Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P9	11223	broad.mit.edu	37	1	17084292	17084293	+	Missense_Mutation	DNP	AG	GT	GT			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:17084292_17084293AG>GT	uc010ock.1	-	13	1724_1725	c.1724_1725CT>AC	c.(1723-1725)CCT>CAC	p.P575H	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.P175H	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TGGTCCCTGGAGGCACCACATA	0.589000													25	159					0	0	0.004672	0	0
MST1P9	11223	broad.mit.edu	37	1	17085078	17085078	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:17085078T>C	uc010ock.1	-	11	1397	c.1397A>G	c.(1396-1398)CAG>CGG	p.Q466R	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.Q40R	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						AAACTGCACCTGGTCTGTAGG	0.612000													4	31					0	0	0.008291	0	0
SCMH1	22955	broad.mit.edu	37	1	41579187	41579187	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:41579187C>T	uc001cgo.2	-	8	794	c.483G>A	c.(481-483)TCG>TCA	p.S161S	SCMH1_uc010ojr.1_Intron|SCMH1_uc001cgp.2_Silent_p.S100S|SCMH1_uc001cgr.2_Silent_p.S100S|SCMH1_uc001cgs.2_Silent_p.S171S|SCMH1_uc001cgt.2_Silent_p.S100S|SCMH1_uc001cgq.2_Silent_p.S114S|SCMH1_uc010ojs.1_RNA	NM_001031694	NP_001026864	Q96GD3	SCMH1_HUMAN	sex comb on midleg 1 isoform 1	161	MBT 2.				anatomical structure morphogenesis|gene silencing|multicellular organismal development|negative regulation of transcription, DNA-dependent		DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)|Breast(333;0.162)	Myeloproliferative disorder(586;0.0393)				TGTGGGAAGGCGATGGTGGCT	0.443000													13	20					0	0	0.016723	0	0
PTPRF	5792	broad.mit.edu	37	1	44079328	44079328	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:44079328C>T	uc001cjr.2	+	23	4353	c.4013C>T	c.(4012-4014)GCG>GTG	p.A1338V	PTPRF_uc001cjs.2_Missense_Mutation_p.A1329V|PTPRF_uc001cju.2_Missense_Mutation_p.A727V|PTPRF_uc009vwt.2_Missense_Mutation_p.A898V|PTPRF_uc001cjv.2_Missense_Mutation_p.A809V|PTPRF_uc001cjw.2_Missense_Mutation_p.A564V	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1338	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ACCGACCTGGCGGACAACATC	0.597000													19	42					0	0	0.006122	0	0
HRNR	388697	broad.mit.edu	37	1	152188371	152188371	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:152188371G>T	uc001ezt.1	-	3	5810	c.5734C>A	c.(5734-5736)CAA>AAA	p.Q1912K		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1912	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATCCGTGTTGTTCACCCCTA	0.557000													64	859					7.65386e-43	8.52582e-43	0.014410	1	0
CFHR5	81494	broad.mit.edu	37	1	196973949	196973949	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:196973949T>C	uc001gts.3	+	9	1617	c.1489T>C	c.(1489-1491)TGG>CGG	p.W497R		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	497	Sushi 8.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AAATAAACAGTGGTCAGAACC	0.378000													24	51					0	0	0.021523	0	0
TMEM9	252839	broad.mit.edu	37	1	201112999	201112999	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:201112999G>C	uc001gvw.2	-	5	670	c.348C>G	c.(346-348)ATC>ATG	p.I116M	TMEM9_uc001gvx.2_Missense_Mutation_p.I116M|TMEM9_uc001gvy.2_Missense_Mutation_p.I116M|TMEM9_uc010ppo.1_Missense_Mutation_p.I141M|TMEM9_uc001gvz.2_Missense_Mutation_p.I119M|TMEM9_uc001gwa.2_Missense_Mutation_p.I116M	NM_016456	NP_057540	Q9P0T7	TMEM9_HUMAN	transmembrane protein 9 precursor	116	Cytoplasmic (Potential).				transport	integral to membrane|late endosome membrane|lysosomal membrane					0		Breast(1374;0.000301)				CCGGCTTTCGGATCAGAGGGT	0.572000													4	42					0	0	0.014758	0	0
MDM4	4194	broad.mit.edu	37	1	204518349	204518349	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:204518349A>C	uc001hba.2	+	11	1174	c.1012A>C	c.(1012-1014)ACC>CCC	p.T338P	MDM4_uc001hbd.1_RNA|MDM4_uc010pqw.1_RNA|MDM4_uc010pqx.1_Missense_Mutation_p.T211P|MDM4_uc001hay.1_Missense_Mutation_p.T288P|MDM4_uc001hbb.2_Missense_Mutation_p.T211P|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_RNA|MDM4_uc009xbe.1_RNA	NM_002393	NP_002384	O15151	MDM4_HUMAN	mouse double minute 4 homolog	338					apoptosis|cell proliferation|cellular response to hypoxia|G0 to G1 transition|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of protein catabolic process|negative regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization	nucleus	enzyme binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(21;0.00146)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.112)|all_epithelial(62;0.118)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;3.15e-47)|all cancers(3;3.56e-32)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|Epithelial(59;0.143)|BRCA - Breast invasive adenocarcinoma(75;0.143)			TTCAAAGTTAACCCATTCTCT	0.428000			A		GBM|bladder|retinoblastoma								15	116					0	0	0.006122	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717481	222717481	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr1:222717481C>T	uc001hnh.1	-	2	430	c.372G>A	c.(370-372)ACG>ACA	p.T124T		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	124					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TCCGGAGAGGCGTCTGGGTGT	0.597000													34	140					0	0	0.021022	0	0
