Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIF1B	23095	broad.mit.edu	37	1	10386237	10386237	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr1:10386237C>T	uc001aqx.3	+	27	2946	c.2744C>T	c.(2743-2745)ACG>ATG	p.T915M	KIF1B_uc001aqw.3_Missense_Mutation_p.T869M|KIF1B_uc001aqy.2_Missense_Mutation_p.T889M|KIF1B_uc001aqz.2_Missense_Mutation_p.T915M|KIF1B_uc001ara.2_Missense_Mutation_p.T875M|KIF1B_uc001arb.2_Missense_Mutation_p.T901M	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	915					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		ACTTTTTCCACGGCCGATTCC	0.572000													21	220					0	0	0.008871	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19209803	19209803	+	Silent	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr1:19209803G>A	uc001bbb.2	-	6	849	c.573C>T	c.(571-573)AGC>AGT	p.S191S	ALDH4A1_uc010ocu.1_Silent_p.S131S|ALDH4A1_uc001bbc.2_Silent_p.S191S	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	191				PPS -> LPY (in Ref. 9; AA sequence).	proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	TGCTGTTGGTGCTCGGGGGCA	0.647000													18	71					0	0	0.012319	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19209838	19209838	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr1:19209838G>C	uc001bbb.2	-	6	814	c.538C>G	c.(538-540)CTG>GTG	p.L180V	ALDH4A1_uc010ocu.1_Missense_Mutation_p.L120V|ALDH4A1_uc001bbc.2_Missense_Mutation_p.L180V	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	180					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	TGCCCCTCCAGCTCCACCGCA	0.642000													22	58					0	0	0.002780	0	0
TMEM39B	55116	broad.mit.edu	37	1	32542835	32542835	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr1:32542835C>T	uc010ogv.1	+	5	652	c.506C>T	c.(505-507)ACG>ATG	p.T169M	TMEM39B_uc010ogt.1_Intron|TMEM39B_uc010ogu.1_Missense_Mutation_p.T42M|TMEM39B_uc001bue.3_Missense_Mutation_p.T169M|TMEM39B_uc001buf.3_Intron|TMEM39B_uc010ogw.1_Intron	NM_018056	NP_060526	Q9GZU3	TM39B_HUMAN	transmembrane protein 39B	169	Helical; (Potential).					integral to membrane					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				ACCGTTCTCACGGCAACAGGC	0.592000													17	160					0	0	0.007413	0	0
EPHA10	284656	broad.mit.edu	37	1	38227461	38227461	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr1:38227461C>T	uc009vvi.2	-	3	552	c.466G>A	c.(466-468)GCG>ACG	p.A156T	EPHA10_uc001cbw.3_Missense_Mutation_p.A156T	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	156	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TCGTCCGCCGCGATCGTGTCG	0.657000													4	40					0	0	0.009096	0	0
FAM5C	339479	broad.mit.edu	37	1	190067492	190067492	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr1:190067492C>T	uc001gse.1	-	8	2189	c.1957G>A	c.(1957-1959)GAC>AAC	p.D653N	FAM5C_uc010pot.1_Missense_Mutation_p.D551N	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	653						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CGGGAAGGGTCAATAAACTCC	0.428000													35	57					0	0	0.003755	0	0
ARMC3	219681	broad.mit.edu	37	10	23292319	23292319	+	Silent	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr10:23292319C>T	uc001irm.3	+	13	1790	c.1707C>T	c.(1705-1707)AAC>AAT	p.N569N	ARMC3_uc010qcv.1_Silent_p.N569N|ARMC3_uc010qcw.1_Silent_p.N306N	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	569							binding				0						ACATAATTAACGATGGATTCT	0.323000													42	51					0	0	0.014410	0	0
ATG16L2	89849	broad.mit.edu	37	11	72528829	72528829	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr11:72528829G>C	uc001otd.2	+	3	287	c.247G>C	c.(247-249)GTC>CTC	p.V83L	ATG16L2_uc001otc.1_Missense_Mutation_p.V83L|ATG16L2_uc010rrf.1_Missense_Mutation_p.V83L|ATG16L2_uc001ote.2_5'UTR|ATG16L2_uc009ytj.1_Missense_Mutation_p.V83L	NM_033388	NP_203746	Q8NAA4	A16L2_HUMAN	ATG16 autophagy related 16-like 2	83					autophagy|protein transport	cytoplasm	protein binding				0			BRCA - Breast invasive adenocarcinoma(5;2.73e-06)			CTCAGACCAAGTCCCATCACT	0.587000													12	27					0	0	0.003163	0	0
