Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DBT	1629	broad.mit.edu	37	1	100696303	100696303	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr1:100696303G>A	uc001dta.2	-	4	452	c.419C>T	c.(418-420)ACG>ATG	p.T140M	DBT_uc010oug.1_Translation_Start_Site	NM_001918	NP_001909	P11182	ODB2_HUMAN	dihydrolipoamide branched chain transacylase	140					branched chain family amino acid catabolic process|fatty-acyl-CoA biosynthetic process	microtubule cytoskeleton|mitochondrial alpha-ketoglutarate dehydrogenase complex|mitochondrial nucleoid	acyltransferase activity|cofactor binding|dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity|protein binding			pancreas(1)	1		all_epithelial(167;5.4e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0739)|all cancers(265;0.123)|COAD - Colon adenocarcinoma(174;0.154)|Lung(183;0.199)		TAAAGCTTCCGTTTCTATGTC	0.318000													14	21					0	0	0.457914	0	0
IGSF9	57549	broad.mit.edu	37	1	159900616	159900616	+	Missense_Mutation	SNP	A	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr1:159900616A>G	uc001fur.2	-	14	1877	c.1679T>C	c.(1678-1680)TTG>TCG	p.L560S	IGSF9_uc001fuq.2_Missense_Mutation_p.L544S|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	560	Fibronectin type-III 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			AGGCACTGCCAAGGACACCCA	0.617000													10	38					0	0	0.335167	0	0
CDK18	5129	broad.mit.edu	37	1	205492349	205492349	+	Silent	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr1:205492349C>T	uc001hcr.2	+	2	273	c.54C>T	c.(52-54)CCC>CCT	p.P18P	CDK18_uc009xbk.1_Intron|CDK18_uc009xbl.1_RNA|CDK18_uc010pri.1_5'UTR|CDK18_uc001hcp.2_Silent_p.P18P|CDK18_uc001hcq.2_Silent_p.P18P|CDK18_uc010prj.1_5'UTR|CDK18_uc001hcs.2_5'UTR|CDK18_uc009xbm.1_5'Flank	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	16							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						TGTCAGTGCCCCGCACTGAGA	0.552000													40	62					0	0	0.834066	0	0
URB2	9816	broad.mit.edu	37	1	229773892	229773892	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr1:229773892G>A	uc001hts.1	+	4	3668	c.3532G>A	c.(3532-3534)GCC>ACC	p.A1178T	URB2_uc009xfd.1_Missense_Mutation_p.A1178T	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	1178						nucleolus				central_nervous_system(2)|ovary(1)	3						TTTTCAGGCAGCCTTGCAGTT	0.498000													27	89					0	0	0.693898	0	0
CTNNA3	29119	broad.mit.edu	37	10	69366623	69366623	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr10:69366623C>T	uc009xpn.1	-	3	407	c.284G>A	c.(283-285)CGC>CAC	p.R95H	CTNNA3_uc001jmw.2_Missense_Mutation_p.R95H|CTNNA3_uc001jmx.3_Missense_Mutation_p.R95H|CTNNA3_uc009xpo.1_Missense_Mutation_p.A11T|CTNNA3_uc001jna.2_Missense_Mutation_p.R107H	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	95	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						ACTTTCTTTGCGAACTTCCTC	0.423000													24	102					0	0	0.654019	0	0
ATG2A	23130	broad.mit.edu	37	11	64674138	64674138	+	Silent	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr11:64674138T>C	uc001obx.2	-	20	3097	c.2982A>G	c.(2980-2982)CGA>CGG	p.R994R		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	994							protein binding			ovary(1)|central_nervous_system(1)	2						GCCTCACACCTCGGTGGTAGA	0.617000													13	112					0	0	0.435327	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103056994	103056994	+	Silent	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr11:103056994T>C	uc001pho.2	+	42	6801	c.6657T>C	c.(6655-6657)TCT>TCC	p.S2219S	DYNC2H1_uc001phn.1_Silent_p.S2219S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2219					cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CACGAGAATCTCCTCCAGACT	0.378000													8	34					0	0	0.335167	0	0
