense_Mutation	SNP	C	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr22:32889131C>A	uc003amq.2	+	7	1290	c.1007C>A	c.(1006-1008)CCA>CAA	p.P336Q	FBXO7_uc003amr.2_Missense_Mutation_p.P222Q|FBXO7_uc003ams.2_Missense_Mutation_p.P180Q|FBXO7_uc003amt.2_Missense_Mutation_p.P257Q|FBXO7_uc003amu.2_Missense_Mutation_p.P222Q|FBXO7_uc003amv.2_Missense_Mutation_p.P35Q	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	336	F-box.				cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						GTCGTCCTCCCATTGGAACTG	0.438													97	136					2.9551e-36	3.61849e-36	0.014410	1	0
Unknown	0	broad.mit.edu	37	3	12299722	12299722	+	RNA	SNP	G	A	A	rs35057507	by1000genomes	TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr3:12299722G>A	uc003bwp.1	-	1		c.231C>T				NR_003112				NR_003112																		GAAATGTGGCGCAGGATGGCG	0.507													51	96					0	0	0.014410	0	0
RBM6	10180	broad.mit.edu	37	3	50005960	50005960	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr3:50005960G>T	uc003cyc.2	+	3	1235	c.1102G>T	c.(1102-1104)GAT>TAT	p.D368Y	RBM6_uc011bdh.1_RNA|RBM6_uc010hlc.1_Intron|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	368					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		TCAAGACCAAGATAAGTCACA	0.463													39	45					2.51541e-25	3.01849e-25	0.021022	1	0
RRP9	9136	broad.mit.edu	37	3	51971298	51971298	+	Missense_Mutation	SNP	G	A	A	rs145537768	byFrequency	TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr3:51971298G>A	uc003dbw.1	-	6	466	c.427C>T	c.(427-429)CGG>TGG	p.R143W		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	143					rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		TGGTGCCCCCGTAAAACGCGA	0.557													4	105					0	0	0.009096	0	0
PET112L	5188	broad.mit.edu	37	4	152592364	152592364	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr4:152592364T>C	uc003iml.2	-	13	1648	c.1636A>G	c.(1636-1638)ATG>GTG	p.M546V	PET112L_uc003imk.2_RNA	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	546						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TCCTTTATCATGACTGGATCT	0.483													69	81					0	0	0.014410	0	0
F12	2161	broad.mit.edu	37	5	176831341	176831341	+	Silent	SNP	G	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr5:176831341G>A	uc003mgo.3	-	9	923	c.874C>T	c.(874-876)CTG>TTG	p.L292L	F12_uc011dfy.1_5'UTR|F12_uc003mgn.3_5'UTR|F12_uc010jkl.2_RNA	NM_000505	NP_000496	P00748	FA12_HUMAN	coagulation factor XII precursor	292	Kringle.				Factor XII activation|fibrinolysis|innate immune response|positive regulation of blood coagulation|positive regulation of fibrinolysis|positive regulation of plasminogen activation|protein autoprocessing|response to misfolded protein|zymogen activation	extracellular space|plasma membrane	serine-type endopeptidase activity				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CACTGTGCCAGGTCGCAGTAC	0.692									Hereditary_Angioedema		OREG0017088	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	18					0	0	0.013537	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32974906	32974906	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr6:32974906C>T	uc003ocr.2	-	4	776	c.700G>A	c.(700-702)GTG>ATG	p.V234M	HLA-DOA_uc010juj.2_Intron|HLA-DOA_uc010jui.2_3'UTR	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	234	Helical; (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						ACGGTGCCCACGAGGAAGCCC	0.627													6	88					0	0	0.001168	0	0
PLG	5340	broad.mit.edu	37	6	161152118	161152118	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr6:161152118C>T	uc003qtm.3	+	11	1355	c.1292C>T	c.(1291-1293)GCC>GTC	p.A431V		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	431	Kringle 4.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AATCCAGATGCCGATAAAGGC	0.507													4	111					0	0	0.009096	0	0
EDF1	8721	broad.mit.edu	37	9	139757816	139757816	+	Missense_Mutation	SNP	C	A	A			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr9:139757816C>A	uc004cjt.1	-	3	243	c.215G>T	c.(214-216)AGG>ATG	p.R72M	EDF1_uc004cju.1_Missense_Mutation_p.R72M	NM_003792	NP_003783	O60869	EDF1_HUMAN	endothelial differentiation-related factor 1	72	Interaction with TBP and NR5A1.|Interaction with NR5A2, PPARG and NR1H3.				endothelial cell differentiation|multicellular organismal development|positive regulation of DNA binding|positive regulation of transcription, DNA-dependent|regulation of lipid metabolic process|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleolus|nucleus	calmodulin binding|protein binding|protein binding|sequence-specific DNA binding|transcription coactivator activity				0	all_cancers(76;0.0841)|all_epithelial(76;0.217)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		CAGGGTCACCCTGTCATGGTG	0.617													16	25					3.41278e-10	3.93783e-10	0.004990	1	0
