Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF4	400735	broad.mit.edu	37	1	12941802	12941802	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr1:12941802C>T	uc001aun.2	-	3	819	c.748G>A	c.(748-750)GTT>ATT	p.V250I		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	250	LRR 1.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCTGGGGAAACGTAGCGAGAG	0.488000													78	159					0	0	0.048971	0	0
HIST2H2BE	8349	broad.mit.edu	37	1	149858178	149858178	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr1:149858178C>T	uc001etc.2	-	1	55	c.13G>A	c.(13-15)GCA>ACA	p.A5T	HIST2H2AC_uc001etd.2_5'Flank	NM_003528	NP_003519	Q16778	H2B2E_HUMAN	histone cluster 2, H2be	5				A -> S (in Ref. 7; AAH98112/AAH98289).	defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GCGGATTTTGCCGGTTCAGGC	0.507000													3	45					0	0	0.004672	0	0
TCHH	7062	broad.mit.edu	37	1	152082385	152082385	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr1:152082385C>T	uc001ezp.2	-	2	3308	c.3308G>A	c.(3307-3309)CGC>CAC	p.R1103H	TCHH_uc009wne.1_Missense_Mutation_p.R1103H	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1103	10 X 30 AA tandem repeats.|4-7.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCGCTCCTGGCGCCTTCTCTT	0.174000													19	42					0	0	0.055883	0	0
CD1E	913	broad.mit.edu	37	1	158324220	158324220	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr1:158324220C>T	uc001fse.2	+	2	351	c.112C>T	c.(112-114)CGC>TGC	p.R38C	CD1E_uc010pid.1_Missense_Mutation_p.R36C|CD1E_uc010pie.1_Intron|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.R38C|CD1E_uc001fsk.2_Missense_Mutation_p.R38C|CD1E_uc001fsj.2_Missense_Mutation_p.R38C|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.R38C|CD1E_uc001fry.2_Missense_Mutation_p.R38C|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.R38C|CD1E_uc009wsv.2_Intron|CD1E_uc001frz.2_Missense_Mutation_p.R38C|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	38					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GCTGTCCTTCCGCATGCTCCA	0.542000													27	86					0	0	0.108266	0	0
RYR2	6262	broad.mit.edu	37	1	237777663	237777663	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr1:237777663A>T	uc001hyl.1	+	37	5355	c.5235A>T	c.(5233-5235)AAA>AAT	p.K1745N		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1745	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGAACAAAAAACACGGCCTTC	0.517000													10	19					0	0	0.080935	0	0
PTEN	5728	broad.mit.edu	37	10	89692835	89692835	+	Missense_Mutation	SNP	G	T	T	rs57374291		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr10:89692835G>T	uc001kfb.2	+	6	1350	c.319G>T	c.(319-321)GAT>TAT	p.D107Y		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	107	Phosphatase tensin-type.		D -> Y (in BZS and glioblastoma; loss of phosphatase activity towards Ins(1,3,4,5)P4).		activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R55fs*1(4)|p.D107Y(3)|p.?(2)|p.Y27fs*1(2)|p.Y27_N212>Y(2)|p.D107N(1)|p.D107A(1)|p.F56fs*2(1)|p.P103fs*3(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		CTTTTGTGAAGATCTTGACCA	0.368000		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			22	41					1.36565e-18	1.56074e-18	0.076483	1	0
COPB1	1315	broad.mit.edu	37	11	14507918	14507918	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr11:14507918T>C	uc001mli.2	-	7	1139	c.832A>G	c.(832-834)ATC>GTC	p.I278V	COPB1_uc001mlg.2_Missense_Mutation_p.I278V|COPB1_uc001mlh.2_Missense_Mutation_p.I278V	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	278	HEAT 4.				COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						AGTACCTTGATTGCAGTTGGT	0.383000													5	158					0	0	0.021553	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653034	55653034	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr11:55653034C>T	uc010rip.1	+	2	222	c.130C>T	c.(130-132)CAA>TAA	p.Q44*	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	44	RING-type.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				CCTCAACTGGCAAGACACGGC	0.507000													7	24					0	0	0.029380	0	0