SCN2B	6327	broad.mit.edu	37	11	118037639	118037639	+	Missense_Mutation	SNP	G	A	A	rs140034265		TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr11:118037639G>A	uc001psf.2	-	4	802	c.611C>T	c.(610-612)ACG>ATG	p.T204M		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	204	Cytoplasmic (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		TTCACCGTCCGTCTTGCCCTC	0.602000													52	70					0	0	0.870114	0	0
DCP1B	196513	broad.mit.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr12:2062350C>G	uc001qjx.1	-	7	836	c.756G>C	c.(754-756)CAG>CAC	p.Q252H	DCP1B_uc010sdy.1_Missense_Mutation_p.Q150H	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	252	Poly-Gln.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			gctgctgctgctgGTGGAGAG	0.458000													4	112					0	0	0.150653	0	0
KRT5	3852	broad.mit.edu	37	12	52913647	52913647	+	Missense_Mutation	SNP	A	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr12:52913647A>G	uc001san.2	-	1	597	c.434T>C	c.(433-435)GTC>GCC	p.V145A	KRT5_uc009zmh.2_Missense_Mutation_p.V145A	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	145	Head.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		ACTCTGGTTGACAGTGACCTC	0.453000													20	99					0	0	0.575678	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85518209	85518209	+	Missense_Mutation	SNP	A	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr12:85518209A>G	uc001tac.2	+	17	4030	c.3919A>G	c.(3919-3921)ATT>GTT	p.I1307V	LRRIQ1_uc001tab.1_Missense_Mutation_p.I1307V	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1307										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GGCAAGCAGTATTCCCACCAT	0.373000													7	320					0	0	0.307466	0	0
LATS2	26524	broad.mit.edu	37	13	21549263	21549263	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr13:21549263C>T	uc009zzs.2	-	8	3378	c.3013G>A	c.(3013-3015)GTA>ATA	p.V1005I	LATS2_uc001unr.3_Missense_Mutation_p.V1005I	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	1005	AGC-kinase C-terminal.				cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		TCTTCATCTACGGGGTCGAAA	0.557000													32	154					0	0	0.769981	0	0
SHC4	399694	broad.mit.edu	37	15	49148220	49148220	+	Missense_Mutation	SNP	A	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr15:49148220A>C	uc001zxb.1	-	8	1601	c.1172T>G	c.(1171-1173)ATG>AGG	p.M391R	SHC4_uc010uey.1_Missense_Mutation_p.M148R|SHC4_uc010uez.1_Missense_Mutation_p.M105R	NM_203349	NP_976224	Q6S5L8	SHC4_HUMAN	rai-like protein	391	CH1.				intracellular signal transduction	cell junction|postsynaptic membrane				ovary(3)|pancreas(2)	5		all_lung(180;0.00466)		all cancers(107;9.4e-08)|GBM - Glioblastoma multiforme(94;5.94e-07)		TTTGATCCGCATATCTGAAAC	0.428000													19	138					0	0	0.557998	0	0
TLE3	7090	broad.mit.edu	37	15	70366872	70366872	+	Silent	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr15:70366872C>T	uc002asm.2	-	6	1491	c.372G>A	c.(370-372)GGG>GGA	p.G124G	TLE3_uc002ask.2_Silent_p.G58G|TLE3_uc002asl.2_Silent_p.G130G|TLE3_uc010ukd.1_Silent_p.G117G|TLE3_uc010bik.1_Intron|TLE3_uc010bil.1_Silent_p.G124G|TLE3_uc002asn.2_Silent_p.G124G|TLE3_uc002asp.2_Silent_p.G124G|TLE3_uc002aso.2_Silent_p.G124G|TLE3_uc010bim.1_RNA	NM_005078	NP_005069	Q04726	TLE3_HUMAN	transducin-like enhancer protein 3 isoform a	124	Gln-rich.				organ morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|protein binding			lung(2)	2						GTCCACGTACCCCGATGATGG	0.557000													4	28					0	0	0.184627	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78290635	78290635	+	Missense_Mutation	SNP	C	T	T	rs117285325	by1000genomes	TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr15:78290635C>T	uc002bcy.3	-	13	2759	c.2759G>A	c.(2758-2760)CGA>CAA	p.R920Q	TBC1D2B_uc010bla.2_Missense_Mutation_p.D903N	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	920						intracellular	protein binding|Rab GTPase activator activity	p.D903N(1)		ovary(1)|large_intestine(1)|breast(1)	3						GTAGGCGCGTCGGTTCCGGAT	0.617000													4	14					0	0	0.217242	0	0