ITIH2	3698	broad.mit.edu	37	10	7780699	7780699	+	Silent	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr10:7780699G>A	uc001ijs.2	+	16	2235	c.2073G>A	c.(2071-2073)ACG>ACA	p.T691T		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	691					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						TAGAGTCCACGCCACCCCCAC	0.537000													12	38					0	0	0.010729	0	0
RAG1	5896	broad.mit.edu	37	11	36596675	36596675	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr11:36596675C>T	uc001mwu.3	+	2	1945	c.1821C>T	c.(1819-1821)GAC>GAT	p.D607D	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	607					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GAATGGGAGACGTGAGTGAGA	0.468000									Familial_Hemophagocytic_Lymphohistiocytosis				10	29					0	0	0.008291	0	0
ACTN3	89	broad.mit.edu	37	11	66326855	66326855	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr11:66326855C>T	uc001oio.1	+	12	1443	c.1425C>T	c.(1423-1425)CTC>CTT	p.L475L	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	475	Spectrin 2.				focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						CCCAGGAGCTCAAGTAggcgg	0.507000													4	6					0	0	0.009096	0	0
TRAPPC4	51399	broad.mit.edu	37	11	118890880	118890880	+	Missense_Mutation	SNP	A	C	C	rs78676902		TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr11:118890880A>C	uc010ryo.1	+	3	636	c.371A>C	c.(370-372)CAG>CCG	p.Q124P	RPS25_uc001pun.2_5'Flank|TRAPPC4_uc010ryn.1_Missense_Mutation_p.Q124P|TRAPPC4_uc010ryp.1_Intron|TRAPPC4_uc001pup.2_Intron|TRAPPC4_uc010ryq.1_Missense_Mutation_p.Q124P	NM_016146	NP_057230	Q9Y296	TPPC4_HUMAN	trafficking protein particle complex 4	124					dendrite development|ER to Golgi vesicle-mediated transport	cis-Golgi network|dendrite|endoplasmic reticulum|Golgi stack|synaptic vesicle	protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_neural(223;0.224)|all_hematologic(192;0.243)		BRCA - Breast invasive adenocarcinoma(274;7.58e-05)		ATCGGCTCCCAGCTGTCTCCT	0.498000													6	59					0	0	0.006214	0	0
SORL1	6653	broad.mit.edu	37	11	121421301	121421301	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr11:121421301A>G	uc001pxx.2	+	16	2268	c.2188A>G	c.(2188-2190)AAG>GAG	p.K730E		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	730	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CAGCTACCGGAAGATTTCTGG	0.557000													7	59					0	0	0.029380	0	0
WNK1	65125	broad.mit.edu	37	12	989896	989896	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr12:989896C>T	uc001qio.3	+	12	3349	c.2842C>T	c.(2842-2844)CCT>TCT	p.P948S	WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	948					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GGGCTTCCCACCTCGACTGCC	0.468000													16	466					0	0	0.033300	0	0
PRB1	5542	broad.mit.edu	37	12	11506690	11506691	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr12:11506690_11506691CC>TT	uc001qzw.1	-	3	383_384	c.346_347GG>AA	c.(346-348)GGA>AAA	p.G116K	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	177	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGAGGT	0.609000													76	590					0	0	0.004672	0	0
KRT73	319101	broad.mit.edu	37	12	53008406	53008406	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr12:53008406G>A	uc001sas.2	-	4	811	c.776C>T	c.(775-777)GCC>GTC	p.A259V		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	259	Coil 1B.|Rod.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCCATCCAGGGCATCCACCTT	0.542000													5	42					0	0	0.021553	0	0
KCNMB4	27345	broad.mit.edu	37	12	70824288	70824288	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr12:70824288G>A	uc001svx.2	+	3	941	c.488G>A	c.(487-489)CGC>CAC	p.R163H	uc001svy.1_5'Flank	NM_014505	NP_055320	Q86W47	KCMB4_HUMAN	calcium-activated potassium channel beta 4	163	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of neurotransmitter secretion|regulation of vasoconstriction|synaptic transmission	voltage-gated potassium channel complex	calcium-activated potassium channel activity|protein binding				0	Renal(347;0.236)		Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			CTTCTGCATCGCACTCATGAT	0.488000													16	128					0	0	0.007413	0	0