MS4A6E	245802	broad.mit.edu	37	11	60107365	60107365	+	Silent	SNP	T	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr11:60107365T>A	uc001npd.2	+	3	395	c.381T>A	c.(379-381)TCT>TCA	p.S127S		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	127	Helical; (Potential).					integral to membrane	receptor activity				0						TGCTGGTTTCTACTGTGTTGG	0.493000													68	175					0	0	0.048971	0	0
EXPH5	23086	broad.mit.edu	37	11	108381685	108381685	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr11:108381685G>T	uc001pkk.2	-	6	4660	c.4549C>A	c.(4549-4551)CTA>ATA	p.L1517I	EXPH5_uc010rvy.1_Missense_Mutation_p.L1329I|EXPH5_uc010rvz.1_Missense_Mutation_p.L1361I|EXPH5_uc010rwa.1_Missense_Mutation_p.L1441I	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1517					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		CCAAGCTGTAGTTTATGCAAT	0.433000													8	27					1.26484e-09	1.38613e-09	0.038147	1	0
EXPH5	23086	broad.mit.edu	37	11	108382533	108382533	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr11:108382533G>C	uc001pkk.2	-	6	3812	c.3701C>G	c.(3700-3702)ACG>AGG	p.T1234R	EXPH5_uc010rvy.1_Missense_Mutation_p.T1046R|EXPH5_uc010rvz.1_Missense_Mutation_p.T1078R|EXPH5_uc010rwa.1_Missense_Mutation_p.T1158R	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1234					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		AACAGAAAACGTACTAGTCGT	0.373000													24	86					0	0	0.083992	0	0
CPNE8	144402	broad.mit.edu	37	12	39087538	39087538	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr12:39087538T>C	uc001rls.1	-	15	1148	c.1064A>G	c.(1063-1065)GAC>GGC	p.D355G	CPNE8_uc001rlr.1_Missense_Mutation_p.D14G	NM_153634	NP_705898	Q86YQ8	CPNE8_HUMAN	copine VIII	355	VWFA.									pancreas(1)	1	Esophageal squamous(101;0.187)	Lung NSC(34;0.137)|Melanoma(24;0.152)|all_lung(34;0.157)				TTTATCACTGTCATAATCTTG	0.418000													3	112					0	0	0.004672	0	0
ORMDL2	29095	broad.mit.edu	37	12	56213247	56213247	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr12:56213247G>A	uc001shw.1	+	3	388	c.296G>A	c.(295-297)CGC>CAC	p.R99H	SARNP_uc009zoa.2_5'Flank|SARNP_uc001shs.3_5'Flank|SARNP_uc001sht.2_5'Flank|DNAJC14_uc001shu.1_Intron|SARNP_uc001shv.3_5'Flank	NM_014182	NP_054901	Q53FV1	ORML2_HUMAN	ORMDL2	99					ceramide metabolic process	endoplasmic reticulum membrane|integral to membrane					0						ACCTCTTCCCGCAAGTTCCTC	0.512000													5	136					0	0	0.029380	0	0
RPSAP52	204010	broad.mit.edu	37	12	66152273	66152273	+	Missense_Mutation	SNP	T	G	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr12:66152273T>G	uc001sso.2	-	2	671	c.250A>C	c.(250-252)AGT>CGT	p.S84R		NR_026825				SubName: Full=Putative uncharacterized protein RPSAP52;												0						TCTGACCCACTGAGGGAGCTC	0.498000													5	11					0	0	0.021553	0	0
FZD10	11211	broad.mit.edu	37	12	130648631	130648631	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr12:130648631G>A	uc001uii.2	+	1	1600	c.1144G>A	c.(1144-1146)GGG>AGG	p.G382R	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	382	Extracellular (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		CGAGCTCACCGGGGTCTGCTA	0.647000													18	37					0	0	0.043863	0	0
FSCB	84075	broad.mit.edu	37	14	44974724	44974724	+	Silent	SNP	G	A	A	rs147203426		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr14:44974724G>A	uc001wvn.2	-	1	1776	c.1467C>T	c.(1465-1467)GCC>GCT	p.A489A		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	489	Ala-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		ACCGAGCTTCGGCAGGAGTTT	0.502000													7	31					0	0	0.058154	0	0
RPL10L	140801	broad.mit.edu	37	14	47120403	47120403	+	Silent	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr14:47120403G>A	uc001wwg.2	-	1	626	c.537C>T	c.(535-537)GAC>GAT	p.D179D		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	179					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						CTTCAAATTCGTCAGCATTAA	0.517000													25	73					0	0	0.108266	0	0
ADAM6	8755	broad.mit.edu	37	14	107062306	107062306	+	RNA	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr14:107062306C>T	uc010tyt.1	-	131		c.6289G>A								Parts of antibodies, mostly variable regions.												0						TGGGGGCTGGCGGACCCAGAT	0.587000													12	24					0	0	0.020292	0	0