Unknown	0	broad.mit.edu	37	X	80185805	80185805	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chrX:80185805C>T	uc004eec.1	+	1	878	c.704C>T	c.(703-705)GCT>GTT	p.A235V						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		AACGTCAATGCTGGTGGCCAC	0.413													3	57					0	0	0.004672	0	0
FGGY	55277	broad.mit.edu	37	1	60133071	60133091	+	Splice_Site	DEL	TACTGGTAAGTCTGGGAAAGA	-	-	rs115318188	by1000genomes	TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr1:60133071_60133091delTACTGGTAAGTCTGGGAAAGA	uc001czi.3	+	13	1629	c.1417_splice	c.e13+1	p.G473_splice	FGGY_uc001czh.2_Splice_Site|FGGY_uc009wac.2_Splice_Site_p.G497_splice|FGGY_uc001czj.3_Splice_Site_p.G472_splice|FGGY_uc001czk.3_Splice_Site_p.G361_splice|FGGY_uc001czl.3_Splice_Site_p.G385_splice|FGGY_uc001czm.3_Splice_Site_p.G174_splice	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing						carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					ATGCGGACATTACTGGTAAGTCTGGGAAAGAGGAGAGAAGG	0.466													19	101	---	---	---	---					
OR52H1	390067	broad.mit.edu	37	11	5566652	5566652	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr11:5566652delC	uc010qzh.1	-	1	102	c.102delG	c.(100-102)TGGfs	p.W34fs	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAATTCCAATCCACACATGGA	0.473													27	45	---	---	---	---					
SAPS3	55291	broad.mit.edu	37	11	68318634	68318637	+	Frame_Shift_Del	DEL	CATC	-	-			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr11:68318634_68318637delCATC	uc001onw.2	+	6	865_868	c.598_601delCATC	c.(598-603)CATCCAfs	p.H200fs	SAPS3_uc010rqb.1_Frame_Shift_Del_p.H109fs|SAPS3_uc001onv.2_Frame_Shift_Del_p.H200fs|SAPS3_uc001ony.3_Frame_Shift_Del_p.H200fs|SAPS3_uc001onx.2_Frame_Shift_Del_p.H200fs|SAPS3_uc009ysh.2_Frame_Shift_Del_p.H200fs|SAPS3_uc001onu.2_Frame_Shift_Del_p.H200fs|SAPS3_uc010rqc.1_Intron	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	200_201					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			GGAAATAGTTCATCCATCGCAAGA	0.348													24	31	---	---	---	---					
SFRS2IP	9169	broad.mit.edu	37	12	46320707	46320708	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr12:46320707_46320708delTC	uc001rox.2	-	11	3063_3064	c.2776_2777delGA	c.(2776-2778)GAAfs	p.E926fs	SFRS2IP_uc001row.2_Frame_Shift_Del_p.E611fs|SFRS2IP_uc001roy.1_Frame_Shift_Del_p.E1000fs	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	926	Arg-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		GGTTCTCCTTTCTCTCTCTCTC	0.446													8	280	---	---	---	---					
SBNO1	55206	broad.mit.edu	37	12	123801801	123801802	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr12:123801801_123801802insT	uc010tap.1	-	20	2901_2902	c.2901_2902insA	c.(2899-2904)TTACCTfs	p.L967fs	SBNO1_uc010tao.1_Frame_Shift_Ins_p.L966fs|SBNO1_uc010taq.1_Intron|SBNO1_uc001ues.1_5'Flank	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	967_968							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		GCGCTCCAAGGTAATTCTAAAG	0.396													36	81	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45219612	45219612	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr17:45219612delA	uc002ild.3	-	11	1488	c.1361delT	c.(1360-1362)CTAfs	p.L454fs	CDC27_uc002ile.3_Frame_Shift_Del_p.L460fs|CDC27_uc002ilf.3_Frame_Shift_Del_p.L454fs|CDC27_uc010wkp.1_Frame_Shift_Del_p.L393fs|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	454					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TGCTTTTTGTAGATTAAAGGC	0.308													7	66	---	---	---	---					
NCOA3	8202	broad.mit.edu	37	20	46252817	46252817	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chr20:46252817delA	uc002xtk.2	+	4	451	c.246delA	c.(244-246)ATAfs	p.I82fs	NCOA3_uc010ght.1_Frame_Shift_Del_p.I82fs|NCOA3_uc002xtl.2_Frame_Shift_Del_p.I82fs|NCOA3_uc002xtm.2_Frame_Shift_Del_p.I82fs|NCOA3_uc002xtn.2_Frame_Shift_Del_p.I82fs|NCOA3_uc010zyc.1_5'Flank	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	82					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						TACGTCAAATAAAAGAGCAAG	0.239													17	72	---	---	---	---					
NAP1L2	4674	broad.mit.edu	37	X	72433664	72433666	+	In_Frame_Del	DEL	TCC	-	-			TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	g.chrX:72433664_72433666delTCC	uc004ebi.2	-	1	1019_1021	c.663_665delGGA	c.(661-666)GAGGAC>GAC	p.E221del	NAP1L2_uc011mqj.1_In_Frame_Del_p.E79del	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	221	Glu-rich (acidic).				nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					CTCAATGTCGtcctcctcctcct	0.330													9	61	---	---	---	---					