FGD6	55785	broad.mit.edu	37	12	95535225	95535225	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr12:95535225G>A	uc001tdp.3	-	6	3000	c.2776C>T	c.(2776-2778)CCT>TCT	p.P926S	FGD6_uc009zsx.2_Missense_Mutation_p.P59S	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	926	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						TACAGCTGAGGCAAGTAGTAT	0.448000													4	76					0	0	0.014758	0	0
C12orf51	283450	broad.mit.edu	37	12	112617095	112617095	+	Silent	SNP	G	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr12:112617095G>C	uc009zwc.2	-	56	9846	c.9828C>G	c.(9826-9828)GTC>GTG	p.V3276V		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						AAATGTCAGAGACTCTGATGG	0.542000													6	13					0	0	0.021553	0	0
SOHLH2	54937	broad.mit.edu	37	13	36776075	36776075	+	Silent	SNP	A	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr13:36776075A>G	uc001uvj.2	-	2	293	c.204T>C	c.(202-204)GTT>GTC	p.V68V	SOHLH2_uc010tei.1_Silent_p.V145V	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	68					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		CCTTCAAGAGAACCATGTTGA	0.423000													21	60					0	0	0.012319	0	0
FNDC3A	22862	broad.mit.edu	37	13	49710555	49710555	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr13:49710555G>A	uc001vcm.2	+	6	883	c.578G>A	c.(577-579)CGC>CAC	p.R193H	FNDC3A_uc001vcl.1_Missense_Mutation_p.R193H|FNDC3A_uc001vcn.2_Missense_Mutation_p.R193H|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcp.1_Missense_Mutation_p.R137H|FNDC3A_uc001vcq.2_Missense_Mutation_p.R137H	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	193						Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		TTGAAGGATCGCCAAGGAACA	0.388000													27	25					0	0	0.021523	0	0
NGDN	25983	broad.mit.edu	37	14	23940135	23940135	+	Silent	SNP	A	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr14:23940135A>G	uc001wjy.2	+	3	120	c.93A>G	c.(91-93)CAA>CAG	p.Q31Q	NGDN_uc001wjz.2_Silent_p.Q31Q	NM_001042635	NP_001036100	Q8NEJ9	NGDN_HUMAN	neuroguidin isoform 1	31	Potential.				regulation of translation	axon|cytoplasm|dendrite|filopodium|nucleus					0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		TAACTGCACAAGTGAAATCAC	0.368000													5	94					0	0	0.029380	0	0
CTAGE5	4253	broad.mit.edu	37	14	39784908	39784908	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr14:39784908G>A	uc001wvg.3	+	16	1714	c.1378G>A	c.(1378-1380)GCA>ACA	p.A460T	CTAGE5_uc010tqe.1_Missense_Mutation_p.A422T|CTAGE5_uc001wuz.3_Missense_Mutation_p.A448T|CTAGE5_uc001wuy.3_Missense_Mutation_p.A380T|CTAGE5_uc001wvb.3_Missense_Mutation_p.A431T|CTAGE5_uc001wvc.3_Missense_Mutation_p.A405T|CTAGE5_uc001wva.3_Missense_Mutation_p.A431T|CTAGE5_uc001wvh.3_Missense_Mutation_p.A460T|CTAGE5_uc001wvf.3_Missense_Mutation_p.A385T|CTAGE5_uc001wvi.3_Missense_Mutation_p.A465T|CTAGE5_uc010amz.2_Missense_Mutation_p.A76T|CTAGE5_uc001wvj.3_Missense_Mutation_p.A431T	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	460	Potential.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		TGAGAAAAAAGCACATGATAA	0.254000													21	76					0	0	0.021523	0	0
CCDC88C	440193	broad.mit.edu	37	14	91755473	91755473	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr14:91755473C>T	uc010aty.2	-	25	4516	c.4417G>A	c.(4417-4419)GCC>ACC	p.A1473T		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1473					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CCGTTGTGGGCGTCGCGCTCT	0.701000													6	18					0	0	0.021553	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40241413	40241413	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr15:40241413C>T	uc001zkm.1	+	4	507	c.457C>T	c.(457-459)CGG>TGG	p.R153W	EIF2AK4_uc001zkl.2_Missense_Mutation_p.R153W	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	153					translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		GCTGGAAAGGCGGGCTCAGGA	0.537000													47	73					0	0	0.014410	0	0
BUB1B	701	broad.mit.edu	37	15	40509802	40509802	+	Silent	SNP	C	T	T	rs139066741	by1000genomes	TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr15:40509802C>T	uc001zkx.3	+	21	2996	c.2784C>T	c.(2782-2784)AGC>AGT	p.S928S	PAK6_uc010bbl.2_5'UTR|PAK6_uc010bbm.2_5'UTR	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	928	Protein kinase.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		TTACCCTCAGCGGCTTTCGGA	0.443000			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				92	260					0	0	0.014410	0	0
NLRP1	22861	broad.mit.edu	37	17	5437261	5437261	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:5437261A>T	uc002gci.2	-	9	3563	c.3008T>A	c.(3007-3009)ATG>AAG	p.M1003K	NLRP1_uc002gcg.1_Missense_Mutation_p.M1003K|NLRP1_uc002gck.2_Missense_Mutation_p.M1003K|NLRP1_uc002gcj.2_Missense_Mutation_p.M973K|NLRP1_uc002gcl.2_Missense_Mutation_p.M973K|NLRP1_uc002gch.3_Missense_Mutation_p.M1003K|NLRP1_uc010clh.2_Missense_Mutation_p.M1003K	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1003					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GCTATTACTCATCTCTCCCGT	0.537000													7	325					0	0	0.003080	0	0