LOC646214	646214	broad.mit.edu	37	15	21936480	21936480	+	RNA	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr15:21936480C>T	uc010tzj.1	-	1		c.4260G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CTTTAAACCCCCAAAAGAGTA	0.333000													3	33					0	0	0.004672	0	0
HCN4	10021	broad.mit.edu	37	15	73615765	73615766	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr15:73615765_73615766GG>AA	uc002avp.2	-	8	3662_3663	c.2668_2669CC>TT	c.(2668-2670)CCC>TTC	p.P890F		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	890	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GGGAGCCGAGGGGGAGCCACAG	0.673000													5	7					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	15	76073329	76073329	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr15:76073329C>T	uc010umm.1	+	7	522	c.445C>T	c.(445-447)CGC>TGC	p.R149C	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		TCTGGCTGGCCGCCTGCAATA	0.527000													3	46					0	0	0.004672	0	0
C15orf42	90381	broad.mit.edu	37	15	90167424	90167424	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr15:90167424C>A	uc002boe.2	+	20	3883	c.3883C>A	c.(3883-3885)CCA>ACA	p.P1295T	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1295	Pro-rich.				cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			TCCAAAAAGACCAGGGAATTC	0.453000													42	86					9.39024e-22	1.08872e-21	0.111260	1	0
ACSM2A	123876	broad.mit.edu	37	16	20476848	20476848	+	Nonsense_Mutation	SNP	C	T	T	rs146541514		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr16:20476848C>T	uc010bwe.2	+	4	426	c.187C>T	c.(187-189)CGA>TGA	p.R63*	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_5'UTR|ACSM2A_uc002dhf.3_Nonsense_Mutation_p.R63*|ACSM2A_uc002dhg.3_Nonsense_Mutation_p.R63*|ACSM2A_uc010vay.1_5'UTR	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	63					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GGCTGGCAAGCGACTCCCAAG	0.517000													6	23					0	0	0.029380	0	0
MYO15A	51168	broad.mit.edu	37	17	18053797	18053797	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr17:18053797G>A	uc010vxh.1	+	35	7605	c.7267G>A	c.(7267-7269)GGT>AGT	p.G2423S		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2423	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AGGCCAGCCCGGTGGAGGCAG	0.617000													10	37					0	0	0.080935	0	0
NF1	4763	broad.mit.edu	37	17	29663747	29663747	+	Nonsense_Mutation	SNP	T	G	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr17:29663747T>G	uc002hgg.2	+	42	6575	c.6242T>G	c.(6241-6243)TTA>TGA	p.L2081*	NF1_uc002hgh.2_Nonsense_Mutation_p.L2060*|NF1_uc010cso.2_Nonsense_Mutation_p.L269*|NF1_uc010wbt.1_5'Flank|NF1_uc010wbu.1_5'Flank	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2081					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATTGCTATTTTAGCACGCTAC	0.408000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			23	60					0	0	0.083992	0	0
ACACA	31	broad.mit.edu	37	17	35631165	35631165	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr17:35631165A>T	uc002hnm.2	-	9	1007	c.816T>A	c.(814-816)AAT>AAA	p.N272K	ACACA_uc002hnk.2_Missense_Mutation_p.N194K|ACACA_uc002hnl.2_Missense_Mutation_p.N214K|ACACA_uc002hnn.2_Missense_Mutation_p.N272K|ACACA_uc002hno.2_Missense_Mutation_p.N309K|ACACA_uc010cuz.2_Missense_Mutation_p.N272K|ACACA_uc002hnq.2_Missense_Mutation_p.N194K	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	272	Biotin carboxylation.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TTGAAAAATCATTTTCCTGCC	0.408000													8	62					0	0	0.069234	0	0
CDK12	51755	broad.mit.edu	37	17	37687042	37687042	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr17:37687042C>A	uc010cvv.2	+	14	4532	c.3946C>A	c.(3946-3948)CTG>ATG	p.L1316M	CDK12_uc002hrw.3_Missense_Mutation_p.L1307M	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	1316					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						TCCTGGCCACCTGCCACATGA	0.582000										TCGA Ovarian(9;0.13)			4	102					0.00909568	0.0095744	0.009096	1	0