WASH3P	374666	broad.mit.edu	37	15	102515335	102515335	+	Missense_Mutation	SNP	C	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr15:102515335C>G	uc002cdi.2	+	9	1979	c.559C>G	c.(559-561)CTG>GTG	p.L187V	WASH3P_uc002cdl.2_Missense_Mutation_p.L187V|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.L187V|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						GGAGCGAAAGCTGGAGAAGAA	0.652000													3	46					0	0	0.150653	0	0
C17orf53	78995	broad.mit.edu	37	17	42231994	42231994	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr17:42231994G>A	uc002ifi.1	+	6	1708	c.1523G>A	c.(1522-1524)AGC>AAC	p.S508N	C17orf53_uc010czq.1_Missense_Mutation_p.S507N|C17orf53_uc002ifj.1_Missense_Mutation_p.S432N|C17orf53_uc002ifk.1_RNA	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	508											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		CTGACTCGGAGCACAATGGAC	0.552000													12	102					0	0	0.435327	0	0
MATK	4145	broad.mit.edu	37	19	3783831	3783831	+	Missense_Mutation	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr19:3783831T>C	uc002lyt.2	-	6	963	c.563A>G	c.(562-564)AAC>AGC	p.N188S	MATK_uc002lyv.2_Missense_Mutation_p.N189S|MATK_uc002lyu.2_Missense_Mutation_p.N147S|MATK_uc010dtq.2_Missense_Mutation_p.N188S	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	188	SH2.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCCATGAGGTTGCAGAAGAA	0.637000													6	47					0	0	0.248553	0	0
CIC	23152	broad.mit.edu	37	19	42791394	42791394	+	Splice_Site	SNP	T	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr19:42791394T>G	uc002otf.1	+	3	492	c.452_splice	c.e3+2	p.A151_splice		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				TGATGATGCGTGAGTTCCCTG	0.652000			T	DUX4	soft tissue sarcoma								3	14					0	0	0.150653	0	0
PGLYRP1	8993	broad.mit.edu	37	19	46526067	46526067	+	Silent	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr19:46526067G>A	uc002pdx.1	-	1	257	c.213C>T	c.(211-213)GCC>GCT	p.A71A		NM_005091	NP_005082	O75594	PGRP1_HUMAN	peptidoglycan recognition protein 1 precursor	71					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region	bacterial cell surface binding|N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)	2		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.0036)|GBM - Glioblastoma multiforme(486;0.022)|Epithelial(262;0.208)		GCTGGCACGAGGCGGGGGTGT	0.652000													9	22					0	0	0.307466	0	0
WASH2P	375260	broad.mit.edu	37	2	114356239	114356239	+	Silent	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr2:114356239T>C	uc002tkh.2	+	6	775	c.717T>C	c.(715-717)CGT>CGC	p.R239R	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCTTTGCCCGTGTGTCAGACT	0.642000													3	11					0	0	0.184627	0	0
PTPN4	5775	broad.mit.edu	37	2	120718482	120718482	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr2:120718482G>A	uc002tmf.1	+	23	3004	c.2233G>A	c.(2233-2235)GGC>AGC	p.G745S	PTPN4_uc010flj.1_Missense_Mutation_p.G458S|PTPN4_uc010yyr.1_Missense_Mutation_p.G378S	NM_002830	NP_002821	P29074	PTN4_HUMAN	protein tyrosine phosphatase, non-receptor type	745	Tyrosine-protein phosphatase.					cytoplasm|cytoskeleton|internal side of plasma membrane	cytoskeletal protein binding|non-membrane spanning protein tyrosine phosphatase activity			ovary(2)	2					Alendronate(DB00630)	TTGGGAACAAGGCTCCTCTAT	0.393000													55	83					0	0	0.870114	0	0
