Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16975030	16975030	+	RNA	SNP	G	A	A			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr1:16975030G>A	uc010och.1	+	7		c.1490G>A			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CTCGGTTCACGTTTACCTCCG	0.607000													4	54					0	0	0.001168	0	0
SYCP1	6847	broad.mit.edu	37	1	115524063	115524063	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr1:115524063G>A	uc001efr.2	+	29	2698	c.2489G>A	c.(2488-2490)GGC>GAC	p.G830D	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.G830D|SYCP1_uc009wgw.2_Missense_Mutation_p.G805D	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	830					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTTGATCATGGCATATCCAAA	0.333000													4	82					0	0	0.009096	0	0
RFWD2	64326	broad.mit.edu	37	1	176132079	176132079	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr1:176132079G>A	uc001gku.1	-	5	944	c.688C>T	c.(688-690)CAA>TAA	p.Q230*	RFWD2_uc001gkv.1_Nonsense_Mutation_p.Q226*|RFWD2_uc001gkw.1_Intron|RFWD2_uc009wwv.2_5'UTR|RFWD2_uc001gkt.1_Nonsense_Mutation_p.Q89*	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	230					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						AGGTTATCTTGGTCAGTTCCC	0.368000													8	70					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	11	55065601	55065601	+	RNA	SNP	C	G	G	rs4100282		TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr11:55065601C>G	uc001nhl.1	-	1		c.108G>C								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		CACTGAGCAACAACTGCCATG	0.488000													4	36					0	0	0.009096	0	0
MYF5	4617	broad.mit.edu	37	12	81112720	81112720	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr12:81112720C>T	uc001szg.2	+	3	793	c.658C>T	c.(658-660)CCT>TCT	p.P220S		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	220					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CTCAGAGCAACCTGGGTTGCC	0.488000													14	71					0	0	0.020292	0	0
ACIN1	22985	broad.mit.edu	37	14	23532675	23532675	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr14:23532675G>A	uc001wit.3	-	13	3209	c.2881C>T	c.(2881-2883)CCC>TCC	p.P961S	ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_Missense_Mutation_p.P203S|ACIN1_uc001wiq.3_Missense_Mutation_p.P203S|ACIN1_uc001wir.3_Missense_Mutation_p.P234S|ACIN1_uc001wis.3_Missense_Mutation_p.P642S|ACIN1_uc010akg.2_Missense_Mutation_p.P948S	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	961					apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		GCAGGTGGGGGCAAGGCCACC	0.517000													3	58					0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	17	16734855	16734855	+	Missense_Mutation	SNP	C	T	T	rs688852	by1000genomes	TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr17:16734855C>T	uc010vwr.1	-	3	720	c.278G>A	c.(277-279)CGG>CAG	p.R93Q						SubName: Full=cDNA FLJ53570, highly similar to Keratin, type I cytoskeletal 16;																		CACAGTCTGCCGCAGGGCCAG	0.632000													3	15					0	0	0.014758	0	0
ACACA	31	broad.mit.edu	37	17	35631165	35631165	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr17:35631165A>T	uc002hnm.2	-	9	1007	c.816T>A	c.(814-816)AAT>AAA	p.N272K	ACACA_uc002hnk.2_Missense_Mutation_p.N194K|ACACA_uc002hnl.2_Missense_Mutation_p.N214K|ACACA_uc002hnn.2_Missense_Mutation_p.N272K|ACACA_uc002hno.2_Missense_Mutation_p.N309K|ACACA_uc010cuz.2_Missense_Mutation_p.N272K|ACACA_uc002hnq.2_Missense_Mutation_p.N194K	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	272	Biotin carboxylation.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TTGAAAAATCATTTTCCTGCC	0.408000													8	86					0	0	0.003163	0	0
SEC14L3	266629	broad.mit.edu	37	22	30858119	30858119	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr22:30858119C>A	uc003ahy.2	-	9	814	c.725G>T	c.(724-726)GGG>GTG	p.G242V	SEC14L3_uc003ahz.2_Missense_Mutation_p.G165V|SEC14L3_uc003aia.2_Missense_Mutation_p.G183V|SEC14L3_uc003aib.2_Missense_Mutation_p.G183V	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	242	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	CAGGGTGCCCCCAAACTGGGC	0.517000													3	32					0.00024832	0.000262927	0.009096	1	0
ANKRD32	84250	broad.mit.edu	37	5	94014548	94014548	+	Silent	SNP	A	G	G			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr5:94014548A>G	uc003kkr.3	+	15	1943	c.1863A>G	c.(1861-1863)GGA>GGG	p.G621G	ANKRD32_uc003kks.2_5'UTR	NM_032290	NP_115666	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	621										ovary(2)	2		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		TATTGGCTGGAATTCTTGGAG	0.308000													12	56					0	0	0.008871	0	0
AR	367	broad.mit.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	T	T	rs5902610		TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chrX:66765161A>T	uc004dwu.1	+	1	1288	c.173A>T	c.(172-174)CAG>CTG	p.Q58L	AR_uc011mpd.1_Missense_Mutation_p.Q58L|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Missense_Mutation_p.Q58L	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	58	Modulating.|Poly-Gln.|Gln-rich.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	CTGCTGCTgcagcagcagcag	0.328000									Androgen_Insensitivity_Syndrome				3	34					0	0	0.004672	0	0
CTCFL	140690	broad.mit.edu	37	20	56099187	56099187	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr20:56099187delT	uc010gix.1	-	1	737	c.75delA	c.(73-75)AAAfs	p.K25fs	CTCFL_uc010giw.1_Frame_Shift_Del_p.K25fs|CTCFL_uc002xym.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjb.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjc.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjd.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gje.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjf.2_Intron|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gji.1_Intron|CTCFL_uc010gjj.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjk.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjl.1_Frame_Shift_Del_p.K25fs	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	25					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CCTTCAGGCCTTTTTCCGGCA	0.502													8	685	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9769171	9769172	+	RNA	INS	-	TT	TT			TCGA-DU-6406-01A-11D-1705-08	TCGA-DU-6406-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	17569950-b826-4112-bf60-5a82c88a345a	3029907d-e2f8-42c8-a7bd-56c8d3fa319e	g.chr21:9769171_9769172insTT	uc011abu.1	+	10		c.1146_1147insTT								Homo sapiens, clone IMAGE:4720764, mRNA.																		GAAATTGAATCATCAGTCTAGA	0.381													4	8	---	---	---	---					
