Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOTCH2	4853	broad.mit.edu	37	1	120502127	120502127	+	Splice_Site	SNP	T	C	C			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr1:120502127T>C	uc001eik.2	-	12	2172	c.1916_splice	c.e12-1	p.G639_splice	NOTCH2_uc001eil.2_Splice_Site_p.G639_splice|NOTCH2_uc001eim.3_Splice_Site_p.G556_splice	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein						anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		AATTAACCCCTGGAAGAGAAA	0.403000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				14	40					0	0	0.105934	0	0
NUP210L	91181	broad.mit.edu	37	1	154062057	154062057	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr1:154062057C>T	uc001fdw.2	-	16	2273	c.2201G>A	c.(2200-2202)CGA>CAA	p.R734Q	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.R734Q	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	734						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			ATTTCCAATTCGGAATGTGAG	0.423000													44	74					0	0	0.111260	0	0
OR2T8	343172	broad.mit.edu	37	1	248084419	248084419	+	Silent	SNP	T	C	C			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr1:248084419T>C	uc010pzc.1	+	1	100	c.100T>C	c.(100-102)TTG>CTG	p.L34L		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GAGTATCGTTTTGACCTCCCT	0.488000													27	48					0	0	0.173368	0	0
OR2L8	391190	broad.mit.edu	37	1	248112252	248112252	+	Silent	SNP	T	C	C			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr1:248112252T>C	uc001idt.1	+	1	93	c.93T>C	c.(91-93)GTT>GTC	p.V31V	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TTCTCATTGTTTTCATTTTCC	0.393000													77	161					0	0	0.139131	0	0
KIF20B	9585	broad.mit.edu	37	10	91498265	91498265	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr10:91498265C>T	uc001kgs.1	+	20	3739	c.3667C>T	c.(3667-3669)CTC>TTC	p.L1223F	KIF20B_uc001kgr.1_Missense_Mutation_p.L1183F|KIF20B_uc001kgt.1_Missense_Mutation_p.L434F|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1223					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						TGTAAAGGAACTCAAGCTGAA	0.299000													13	23					0	0	0.175082	0	0
CABP2	51475	broad.mit.edu	37	11	67287316	67287316	+	Silent	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr11:67287316G>A	uc001omc.1	-	6	687	c.585C>T	c.(583-585)GAC>GAT	p.D195D	CABP2_uc001omd.1_Silent_p.D138D|CABP2_uc001ome.1_Silent_p.D201D	NM_016366	NP_057450	Q9NPB3	CABP2_HUMAN	calcium binding protein 2 isoform 1	195	EF-hand 4.				signal transduction	Golgi apparatus|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1						GGAGGATCTCGTCCACCTCCC	0.667000													17	58					0	0	0.049695	0	0
C11orf53	341032	broad.mit.edu	37	11	111154951	111154951	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr11:111154951C>T	uc001plc.2	+	3	305	c.158C>T	c.(157-159)GCG>GTG	p.A53V		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	53											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		CAGAGCCATGCGGCTCTCCTG	0.622000													5	193					0	0	0.014758	0	0
VPS11	55823	broad.mit.edu	37	11	118941054	118941054	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr11:118941054C>T	uc010ryx.1	+	5	625	c.583C>T	c.(583-585)CGC>TGC	p.R195C	VPS11_uc010ryy.1_Missense_Mutation_p.R41C	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	195					protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		ATTGGCCTTTCGCCAAGCAGG	0.517000													12	23					0	0	0.119110	0	0
SLC2A3	6515	broad.mit.edu	37	12	8083869	8083869	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr12:8083869C>T	uc001qtr.2	-	4	744	c.482G>A	c.(481-483)GGC>GAC	p.G161D	SLC2A3_uc001qts.2_Missense_Mutation_p.G161D	NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	161	Helical; Name=5; (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		AACAACGATGCCCAGCTGGTT	0.458000													26	100					0	0	0.108266	0	0
Unknown	0	broad.mit.edu	37	12	95228505	95228505	+	RNA	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr12:95228505G>A	uc001tdk.2	+	1		c.332G>A								Homo sapiens mRNA for keratin 19, partial cds, isolate:K19-141.																		TGAGTGACAGGCAAAGCCAAT	0.552000													8	5					0	0	0.047766	0	0