BCL9L	283149	broad.mit.edu	37	11	118772576	118772576	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr11:118772576T>C	uc001pug.2	-	6	2841	c.1876A>G	c.(1876-1878)ATG>GTG	p.M626V	BCL9L_uc009zal.2_Missense_Mutation_p.M621V	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	626					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		ATGGCATTCATGGGCACCTCC	0.622000													11	23					0	0	0.001855	0	0
WNK1	65125	broad.mit.edu	37	12	994382	994382	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr12:994382C>T	uc001qio.3	+	19	4919	c.4412C>T	c.(4411-4413)CCT>CTT	p.P1471L	WNK1_uc001qip.3_Missense_Mutation_p.P1224L|WNK1_uc001qir.3_Missense_Mutation_p.P644L	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1471					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GGTCCTAAGCCTCCAGCTGTA	0.507000													27	82					0	0	0.005443	0	0
TOX4	9878	broad.mit.edu	37	14	21961062	21961062	+	Silent	SNP	T	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr14:21961062T>A	uc001waz.2	+	7	1390	c.1287T>A	c.(1285-1287)GCT>GCA	p.A429A	TOX4_uc001way.2_Silent_p.A299A|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Silent_p.A406A|TOX4_uc010tlv.1_Silent_p.A299A	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	429	Gln/Pro-rich.|Poly-Ala.					chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		CAGCAGCAGCTGCTGCTGCTG	0.582000													3	96					0	0	0.004672	0	0
PSMC6	5706	broad.mit.edu	37	14	53175072	53175072	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr14:53175072A>G	uc010tqx.1	+	2	173	c.173A>G	c.(172-174)GAA>GGA	p.E58G	PSMC6_uc010tqv.1_Missense_Mutation_p.E58G|PSMC6_uc010tqw.1_Intron	NM_002806	NP_002797	P62333	PRS10_HUMAN	proteasome 26S ATPase subunit 6	44					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding, bridging			lung(1)	1	Breast(41;0.176)					GAAAAGTCTGAAAATGATCTG	0.353000													20	18					0	0	0.004656	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713782	70713782	+	Missense_Mutation	SNP	A	G	G	rs114580810	by1000genomes	TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr14:70713782A>G	uc010ttg.1	-	1	737	c.86T>C	c.(85-87)TTT>TCT	p.F29S		NR_003951				SubName: Full=ADAM21-like protein;												0						GTCACCAGCAAATTTTGGTTC	0.443000													3	64					0	0	0.000602	0	0
COPS2	9318	broad.mit.edu	37	15	49447771	49447771	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr15:49447771G>C	uc001zxf.2	-	1	84	c.5C>G	c.(4-6)TCT>TGT	p.S2C	GALK2_uc001zxi.1_5'Flank|COPS2_uc001zxh.2_Missense_Mutation_p.S2C|COPS2_uc010ufa.1_Missense_Mutation_p.S2C	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	2					cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		CTCCATGTCAGACATCTTGGC	0.557000													39	40					0	0	0.014410	0	0
PDE8A	5151	broad.mit.edu	37	15	85610300	85610300	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr15:85610300G>A	uc002blh.2	+	3	488	c.299G>A	c.(298-300)TGT>TAT	p.C100Y	PDE8A_uc002bli.2_Missense_Mutation_p.C100Y|PDE8A_uc010bnc.2_Translation_Start_Site|PDE8A_uc010bnd.2_Translation_Start_Site|PDE8A_uc002blj.2_Translation_Start_Site|PDE8A_uc002blk.2_Translation_Start_Site	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	100					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			TGCAGGGCATGTGAAAAAGCA	0.383000													38	31					0	0	0.008740	0	0
DHX38	9785	broad.mit.edu	37	16	72132924	72132924	+	Missense_Mutation	SNP	C	T	T	rs148934675		TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr16:72132924C>T	uc002fcb.2	+	6	1218	c.863C>T	c.(862-864)CCG>CTG	p.P288L	DHX38_uc010vmp.1_Intron|DHX38_uc010cgn.1_RNA	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	288					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				GGGTCCACCCCGCGTCTGTCC	0.617000													16	29					0	0	0.007413	0	0
