Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													4	12					0	0	0.009096	0	0
CACNA1E	777	broad.mit.edu	37	1	181707520	181707520	+	Silent	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr1:181707520C>T	uc001gow.2	+	24	3735	c.3570C>T	c.(3568-3570)GAC>GAT	p.D1190D	CACNA1E_uc009wxs.2_Silent_p.D1078D|CACNA1E_uc001gox.1_Silent_p.D416D|CACNA1E_uc009wxt.2_Silent_p.D416D	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1190	III.|Helical; Name=S2 of repeat III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGTATTTTGACTATGTGTTCA	0.478000													7	199					0	0	0.058154	0	0
DEGS1	8560	broad.mit.edu	37	1	224377867	224377867	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr1:224377867C>T	uc001hoj.2	+	2	782	c.671C>T	c.(670-672)CCA>CTA	p.P224L	DEGS1_uc001hoi.2_Missense_Mutation_p.P203L	NM_144780	NP_659004	O15121	DEGS1_HUMAN	degenerative spermatocyte homolog 1, lipid	224	Helical; (Potential).				sphingolipid metabolic process|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	electron carrier activity|protein binding|sphingolipid delta-4 desaturase activity				0	Breast(184;0.193)			GBM - Glioblastoma multiforme(131;0.00643)		GGTTTGCACCCAATTTCTGGA	0.373000													6	135					0	0	0.029380	0	0
OR2T4	127074	broad.mit.edu	37	1	248525565	248525565	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr1:248525565A>T	uc001ieh.1	+	1	683	c.683A>T	c.(682-684)GAG>GTG	p.E228V		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	228	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCACTCTATGAGATTTTCATG	0.478000													57	167					0	0	0.048971	0	0
NEBL	10529	broad.mit.edu	37	10	21097453	21097453	+	Missense_Mutation	SNP	G	A	A	rs143149169		TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr10:21097453G>A	uc001iqi.2	-	26	3144	c.2747C>T	c.(2746-2748)CCG>CTG	p.P916L	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	916	Linker.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TTCATCAGACGGTCTTGTTAC	0.408000													4	101					0	0	0.021553	0	0
AGAP7	653268	broad.mit.edu	37	10	51464832	51464832	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr10:51464832G>A	uc001jio.2	-	7	1750	c.1624C>T	c.(1624-1626)CGG>TGG	p.R542W	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	542	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CGGATCCACCGTTCCTTCTCT	0.567000													6	117					0	0	0.069234	0	0
POLR3A	11128	broad.mit.edu	37	10	79773462	79773462	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr10:79773462G>T	uc001jzn.2	-	11	1612	c.1518C>A	c.(1516-1518)AAC>AAA	p.N506K		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	506					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			GAAGATGAAGGTTCATTTCAT	0.478000													45	71					2.43468e-25	2.87074e-25	0.048971	1	0
FANK1	92565	broad.mit.edu	37	10	127668874	127668874	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr10:127668874A>G	uc001ljh.3	+	2	262	c.158A>G	c.(157-159)GAC>GGC	p.D53G	FANK1_uc010quk.1_Missense_Mutation_p.D47G|FANK1_uc009yan.2_Missense_Mutation_p.D53G|FANK1_uc001lji.2_Missense_Mutation_p.D47G	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	53	Fibronectin type-III.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				GAAGAAGAAGACCCCAAAATG	0.428000													30	30					0	0	0.080422	0	0
TALDO1	6888	broad.mit.edu	37	11	755990	755990	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr11:755990G>A	uc001lqz.2	+	2	259	c.209G>A	c.(208-210)CGG>CAG	p.R70Q	TALDO1_uc010qwl.1_Missense_Mutation_p.R70Q|TALDO1_uc001lra.2_Missense_Mutation_p.R70Q	NM_006755	NP_006746	P37837	TALDO_HUMAN	transaldolase 1	70					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;4.66e-26)|Epithelial(43;2.97e-25)|OV - Ovarian serous cystadenocarcinoma(40;1.48e-19)|BRCA - Breast invasive adenocarcinoma(625;4.41e-05)|Lung(200;0.0595)|LUSC - Lung squamous cell carcinoma(625;0.0712)		GCCTATGGCCGGAAGCTGGGC	0.607000													3	30					0	0	0.014758	0	0
MUC2	4583	broad.mit.edu	37	11	1101611	1101611	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr11:1101611G>A	uc001lsx.1	+	45	14737	c.14710G>A	c.(14710-14712)GAA>AAA	p.E4904K		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4904						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCTGGGATTCGAAGTGAAGAG	0.642000													72	74					0	0	0.048971	0	0