GPC5	2262	broad.mit.edu	37	13	92101015	92101015	+	Missense_Mutation	SNP	G	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr13:92101015G>T	uc010tif.1	+	2	530	c.164G>T	c.(163-165)GGA>GTA	p.G55V		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	55						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TGTGTTCCAGGACCTGATCTT	0.413000													22	46					1.10513e-12	1.35072e-12	0.069288	1	0
FAM155A	728215	broad.mit.edu	37	13	108518712	108518712	+	Missense_Mutation	SNP	T	C	C			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr13:108518712T>C	uc001vql.2	-	1	749	c.233A>G	c.(232-234)CAG>CGG	p.Q78R		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	78	Poly-Gln.					integral to membrane	binding			skin(1)	1						ctgctgctgctgccgctgctg	0.358000													4	82					0	0	0.150653	0	0
ACIN1	22985	broad.mit.edu	37	14	23550990	23550990	+	Silent	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr14:23550990C>T	uc001wit.3	-	5	994	c.666G>A	c.(664-666)AGG>AGA	p.R222R	ACIN1_uc001wis.3_5'Flank|ACIN1_uc010akg.2_Silent_p.R222R|ACIN1_uc010tnj.1_Silent_p.R182R	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	222	Glu-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		TTTCTCCTTTCCTTGGTTTCT	0.388000													33	67					0	0	0.080422	0	0
AK7	122481	broad.mit.edu	37	14	96875258	96875258	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr14:96875258C>T	uc001yfn.2	+	4	522	c.478C>T	c.(478-480)CGC>TGC	p.R160C		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	160	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		GACTTGGGCGCGCTCCAAAGC	0.473000													5	68					0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	15	20644046	20644046	+	Silent	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr15:20644046G>A	uc001ytg.2	-	23	3433	c.2724C>T	c.(2722-2724)TCC>TCT	p.S908S	uc010tyx.1_RNA|uc001yth.3_Silent_p.S908S					RecName: Full=Putative HERC2-like protein 3;																		CAGGGTTCTCGGAATCAGGGA	0.597000													16	19					0	0	0.160694	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42371771	42371771	+	Silent	SNP	C	G	G			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr15:42371771C>G	uc001zox.2	-	13	1376	c.1281G>C	c.(1279-1281)CTG>CTC	p.L427L		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	427	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		CTAGCGCCCACAGGTCCACAA	0.701000													11	15					0	0	0.069234	0	0
ITGA11	22801	broad.mit.edu	37	15	68620499	68620499	+	Missense_Mutation	SNP	C	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr15:68620499C>A	uc002ari.2	-	16	2090	c.2003G>T	c.(2002-2004)TGC>TTC	p.C668F	ITGA11_uc010bib.2_Missense_Mutation_p.C668F	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	668	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GGCGGCCAGGCAGGTGGCATC	0.577000													10	71					1.11149e-13	1.3804e-13	0.069234	1	0
ADAMTS7	11173	broad.mit.edu	37	15	79059182	79059182	+	Missense_Mutation	SNP	T	C	C	rs143974743		TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr15:79059182T>C	uc002bej.3	-	19	3282	c.3071A>G	c.(3070-3072)CAC>CGC	p.H1024R	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1024					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GGCCAGGTGGTGCGGGATGAA	0.682000													4	58					0	0	0.150653	0	0
CDYL2	124359	broad.mit.edu	37	16	80646582	80646582	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr16:80646582G>A	uc002ffs.2	-	5	1264	c.1159C>T	c.(1159-1161)CGC>TGC	p.R387C		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	387						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						GGCGTGAGGCGGATGGTGGCG	0.657000													37	83					0	0	0.069456	0	0
KIAA0664	23277	broad.mit.edu	37	17	2601443	2601443	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr17:2601443G>A	uc002fuy.1	-	10	1680	c.1594C>T	c.(1594-1596)CGG>TGG	p.R532W	KIAA0664_uc002fux.1_Missense_Mutation_p.R464W	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	532							binding			breast(2)	2						ACCTGGTGCCGCAGGATCTTG	0.637000													3	8					0	0	0.115264	0	0