MYO3B	140469	broad.mit.edu	37	2	171264279	171264279	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr2:171264279G>A	uc002ufy.2	+	22	2718	c.2575G>A	c.(2575-2577)GAT>AAT	p.D859N	MYO3B_uc002ufv.2_Missense_Mutation_p.D846N|MYO3B_uc010fqb.1_Missense_Mutation_p.D846N|MYO3B_uc002ufz.2_Missense_Mutation_p.D859N|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	859	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						TCTCCCTGCCGATGTGGTTGT	0.463000													6	184					0	0	0.248553	0	0
TTN	7273	broad.mit.edu	37	2	179589234	179589234	+	Silent	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr2:179589234C>T	uc010zfg.1	-	69	17360	c.17136G>A	c.(17134-17136)CCG>CCA	p.P5712P	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.P2373P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6639							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCACCGTCATCGGTCCTGCCT	0.478000													16	36					0	0	0.520397	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								32	45					0	0	0.760397	0	0
CXCR2	3579	broad.mit.edu	37	2	218999633	218999633	+	Missense_Mutation	SNP	G	A	A	rs75759064	by1000genomes	TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr2:218999633G>A	uc002vgz.1	+	4	334	c.109G>A	c.(109-111)GCC>ACC	p.A37T	CXCR2_uc002vha.1_Missense_Mutation_p.A37T|CXCR2_uc002vhb.1_Missense_Mutation_p.A37T	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	37	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						ACTAGATGCCGCCCCATGTGA	0.448000													7	212					0	0	0.248553	0	0
UGT1A7	54577	broad.mit.edu	37	2	234591431	234591431	+	Missense_Mutation	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr2:234591431T>C	uc002vut.2	+	1	848	c.848T>C	c.(847-849)GTG>GCG	p.V283A	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.V283A	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	283					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GGAAAGCCAGTGCCTATGGTA	0.368000													32	191					0	0	0.769981	0	0
FRG1B	284802	broad.mit.edu	37	20	29628263	29628263	+	Missense_Mutation	SNP	A	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr20:29628263A>G	uc010ztl.1	+	3	207	c.175A>G	c.(175-177)ATT>GTT	p.I59V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.I11V					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TAGCTGCTTTATTAGATGCAA	0.363000													6	86					0	0	0.278610	0	0
ATP9A	10079	broad.mit.edu	37	20	50256040	50256040	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr20:50256040C>T	uc002xwg.1	-	15	1510	c.1510G>A	c.(1510-1512)GCC>ACC	p.A504T	ATP9A_uc010gih.1_Missense_Mutation_p.A368T|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	504	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						TGTACCAGGGCCACCTAAACA	0.567000											OREG0026043	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	44					0	0	0.361761	0	0
CECR2	27443	broad.mit.edu	37	22	18020229	18020229	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr22:18020229C>T	uc010gqw.1	+	13	1684	c.1558C>T	c.(1558-1560)CGG>TGG	p.R520W	CECR2_uc010gqv.1_Missense_Mutation_p.R379W|CECR2_uc002zml.2_Missense_Mutation_p.R379W	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	562					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		GGAGAAAAGACGGAGTCGGGC	0.527000													6	36					0	0	0.217242	0	0