NLRP14	338323	broad.mit.edu	37	11	7081199	7081199	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr11:7081199C>T	uc001mfb.1	+	9	3031	c.2708C>T	c.(2707-2709)ACG>ATG	p.T903M		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	903	LRR 7.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AAGAGCCTGACGCATCTGGAT	0.453000													14	151					0	0	0.024245	0	0
SAA2	6289	broad.mit.edu	37	11	18269491	18269491	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr11:18269491G>A	uc001mnz.3	-	2	105	c.68C>T	c.(67-69)TCG>TTG	p.S23L	SAA2_uc009yhj.2_Missense_Mutation_p.S23L	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	23					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	GCCAAGGAACGAAAAGAAGCT	0.498000													27	37					0	0	0.050027	0	0
ARFGAP2	84364	broad.mit.edu	37	11	47193275	47193275	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr11:47193275A>C	uc001ndt.2	-	9	764	c.749T>G	c.(748-750)GTG>GGG	p.V250G	ARFGAP2_uc010rha.1_5'UTR|ARFGAP2_uc010rhb.1_Missense_Mutation_p.V222G|ARFGAP2_uc001ndu.2_Missense_Mutation_p.V114G|ARFGAP2_uc010rhc.1_5'UTR	NM_032389	NP_115765	Q8N6H7	ARFG2_HUMAN	ADP-ribosylation factor GTPase activating	250	Required for interaction with coatomer.|Potential.				protein transport|regulation of ARF GTPase activity|vesicle-mediated transport	Golgi membrane|nucleolus|plasma membrane	ARF GTPase activator activity|zinc ion binding			ovary(1)	1						CTTCTCTGCCACCTGAGCCTG	0.612000													7	60					0	0	0.013537	0	0
PTPRJ	5795	broad.mit.edu	37	11	48149530	48149530	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr11:48149530A>G	uc001ngp.3	+	7	1647	c.1292A>G	c.(1291-1293)AAC>AGC	p.N431S	PTPRJ_uc001ngo.3_Missense_Mutation_p.N431S	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	431	Extracellular (Potential).|Fibronectin type-III 4.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						ACCTTCTACAACATCACAGTG	0.577000													52	62					0	0	0.048971	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376782	8376782	+	Silent	SNP	G	A	A	rs77163560		TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr12:8376782G>A	uc001qui.2	-	5	712	c.153C>T	c.(151-153)GGC>GGT	p.G51G	FAM90A1_uc001quh.2_Silent_p.G51G	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	51							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TGGCCGTGTGGCCAAAGGCCT	0.537000													38	46					0	0	0.039052	0	0
TIMELESS	8914	broad.mit.edu	37	12	56827689	56827689	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr12:56827689C>G	uc001slf.2	-	3	287	c.119G>C	c.(118-120)CGC>CCC	p.R40P	TIMELESS_uc001slg.2_Missense_Mutation_p.R40P	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	40					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						CCTCAAATAGCGGATCAGATC	0.542000													15	147					0	0	0.043863	0	0
ZBTB39	9880	broad.mit.edu	37	12	57398076	57398076	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr12:57398076G>A	uc001sml.1	-	2	712	c.626C>T	c.(625-627)ACA>ATA	p.T209I	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	209					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						ATGGTCTTCTGTCTTTGGCGG	0.572000													14	83					0	0	0.028581	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373329	86373329	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr12:86373329A>T	uc001tai.3	-	8	2425	c.1175T>A	c.(1174-1176)ATT>AAT	p.I392N	MGAT4C_uc001tal.3_Missense_Mutation_p.I392N|MGAT4C_uc001taj.3_Missense_Mutation_p.I392N|MGAT4C_uc001tak.3_Missense_Mutation_p.I392N|MGAT4C_uc010sum.1_Missense_Mutation_p.I416N|MGAT4C_uc001tah.3_Missense_Mutation_p.I392N	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	392	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						ATTTACtttaattttttttat	0.353000													6	24					0	0	0.029380	0	0
UGGT2	55757	broad.mit.edu	37	13	96675958	96675958	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr13:96675958G>T	uc001vmt.2	-	3	467	c.297C>A	c.(295-297)GAC>GAA	p.D99E	UGGT2_uc010afo.2_RNA|UGGT2_uc001vmv.2_Missense_Mutation_p.D99E|UGGT2_uc010afp.2_Missense_Mutation_p.D99E	NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	99					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TGTGTAAATTGTCTAGAAACT	0.318000													3	67					0.004672	0.00485642	0.004672	1	0