OR3A4	390756	broad.mit.edu	37	17	3213993	3213993	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr17:3213993G>A	uc002fvi.2	+	1	455	c.389G>A	c.(388-390)TGC>TAC	p.C130Y		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						CTGGCCATCTGCCAGTCCCTC	0.562000													41	80					0	0	0.098360	0	0
MYOCD	93649	broad.mit.edu	37	17	12656007	12656007	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr17:12656007G>A	uc002gnn.2	+	10	1701	c.1402G>A	c.(1402-1404)GCT>ACT	p.A468T	MYOCD_uc002gno.2_Missense_Mutation_p.A468T|MYOCD_uc002gnp.1_Missense_Mutation_p.A372T|MYOCD_uc002gnq.2_Missense_Mutation_p.A187T	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	468	Ser-rich.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CCTGTCAGTCGCTGGGTCCCT	0.627000													37	67					0	0	0.064281	0	0
HGS	9146	broad.mit.edu	37	17	79657241	79657241	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr17:79657241G>A	uc002kbg.2	+	6	522	c.445G>A	c.(445-447)GAT>AAT	p.D149N	HGS_uc010wus.1_Missense_Mutation_p.D149N	NM_004712	NP_004703	O14964	HGS_HUMAN	hepatocyte growth factor-regulated tyrosine	149					cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of JAK-STAT cascade|regulation of protein catabolic process	cytosol|early endosome membrane|multivesicular body membrane	metal ion binding|protein domain specific binding			ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0955)			CAAAGAGAGCGATGCCATGTT	0.617000													39	70					0	0	0.117977	0	0
ZNF555	148254	broad.mit.edu	37	19	2852903	2852903	+	Silent	SNP	C	T	T	rs148620935		TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr19:2852903C>T	uc002lwo.2	+	4	929	c.840C>T	c.(838-840)GGC>GGT	p.G280G	ZNF555_uc002lwn.3_Silent_p.G279G	NM_152791	NP_690004	Q8NEP9	ZN555_HUMAN	zinc finger protein 555	280					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACACACTGGCGAGAAGCCAT	0.408000													22	55					0	0	0.076483	0	0
CD209	30835	broad.mit.edu	37	19	7810483	7810483	+	Missense_Mutation	SNP	C	A	A	rs11465379	byFrequency	TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr19:7810483C>A	uc002mht.2	-	4	736	c.669G>T	c.(667-669)AAG>AAT	p.K223N	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.K199N|CD209_uc002mhr.2_Missense_Mutation_p.K199N|CD209_uc002mhs.2_Intron|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Missense_Mutation_p.K223N|CD209_uc002mhq.2_Missense_Mutation_p.K223N|CD209_uc002mhv.2_Missense_Mutation_p.K199N|CD209_uc002mhx.2_Missense_Mutation_p.K179N|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	223	Extracellular (Probable).|6.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCACTGCAGCCTTCAGCCGGG	0.572000													39	144					1.26778e-28	1.62698e-28	0.139131	1	0
CD209	30835	broad.mit.edu	37	19	7810552	7810552	+	Missense_Mutation	SNP	C	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr19:7810552C>A	uc002mht.2	-	4	667	c.600G>T	c.(598-600)AAG>AAT	p.K200N	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.K176N|CD209_uc002mhr.2_Missense_Mutation_p.K176N|CD209_uc002mhs.2_Missense_Mutation_p.K176N|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Missense_Mutation_p.K200N|CD209_uc002mhq.2_Missense_Mutation_p.K200N|CD209_uc002mhv.2_Missense_Mutation_p.K176N|CD209_uc002mhx.2_Missense_Mutation_p.K156N|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	200	Extracellular (Probable).|5.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCACTGCAGCCTTCAGCCGGG	0.557000													6	216					0.000151284	0.000176499	0.105934	1	0
CCDC123	84902	broad.mit.edu	37	19	33392199	33392199	+	Missense_Mutation	SNP	T	C	C			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr19:33392199T>C	uc002nty.2	-	15	1774	c.1685A>G	c.(1684-1686)CAA>CGA	p.Q562R	CCDC123_uc002ntx.2_Missense_Mutation_p.Q315R|CCDC123_uc010edg.2_RNA	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	562	Potential.					centrosome|spindle pole					0	Esophageal squamous(110;0.137)					TGCTTTGTTTTGCTCTGTCAA	0.408000													33	134					0	0	0.074837	0	0
GPATCH1	55094	broad.mit.edu	37	19	33608853	33608853	+	Silent	SNP	A	G	G			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr19:33608853A>G	uc002nug.1	+	16	2633	c.2319A>G	c.(2317-2319)CAA>CAG	p.Q773Q	GPATCH1_uc002nuh.1_Silent_p.Q150Q	NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	773						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					AGGATGAGCAAGGTGACAGTG	0.537000													25	55					0	0	0.108266	0	0