TP53	7157	broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	A	A	rs121913343		TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:7577121G>A	uc002gim.2	-	8	1011	c.817C>T	c.(817-819)CGT>TGT	p.R273C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141C|TP53_uc010cng.1_Missense_Mutation_p.R141C|TP53_uc002gii.1_Missense_Mutation_p.R141C|TP53_uc010cnh.1_Missense_Mutation_p.R273C|TP53_uc010cni.1_Missense_Mutation_p.R273C|TP53_uc002gij.2_Missense_Mutation_p.R273C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(467)|p.R273C(396)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.F270fs*72(1)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCACAAACACGCACCTCAAAG	0.542000	R273C(SH10TC_STOMACH)|R273C(SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(8MGBA_CENTRAL_NERVOUS_SYSTEM)|R273C(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273C(BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(SW1710_URINARY_TRACT)|R273C(RH30_SOFT_TISSUE)|R273C(PANC0213_PANCREAS)|R273C(SJRH30_SOFT_TISSUE)|R273C(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(RDES_BONE)|R273C(TT2609C02_THYROID)|R273C(MFE319_ENDOMETRIUM)|R273C(RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(EFO27_OVARY)|R273C(NCIH1048_LUNG)|R273C(KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			21	3					0	0	0.012319	0	0
C17orf68	80169	broad.mit.edu	37	17	8132163	8132163	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:8132163T>C	uc002gkq.3	-	21	3328	c.3269A>G	c.(3268-3270)AAT>AGT	p.N1090S	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	1090					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						CACATGGTGATTCCTACAGGT	0.567000													4	18					0	0	0.009096	0	0
PIGS	94005	broad.mit.edu	37	17	26890906	26890906	+	Silent	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:26890906G>A	uc002hbo.2	-	4	679	c.306C>T	c.(304-306)TGC>TGT	p.C102C	PIGS_uc002hbn.2_Silent_p.C94C|PIGS_uc010wap.1_Silent_p.C41C	NM_033198	NP_149975	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	102	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(2)|urinary_tract(1)|kidney(1)	4	Lung NSC(42;0.00431)					TCTGGAAACGGCATTTGATTT	0.512000													4	109					0	0	0.009096	0	0
PSMD3	5709	broad.mit.edu	37	17	38151212	38151212	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:38151212C>G	uc002htn.1	+	7	1151	c.987C>G	c.(985-987)CAC>CAG	p.H329Q	PSMD3_uc010wen.1_RNA|PSMD3_uc010weo.1_Missense_Mutation_p.H230Q	NM_002809	NP_002800	O43242	PSMD3_HUMAN	proteasome 26S non-ATPase subunit 3	329					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	enzyme regulator activity|protein binding			ovary(1)|pancreas(1)	2	Colorectal(19;0.000442)					TCCAGGTGCACAAGCTTCTCA	0.572000													19	40					0	0	0.006122	0	0
CCR7	1236	broad.mit.edu	37	17	38711759	38711759	+	Silent	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:38711759G>A	uc002huw.2	-	3	435	c.372C>T	c.(370-372)TTC>TTT	p.F124F		NM_001838	NP_001829	P32248	CCR7_HUMAN	chemokine (C-C motif) receptor 7 precursor	124	Extracellular (Potential).				cell maturation|immunological synapse formation|inflammatory response|interleukin-12 secretion|lymphocyte migration into lymph node|positive regulation of dendritic cell antigen processing and presentation|positive regulation of glycoprotein biosynthetic process|positive regulation of humoral immune response|positive regulation of hypersensitivity|positive regulation of interleukin-12 production|positive regulation of neutrophil chemotaxis|regulation of interferon-gamma production|regulation of interleukin-1 beta secretion|T cell costimulation	integral to membrane|intracellular	C-C chemokine receptor activity|chemokine (C-C motif) ligand 19 binding|chemokine (C-C motif) ligand 21 binding			breast(1)	1		Breast(137;0.000496)				AGTGGACACCGAAGACCCAGG	0.552000													19	20					0	0	0.008871	0	0
HDAC5	10014	broad.mit.edu	37	17	42169818	42169818	+	Missense_Mutation	SNP	G	A	A	rs138137922		TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:42169818G>A	uc002ifd.1	-	8	1061	c.850C>T	c.(850-852)CGC>TGC	p.R284C	HDAC5_uc002ife.1_Missense_Mutation_p.R284C|HDAC5_uc002iff.1_Missense_Mutation_p.R285C|HDAC5_uc010czp.1_Missense_Mutation_p.R284C|HDAC5_uc002ifh.2_Missense_Mutation_p.R284C	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	284					B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		CCATCCTTGCGACGCAGGAGG	0.537000													9	12					0	0	0.006214	0	0