C14orf145	145508	broad.mit.edu	37	14	81380710	81380710	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr14:81380710G>A	uc001xux.2	-	3	361	c.190C>T	c.(190-192)CGA>TGA	p.R64*	C14orf145_uc001xuz.2_Nonsense_Mutation_p.R64*|C14orf145_uc001xva.1_Nonsense_Mutation_p.R64*|C14orf145_uc010ata.1_Nonsense_Mutation_p.R64*	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	64						centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		TCTCGGTATCGTCCAAGCATC	0.403000													5	158					0	0	0.029380	0	0
ADAM6	8755	broad.mit.edu	37	14	106994102	106994102	+	RNA	SNP	C	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr14:106994102C>A	uc010tyt.1	-	187		c.8345G>T								Parts of antibodies, mostly variable regions.												0						CCACCAGCTGCACCTCACACT	0.517000													33	138					1.67305e-13	1.88815e-13	0.025465	1	0
ARHGAP11A	9824	broad.mit.edu	37	15	32929682	32929682	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr15:32929682A>G	uc001zgy.1	+	12	3430	c.2708A>G	c.(2707-2709)CAG>CGG	p.Q903R	ARHGAP11A_uc010ubw.1_Missense_Mutation_p.Q714R|ARHGAP11A_uc010ubx.1_Missense_Mutation_p.Q714R	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	903					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		CCTAAAGAACAGAAGTCCATG	0.398000													39	49					0	0	0.045515	0	0
AKAP13	11214	broad.mit.edu	37	15	86262400	86262400	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr15:86262400A>C	uc002blv.1	+	23	6265	c.6095A>C	c.(6094-6096)CAG>CCG	p.Q2032P	AKAP13_uc002blu.1_Missense_Mutation_p.Q2036P|AKAP13_uc010bnf.1_Missense_Mutation_p.Q653P|AKAP13_uc002blw.1_Missense_Mutation_p.Q497P|AKAP13_uc002blx.1_Missense_Mutation_p.Q277P	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2032	Interaction with ESR1.|DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CTTTTTGAGCAGCAGATGGTA	0.483000													22	33					0	0	0.018920	0	0
RPUSD1	113000	broad.mit.edu	37	16	837405	837405	+	Silent	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr16:837405G>A	uc002cka.2	-	2	489	c.255C>T	c.(253-255)AGC>AGT	p.S85S	RPUSD1_uc002ckb.2_Silent_p.S85S|RPUSD1_uc002ckc.2_5'UTR|RPUSD1_uc002ckd.2_Silent_p.S85S|CHTF18_uc010uus.1_5'Flank|CHTF18_uc010bre.1_5'Flank|CHTF18_uc002cke.3_5'Flank|CHTF18_uc002ckf.3_5'Flank|CHTF18_uc010brf.2_5'Flank|CHTF18_uc002ckg.3_5'Flank	NM_058192	NP_478072	Q9UJJ7	RUSD1_HUMAN	RNA pseudouridylate synthase domain containing	85					pseudouridine synthesis		pseudouridine synthase activity|RNA binding				0		Hepatocellular(780;0.00335)				ACCTGTACGCGCTGCCGGCGG	0.632000													2	3					0	0	0.004672	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1797211	1797211	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr16:1797211G>T	uc002cmk.2	+	6	1046	c.926G>T	c.(925-927)CGG>CTG	p.R309L	MAPK8IP3_uc002cmj.1_RNA|MAPK8IP3_uc002cml.2_Missense_Mutation_p.R309L|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.R310L	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	309					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						AAGCGTGCCCGGGAGAAGCGC	0.662000													24	39					1.42536e-11	1.58596e-11	0.024334	1	0
C16orf86	388284	broad.mit.edu	37	16	67701892	67701892	+	Silent	SNP	A	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr16:67701892A>G	uc002ety.2	+	3	601	c.444A>G	c.(442-444)CCA>CCG	p.P148P	C16orf48_uc002etw.1_5'Flank|C16orf48_uc010cem.1_5'Flank|C16orf86_uc002etx.1_Silent_p.P163P|C16orf86_uc002etz.2_RNA	NM_001012984	NP_001013002	Q6ZW13	CP086_HUMAN	hypothetical protein LOC388284	148											0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		AGCCCTCACCATCTGCCAAAC	0.607000											OREG0023886	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	29					0	0	0.038147	0	0
DPEP2	64174	broad.mit.edu	37	16	68026419	68026419	+	Silent	SNP	G	A	A	rs151283462		TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr16:68026419G>A	uc010cey.2	-	2	548	c.384C>T	c.(382-384)GGC>GGT	p.G128G	DPEP2_uc002evd.3_Silent_p.G128G|DPEP2_uc002eve.2_Silent_p.G128G|DPEP2_uc002evf.2_RNA|DPEP2_uc002evg.2_Intron	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	128					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		GTACCTGGGCGCCCACGAGGC	0.567000													44	62					0	0	0.048971	0	0