LILRA2	11027	broad.mit.edu	37	19	55087420	55087420	+	Missense_Mutation	SNP	C	G	G			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr19:55087420C>G	uc002qgg.3	+	6	1188	c.1099C>G	c.(1099-1101)CTG>GTG	p.L367V	LILRA2_uc010ern.2_Missense_Mutation_p.L367V|LILRA2_uc002qgf.2_Missense_Mutation_p.L367V|LILRA2_uc010yfe.1_Missense_Mutation_p.L367V|LILRA2_uc010yff.1_Missense_Mutation_p.L355V|LILRA2_uc010ero.2_Missense_Mutation_p.L355V|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	367	Ig-like C2-type 4.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		CCCACTGCATCTGAGATCAGA	0.587000													34	94					0	0	0.092188	0	0
HJURP	55355	broad.mit.edu	37	2	234750376	234750376	+	Missense_Mutation	SNP	C	G	G			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr2:234750376C>G	uc002vvg.2	-	8	1116	c.1050G>C	c.(1048-1050)AAG>AAC	p.K350N	HJURP_uc010znd.1_Missense_Mutation_p.K289N|HJURP_uc010zne.1_Missense_Mutation_p.K258N	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	350					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		TTAAACCTGTCTTACGGCAAG	0.443000													21	37					0	0	0.062417	0	0
RIPK4	54101	broad.mit.edu	37	21	43161015	43161015	+	Missense_Mutation	SNP	G	A	A	rs140909597		TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr21:43161015G>A	uc002yzn.1	-	8	2386	c.2338C>T	c.(2338-2340)CGG>TGG	p.R780W		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	780						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						TTGCTTCGCCGCAGGAGCGTG	0.667000													15	29					0	0	0.132662	0	0
LOC96610	96610	broad.mit.edu	37	22	22663086	22663087	+	RNA	DNP	TA	GG	GG	rs1054157	by1000genomes	TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr22:22663086_22663087TA>GG	uc011aim.1	+	29		c.1859_1860TA>GG			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AGCTGCCACATAAGTTGTCCTT	0.302000													8	41					0	0	0.115264	0	0
HPS3	84343	broad.mit.edu	37	3	148884979	148884979	+	Silent	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr3:148884979G>A	uc003ewu.1	+	15	2888	c.2748G>A	c.(2746-2748)CCG>CCA	p.P916P	CP_uc011bnr.1_Intron|HPS3_uc011bnq.1_Silent_p.P751P|HPS3_uc003ewv.1_RNA	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	916						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			AGAGATGCCCGGAGGCAGTCA	0.413000									Hermansky-Pudlak_syndrome				3	57					0	0	0.115264	0	0
TRA2B	6434	broad.mit.edu	37	3	185639892	185639892	+	Missense_Mutation	SNP	A	C	C			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr3:185639892A>C	uc003fpv.2	-	5	821	c.545T>G	c.(544-546)ATG>AGG	p.M182R	TRA2B_uc003fpt.2_RNA|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_Missense_Mutation_p.M82R|TRA2B_uc003fpw.2_Missense_Mutation_p.M182R	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	182	RRM.				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						ATCAAGCTCCATTCCATTGGC	0.408000													12	46					0	0	0.093190	0	0
MUC4	4585	broad.mit.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	C	C			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr3:195505836G>C	uc011bto.1	-	3	12691	c.12231C>G	c.(12229-12231)CAC>CAG	p.H4077Q	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GAGGGGTGGCGTGACCTGTGG	0.597000													4	6					0	0	0.150653	0	0
NCAPG	64151	broad.mit.edu	37	4	17843981	17843981	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr4:17843981C>T	uc003gpp.2	+	20	3079	c.2903C>T	c.(2902-2904)ACT>ATT	p.T968I	NCAPG_uc011bxj.1_Missense_Mutation_p.T477I	NM_022346	NP_071741	Q9BPX3	CND3_HUMAN	chromosome condensation protein G	968					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	protein binding			large_intestine(1)	1				STAD - Stomach adenocarcinoma(129;0.18)		AGGTGTCAGACTGCTGAAGCC	0.353000													17	27					0	0	0.175082	0	0
C4orf7	260436	broad.mit.edu	37	4	71096961	71096961	+	Missense_Mutation	SNP	G	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr4:71096961G>T	uc003hfd.2	+	2	135	c.50G>T	c.(49-51)GGT>GTT	p.G17V		NM_152997	NP_694542	Q8NFU4	FDSCP_HUMAN	chromosome 4 open reading frame 7 precursor	17						extracellular region				central_nervous_system(1)	1						GTGGCTGTTGGTTTCCCAGTA	0.249000													45	95					4.1673e-28	5.26037e-28	0.139131	1	0