FBF1	85302	broad.mit.edu	37	17	73924171	73924171	+	Missense_Mutation	SNP	T	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:73924171T>G	uc002jqc.2	-	7	615	c.341A>C	c.(340-342)CAC>CCC	p.H114P	FBF1_uc002jqa.1_RNA|FBF1_uc010wsp.1_Missense_Mutation_p.H104P|FBF1_uc002jqd.1_Missense_Mutation_p.H114P	NM_001080542	NP_001074011	Q8TES7	FBF1_HUMAN	Fas (TNFRSF6) binding factor 1	114											0						AGGCTTGGGGTGGTTGGGCAG	0.537000													6	20					0	0	0.020292	0	0
KLHL14	57565	broad.mit.edu	37	18	30349844	30349844	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr18:30349844C>T	uc002kxm.1	-	2	1099	c.711G>A	c.(709-711)GCG>GCA	p.A237A		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	237	BACK.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						TCTGGAAGAGCGCCAGCTCCG	0.657000													10	28					0	0	0.006214	0	0
MBP	4155	broad.mit.edu	37	18	74729068	74729068	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr18:74729068G>A	uc010xfd.1	-	4	560	c.296C>T	c.(295-297)GCC>GTC	p.A99V	MBP_uc002lml.2_5'Flank|MBP_uc002lmn.2_5'Flank|MBP_uc002lmp.2_5'Flank|MBP_uc010xfe.1_5'UTR|MBP_uc002lmr.2_Missense_Mutation_p.A99V	NM_001025101	NP_001020272	P02686	MBP_HUMAN	Golli-mbp isoform 1	99					central nervous system development|immune response|synaptic transmission	plasma membrane	structural constituent of myelin sheath			haematopoietic_and_lymphoid_tissue(1)	1		Prostate(75;0.0865)|Esophageal squamous(42;0.129)|Melanoma(33;0.211)		OV - Ovarian serous cystadenocarcinoma(15;1.79e-06)|BRCA - Breast invasive adenocarcinoma(31;0.113)|READ - Rectum adenocarcinoma(1;0.188)		CCTCCCCGGGGCATCTCGGGA	0.632000													3	41					0	0	0.004672	0	0
EEF2	1938	broad.mit.edu	37	19	3977234	3977234	+	Silent	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr19:3977234G>A	uc002lze.2	-	14	2445	c.2362C>T	c.(2362-2364)CTG>TTG	p.L788L		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	788						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGACGGGCAGATAGGCCTTG	0.617000													5	10					0	0	0.014758	0	0
FCGBP	8857	broad.mit.edu	37	19	40408740	40408740	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr19:40408740C>T	uc002omp.3	-	8	4107	c.4099G>A	c.(4099-4101)GCC>ACC	p.A1367T		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1367	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGGTCGTAGGCCACACGCAGG	0.587000													16	30					0	0	0.028581	0	0
FOSB	2354	broad.mit.edu	37	19	45974181	45974181	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr19:45974181C>T	uc002pbx.3	+	2	1013	c.421C>T	c.(421-423)CGG>TGG	p.R141W	ERCC1_uc002pbu.1_Intron|FOSB_uc002pbw.2_Missense_Mutation_p.R141W|FOSB_uc010eke.2_Missense_Mutation_p.R102W|FOSB_uc002pby.3_Missense_Mutation_p.R141W|FOSB_uc010eka.1_Missense_Mutation_p.R102W|FOSB_uc010ekb.1_Missense_Mutation_p.R141W|FOSB_uc010ekc.1_Intron|FOSB_uc010ekf.2_Missense_Mutation_p.R102W|FOSB_uc010ekd.1_Missense_Mutation_p.R141W|FOSB_uc010ekg.2_Intron|FOSB_uc002pca.3_Missense_Mutation_p.R92W	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	141					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		AGCCCGAGCCCGGCCTAGGAG	0.632000													14	26					0	0	0.033300	0	0
ZNF814	730051	broad.mit.edu	37	19	58385268	58385268	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr19:58385268C>T	uc002qqo.2	-	3	1762	c.1490G>A	c.(1489-1491)TGT>TAT	p.C497Y	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	497	C2H2-type 11.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						AGATTTCCCACATTCTCCACA	0.448000													4	27					0	0	0.009096	0	0
YSK4	80122	broad.mit.edu	37	2	135744754	135744754	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr2:135744754G>A	uc002tue.1	-	7	1719	c.1688C>T	c.(1687-1689)ACC>ATC	p.T563I	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.T450I|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.T291I|YSK4_uc002tui.3_Missense_Mutation_p.T580I	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	563							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TTTATGCATGGTAGGCTTAAT	0.423000													16	97					0	0	0.024245	0	0
IFIH1	64135	broad.mit.edu	37	2	163134056	163134056	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr2:163134056A>C	uc002uce.2	-	10	2135	c.1913T>G	c.(1912-1914)TTT>TGT	p.F638C		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	638					detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						TATGACTGCAAACTTCTTATC	0.229000													17	18					0	0	0.033300	0	0
TTN	7273	broad.mit.edu	37	2	179470362	179470362	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr2:179470362C>T	uc010zfg.1	-	228	46180	c.45956G>A	c.(45955-45957)CGC>CAC	p.R15319H	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R9014H|TTN_uc010zfi.1_Missense_Mutation_p.R8947H|TTN_uc010zfj.1_Missense_Mutation_p.R8822H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16246							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCATTACTGCGGGGCTCTTT	0.473000													5	87					0	0	0.014758	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								22	47					0	0	0.016522	0	0