LIG3	3980	broad.mit.edu	37	17	33328319	33328319	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr17:33328319C>T	uc002hik.1	+	17	2483	c.2375C>T	c.(2374-2376)TCG>TTG	p.S792L	LIG3_uc002hij.2_Missense_Mutation_p.S792L	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	792					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	TTCTCCAAATCGGAGGCTCAT	0.502000								Other_BER_factors					20	32					0	0	0.055883	0	0
UNC45B	146862	broad.mit.edu	37	17	33495136	33495136	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr17:33495136C>T	uc002hja.2	+	10	1305	c.1208C>T	c.(1207-1209)TCA>TTA	p.S403L	UNC45B_uc002hjb.2_Missense_Mutation_p.S403L|UNC45B_uc002hjc.2_Missense_Mutation_p.S403L|UNC45B_uc010cto.2_Missense_Mutation_p.S403L	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	403					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				CAGACAGTGTCAGGGATCCTG	0.547000													35	64					0	0	0.048971	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305839	39305839	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr17:39305839A>T	uc002hwb.2	-	1	216	c.181T>A	c.(181-183)TGC>AGC	p.C61S		NM_033188	NP_149445	Q9BYR2	KRA45_HUMAN	keratin associated protein 4-5	61	27 X 5 AA repeats of C-C-[GRQVCHIEK]- [SPTR]-[VSTQYC].|9.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ctggagatgcagcagctaggg	0.274000													3	52					0	0	0.009096	0	0
SEC14L1	6397	broad.mit.edu	37	17	75208130	75208130	+	Silent	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr17:75208130G>A	uc002jto.2	+	15	1977	c.1710G>A	c.(1708-1710)TCG>TCA	p.S570S	SEC14L1_uc010dhc.2_Silent_p.S570S|SEC14L1_uc010wth.1_Silent_p.S570S|SEC14L1_uc002jtm.2_Silent_p.S570S|SEC14L1_uc010wti.1_Silent_p.S536S|SEC14L1_uc010wtj.1_Intron|SEC14L1_uc002jtr.2_5'UTR	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	570	GOLD.				transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						CCAAGAGGTCGCCACAACCAC	0.527000													125	195					0	0	0.048971	0	0
TNRC6C	57690	broad.mit.edu	37	17	76094488	76094488	+	Silent	SNP	G	T	T	rs145461604	by1000genomes	TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr17:76094488G>T	uc002jud.2	+	18	4971	c.4371G>T	c.(4369-4371)CTG>CTT	p.L1457L	TNRC6C_uc002juf.2_Silent_p.L1493L	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1457	Sufficient for translational repression when tethered to a target mRNA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			AAGCCTCTCTGTCTCATGAAC	0.557000													17	17					8.34094e-07	9.02649e-07	0.049695	1	0
Unknown	0	broad.mit.edu	37	18	14179433	14179433	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr18:14179433G>C	uc010xag.1	+	1	338	c.40G>C	c.(40-42)GTC>CTC	p.V14L						RecName: Full=Putative ankyrin repeat domain-containing protein 20A5;																		GGGCCAGACGGTCCTGGGCTC	0.602000													4	11					0	0	0.029380	0	0
DSG1	1828	broad.mit.edu	37	18	28934739	28934739	+	Silent	SNP	A	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr18:28934739A>G	uc002kwp.2	+	15	2792	c.2580A>G	c.(2578-2580)TCA>TCG	p.S860S	DSG1_uc010xbp.1_Silent_p.S219S	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	860	Desmoglein repeat 2.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GACCAGCATCAAACGTGGTAG	0.512000													17	182					0	0	0.038395	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570518	61570518	+	Silent	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr18:61570518C>T	uc010xeu.1	+	9	1560	c.1227C>T	c.(1225-1227)TTC>TTT	p.F409F	SERPINB2_uc002ljo.2_Silent_p.F409F|SERPINB2_uc010dqh.2_Silent_p.F339F|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	409					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TTTTATTTTTCGGCAGATTTT	0.388000													34	42					0	0	0.033182	0	0
KDM4B	23030	broad.mit.edu	37	19	5131427	5131427	+	Silent	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr19:5131427G>A	uc002mbq.3	+	12	1882	c.1656G>A	c.(1654-1656)GAG>GAA	p.E552E	KDM4B_uc010xim.1_Silent_p.E586E|KDM4B_uc002mbr.3_Silent_p.E310E	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	552					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						AGGCCTTTGAGCACTTTGCCC	0.657000													16	39					0	0	0.038395	0	0