ZBED4	9889	broad.mit.edu	37	22	50280050	50280050	+	Missense_Mutation	SNP	G	A	A	rs55681922		TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr22:50280050G>A	uc003bix.2	+	2	3210	c.2740G>A	c.(2740-2742)GTC>ATC	p.V914I		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	914						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		CGAGATGTCCGTCGAGTGTAA	0.582000													13	62					0	0	0.457914	0	0
ULK4	54986	broad.mit.edu	37	3	41795900	41795900	+	Silent	SNP	A	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr3:41795900A>G	uc003ckv.3	-	22	2475	c.2274T>C	c.(2272-2274)TAT>TAC	p.Y758Y		NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	758							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		AAATCAAAATATATAGAAGAA	0.383000													21	114					0	0	0.608945	0	0
OR5H14	403273	broad.mit.edu	37	3	97868884	97868884	+	Missense_Mutation	SNP	A	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr3:97868884A>G	uc003dsg.1	+	1	655	c.655A>G	c.(655-657)ATA>GTA	p.I219V		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	219	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TATATCTTACATATTTGTCCT	0.318000													23	34					0	0	0.639603	0	0
OR5K4	403278	broad.mit.edu	37	3	98073605	98073605	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr3:98073605G>A	uc011bgv.1	+	1	908	c.908G>A	c.(907-909)AGG>AAG	p.R303K		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AAAATTATGAGGAATTATAAC	0.249000													60	138					0	0	0.870114	0	0
WDR49	151790	broad.mit.edu	37	3	167246909	167246909	+	Silent	SNP	A	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr3:167246909A>G	uc003fev.1	-	10	1587	c.1281T>C	c.(1279-1281)TCT>TCC	p.S427S	WDR49_uc003feu.1_Silent_p.S252S|WDR49_uc011bpd.1_Silent_p.S491S|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	427	WD 7.									large_intestine(1)|ovary(1)|skin(1)	3						TCTTATCAGTAGACATAATAA	0.353000													11	44					0	0	0.361761	0	0
EHHADH	1962	broad.mit.edu	37	3	184910182	184910182	+	Silent	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr3:184910182G>A	uc003fpf.2	-	7	2031	c.2004C>T	c.(2002-2004)TCC>TCT	p.S668S	EHHADH_uc011brs.1_Silent_p.S572S	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	668						peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	ACCCAACTGTGGAAGCATAGA	0.473000													4	71					0	0	0.150653	0	0
PTPN13	5783	broad.mit.edu	37	4	87643480	87643480	+	Silent	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr4:87643480T>C	uc003hpz.2	+	10	1981	c.1501T>C	c.(1501-1503)TTG>CTG	p.L501L	PTPN13_uc003hpy.2_Silent_p.L501L|PTPN13_uc003hqa.2_Silent_p.L501L|PTPN13_uc003hqb.2_Silent_p.L501L	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	501	Potential.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		ACAGTCTCGGTTGAGCCTATA	0.443000													20	126					0	0	0.592651	0	0
NPY1R	4886	broad.mit.edu	37	4	164246627	164246627	+	Missense_Mutation	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr4:164246627T>C	uc003iqm.1	-	3	1249	c.983A>G	c.(982-984)CAG>CGG	p.Q328R	NPY1R_uc011cjj.1_Missense_Mutation_p.Q85R	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	328	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CAAGTCTCTCTGGAAGTTTTT	0.428000													25	95					0	0	0.654019	0	0
KIAA0947	23379	broad.mit.edu	37	5	5466481	5466481	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr5:5466481C>G	uc003jdm.3	+	14	6149	c.5927C>G	c.(5926-5928)TCA>TGA	p.S1976*		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1976										ovary(1)|central_nervous_system(1)	2						TCTATTCTCTCAGAACTAAAA	0.388000													7	58					0	0	0.248553	0	0