PRND	23627	broad.mit.edu	37	20	4705632	4705632	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr20:4705632C>T	uc002wkz.2	+	2	506	c.435C>T	c.(433-435)TGC>TGT	p.C145C		NM_012409	NP_036541	Q9UKY0	PRND_HUMAN	prion-like protein doppel preproprotein	145	Globular.				protein homooligomerization	anchored to membrane|plasma membrane					0						TCAAGCATTGCGAGTTTTGGT	0.602000													8	33					0	0	0.003080	0	0
PLCG1	5335	broad.mit.edu	37	20	39795459	39795459	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr20:39795459A>G	uc002xjp.1	+	19	2382	c.2261A>G	c.(2260-2262)TAT>TGT	p.Y754C	PLCG1_uc002xjo.1_Missense_Mutation_p.Y754C|PLCG1_uc010zwe.1_Missense_Mutation_p.Y380C|PLCG1_uc010ggf.2_Missense_Mutation_p.Y104C	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	754	SH2 2.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				AAGCTGCGCTATCCCATCAAC	0.562000													31	50					0	0	0.013726	0	0
FLNB	2317	broad.mit.edu	37	3	58094210	58094210	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr3:58094210A>G	uc003djj.2	+	13	2132	c.1967A>G	c.(1966-1968)GAG>GGG	p.E656G	FLNB_uc010hne.2_Missense_Mutation_p.E656G|FLNB_uc003djk.2_Missense_Mutation_p.E656G|FLNB_uc010hnf.2_Missense_Mutation_p.E656G|FLNB_uc003djl.2_Missense_Mutation_p.E487G|FLNB_uc003djm.2_Missense_Mutation_p.E487G	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	656	Filamin 5.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCAGGTTTGGAGAAATCTGGA	0.448000													12	19					0	0	0.013537	0	0
LEKR1	389170	broad.mit.edu	37	3	156763496	156763496	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr3:156763496A>G	uc003fba.1	+	14	2459	c.1124A>G	c.(1123-1125)CAG>CGG	p.Q375R		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	Error:Variant_position_missing_in_D3DNK7_after_alignment											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			GAGACTAGACAGAGACTGGCT	0.547000													30	53					0	0	0.009535	0	0
IGF2BP2	10644	broad.mit.edu	37	3	185393095	185393095	+	Silent	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr3:185393095G>A	uc003fpo.2	-	9	1139	c.1060C>T	c.(1060-1062)CTG>TTG	p.L354L	IGF2BP2_uc010hyi.2_Silent_p.L297L|IGF2BP2_uc010hyj.2_Silent_p.L291L|IGF2BP2_uc010hyk.2_Silent_p.L218L|IGF2BP2_uc010hyl.2_Silent_p.L291L|IGF2BP2_uc003fpp.2_Silent_p.L354L|IGF2BP2_uc003fpq.2_Silent_p.L359L	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	354					anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			TTAACAGCCAGCATATCATTT	0.463000													15	123					0	0	0.028581	0	0
ANK2	287	broad.mit.edu	37	4	114280346	114280346	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr4:114280346C>T	uc003ibe.3	+	38	10672	c.10572C>T	c.(10570-10572)ACC>ACT	p.T3524T	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Silent_p.T826T|ANK2_uc011cgb.1_Silent_p.T3539T	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3491					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CTGTTGAGACCGAGCACTCAG	0.473000													16	66					0	0	0.028581	0	0
SEC24D	9871	broad.mit.edu	37	4	119649799	119649799	+	Silent	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr4:119649799G>A	uc003ici.3	-	22	3147	c.2875C>T	c.(2875-2877)CTG>TTG	p.L959L	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Silent_p.L960L	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	959					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						ACTTCAGGCAGCAATGTCTTA	0.303000													9	44					0	0	0.006214	0	0
GFM2	84340	broad.mit.edu	37	5	74034187	74034187	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr5:74034187A>C	uc003kdh.1	-	14	1580	c.1276T>G	c.(1276-1278)TCA>GCA	p.S426A	GFM2_uc003kdi.1_Missense_Mutation_p.S379A|GFM2_uc010izj.1_Missense_Mutation_p.S458A|GFM2_uc010izk.1_RNA|GFM2_uc003kdj.1_Missense_Mutation_p.S426A	NM_032380	NP_115756	Q969S9	RRF2M_HUMAN	mitochondrial elongation factor G2 isoform 1	426					mitochondrial translation|ribosome disassembly	mitochondrion	GTP binding|GTPase activity				0		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Breast(144;0.231)		OV - Ovarian serous cystadenocarcinoma(47;1.86e-56)		GCAGTCAATGAAGGGATTTCT	0.333000													74	74					0	0	0.014410	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308171	140308171	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr5:140308171T>C	uc003lih.2	+	1	1870	c.1694T>C	c.(1693-1695)GTC>GCC	p.V565A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.V565A	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	565	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATGGTTCTGTCCCAGTGGAA	0.473000													7	97					0	0	0.003080	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553676	140553676	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr5:140553676C>T	uc003lit.2	+	1	1434	c.1260C>T	c.(1258-1260)ACC>ACT	p.T420T		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	420	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAACATCACCATCACCGTCA	0.512000													3	47					0	0	0.021553	0	0