MUC16	94025	broad.mit.edu	37	19	9058837	9058837	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr19:9058837G>T	uc002mkp.2	-	3	28813	c.28609C>A	c.(28609-28611)CCA>ACA	p.P9537T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9539	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGAAGCCTGGGGAAGAGGAA	0.483000													7	57					0.000157383	0.000165777	0.038147	1	0
ZNF442	79973	broad.mit.edu	37	19	12461542	12461542	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr19:12461542G>T	uc002mtr.1	-	6	1468	c.857C>A	c.(856-858)ACT>AAT	p.T286N	ZNF442_uc010xmk.1_Missense_Mutation_p.T217N	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	286	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						TCCAGTGTGAGTTCTTTCATG	0.413000													10	131					7.03913e-09	7.72349e-09	0.013537	1	0
ZNF208	7757	broad.mit.edu	37	19	22155320	22155320	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr19:22155320C>T	uc002nqp.2	-	5	2365	c.2216G>A	c.(2215-2217)GGC>GAC	p.G739D	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AAAGGCTTTGCCACATTCTTT	0.373000													28	21					0	0	0.050027	0	0
WASH2P	375260	broad.mit.edu	37	2	114356239	114356239	+	Silent	SNP	T	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr2:114356239T>C	uc002tkh.2	+	6	775	c.717T>C	c.(715-717)CGT>CGC	p.R239R	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCTTTGCCCGTGTGTCAGACT	0.642000													2	11					0	0	0.004672	0	0
TANC1	85461	broad.mit.edu	37	2	160053205	160053205	+	Silent	SNP	T	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr2:160053205T>C	uc002uag.2	+	18	3340	c.3066T>C	c.(3064-3066)ACT>ACC	p.T1022T	TANC1_uc010zcm.1_Silent_p.T1014T|TANC1_uc010fom.1_Silent_p.T828T|TANC1_uc010fon.2_5'Flank	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1022	ANK 4.					cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						ACCTGCTGACTTGTGAGTGGT	0.667000													55	65					0	0	0.048971	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								42	50					0	0	0.048971	0	0
D2HGDH	728294	broad.mit.edu	37	2	242707146	242707146	+	Missense_Mutation	SNP	A	G	G	rs149519095	by1000genomes	TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr2:242707146A>G	uc002wce.1	+	10	1501	c.1328A>G	c.(1327-1329)AAT>AGT	p.N443S	D2HGDH_uc010fzq.1_Missense_Mutation_p.N309S|D2HGDH_uc002wcg.1_RNA|D2HGDH_uc002wch.2_RNA|D2HGDH_uc002wci.2_Missense_Mutation_p.N142S	NM_152783	NP_689996	Q8N465	D2HDH_HUMAN	D-2-hydroxyglutarate dehydrogenase precursor	443					2-oxoglutarate metabolic process|cellular protein metabolic process|response to cobalt ion|response to manganese ion|response to zinc ion	mitochondrial matrix	(R)-2-hydroxyglutarate dehydrogenase activity|flavin adenine dinucleotide binding|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		CTGCACCTCAATGTGACGGCG	0.697000													35	51					0	0	0.048971	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354099	45354099	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr20:45354099G>A	uc002xsl.2	+	2	521	c.424G>A	c.(424-426)GGC>AGC	p.G142S		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	142	Helical; Name=5; (Potential).		G -> V (in ATS).			endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CTATGAGGCAGGCATCACCGT	0.622000													6	143					0	0	0.021553	0	0
TAB1	10454	broad.mit.edu	37	22	39824142	39824142	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr22:39824142G>A	uc003axt.2	+	10	1310	c.1261G>A	c.(1261-1263)GCT>ACT	p.A421T	TAB1_uc003axr.2_Missense_Mutation_p.A497T|TAB1_uc011aok.1_Missense_Mutation_p.A255T|TAB1_uc003axu.1_Missense_Mutation_p.A421T	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	421					activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						GGTCAACGGGGCTCACAGTGC	0.642000													10	95					0	0	0.024245	0	0
DNAH1	25981	broad.mit.edu	37	3	52420205	52420205	+	Silent	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr3:52420205G>A	uc011bef.1	+	55	8916	c.8655G>A	c.(8653-8655)CGG>CGA	p.R2885R	DNAH1_uc003ddv.2_5'UTR	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2885	Potential.|Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGGAGACCCGGAATTCAGTGC	0.478000													6	5					0	0	0.029380	0	0
PLXND1	23129	broad.mit.edu	37	3	129290353	129290353	+	Missense_Mutation	SNP	G	A	A	rs146029556		TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr3:129290353G>A	uc003emx.2	-	17	3435	c.3335C>T	c.(3334-3336)ACG>ATG	p.T1112M		NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1112	Extracellular (Potential).|IPT/TIG 3.				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						ATGCCTCACCGTGGGCTCCCG	0.662000													23	35					0	0	0.030593	0	0