SDK2	54549	broad.mit.edu	37	17	71410870	71410870	+	Silent	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr17:71410870G>A	uc010dfm.2	-	18	2397	c.2397C>T	c.(2395-2397)CAC>CAT	p.H799H	SDK2_uc010dfn.2_Silent_p.H478H	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	799	Fibronectin type-III 3.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TGGCTTCCGCGTGCACATTGC	0.597000													14	25					0	0	0.033300	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14763803	14763803	+	Silent	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr18:14763803G>A	uc010dlo.2	+	7	1119	c.939G>A	c.(937-939)ACG>ACA	p.T313T	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	313										ovary(1)|skin(1)	2						TGGAGGGAACGTCTGCCAAAA	0.478000													8	12					0	0	0.038147	0	0
NEDD4L	23327	broad.mit.edu	37	18	56008358	56008358	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr18:56008358A>G	uc002lgy.2	+	14	1488	c.1214A>G	c.(1213-1215)AAT>AGT	p.N405S	NEDD4L_uc002lgz.2_Intron|NEDD4L_uc002lgx.2_Missense_Mutation_p.N385S|NEDD4L_uc010xee.1_Missense_Mutation_p.N284S|NEDD4L_uc002lhc.2_Missense_Mutation_p.N397S|NEDD4L_uc002lhd.2_Missense_Mutation_p.N284S|NEDD4L_uc002lhb.2_Missense_Mutation_p.N264S|NEDD4L_uc002lhe.2_Missense_Mutation_p.N377S|NEDD4L_uc002lhf.2_Missense_Mutation_p.N264S|NEDD4L_uc002lhg.2_Missense_Mutation_p.N284S|NEDD4L_uc002lhh.2_Intron|NEDD4L_uc010dpm.1_Intron	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	405	WW 2.				cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						TACTATGTCAATCATAACAAT	0.478000													4	7					0	0	0.009096	0	0
CD70	970	broad.mit.edu	37	19	6590911	6590911	+	Missense_Mutation	SNP	C	T	T	rs148772362		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr19:6590911C>T	uc002mfi.2	-	1	253	c.103G>A	c.(103-105)GTG>ATG	p.V35M	CD70_uc010xjf.1_Missense_Mutation_p.V35M	NM_001252	NP_001243	P32970	CD70_HUMAN	tumor necrosis factor ligand superfamily, member	35	Helical; Signal-anchor for type II membrane protein; (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to membrane of membrane fraction|integral to plasma membrane	cytokine activity|protease binding|tumor necrosis factor receptor binding				0						ATGCACACCACGAGGCAGATC	0.627000													29	57					0	0	0.041601	0	0
CPAMD8	27151	broad.mit.edu	37	19	17013546	17013546	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr19:17013546C>T	uc002nfb.2	-	35	4771	c.4739G>A	c.(4738-4740)CGA>CAA	p.R1580Q	CPAMD8_uc002nfd.1_Missense_Mutation_p.R45Q	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1533						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCAGTCTCCTCGGGAACCCTC	0.657000													6	53					0	0	0.021553	0	0
UBE2M	9040	broad.mit.edu	37	19	59068093	59068093	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr19:59068093T>C	uc002qtl.3	-	4	903	c.308A>G	c.(307-309)AAC>AGC	p.N103S	CHMP2A_uc002qti.2_5'Flank|CHMP2A_uc002qtj.2_5'Flank|CHMP2A_uc002qtk.2_5'Flank|LOC100131691_uc002qtm.2_5'Flank	NM_003969	NP_003960	P61081	UBC12_HUMAN	ubiquitin-conjugating enzyme E2M	103					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding|ribosomal S6-glutamic acid ligase activity|ubiquitin-protein ligase activity			ovary(1)|pancreas(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		GAGGTCAATGTTGGGGTGATA	0.582000													16	30					0	0	0.033300	0	0
PDIA6	10130	broad.mit.edu	37	2	10929977	10929977	+	Silent	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr2:10929977G>A	uc002rau.2	-	8	876	c.738C>T	c.(736-738)GGC>GGT	p.G246G	PDIA6_uc010yjg.1_Silent_p.G243G|PDIA6_uc002rav.2_Silent_p.G298G|PDIA6_uc010yjh.1_Silent_p.G251G|PDIA6_uc002raw.2_Silent_p.G294G	NM_005742	NP_005733	Q15084	PDIA6_HUMAN	protein disulfide isomerase A6 precursor	246	Thioredoxin 2.				cell redox homeostasis|glycerol ether metabolic process|protein folding	endoplasmic reticulum lumen|ER-Golgi intermediate compartment|melanosome|plasma membrane	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.149)|OV - Ovarian serous cystadenocarcinoma(76;0.15)		CAGGAGACTCGCCTTTCTGAA	0.423000													21	54					0	0	0.069288	0	0