ZFHX3	463	broad.mit.edu	37	16	72993684	72993684	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr16:72993684C>A	uc002fck.2	-	2	1034	c.361G>T	c.(361-363)GAC>TAC	p.D121Y	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	121					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CTCTCCTCGTCCCCCTCCTCA	0.687000													18	93					7.41877e-09	8.27011e-09	0.012319	1	0
PLCG2	5336	broad.mit.edu	37	16	81953235	81953235	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr16:81953235C>A	uc002fgt.2	+	20	2353	c.2201C>A	c.(2200-2202)CCC>CAC	p.P734H	PLCG2_uc010chg.1_Missense_Mutation_p.P734H	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	734	SH2 2.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						CTGCGCTACCCCGTGACCCCC	0.512000													23	57					6.38683e-12	7.23841e-12	0.008361	1	0
METT10D	79066	broad.mit.edu	37	17	2324130	2324130	+	Silent	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr17:2324130G>A	uc002fut.2	-	9	1105	c.957C>T	c.(955-957)TCC>TCT	p.S319S	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_RNA|METT10D_uc002fuv.2_Intron|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_Silent_p.S101S	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	319							methyltransferase activity				0						CCTTCATCACGGACGCCAGCA	0.453000													79	179					0	0	0.014410	0	0
FLOT2	2319	broad.mit.edu	37	17	27207756	27207756	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr17:27207756G>A	uc002hdc.2	-	10	1346	c.1223C>T	c.(1222-1224)GCC>GTC	p.A408V		NM_004475	NP_004466	Q14254	FLOT2_HUMAN	flotillin 2	408					cell adhesion|epidermis development	cell surface|endocytic vesicle|endosome|membrane fraction					0	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;3.26e-06)|all cancers(11;1.76e-05)|BRCA - Breast invasive adenocarcinoma(11;0.00015)|OV - Ovarian serous cystadenocarcinoma(11;0.0602)			GCCTGTGAGGGCATGCACAGA	0.597000													5	138					0	0	0.001168	0	0
KIF19	124602	broad.mit.edu	37	17	72343952	72343952	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr17:72343952G>A	uc002jkm.3	+	9	1099	c.961G>A	c.(961-963)GCT>ACT	p.A321T	KIF19_uc002jkj.2_Missense_Mutation_p.A321T|KIF19_uc002jkk.2_Missense_Mutation_p.A279T|KIF19_uc002jkl.2_Missense_Mutation_p.A279T	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	321					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						AGTGATGATCGCTCACATCAG	0.627000													3	8					0	0	0.009096	0	0
ZNF57	126295	broad.mit.edu	37	19	2917807	2917807	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr19:2917807A>C	uc002lwr.2	+	4	1336	c.1188A>C	c.(1186-1188)CAA>CAC	p.Q396H	ZNF57_uc010xha.1_Missense_Mutation_p.Q364H	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	396	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		AATGTGAACAATGTGGGAAGG	0.428000													5	85					0	0	0.001168	0	0
ZNF557	79230	broad.mit.edu	37	19	7083553	7083553	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr19:7083553C>G	uc002mgb.2	+	8	1555	c.1070C>G	c.(1069-1071)ACA>AGA	p.T357R	ZNF557_uc002mga.2_Missense_Mutation_p.T364R|ZNF557_uc002mgc.2_Missense_Mutation_p.T364R	NM_001044388	NP_001037853	Q8N988	ZN557_HUMAN	zinc finger protein 557 isoform b	357	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2				Lung(535;0.179)		TTTTCTCTTACAATTCACAGG	0.383000													4	47					0	0	0.009096	0	0
LRP1B	53353	broad.mit.edu	37	2	141274478	141274478	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr2:141274478C>G	uc002tvj.1	-	50	9101	c.8129G>C	c.(8128-8130)GGA>GCA	p.G2710A		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2710	Extracellular (Potential).|LDL-receptor class A 15.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCATCACGTCCATCCTCACA	0.328000										TSP Lung(27;0.18)			25	67					0	0	0.012213	0	0
DNAH7	56171	broad.mit.edu	37	2	196877622	196877622	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr2:196877622C>T	uc002utj.3	-	10	979	c.878G>A	c.(877-879)CGT>CAT	p.R293H		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	293	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATCAACTAAACGTAATTTTCT	0.279000													16	23					0	0	0.007413	0	0