BFSP2	8419	broad.mit.edu	37	3	133191307	133191307	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr3:133191307C>T	uc003epn.1	+	6	1280	c.1142C>T	c.(1141-1143)GCG>GTG	p.A381V		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	381	Rod.|Potential.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						CGAGCGGAGGCGGAGCAGCAG	0.667000													16	25					0	0	0.049695	0	0
PRR23B	389151	broad.mit.edu	37	3	138738764	138738764	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr3:138738764C>T	uc003esy.1	-	1	1005	c.740G>A	c.(739-741)CGC>CAC	p.R247H		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	247	Pro-rich.									breast(1)	1						GAGCGGCGAGCGCGCGTGGGG	0.657000													6	18					0	0	0.069234	0	0
DRD5	1816	broad.mit.edu	37	4	9784028	9784028	+	Silent	SNP	T	C	C	rs2227841	byFrequency	TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr4:9784028T>C	uc003gmb.3	+	1	771	c.375T>C	c.(373-375)ACT>ACC	p.T125T		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	125	Helical; Name=3; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TGTGCTCCACTGCCTCCATCC	0.622000													4	60					0	0	0.009096	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361507	70361507	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr4:70361507T>C	uc003hek.3	-	1	120	c.73A>G	c.(73-75)AAG>GAG	p.K25E	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.K25E	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	25					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						ACCAGCACCTTTCCACAACTC	0.458000													4	179					0	0	0.009096	0	0
LRAT	9227	broad.mit.edu	37	4	155665633	155665633	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr4:155665633A>G	uc003iom.1	+	1	482	c.155A>G	c.(154-156)GAG>GGG	p.E52G	uc003iol.2_Intron|LRAT_uc003ion.1_Missense_Mutation_p.E52G	NM_004744	NP_004735	O95237	LRAT_HUMAN	lecithin retinol acyltransferase	52	Cytoplasmic (By similarity).				response to stimulus|retinoid metabolic process|steroid metabolic process|visual perception	endoplasmic reticulum membrane|integral to membrane|multivesicular body|perinuclear region of cytoplasm|rough endoplasmic reticulum	phosphatidylcholine-retinol O-acyltransferase activity			central_nervous_system(1)	1	all_hematologic(180;0.215)	Renal(120;0.0458)			Vitamin A(DB00162)	GACGTGCTGGAGGTGCCCCGG	0.572000													4	103					0	0	0.021553	0	0
MLF1IP	79682	broad.mit.edu	37	4	185650178	185650178	+	Silent	SNP	T	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr4:185650178T>C	uc003iwq.2	-	3	178	c.108A>G	c.(106-108)CAA>CAG	p.Q36Q	MLF1IP_uc003iwp.2_RNA|MLF1IP_uc003iwr.1_Silent_p.Q36Q	NM_024629	NP_078905	Q71F23	CENPU_HUMAN	MLF1 interacting protein	36					CenH3-containing nucleosome assembly at centromere|interspecies interaction between organisms|mitotic prometaphase|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|condensed chromosome kinetochore|cytosol|nucleoplasm					0		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Hepatocellular(41;0.000519)|Colorectal(36;0.00172)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.0299)|all_hematologic(60;0.0592)|Medulloblastoma(177;0.146)		all cancers(43;7.83e-28)|Epithelial(43;2.56e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-11)|Colorectal(24;3.27e-06)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.16e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000252)|COAD - Colon adenocarcinoma(29;0.000512)|LUSC - Lung squamous cell carcinoma(40;0.01)|READ - Rectum adenocarcinoma(43;0.0419)		GCTTGCACTTTTGACCAGCTT	0.373000													6	44					0	0	0.029380	0	0
THBS4	7060	broad.mit.edu	37	5	79335903	79335903	+	Missense_Mutation	SNP	T	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr5:79335903T>G	uc003kgh.2	+	3	415	c.92T>G	c.(91-93)TTT>TGT	p.F31C		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	31	TSP N-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		TTCCCAGTCTTTGACCTTCTC	0.493000													52	66					0	0	0.048971	0	0