KCNS3	3790	broad.mit.edu	37	2	18113581	18113581	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr2:18113581C>A	uc002rcv.2	+	3	1757	c.1306C>A	c.(1306-1308)CCT>ACT	p.P436T	KCNS3_uc002rcw.2_Missense_Mutation_p.P436T	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	436	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TCATGAGCTACCTTACTTTAA	0.453000													32	61					5.09552e-08	5.50867e-08	0.045705	1	0
C2orf63	130162	broad.mit.edu	37	2	55404777	55404777	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr2:55404777C>G	uc002ryi.2	-	12	1871	c.1525G>C	c.(1525-1527)GGC>CGC	p.G509R	C2orf63_uc002ryh.2_Missense_Mutation_p.G60R|C2orf63_uc002ryj.2_Missense_Mutation_p.G387R	NM_152385	NP_689598	Q8NHS4	CB063_HUMAN	hypothetical protein LOC130162 isoform 1	509							binding			ovary(2)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(58;0.179)|Lung(47;0.189)			AGCTTAATGCCAACTTTTTTC	0.353000													16	45					0	0	0.038395	0	0
COBLL1	22837	broad.mit.edu	37	2	165578649	165578649	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr2:165578649G>T	uc010zcw.1	-	9	1254	c.1130C>A	c.(1129-1131)GCA>GAA	p.A377E	COBLL1_uc002ucp.2_Missense_Mutation_p.A311E|COBLL1_uc002ucq.2_Missense_Mutation_p.A311E|COBLL1_uc010zcx.1_Missense_Mutation_p.A357E|COBLL1_uc002ucs.1_RNA|COBLL1_uc002uco.2_Missense_Mutation_p.A80E	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	349										ovary(2)|pancreas(1)	3						CTGGATGTGTGCAAGGTCTTG	0.488000													21	57					2.37509e-13	2.63899e-13	0.055883	1	0
ANKZF1	55139	broad.mit.edu	37	2	220100575	220100575	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr2:220100575C>T	uc002vkg.2	+	12	2123	c.1949C>T	c.(1948-1950)GCC>GTC	p.A650V	ANKZF1_uc002vkh.2_Missense_Mutation_p.A440V|ANKZF1_uc002vki.2_Missense_Mutation_p.A650V	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	650	Potential.					intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGGCGATTTGCCGCCCTCAGT	0.622000													4	102					0	0	0.009096	0	0
SPHKAP	80309	broad.mit.edu	37	2	228890206	228890206	+	Silent	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr2:228890206G>A	uc002vpq.2	-	5	392	c.345C>T	c.(343-345)ATC>ATT	p.I115I	SPHKAP_uc002vpp.2_Silent_p.I115I|SPHKAP_uc010zlx.1_Silent_p.I115I	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	115						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCATGGAACTGATAAGTTTTG	0.363000													5	96					0	0	0.021553	0	0
B3GNT7	93010	broad.mit.edu	37	2	232263412	232263412	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr2:232263412G>A	uc002vrs.2	+	2	1162	c.982G>A	c.(982-984)GTC>ATC	p.V328I		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	328	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		GATCGACGACGTCTTTCTGGG	0.672000													16	34					0	0	0.028581	0	0
GIGYF2	26058	broad.mit.edu	37	2	233681681	233681681	+	Missense_Mutation	SNP	G	A	A	rs149585458		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr2:233681681G>A	uc002vti.3	+	22	2646	c.2309G>A	c.(2308-2310)CGG>CAG	p.R770Q	GIGYF2_uc010zmj.1_Missense_Mutation_p.R770Q|GIGYF2_uc002vtg.2_Missense_Mutation_p.R764Q|GIGYF2_uc002vtj.3_Missense_Mutation_p.R791Q|GIGYF2_uc002vtk.3_Missense_Mutation_p.R770Q|GIGYF2_uc002vth.3_Missense_Mutation_p.R764Q|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.R601Q|GIGYF2_uc002vtq.3_Missense_Mutation_p.R103Q	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	770	Gln-rich.|Glu-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		GAAATTCTTCGGCGACAGCAG	0.488000													65	105					0	0	0.048971	0	0
MC3R	4159	broad.mit.edu	37	20	54824776	54824776	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr20:54824776G>A	uc002xxb.2	+	1	989	c.877G>A	c.(877-879)GTC>ATC	p.V293I		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	330	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			GTGCAACTCCGTCATCGACCC	0.552000													6	129					0	0	0.029380	0	0