HSPA13	6782	broad.mit.edu	37	21	15748040	15748040	+	Silent	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr21:15748040G>A	uc002yjt.2	-	4	750	c.681C>T	c.(679-681)GGC>GGT	p.G227G	HSPA13_uc011abx.1_Silent_p.G19G	NM_006948	NP_008879	P48723	HSP13_HUMAN	heat shock protein 70kDa family member 13	227						endoplasmic reticulum|microsome	ATP binding			kidney(1)	1						GAGTTCCTCCGCCCAAGTCTA	0.433000													32	97					0	0	0.003755	0	0
BCR	613	broad.mit.edu	37	22	23631729	23631729	+	Silent	SNP	C	G	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr22:23631729C>G	uc002zww.2	+	13	3224	c.2628C>G	c.(2626-2628)TCC>TCG	p.S876S	BCR_uc002zwx.2_Silent_p.S876S|BCR_uc011aiy.1_Silent_p.S465S|BCR_uc002zwy.1_Silent_p.S162S	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	876	C2.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						CCCTGACATCCGTGGAGCTGC	0.572000			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								19	26					0	0	0.014323	0	0
PBRM1	55193	broad.mit.edu	37	3	52597305	52597305	+	Silent	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr3:52597305G>A	uc003des.2	-	24	4092	c.4080C>T	c.(4078-4080)CCC>CCT	p.P1360P	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Silent_p.P1360P|PBRM1_uc003der.2_Silent_p.P1328P|PBRM1_uc003det.2_Silent_p.P1375P|PBRM1_uc003deu.2_Silent_p.P1375P|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Silent_p.P1360P|PBRM1_uc010hmk.1_Silent_p.P1335P|PBRM1_uc003dey.2_Intron|PBRM1_uc003dez.1_Silent_p.P1359P	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1360					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TCACCTGTGGGGGTGTGTAGG	0.498000			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								4	64					0	0	0.001168	0	0
CACNA1D	776	broad.mit.edu	37	3	53837571	53837571	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr3:53837571G>C	uc003dgv.3	+	44	5720	c.5557G>C	c.(5557-5559)GAG>CAG	p.E1853Q	CACNA1D_uc003dgu.3_Missense_Mutation_p.E1873Q|CACNA1D_uc003dgy.3_Missense_Mutation_p.E1829Q|CACNA1D_uc003dgw.3_Missense_Mutation_p.E1520Q|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1853	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GGAATGCTACGAGGATGACAG	0.617000													84	169					0	0	0.014410	0	0
HLTF	6596	broad.mit.edu	37	3	148792096	148792096	+	Silent	SNP	A	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr3:148792096A>C	uc003ewq.1	-	4	653	c.435T>G	c.(433-435)CCT>CCG	p.P145P	HLTF_uc003ewr.1_Silent_p.P145P|HLTF_uc003ews.1_Silent_p.P145P|HLTF_uc010hve.1_Silent_p.P145P	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	145					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TCATATGCAGAGGCATGGTAA	0.363000													31	21					0	0	0.003755	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906713	164906713	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr3:164906713G>T	uc003fej.3	-	2	2350	c.1906C>A	c.(1906-1908)CCA>ACA	p.P636T	SLITRK3_uc003fek.2_Missense_Mutation_p.P636T	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	636	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GCACTGGTTGGTGCCCCAATA	0.527000										HNSCC(40;0.11)			11	31					3.07112e-06	3.31486e-06	0.010729	1	0
OTUD4	54726	broad.mit.edu	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr4:146059006G>A	uc003ika.3	-	21	2864	c.2726C>T	c.(2725-2727)ACT>ATT	p.T909I	OTUD4_uc003ijz.3_Missense_Mutation_p.T908I	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	973							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AACAGGCACAGTTTCTCTCTC	0.463000													5	152					0	0	0.000602	0	0
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	G	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr4:146059041A>G	uc003ika.3	-	21	2829	c.2691T>C	c.(2689-2691)CAT>CAC	p.H897H	OTUD4_uc003ijz.3_Silent_p.H896H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	961							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GAGTGGGAGGATGAGCCTTTC	0.478000													4	167					0	0	0.009096	0	0