NDST1	3340	broad.mit.edu	37	5	149927941	149927941	+	Silent	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr5:149927941C>T	uc003lsk.3	+	12	2809	c.2307C>T	c.(2305-2307)CAC>CAT	p.H769H	NDST1_uc011dcj.1_Intron	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	769	Heparan sulfate N-sulfotransferase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTGCCTATCACGCCAACCAGG	0.627000													18	32					0	0	0.043863	0	0
FAT2	2196	broad.mit.edu	37	5	150945298	150945298	+	Silent	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr5:150945298C>T	uc003lue.3	-	1	3208	c.3195G>A	c.(3193-3195)GGG>GGA	p.G1065G	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Silent_p.G1065G	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1065	Cadherin 9.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACTGGAGCTCCCCATCCAAGC	0.617000													3	54					0	0	0.004672	0	0
GLRA1	2741	broad.mit.edu	37	5	151239373	151239373	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr5:151239373C>T	uc003lut.2	-	4	736	c.449G>A	c.(448-450)CGG>CAG	p.R150Q	GLRA1_uc003lur.2_Missense_Mutation_p.R150Q|GLRA1_uc003lus.2_Missense_Mutation_p.R67Q	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	150	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ATTCCCATTCCGGGAGATCCT	0.522000													21	38					0	0	0.076483	0	0
DSP	1832	broad.mit.edu	37	6	7583354	7583354	+	Silent	SNP	C	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr6:7583354C>A	uc003mxp.1	+	24	6138	c.5859C>A	c.(5857-5859)ACC>ACA	p.T1953T	DSP_uc003mxq.1_Silent_p.T1354T	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1953	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATCGAGAGACCCAGACTGAGT	0.522000													29	32					1.30897e-18	1.49868e-18	0.041601	1	0
MED23	9439	broad.mit.edu	37	6	131917229	131917229	+	Silent	SNP	A	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr6:131917229A>G	uc003qcs.1	-	22	3027	c.2853T>C	c.(2851-2853)TAT>TAC	p.Y951Y	MED23_uc003qcq.2_Silent_p.Y957Y|MED23_uc003qcr.1_5'Flank|MED23_uc011eca.1_Silent_p.Y592Y	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	951					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		AGATGGGCAGATAGGGAGACT	0.423000													18	132					0	0	0.049695	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44799776	44799776	+	Silent	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr7:44799776C>T	uc003tlr.2	+	8	1143	c.1020C>T	c.(1018-1020)GGC>GGT	p.G340G	ZMIZ2_uc003tlq.2_Intron|ZMIZ2_uc003tls.2_Intron|ZMIZ2_uc003tlt.2_5'UTR|ZMIZ2_uc010kyj.2_5'UTR	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	340	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						ACGGGCAGGGCGCCAGCTTCA	0.687000													8	55					0	0	0.058154	0	0
HGF	3082	broad.mit.edu	37	7	81372731	81372731	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr7:81372731C>T	uc003uhl.2	-	7	968	c.803G>A	c.(802-804)AGG>AAG	p.R268K	HGF_uc003uhm.2_Missense_Mutation_p.R263K|HGF_uc003uhn.1_Missense_Mutation_p.R268K|HGF_uc003uho.1_Missense_Mutation_p.R263K	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	268	Kringle 2.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						GCACCATGGCCTCGGCTGGCC	0.473000													46	41					0	0	0.048971	0	0
KLHDC10	23008	broad.mit.edu	37	7	129710591	129710591	+	Silent	SNP	T	G	G			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr7:129710591T>G	uc003vpj.1	+	1	243	c.108T>G	c.(106-108)GGT>GGG	p.G36G	KLHDC10_uc003vpk.1_Silent_p.G36G|KLHDC10_uc010lmb.1_Silent_p.G36G	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	36	Gly-rich.										0						gcagcgggggtcgggggACTG	0.353000													5	18					0	0	0.021553	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274000													3	43					0	0	0.029380	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163401	163401	+	RNA	SNP	G	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr8:163401G>C	uc010lra.2	-	4		c.732C>G			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						TCTGGTGCTTGTTGGCTTTAA	0.463000													3	16					0	0	0.009096	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587448	42587448	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr8:42587448C>T	uc003xpi.1	+	5	1126	c.998C>T	c.(997-999)CCC>CTC	p.P333L		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	333	Cytoplasmic (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CCCATGGCCCCCTGGGTTAAG	0.458000													7	175					0	0	0.047766	0	0