PCDH12	51294	broad.mit.edu	37	5	141335138	141335138	+	Missense_Mutation	SNP	C	T	T	rs139572685		TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr5:141335138C>T	uc003llx.2	-	1	3490	c.2279G>A	c.(2278-2280)CGC>CAC	p.R760H		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	760	Cytoplasmic (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCTGCTGGCGGTAGGTGGA	0.587000													3	41					0	0	0.009096	0	0
STK10	6793	broad.mit.edu	37	5	171520604	171520604	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr5:171520604C>T	uc003mbo.1	-	9	1666	c.1366G>A	c.(1366-1368)GCC>ACC	p.A456T		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	456							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GTCTCCAGGGCGCTGCTGTTG	0.647000													8	46					0	0	0.006214	0	0
CLDN4	1364	broad.mit.edu	37	7	73245693	73245693	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr7:73245693C>T	uc003tzi.3	+	1	501	c.162C>T	c.(160-162)TGC>TGT	p.C54C	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	54	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				GGATGAACTGCGTGGTGCAGA	0.642000													3	40					0	0	0.009096	0	0
PCLO	27445	broad.mit.edu	37	7	82579784	82579784	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr7:82579784A>G	uc003uhx.2	-	6	10409	c.10120T>C	c.(10120-10122)TAC>CAC	p.Y3374H	PCLO_uc003uhv.2_Missense_Mutation_p.Y3374H|PCLO_uc010lec.2_Missense_Mutation_p.Y339H	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3305					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGAACGGTGTACCATCCTTGG	0.463000													3	46					0	0	0.004672	0	0
LMTK2	22853	broad.mit.edu	37	7	97823142	97823142	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr7:97823142G>A	uc003upd.1	+	11	3658	c.3365G>A	c.(3364-3366)GGA>GAA	p.G1122E		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1122					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GAGGTCCCGGGAACCTCCCCA	0.607000													28	37					0	0	0.030593	0	0
COG5	10466	broad.mit.edu	37	7	107204267	107204267	+	Silent	SNP	G	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr7:107204267G>C	uc003ved.2	-	1	693	c.168C>G	c.(166-168)GTC>GTG	p.V56V	COG5_uc003vec.2_Silent_p.V56V|COG5_uc003vee.2_Silent_p.V56V|DUS4L_uc003veg.2_5'Flank|DUS4L_uc003veh.2_5'Flank|DUS4L_uc011klw.1_5'Flank|DUS4L_uc011klx.1_5'Flank	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	56					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						GAAGTTCCCGGACTGTAGCTG	0.667000													10	20					0	0	0.008291	0	0
PLXNA4	91584	broad.mit.edu	37	7	131848964	131848964	+	Silent	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr7:131848964G>A	uc003vra.3	-	24	4666	c.4437C>T	c.(4435-4437)GGC>GGT	p.G1479G		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1479	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AGCGGGCCTCGCCCGTGATGG	0.592000													7	29					0	0	0.003080	0	0
SHH	6469	broad.mit.edu	37	7	155599004	155599004	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr7:155599004C>T	uc003wmk.1	-	2	699	c.548G>A	c.(547-549)TGC>TAC	p.C183Y	SHH_uc003wmh.1_RNA|SHH_uc003wmi.1_Missense_Mutation_p.C96Y|SHH_uc003wmj.1_Missense_Mutation_p.C96Y	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	183			C -> Y (in HPE3).|C -> R (in HPE3).|C -> F (in HPE3).		androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTTCACCGAGCAGTGGATATG	0.622000													23	75					0	0	0.018920	0	0
VPS13B	157680	broad.mit.edu	37	8	100396486	100396486	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr8:100396486A>C	uc003yiv.2	+	20	2986	c.2875A>C	c.(2875-2877)ATC>CTC	p.I959L	VPS13B_uc003yiw.2_Missense_Mutation_p.I959L|VPS13B_uc003yiu.1_Missense_Mutation_p.I959L|VPS13B_uc003yix.1_Missense_Mutation_p.I430L	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	959					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TATTGACCCAATCTTATATAC	0.303000													4	86					0	0	0.009096	0	0
EPPK1	83481	broad.mit.edu	37	8	144942235	144942235	+	Silent	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr8:144942235G>A	uc003zaa.1	-	1	5200	c.5187C>T	c.(5185-5187)TTC>TTT	p.F1729F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1729	Plectin 30.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGTTGGGGTCGAAGAAGCCCT	0.622000													33	47					0	0	0.010818	0	0