ADAMTS12	81792	broad.mit.edu	37	5	33648939	33648939	+	Silent	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr5:33648939G>A	uc003jia.1	-	9	1630	c.1467C>T	c.(1465-1467)TGC>TGT	p.C489C	ADAMTS12_uc010iuq.1_Silent_p.C489C	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	489	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CTACTTCCTGGCAGAAGGTAG	0.473000										HNSCC(64;0.19)			29	110					0	0	0.108266	0	0
SHROOM1	134549	broad.mit.edu	37	5	132159379	132159379	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr5:132159379G>A	uc003kxx.2	-	8	2694	c.1889C>T	c.(1888-1890)CCT>CTT	p.P630L	SHROOM1_uc003kxy.1_Missense_Mutation_p.P630L	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	630	ASD2.				actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GTCAAGCACAGGGTGGGTGGC	0.612000													40	96					0	0	0.080422	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188796	140188796	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr5:140188796C>T	uc003lhi.2	+	1	2125	c.2024C>T	c.(2023-2025)GCG>GTG	p.A675V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.A675V|PCDHA4_uc011daa.1_Missense_Mutation_p.A675V	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	675	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTGGACAGGCGCCAAAGGCC	0.657000													16	77					0	0	0.160694	0	0
SLC36A2	153201	broad.mit.edu	37	5	150704990	150704990	+	Missense_Mutation	SNP	C	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr5:150704990C>A	uc003lty.2	-	8	997	c.867G>T	c.(865-867)ATG>ATT	p.M289I	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Missense_Mutation_p.M91I|SLC36A2_uc010jhv.2_Missense_Mutation_p.M289I	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	289	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGGCATTCTTCATCTTGTTTT	0.368000													24	46					1.22574e-08	1.47472e-08	0.069288	1	0
FAT2	2196	broad.mit.edu	37	5	150922417	150922417	+	Silent	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr5:150922417G>A	uc003lue.3	-	9	8284	c.8271C>T	c.(8269-8271)CAC>CAT	p.H2757H	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2757	Cadherin 24.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGTGGATTCGTGGTCCATGG	0.512000													49	114					0	0	0.139131	0	0
ATP10B	23120	broad.mit.edu	37	5	160047525	160047525	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr5:160047525G>A	uc003lym.1	-	15	3092	c.2245C>T	c.(2245-2247)CGC>TGC	p.R749C	ATP10B_uc010jit.1_Missense_Mutation_p.R66C|ATP10B_uc003lyn.2_Missense_Mutation_p.R307C	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	749	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGGGCAGGCGCACAGTCACC	0.617000													16	38					0	0	0.132662	0	0
DSP	1832	broad.mit.edu	37	6	7571618	7571618	+	Silent	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr6:7571618G>A	uc003mxp.1	+	14	1983	c.1704G>A	c.(1702-1704)CTG>CTA	p.L568L	DSP_uc003mxq.1_Silent_p.L568L	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	568	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CCTTTCAGCTGAAAACAATGC	0.453000													110	200					0	0	0.139131	0	0
DSP	1832	broad.mit.edu	37	6	7571689	7571689	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr6:7571689G>A	uc003mxp.1	+	14	2054	c.1775G>A	c.(1774-1776)AGA>AAA	p.R592K	DSP_uc003mxq.1_Missense_Mutation_p.R592K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	592	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAGTTCATCAGAAATAGCCAA	0.453000													95	171					0	0	0.139131	0	0
HLA-F	3134	broad.mit.edu	37	6	29693049	29693049	+	Silent	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr6:29693049C>T	uc010jrl.2	+	4	976	c.852C>T	c.(850-852)CAC>CAT	p.H284H	HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Silent_p.H284H|HLA-F_uc011dlx.1_Silent_p.H284H|HLA-F_uc011dly.1_RNA	NM_018950	NP_061823	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	284	Alpha-3.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						ATGTGCAGCACGAGGGGCTGC	0.597000													22	61					0	0	0.069288	0	0