GABRA1	2554	broad.mit.edu	37	5	161324195	161324195	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr5:161324195G>C	uc010jiw.2	+	11	1606	c.1138G>C	c.(1138-1140)GCC>CCC	p.A380P	GABRA1_uc010jix.2_Missense_Mutation_p.A380P|GABRA1_uc010jiy.2_Missense_Mutation_p.A380P|GABRA1_uc003lyx.3_Missense_Mutation_p.A380P|GABRA1_uc010jiz.2_Missense_Mutation_p.A380P|GABRA1_uc010jja.2_Missense_Mutation_p.A380P|GABRA1_uc010jjb.2_Missense_Mutation_p.A380P	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	380	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	CCCTAATTTGGCCAGGGGCGA	0.458000													36	118					0	0	0.011902	0	0
TMEM217	221468	broad.mit.edu	37	6	37186714	37186714	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr6:37186714G>C	uc003onl.2	-	2	174	c.93C>G	c.(91-93)ATC>ATG	p.I31M	TMEM217_uc010jwr.2_Missense_Mutation_p.I31M|TMEM217_uc010jws.2_Intron|TMEM217_uc003onm.3_Missense_Mutation_p.I31M	NM_145316	NP_660359	Q8N7C4	TM217_HUMAN	transmembrane protein 217 isoform 1	31	Helical; (Potential).					integral to membrane					0						TCTGTTCAAAGATGAGATACA	0.478000													3	158					0	0	0.004672	0	0
KIF25	3834	broad.mit.edu	37	6	168430272	168430272	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr6:168430272T>A	uc003qwk.1	+	2	269	c.7T>A	c.(7-9)TGG>AGG	p.W3R	KIF25_uc010kkt.1_RNA|KIF25_uc003qwl.1_Missense_Mutation_p.W3R	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	3	Kinesin-motor.				microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity	p.W3C(1)		ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CCAGATGACATGGACCTCAGG	0.602000													4	129					0	0	0.009096	0	0
DNAH11	8701	broad.mit.edu	37	7	21640450	21640450	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr7:21640450C>T	uc003svc.2	+	16	3188	c.3157C>T	c.(3157-3159)CTC>TTC	p.L1053F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1053	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GAAGCATTTTCTCTTGTATGG	0.438000									Kartagener_syndrome				50	135					0	0	0.014410	0	0
EGFR	1956	broad.mit.edu	37	7	55211008	55211008	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr7:55211008A>T	uc003tqk.2	+	3	497	c.251A>T	c.(250-252)GAG>GTG	p.E84V	EGFR_uc003tqh.2_Missense_Mutation_p.E84V|EGFR_uc003tqi.2_Missense_Mutation_p.E84V|EGFR_uc003tqj.2_Missense_Mutation_p.E84V|EGFR_uc010kzg.1_Missense_Mutation_p.E84V|EGFR_uc011kco.1_Missense_Mutation_p.E31V	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	84	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	ACCATCCAGGAGGTGGCTGGT	0.448000		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			23	65					0	0	0.008361	0	0
SEMA3E	9723	broad.mit.edu	37	7	83119551	83119551	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr7:83119551G>T	uc003uhy.1	-	2	621	c.155C>A	c.(154-156)CCT>CAT	p.P52H		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	52	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				AAATCCAAAAGGGCTATGAAA	0.413000													18	47					3.51602e-12	4.05236e-12	0.008871	1	0
RNF19A	25897	broad.mit.edu	37	8	101287238	101287238	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr8:101287238G>A	uc003yjj.1	-	4	1143	c.826C>T	c.(826-828)CGT>TGT	p.R276C	RNF19A_uc003yjk.1_Missense_Mutation_p.R276C	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	276					microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			GTTCTCAAACGTAAGCTCTGG	0.418000													24	61					0	0	0.004656	0	0
SLC45A4	57210	broad.mit.edu	37	8	142231748	142231748	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr8:142231748G>A	uc003ywd.1	-	2	513	c.205C>T	c.(205-207)CGG>TGG	p.R69W	SLC45A4_uc003ywc.1_Missense_Mutation_p.R69W|SLC45A4_uc010meq.1_Missense_Mutation_p.R67W	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	120					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			ATGAAGGGCCGCCGGCGGCCC	0.617000													6	75					0	0	0.001984	0	0