SPATA9	83890	broad.mit.edu	37	5	94994605	94994605	+	Missense_Mutation	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr5:94994605T>C	uc003klj.1	-	5	643	c.487A>G	c.(487-489)AAT>GAT	p.N163D	SPATA9_uc010jbh.1_RNA|SPATA9_uc003klh.1_RNA|SPATA9_uc003kli.1_RNA	NM_031952	NP_114158	Q9BWV2	SPAT9_HUMAN	spermatogenesis associated 9	163	Helical; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane					0		all_cancers(142;1.28e-06)|all_epithelial(76;1.55e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)|Colorectal(57;0.0846)|Breast(839;0.198)		all cancers(79;8.91e-16)		AGCACAGCATTAACACAGACT	0.348000													21	85					0	0	0.624587	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720793	140720793	+	Missense_Mutation	SNP	C	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr5:140720793C>G	uc003ljk.1	+	1	2440	c.2255C>G	c.(2254-2256)ACC>AGC	p.T752S	PCDHGA1_uc003lji.1_Intron|PCDHGA3_uc003ljm.1_5'Flank|PCDHGA3_uc010jfx.1_5'Flank|PCDHGA2_uc011dao.1_Missense_Mutation_p.T752S|PCDHGA3_uc011dap.1_5'Flank	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	752	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCCTGCAGACCTATTCCCAC	0.612000													20	131					0	0	0.740014	0	0
FBXO38	81545	broad.mit.edu	37	5	147803622	147803622	+	Silent	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr5:147803622T>C	uc003lpf.1	+	13	1800	c.1680T>C	c.(1678-1680)AAT>AAC	p.N560N	FBXO38_uc003lpg.1_Silent_p.N560N|FBXO38_uc003lph.2_Silent_p.N560N	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	560						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAGTGGAAATAATACTCCAG	0.413000													6	59					0	0	0.217242	0	0
IGF2R	3482	broad.mit.edu	37	6	160497010	160497010	+	Silent	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr6:160497010T>C	uc003qta.2	+	36	5446	c.5298T>C	c.(5296-5298)TGT>TGC	p.C1766C		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	1766	Lumenal (Potential).|12.				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		CGTTTCACTGTAAGAGAGGTG	0.468000													21	159					0	0	0.592651	0	0
ZPBP	11055	broad.mit.edu	37	7	50023024	50023024	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr7:50023024C>T	uc003tou.2	-	7	945	c.875G>A	c.(874-876)GGT>GAT	p.G292D	ZPBP_uc011kci.1_Missense_Mutation_p.G218D|ZPBP_uc010kyw.2_Missense_Mutation_p.G291D	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	292					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					TTGGAGAGTACCTTCAATATA	0.353000													3	47					0	0	0.115264	0	0
COBL	23242	broad.mit.edu	37	7	51096959	51096959	+	Missense_Mutation	SNP	G	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr7:51096959G>A	uc003tpr.3	-	10	2019	c.1834C>T	c.(1834-1836)CGT>TGT	p.R612C	COBL_uc003tps.2_Missense_Mutation_p.R669C|COBL_uc011kcl.1_Missense_Mutation_p.R612C|COBL_uc003tpp.3_Missense_Mutation_p.R398C|COBL_uc003tpq.3_Missense_Mutation_p.R553C|COBL_uc003tpo.3_Missense_Mutation_p.R154C	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	612										skin(3)|ovary(2)	5	Glioma(55;0.08)					AAGGCCACACGGATTCCTTTT	0.527000													20	100					0	0	0.592651	0	0
GPR85	54329	broad.mit.edu	37	7	112723671	112723671	+	Missense_Mutation	SNP	A	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr7:112723671A>G	uc010ljv.2	-	2	1623	c.1106T>C	c.(1105-1107)GTT>GCT	p.V369A	GPR85_uc003vgp.1_Missense_Mutation_p.V369A|GPR85_uc003vgq.2_Missense_Mutation_p.V369A|GPR85_uc010ljw.1_Missense_Mutation_p.V369A	NM_001146266	NP_001139738	P60893	GPR85_HUMAN	G protein-coupled receptor 85	369	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)	2						CCCTCATATAACACAGTAAGG	0.423000													25	167					0	0	0.654019	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147183114	147183114	+	Missense_Mutation	SNP	T	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr7:147183114T>G	uc003weu.1	+	11	2274	c.1758T>G	c.(1756-1758)AGT>AGG	p.S586R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	586	EGF-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CAGGATACAGTGGGGCCACCT	0.468000										HNSCC(39;0.1)			12	120					0	0	0.500413	0	0