PHACTR3	116154	broad.mit.edu	37	20	58349322	58349322	+	Silent	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr20:58349322G>A	uc002yau.2	+	7	1418	c.951G>A	c.(949-951)GGG>GGA	p.G317G	PHACTR3_uc002yat.2_Silent_p.G314G|PHACTR3_uc010zzw.1_Silent_p.G276G|PHACTR3_uc002yav.2_Silent_p.G276G|PHACTR3_uc002yaw.2_Silent_p.G276G|PHACTR3_uc002yax.2_Silent_p.G206G	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	317						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			AAAGTAAAGGGTCTCCAAAGA	0.527000													14	34					0	0	0.105934	0	0
LRRC3	81543	broad.mit.edu	37	21	45877263	45877263	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr21:45877263G>A	uc002zfa.2	+	2	1029	c.736G>A	c.(736-738)GCC>ACC	p.A246T		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	246						integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		TCTGCCCAGCGCCCCCGCCTC	0.652000													12	28					0	0	0.020292	0	0
Unknown	0	broad.mit.edu	37	22	18845995	18845995	+	RNA	SNP	T	C	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr22:18845995T>C	uc002zoe.2	+	5		c.2357T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CATCCCGTCCTGCGCAGGCCG	0.592000													4	38					0	0	0.021553	0	0
GGT1	2678	broad.mit.edu	37	22	25019873	25019873	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr22:25019873A>G	uc003aan.1	+	11	1497	c.1010A>G	c.(1009-1011)GAT>GGT	p.D337G	GGT1_uc003aas.1_Missense_Mutation_p.D337G|GGT1_uc003aat.1_Missense_Mutation_p.D337G|GGT1_uc003aau.1_Missense_Mutation_p.D337G|GGT1_uc003aav.1_Missense_Mutation_p.D337G|GGT1_uc003aaw.1_Missense_Mutation_p.D337G|GGT1_uc003aax.1_Missense_Mutation_p.D337G	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	337	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	AAGTTTGTGGATGTGACTGAG	0.627000													3	17					0	0	0.004672	0	0
SFI1	9814	broad.mit.edu	37	22	32013006	32013006	+	Missense_Mutation	SNP	G	C	C	rs143349198	by1000genomes	TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr22:32013006G>C	uc003ale.2	+	31	3847	c.3454G>C	c.(3454-3456)GAA>CAA	p.E1152Q	SFI1_uc003alf.2_Missense_Mutation_p.E1121Q|SFI1_uc003alg.2_Missense_Mutation_p.E1070Q|SFI1_uc011alp.1_Missense_Mutation_p.E1058Q|SFI1_uc011alq.1_Missense_Mutation_p.E1097Q|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA|SFI1_uc003ali.2_Missense_Mutation_p.E244Q|SFI1_uc003alj.2_Missense_Mutation_p.E286Q	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	1152	HAT 6.				G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						CCTTGAGGCTGAACTTGAGGA	0.567000													16	28					0	0	0.038395	0	0
DEPDC5	9681	broad.mit.edu	37	22	32302244	32302244	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr22:32302244C>T	uc003als.2	+	42	4622	c.4480C>T	c.(4480-4482)CGG>TGG	p.R1494W	DEPDC5_uc011als.1_Missense_Mutation_p.R1425W|DEPDC5_uc011alu.1_Missense_Mutation_p.R1525W|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.R1516W|DEPDC5_uc003alu.2_Missense_Mutation_p.R943W|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Missense_Mutation_p.R792W|DEPDC5_uc011alx.1_Missense_Mutation_p.R342W|DEPDC5_uc010gwk.2_Missense_Mutation_p.A529V|DEPDC5_uc011aly.1_Missense_Mutation_p.R342W	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1494					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						AGGGCAGCAGCGGCGGCGGCG	0.607000													9	26					0	0	0.020292	0	0
HTR3C	170572	broad.mit.edu	37	3	183774718	183774718	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr3:183774718C>T	uc003fmk.2	+	5	479	c.445C>T	c.(445-447)CGA>TGA	p.R149*		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	149	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CAGTGAAGGTCGAATTAAGTA	0.478000													37	100					0	0	0.092188	0	0
CLCN2	1181	broad.mit.edu	37	3	184075764	184075764	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr3:184075764G>A	uc003foi.2	-	5	725	c.601C>T	c.(601-603)CCG>TCG	p.P201S	CLCN2_uc003foh.2_5'Flank|CLCN2_uc010hya.1_Missense_Mutation_p.P201S|CLCN2_uc011brl.1_Missense_Mutation_p.P201S|CLCN2_uc011brm.1_Missense_Mutation_p.P157S|CLCN2_uc011brn.1_Missense_Mutation_p.P201S	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	201						chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	TTGCCAAGCGGCATCCCGCTG	0.597000													3	43					0	0	0.009096	0	0