CRISP3	10321	broad.mit.edu	37	6	49701500	49701500	+	Missense_Mutation	SNP	G	C	C			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr6:49701500G>C	uc003ozs.2	-	5	354	c.339C>G	c.(337-339)ATC>ATG	p.I113M		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	113					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			ACCAGCTTTGGATTGCTTGTG	0.433000													49	94					0	0	0.139131	0	0
BAI3	577	broad.mit.edu	37	6	70048901	70048901	+	Silent	SNP	C	T	T	rs138734026		TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr6:70048901C>T	uc003pev.3	+	25	3730	c.3282C>T	c.(3280-3282)AAC>AAT	p.N1094N	BAI3_uc010kak.2_Silent_p.N1094N|BAI3_uc011dxx.1_Silent_p.N300N|BAI3_uc003pex.1_Silent_p.N224N	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1094	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CCGCCAGTAACGCCATGTTAG	0.398000													49	143					0	0	0.139131	0	0
LACE1	246269	broad.mit.edu	37	6	108768486	108768486	+	Missense_Mutation	SNP	A	G	G			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr6:108768486A>G	uc003psj.2	+	8	1063	c.877A>G	c.(877-879)AAA>GAA	p.K293E		NM_145315	NP_660358	Q8WV93	LACE1_HUMAN	lactation elevated 1	293							ATP binding			central_nervous_system(1)	1		all_cancers(87;1.5e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;6.79e-05)|Colorectal(196;0.0294)|all_lung(197;0.0486)|Lung SC(18;0.152)		BRCA - Breast invasive adenocarcinoma(108;0.00179)|Epithelial(106;0.0024)|all cancers(137;0.00379)|OV - Ovarian serous cystadenocarcinoma(136;0.0118)		TGCTGCAGGAAAACTCTACTA	0.328000													22	38					0	0	0.099896	0	0
CDC40	51362	broad.mit.edu	37	6	110533410	110533410	+	Missense_Mutation	SNP	A	G	G	rs147439944	byFrequency	TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr6:110533410A>G	uc003pua.2	+	7	826	c.802A>G	c.(802-804)ACT>GCT	p.T268A		NM_015891	NP_056975	O60508	PRP17_HUMAN	cell division cycle 40 homolog	268					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm					0		all_cancers(87;6.23e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		Epithelial(106;0.0221)|all cancers(137;0.0314)|OV - Ovarian serous cystadenocarcinoma(136;0.034)		TCTACGGTCAACTATGCCACC	0.383000													35	50					0	0	0.069456	0	0
COL1A2	1278	broad.mit.edu	37	7	94043557	94043557	+	Silent	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr7:94043557C>T	uc003ung.1	+	29	2160	c.1689C>T	c.(1687-1689)CCC>CCT	p.P563P	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	563					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CCTCAGGTCCCGCTGGTGAAG	0.428000										HNSCC(75;0.22)			11	46					0	0	0.105934	0	0
LRRC17	10234	broad.mit.edu	37	7	102574365	102574365	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr7:102574365G>A	uc003vau.2	+	2	394	c.5G>A	c.(4-6)CGT>CAT	p.R2H	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_Missense_Mutation_p.R2H	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	2					bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						GTCAGGATGCGTGTGGTTACC	0.493000													14	22					0	0	0.105934	0	0
RELN	5649	broad.mit.edu	37	7	103338477	103338477	+	Silent	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr7:103338477C>T	uc003vca.2	-	10	1126	c.966G>A	c.(964-966)GAG>GAA	p.E322E	RELN_uc010liz.2_Silent_p.E322E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	322					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATTGGACATTCTCCCCTTTGG	0.458000													66	178					0	0	0.139131	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729419	37729419	+	Silent	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr8:37729419C>T	uc003xkm.1	-	4	2945	c.2901G>A	c.(2899-2901)TCG>TCA	p.S967S	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Silent_p.S296S|RAB11FIP1_uc003xko.1_Silent_p.S296S|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	967					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			TTTCATCATCCGATGCGACTT	0.453000													40	87					0	0	0.104719	0	0