SLC4A2	6522	broad.mit.edu	37	7	150767364	150767364	+	Missense_Mutation	SNP	G	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr7:150767364G>T	uc003wit.3	+	10	1636	c.1380G>T	c.(1378-1380)GAG>GAT	p.E460D	SLC4A2_uc011kve.1_Missense_Mutation_p.E451D|SLC4A2_uc003wiu.3_Missense_Mutation_p.E446D|SLC4A2_uc003wiv.3_5'Flank	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	460	Cytoplasmic (Potential).			LLGHHHGQGAESDPHVTEPLMGGVPE -> CWGITMVRGLR VTPTSPSLSWEVFLR (in Ref. 6; CAA27556).	bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGGGGCTGAGAGTGACCCCC	0.652000													10	83					9.70103e-10	1.06398e-09	0.361761	1	0
DLGAP2	9228	broad.mit.edu	37	8	1626399	1626399	+	Missense_Mutation	SNP	T	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr8:1626399T>A	uc003wpl.2	+	9	2165	c.2068T>A	c.(2068-2070)TCT>ACT	p.S690T	DLGAP2_uc003wpm.2_Missense_Mutation_p.S676T	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	769					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		TTTTAAACGTTCTAACAGCGT	0.552000													13	82					0	0	0.479597	0	0
LOC442421	442421	broad.mit.edu	37	9	66499867	66499867	+	Missense_Mutation	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr9:66499867T>C	uc004aee.1	+	1	677	c.677T>C	c.(676-678)CTG>CCG	p.L226P	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TTCACTTTGCTGGTGAGCCAG	0.567000													4	50					0	0	0.184627	0	0
C9orf79	286234	broad.mit.edu	37	9	90501369	90501369	+	Missense_Mutation	SNP	C	T	T			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr9:90501369C>T	uc004app.3	+	4	2002	c.1967C>T	c.(1966-1968)CCT>CTT	p.P656L	C9orf79_uc004apo.1_Missense_Mutation_p.P468L	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	656						integral to membrane				ovary(3)	3						CTGCTACAGCCTGATGGGGAA	0.622000													11	68					0	0	0.387290	0	0
CUL4B	8450	broad.mit.edu	37	X	119691896	119691896	+	Splice_Site	SNP	T	C	C			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chrX:119691896T>C	uc004esw.2	-	4	1048	c.611_splice	c.e4-1	p.D204_splice	CUL4B_uc004esv.2_Splice_Site_p.D186_splice	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1						cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TAGGCTTATCTAGATGATATG	0.313000													11	14					0	0	0.411799	0	0
LRRC37A4	55073	broad.mit.edu	37	17	43591984	43591985	+	RNA	INS	-	G	G			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr17:43591984_43591985insG	uc002ije.2	-	1		c.538_539insC								Homo sapiens cDNA FLJ34414 fis, clone HEART2003168, highly similar to Homo sapiens c114 SLIT-like testicular protein (LOC474170), mRNA.												0						GTGGGTCATGCGGAGCGAGTTT	0.411													7	90	---	---	---	---					
PTPRZ1	5803	broad.mit.edu	37	7	121659248	121659249	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CS-6670-01A-11D-1893-08	TCGA-CS-6670-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	44e94c3e-4910-440b-b21e-c0fcb9d9de16	b1a2bea4-c820-4301-ad17-0605363483bd	g.chr7:121659248_121659249insA	uc003vjy.2	+	13	5309_5310	c.4914_4915insA	c.(4912-4917)GTTATAfs	p.V1638fs	PTPRZ1_uc003vjz.2_Frame_Shift_Ins_p.V778fs|PTPRZ1_uc011knt.1_Frame_Shift_Ins_p.V228fs	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1638_1639	Helical; (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						AGAAGGCAGTTATACCCCTTGT	0.426													44	64	---	---	---	---					