PROM1	8842	broad.mit.edu	37	4	15991422	15991422	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr4:15991422A>G	uc003goo.2	-	18	2221	c.2009T>C	c.(2008-2010)CTG>CCG	p.L670P	PROM1_uc003gor.2_Missense_Mutation_p.L670P|PROM1_uc003gos.2_Missense_Mutation_p.L661P|PROM1_uc003got.2_Missense_Mutation_p.L670P|PROM1_uc003gou.2_Missense_Mutation_p.L661P|PROM1_uc003gop.2_Missense_Mutation_p.L661P|PROM1_uc003goq.3_Missense_Mutation_p.L661P	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	670	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						ATCTCTTTTCAGGGAGTTCCT	0.413000													4	5					0	0	0.021553	0	0
CCKAR	886	broad.mit.edu	37	4	26483467	26483467	+	Silent	SNP	G	A	A	rs150897748		TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr4:26483467G>A	uc003gse.1	-	5	1233	c.1080C>T	c.(1078-1080)TAC>TAT	p.Y360Y		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	360	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	AGGAGGAGGTGTAGGACAGGA	0.627000													20	81					0	0	0.049695	0	0
PPEF2	5470	broad.mit.edu	37	4	76812812	76812812	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr4:76812812C>T	uc003hix.2	-	4	587	c.230G>A	c.(229-231)AGC>AAC	p.S77N	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.S77N	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	77					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GTCGTTGTGGCTGCTGGGGAT	0.522000													85	173					0	0	0.048971	0	0
FAT4	79633	broad.mit.edu	37	4	126239159	126239159	+	Silent	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr4:126239159C>T	uc003ifj.3	+	1	1593	c.1593C>T	c.(1591-1593)CTC>CTT	p.L531L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	531	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ATAGCGGCCTCGTGACCACTG	0.547000											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	29					0	0	0.024245	0	0
MARCH11	441061	broad.mit.edu	37	5	16067657	16067657	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr5:16067657T>C	uc003jfo.2	-	4	1345	c.1132A>G	c.(1132-1134)AAT>GAT	p.N378D	MARCH11_uc010itw.1_Missense_Mutation_p.N134D	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	378						cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						CTCATCCGATTGAACAGGTGC	0.478000													41	116					0	0	0.111260	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176070	140176070	+	Silent	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr5:140176070C>T	uc003lhd.2	+	1	1627	c.1521C>T	c.(1519-1521)TAC>TAT	p.Y507Y	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.Y507Y|PCDHA2_uc011czy.1_Silent_p.Y507Y	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	507	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCGAGCTACGTTTCGGTGC	0.682000													11	38					0	0	0.024245	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475880	140475880	+	Silent	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr5:140475880C>T	uc003lil.2	+	1	1644	c.1506C>T	c.(1504-1506)CTC>CTT	p.L502L	PCDHB2_uc003lim.1_Silent_p.L163L	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	502	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCTGCCCCTCGCCTCCCTGG	0.692000													13	89					0	0	0.024245	0	0
PKHD1	5314	broad.mit.edu	37	6	51882309	51882309	+	Silent	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr6:51882309C>T	uc003pah.1	-	34	5775	c.5499G>A	c.(5497-5499)TCG>TCA	p.S1833S	PKHD1_uc003pai.2_Silent_p.S1833S	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1833	Extracellular (Potential).		S -> L (in ARPKD).		cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GGTAAGGCCACGATTCAAGCA	0.512000													25	105					0	0	0.091800	0	0
INHBA	3624	broad.mit.edu	37	7	41729539	41729539	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr7:41729539G>T	uc003thq.2	-	2	1225	c.990C>A	c.(988-990)TTC>TTA	p.F330L	INHBA_uc003thr.2_Missense_Mutation_p.F330L	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	330					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CGATGTCCTTGAAACTGACAA	0.567000										TSP Lung(11;0.080)			36	125					3.6622e-26	4.30847e-26	0.064281	1	0