PCMTD1	115294	broad.mit.edu	37	8	52733191	52733191	+	Missense_Mutation	SNP	G	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr8:52733191G>T	uc003xqx.3	-	6	1135	c.794C>A	c.(793-795)GCC>GAC	p.A265D	PCMTD1_uc011ldm.1_Missense_Mutation_p.A135D|PCMTD1_uc003xqw.3_Missense_Mutation_p.A265D|PCMTD1_uc011ldn.1_Missense_Mutation_p.A77D|PCMTD1_uc010lya.2_Missense_Mutation_p.A189D	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	265						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				AATCCCCTTGGCCTGCATCTC	0.413000													5	185					1.76689e-08	2.09309e-08	0.058154	1	0
SOX17	64321	broad.mit.edu	37	8	55372202	55372202	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr8:55372202G>A	uc003xsb.3	+	2	1096	c.892G>A	c.(892-894)GGC>AGC	p.G298S		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	298	Sox C-terminal.				angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			CGTGTACTACGGCGCGATGGG	0.542000													2	0					0	0	0.115264	0	0
EPPK1	83481	broad.mit.edu	37	8	144942253	144942253	+	Silent	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr8:144942253G>A	uc003zaa.1	-	1	5182	c.5169C>T	c.(5167-5169)GAC>GAT	p.D1723D		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1723	Plectin 30.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCTTGGTGTCGTCGCTGGGGT	0.657000													48	84					0	0	0.139131	0	0
LOC442421	442421	broad.mit.edu	37	9	66500841	66500841	+	RNA	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr9:66500841C>T	uc004aed.1	+	3		c.934C>T								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						CCACCTGGTGCCCAGGGCTCC	0.632000													3	34					0	0	0.038147	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900626	112900626	+	Silent	SNP	C	T	T			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr9:112900626C>T	uc004bei.2	+	9	3690	c.3498C>T	c.(3496-3498)GAC>GAT	p.D1166D	PALM2-AKAP2_uc004bek.3_Silent_p.D934D|PALM2-AKAP2_uc004bej.3_Silent_p.D934D|PALM2-AKAP2_uc004bel.1_Silent_p.D744D|AKAP2_uc011lwi.1_Silent_p.D792D|AKAP2_uc004bem.2_Silent_p.D792D|PALM2-AKAP2_uc010mtw.1_Silent_p.D752D|AKAP2_uc011lwj.1_Silent_p.D703D|PALM2-AKAP2_uc004ben.2_Silent_p.D703D	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	703							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						AAGAATCTGACGTGATGGTTG	0.547000													13	39					0	0	0.093190	0	0
OLFM1	10439	broad.mit.edu	37	9	137998621	137998621	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr9:137998621G>A	uc010nar.2	+	5	1019	c.703G>A	c.(703-705)GAC>AAC	p.D235N	OLFM1_uc004cfl.3_Missense_Mutation_p.D217N|OLFM1_uc004cfn.3_5'UTR	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	235	Olfactomedin-like.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		GGGCATCAGTGACCCCGTGAC	0.527000													8	22					0	0	0.058154	0	0
PIK3R1	5295	broad.mit.edu	37	5	67589632	67589634	+	In_Frame_Del	DEL	ATT	-	-			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr5:67589632_67589634delATT	uc003jva.2	+	11	1955_1957	c.1395_1397delATT	c.(1393-1398)AGATTA>AGA	p.L466del	PIK3R1_uc003jvb.2_In_Frame_Del_p.L466del|PIK3R1_uc003jvc.2_In_Frame_Del_p.L166del|PIK3R1_uc003jvd.2_In_Frame_Del_p.L196del|PIK3R1_uc003jve.2_In_Frame_Del_p.L145del|PIK3R1_uc011crb.1_In_Frame_Del_p.L136del	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	466					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.D434_Q475del(2)|p.Y463_L466del(1)|p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	AATATGATAGATTATATGAAGAA	0.291			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			14	51	---	---	---	---					
FAM135B	51059	broad.mit.edu	37	8	139158292	139158292	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CS-6188-01A-11D-1893-08	TCGA-CS-6188-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	adacd0a6-53f0-46c1-9f59-e30cb1b56164	1026b480-665c-4646-8fec-982cc07dca1e	g.chr8:139158292delC	uc003yuy.2	-	15	3621	c.3450delG	c.(3448-3450)GGGfs	p.G1150fs	FAM135B_uc003yux.2_Frame_Shift_Del_p.G1051fs|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Frame_Shift_Del_p.G712fs|FAM135B_uc003yvb.2_Frame_Shift_Del_p.E678fs	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1150										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CTGCACTGTTCCCTAAAAATG	0.448										HNSCC(54;0.14)			32	97	---	---	---	---					