EPPK1	83481	broad.mit.edu	37	8	144945911	144945911	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr8:144945911C>T	uc003zaa.1	-	1	1524	c.1511G>A	c.(1510-1512)CGG>CAG	p.R504Q		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	504						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGGCCGGCCCCGGAACTTCCC	0.677000													8	15					0	0	0.003080	0	0
APBA1	320	broad.mit.edu	37	9	72131516	72131516	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr9:72131516G>T	uc004ahh.2	-	2	887	c.611C>A	c.(610-612)GCG>GAG	p.A204E		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	204					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						CAGCTCGGGCGCGTCCCCTAT	0.721000													12	12					7.93312e-07	8.70084e-07	0.002450	1	0
COL15A1	1306	broad.mit.edu	37	9	101778341	101778341	+	Silent	SNP	T	C	C			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr9:101778341T>C	uc004azb.1	+	11	1793	c.1587T>C	c.(1585-1587)CCT>CCC	p.P529P		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	529	Nonhelical region 1 (NC1).|4.|4 X tandem repeats.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CCGGCAGCCCTCCCCCTGATG	0.572000													3	60					0	0	0.004672	0	0
APOO	79135	broad.mit.edu	37	X	23899066	23899066	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chrX:23899066T>A	uc004dax.2	-	2	244	c.13A>T	c.(13-15)ATT>TTT	p.I5F	APOO_uc004daw.2_RNA|APOO_uc004day.3_RNA	NM_024122	NP_077027	Q9BUR5	APOO_HUMAN	apolipoprotein O precursor	5					lipid transport	high-density lipoprotein particle|integral to membrane|low-density lipoprotein particle|very-low-density lipoprotein particle					0						GACCTCTGAATTACCTGAAAT	0.478000													29	37					0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	X	51150493	51150493	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chrX:51150493G>A	uc004dpj.2	+	1	727	c.625G>A	c.(625-627)GCA>ACA	p.A209T		NM_203407	NP_981952			hypothetical protein LOC340602																		CGCATCTGAGGCAAGGCCTGC	0.647000													5	22					0	0	0.001984	0	0
ZXDB	158586	broad.mit.edu	37	X	57620231	57620231	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chrX:57620231G>A	uc004dvd.2	+	1	1963	c.1750G>A	c.(1750-1752)GCA>ACA	p.A584T		NM_007157	NP_009088	P98169	ZXDB_HUMAN	zinc finger, X-linked, duplicated B	584	Required for transcriptional activation (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TCAGCTAGAAGCAGCAAATTC	0.463000													10	192					0	0	0.002450	0	0
NXF2B	728343	broad.mit.edu	37	X	101623781	101623781	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chrX:101623781A>G	uc004ejb.3	-	19	2453	c.581T>C	c.(580-582)ATA>ACA	p.I194T	NXF2B_uc004eiz.3_Missense_Mutation_p.I106T|NXF2B_uc004eja.3_Missense_Mutation_p.I194T|NXF2_uc004eiy.3_Missense_Mutation_p.I194T	NM_001099686	NP_001093156	Q9GZY0	NXF2_HUMAN	nuclear RNA export factor 2B	194	RRM.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|RNA binding			ovary(1)	1						ATTGACAAATATACATATCTG	0.473000													24	59					0	0	0.010771	0	0
LUZP4	51213	broad.mit.edu	37	X	114541268	114541268	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chrX:114541268G>A	uc004eqa.2	+	4	875	c.841G>A	c.(841-843)GTG>ATG	p.V281M	LUZP4_uc004eqb.2_Missense_Mutation_p.V199M	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	281						nucleus				ovary(2)	2						GAGAGATCTCGTGGCCACTGA	0.428000													21	105					0	0	0.003330	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125686452	125686452	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chrX:125686452G>A	uc004eul.2	-	1	391	c.140C>T	c.(139-141)ACG>ATG	p.T47M		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	47										skin(3)|ovary(1)	4						CGAGCGATACGTCGCCGGCCG	0.721000													21	51					0	0	0.003954	0	0