DDC	1644	broad.mit.edu	37	7	50611629	50611629	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr7:50611629G>A	uc003tpf.3	-	2	241	c.155C>T	c.(154-156)ACG>ATG	p.T52M	DDC_uc010kza.2_Missense_Mutation_p.T52M|DDC_uc003tpg.3_Missense_Mutation_p.T52M	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	52					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	GTCCTCAAACGTGTCTGGCTC	0.557000													37	136					0	0	0.080422	0	0
GRM3	2913	broad.mit.edu	37	7	86415593	86415593	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr7:86415593G>A	uc003uid.2	+	3	1584	c.485G>A	c.(484-486)CGG>CAG	p.R162Q	GRM3_uc010lef.2_Missense_Mutation_p.R160Q|GRM3_uc010leg.2_Missense_Mutation_p.R34Q|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	162	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AACCTGCTGCGGCTCTTCCAG	0.522000													63	232					0	0	0.048971	0	0
SLC26A3	1811	broad.mit.edu	37	7	107423751	107423751	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr7:107423751C>T	uc003ver.2	-	9	1229	c.1018G>A	c.(1018-1020)GTA>ATA	p.V340I	SLC26A3_uc003ves.2_Missense_Mutation_p.V305I	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	340					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						CAATCTCCTACGGTGTTTTGG	0.418000													19	77					0	0	0.049695	0	0
BRAF	673	broad.mit.edu	37	7	140453154	140453154	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr7:140453154T>C	uc003vwc.3	-	15	1842	c.1781A>G	c.(1780-1782)GAT>GGT	p.D594G		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	594	Protein kinase.		D -> G (in NHL).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.D594G(27)|p.D594N(7)|p.D594K(3)|p.D594V(2)|p.D594_T599del(1)|p.D594E(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TAGACCAAAATCACCTATTTT	0.373000		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				21	82					0	0	0.069288	0	0
C8orf84	157869	broad.mit.edu	37	8	73993373	73993373	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr8:73993373C>T	uc003xzf.2	-	2	495	c.290G>A	c.(289-291)CGG>CAG	p.R97Q		NM_153225	NP_694957	Q8IVN8	RPESP_HUMAN	RPE-spondin precursor	97	TSP type-1.				immune response	extracellular region	polysaccharide binding|scavenger receptor activity				0						CGAGCGCCTCCGCACACGGGT	0.657000													5	86					0	0	0.014758	0	0
DAPK1	1612	broad.mit.edu	37	9	90301560	90301560	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr9:90301560G>A	uc004apc.2	+	21	2457	c.2319G>A	c.(2317-2319)ATG>ATA	p.M773I	DAPK1_uc004apd.2_Missense_Mutation_p.M773I|DAPK1_uc011ltg.1_Missense_Mutation_p.M773I|DAPK1_uc011lth.1_Missense_Mutation_p.M510I	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	773					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						CCAAAGGGATGCTGGAGGTGT	0.577000									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				10	10					0	0	0.058154	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449891	105449891	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chrX:105449891G>A	uc004emf.1	+	4	1115	c.466G>A	c.(466-468)GCA>ACA	p.A156T	MUM1L1_uc004emg.1_Missense_Mutation_p.A156T	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	156										ovary(2)|pancreas(1)|skin(1)	4						ATGCTTGTTAGCATCTTCAGA	0.413000													13	6					0	0	0.105934	0	0
NF1	4763	broad.mit.edu	37	17	29548901	29548901	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DU-6402-01A-11D-1705-08	TCGA-DU-6402-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	896ec7d7-5443-49bb-969b-7b483e9b518c	3bc825bc-5589-4e0b-b380-38fceee3231b	g.chr17:29548901delG	uc002hgg.2	+	15	2008	c.1675delG	c.(1675-1677)GATfs	p.D559fs	NF1_uc002hgf.1_Frame_Shift_Del_p.D559fs|NF1_uc002hgh.2_Frame_Shift_Del_p.D559fs|NF1_uc010csn.1_Frame_Shift_Del_p.D419fs	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	559					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGATAGCATTGATTTGTGGAA	0.274			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			23	45	---	---	---	---					