SVEP1	79987	broad.mit.edu	37	9	113139596	113139596	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr9:113139596C>A	uc010mtz.2	-	45	10796	c.10459G>T	c.(10459-10461)GCT>TCT	p.A3487S	SVEP1_uc010mty.2_Missense_Mutation_p.A1413S	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3487					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CAGGAACAAGCATTTGGGCGT	0.507000													18	37					2.94398e-08	3.1984e-08	0.007413	1	0
ASB9	140462	broad.mit.edu	37	X	15272893	15272893	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chrX:15272893G>A	uc004cwl.2	-	3	495	c.248C>T	c.(247-249)TCT>TTT	p.S83F	ASB9_uc004cwk.2_Missense_Mutation_p.S83F|ASB9_uc004cwm.2_Missense_Mutation_p.S83F|ASB9_uc010ner.2_Missense_Mutation_p.S83F|ASB9_uc004cwn.2_Missense_Mutation_p.S83F	NM_001031739	NP_001026909	Q96DX5	ASB9_HUMAN	ankyrin repeat and SOCS box-containing 9 isoform	83	ANK 2.				intracellular signal transduction						0	Hepatocellular(33;0.183)					CTTCACACAAGAGAGATGACC	0.443000													25	194					0	0	0.021523	0	0
MAGEB10	139422	broad.mit.edu	37	X	27840125	27840125	+	Silent	SNP	C	T	T			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chrX:27840125C>T	uc004dbw.2	+	3	929	c.702C>T	c.(700-702)GAC>GAT	p.D234D		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	234	MAGE.									lung(1)|breast(1)|central_nervous_system(1)	3						GGTTATATGACGGAATTGAGC	0.468000													8	40					0	0	0.003080	0	0
ATRX	546	broad.mit.edu	37	X	76909629	76909629	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chrX:76909629G>A	uc004ecp.3	-	14	4508	c.4276C>T	c.(4276-4278)CGA>TGA	p.R1426*	ATRX_uc004ecq.3_Nonsense_Mutation_p.R1388*|ATRX_uc004eco.3_Nonsense_Mutation_p.R1211*|ATRX_uc004ecr.2_Nonsense_Mutation_p.R1358*	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1426					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTAATACGTCGCCTTTTCTTT	0.328000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						38	92					0	0	0.033182	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135825810	135825810	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chrX:135825810C>A	uc004fab.2	-	5	1057	c.595G>T	c.(595-597)GAA>TAA	p.E199*	ARHGEF6_uc011mwd.1_Nonsense_Mutation_p.E45*|ARHGEF6_uc011mwe.1_Nonsense_Mutation_p.E45*	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	199	SH3.			E -> G (in Ref. 2; CAD97632).	apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					AATGTGCCTTCCCACCAGCCT	0.408000													13	207					0.00136819	0.00146831	0.013537	1	0
MAGEC3	139081	broad.mit.edu	37	X	140969496	140969496	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chrX:140969496C>A	uc011mwp.1	+	4	823	c.823C>A	c.(823-825)CTC>ATC	p.L275I		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	275	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGAACCGCCTCCTGATTCT	0.502000													31	203					2.85442e-18	3.13986e-18	0.010818	1	0
ARID2	196528	broad.mit.edu	37	12	46245951	46245960	+	Frame_Shift_Del	DEL	ATCAAAAGTG	-	-			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr12:46245951_46245960delATCAAAAGTG	uc001ros.1	+	15	4045_4054	c.4045_4054delATCAAAAGTG	c.(4045-4056)ATCAAAAGTGATfs	p.I1349fs	ARID2_uc001ror.2_Frame_Shift_Del_p.I1349fs|ARID2_uc009zkg.1_Frame_Shift_Del_p.I805fs|ARID2_uc009zkh.1_Frame_Shift_Del_p.I976fs|ARID2_uc001rou.1_Frame_Shift_Del_p.I683fs	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1349_1352					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		CATGCAAGATATCAAAAGTGATTTGAGAAA	0.357													19	42	---	---	---	---					
SEZ6	124925	broad.mit.edu	37	17	27296913	27296914	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr17:27296913_27296914insC	uc002hdp.2	-	4	1109_1110	c.915_916insG	c.(913-918)GGGCCTfs	p.G305fs	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Frame_Shift_Ins_p.G305fs|SEZ6_uc002hdq.1_Frame_Shift_Ins_p.G180fs|SEZ6_uc010crz.1_Frame_Shift_Ins_p.G305fs	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	305_306	Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			AGTGGGTCAGGCCCCCCCAGGC	0.614													8	31	---	---	---	---					
REXO1L1	254958	broad.mit.edu	37	8	86574438	86574439	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr8:86574438_86574439delAC	uc011lfw.1	-	1	830_831	c.784_785delGT	c.(784-786)GTAfs	p.V262fs		NM_172239	NP_758439	Q8IX06	GOR_HUMAN	exonuclease GOR	430	GOR1-125 epitope.					cytoplasm|nucleus	exonuclease activity|nucleic acid binding				0						CTGGTCGCGTACACAGCGGCCC	0.658													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68414062	68414063	+	RNA	INS	-	CGC	CGC	rs74734751		TCGA-DU-5855-01A-11D-1705-08	TCGA-DU-5855-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	d77baeae-05d1-4edc-ba95-7292fcc375fb	603f649f-20bf-409c-88f4-ba1b89933074	g.chr9:68414062_68414063insCGC	uc004aex.2	+	1		c.617_618insCGC								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		CCTTCTGCCTGTGCAGCCTGGC	0.658													3	5	---	---	---	---					