DDX26B	203522	broad.mit.edu	37	X	134711345	134711345	+	Silent	SNP	A	G	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chrX:134711345A>G	uc004eyw.3	+	14	2364	c.2001A>G	c.(1999-2001)GTA>GTG	p.V667V	DDX26B_uc004eyx.3_Silent_p.V268V	NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	667											0	Acute lymphoblastic leukemia(192;6.56e-05)					CCACCCTTGTACATACAGGTA	0.443000													3	80					0	0	0.004672	0	0
CDR1	1038	broad.mit.edu	37	X	139866364	139866364	+	Silent	SNP	A	G	G			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chrX:139866364A>G	uc004fbg.1	-	1	360	c.168T>C	c.(166-168)GAT>GAC	p.D56D	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	56	23 X 6 AA approximate repeats.|9.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				CTTCCAGCAAATCCACGTCTT	0.438000													3	154					0	0	0.009096	0	0
PTEN	5728	broad.mit.edu	37	10	89717715	89717716	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr10:89717715_89717716insA	uc001kfb.2	+	8	1771_1772	c.740_741insA	c.(739-741)TTAfs	p.L247fs		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	247	C2 tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.P248fs*5(11)|p.R55fs*1(4)|p.L247*(3)|p.L247fs*10(2)|p.N212fs*1(2)|p.Y27fs*1(2)|p.L247fs*11(1)|p.L247fs*12(1)|p.G165_*404del(1)|p.L247fs*6(1)|p.L247fs*4(1)|p.?(1)|p.L247fs*5(1)|p.G165_K342del(1)|p.L247fs*8(1)|p.P246_L247insGP(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		CCTCAGCCGTTACCTGTGTGTG	0.406		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			48	53	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684394	26684395	+	Splice_Site	INS	-	G	G	rs113730440		TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr17:26684394_26684395insG	uc002haz.2	-	2	210	c.78_splice	c.e2+1	p.W26_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AGAGCGGCTTTGCCACCGGGCC	0.762													6	7	---	---	---	---					
PTPN18	26469	broad.mit.edu	37	2	131129929	131129934	+	In_Frame_Del	DEL	GACGGG	-	-	rs112040677		TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr2:131129929_131129934delGACGGG	uc002trc.2	+	13	1214_1219	c.1113_1118delGACGGG	c.(1111-1119)CAGACGGGG>CAG	p.TG378del	PTPN18_uc002trd.2_In_Frame_Del_p.TG357del|PTPN18_uc002trb.2_In_Frame_Del_p.TG271del|PTPN18_uc002tre.2_In_Frame_Del_p.TG29del	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	378_379				Missing (in Ref. 1; CAA56105).		cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					gtgggacgcagacggggacggggacg	0.568													3	4	---	---	---	---					
BACH1	571	broad.mit.edu	37	21	30699512	30699513	+	Frame_Shift_Del	DEL	TA	-	-	rs145991657		TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr21:30699512_30699513delTA	uc002ynj.2	+	3	1482_1483	c.1367_1368delTA	c.(1366-1368)TTAfs	p.L456fs	BACH1_uc002ynk.2_Frame_Shift_Del_p.L456fs|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	456						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						TTCACAACATTAAGTTCTGTCA	0.436													29	53	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1388467	1388468	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr4:1388467_1388468delCA	uc003gdf.2	+	1	3128_3129	c.168_169delCA	c.(166-171)CTCACAfs	p.L56fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	56_57					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACGTGCCCA	0.644													8	1081	---	---	---	---					
CACNA1B	774	broad.mit.edu	37	9	140938299	140938299	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DU-8158-01A-11D-2253-08	TCGA-DU-8158-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	f9019256-e13e-41ea-ab8b-f4d1e8715998	75357e93-258a-49ac-a33f-0fc24dbf88d2	g.chr9:140938299delC	uc004cog.2	+	21	3505	c.3360delC	c.(3358-3360)GGCfs	p.G1120fs	CACNA1B_uc011mfd.1_Frame_Shift_Del_p.G650fs|CACNA1B_uc004coi.2_Frame_Shift_Del_p.G330fs	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1120	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TGAGGAGCGGCCCCCGGCCTA	0.597													7	408	---	---	---	---					