PREX2	80243	broad.mit.edu	37	8	69005869	69005869	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr8:69005869C>A	uc003xxv.1	+	21	2307	c.2280C>A	c.(2278-2280)AGC>AGA	p.S760R	PREX2_uc003xxu.1_Missense_Mutation_p.S760R|PREX2_uc011lez.1_Missense_Mutation_p.S695R	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	760					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTTATAATAGCATTGAGAGTG	0.423000													46	91					8.72198e-27	1.04399e-26	0.048971	1	0
TMEM71	137835	broad.mit.edu	37	8	133764099	133764099	+	Silent	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr8:133764099G>A	uc003ytp.2	-	4	475	c.246C>T	c.(244-246)TGC>TGT	p.C82C	TMEM71_uc003ytn.2_Silent_p.C82C|TMEM71_uc003yto.2_Silent_p.C82C	NM_144649	NP_653250	Q6P5X7	TMM71_HUMAN	transmembrane protein 71 isoform 1	82						integral to membrane				ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			CATCTTTGTCGCACAGGAAGC	0.468000													65	94					0	0	0.048971	0	0
CSF2RA	1438	broad.mit.edu	37	X	1409322	1409322	+	Missense_Mutation	SNP	G	A	A	rs147180621	byFrequency	TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chrX:1409322G>A	uc010nct.2	+	8	888	c.566G>A	c.(565-567)CGC>CAC	p.R189H	CSF2RA_uc011mhb.1_Missense_Mutation_p.R189H|CSF2RA_uc004cpq.2_Missense_Mutation_p.R189H|CSF2RA_uc004cpn.2_Missense_Mutation_p.R189H|CSF2RA_uc004cpo.2_Missense_Mutation_p.R189H|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.R56H|CSF2RA_uc004cpp.2_Missense_Mutation_p.R189H|CSF2RA_uc010ncv.2_Missense_Mutation_p.R189H|CSF2RA_uc004cpr.2_Missense_Mutation_p.R189H	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	189	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	TTAACGTCTCGCAATTACTTT	0.413000													88	178					0	0	0.048971	0	0
ATXN3L	92552	broad.mit.edu	37	X	13337542	13337542	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chrX:13337542T>C	uc010ned.2	-	1	977	c.512A>G	c.(511-513)GAC>GGC	p.D171G		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	171	Josephin.				protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						AGCTTCACAGTCTGGCAGATC	0.393000													30	49					0	0	0.050027	0	0
CASK	8573	broad.mit.edu	37	X	41393959	41393959	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chrX:41393959G>T	uc004dfl.3	-	24	2348	c.2302C>A	c.(2302-2304)CAT>AAT	p.H768N	CASK_uc004dfj.3_Missense_Mutation_p.H313N|CASK_uc004dfk.3_Missense_Mutation_p.H588N|CASK_uc004dfm.3_Missense_Mutation_p.H745N|CASK_uc004dfn.3_Missense_Mutation_p.H744N	NM_003688	NP_003679	O14936	CSKP_HUMAN	calcium/calmodulin-dependent serine protein	773	Guanylate kinase-like.				cell adhesion	actin cytoskeleton|cytoplasm|nucleus|plasma membrane	ATP binding|calmodulin binding|guanylate kinase activity|protein serine/threonine kinase activity			ovary(3)|lung(2)|stomach(1)	6						CATTGCTTACGTGGAATAGGG	0.299000													40	51					4.44401e-20	5.1629e-20	0.039052	1	0
CCNB3	85417	broad.mit.edu	37	X	50051784	50051784	+	Silent	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chrX:50051784G>A	uc004dox.3	+	6	913	c.615G>A	c.(613-615)GCG>GCA	p.A205A	CCNB3_uc004doy.2_Silent_p.A205A|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	205					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GTGATGATGCGTTTGTTATAG	0.408000													30	44					0	0	0.034045	0	0
MAGEE1	57692	broad.mit.edu	37	X	75649858	75649858	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chrX:75649858T>C	uc004ecm.1	+	1	1742	c.1535T>C	c.(1534-1536)ATC>ACC	p.I512T		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	512	MAGE 1.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						AAGTACCCTATCCGGGAGTCT	0.502000													29	62					0	0	0.074837	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117959418	117959418	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chrX:117959418G>A	uc004equ.2	+	4	684	c.211G>A	c.(211-213)GTC>ATC	p.V71I		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	71					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						agtcaatggcgtcctgccaga	0.055000													56	32					0	0	0.048971	0	0
FUBP1	8880	broad.mit.edu	37	1	78433338	78433339	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr1:78433338_78433339delTG	uc001dii.2	-	4	351_352	c.262_263delCA	c.(262-264)CAGfs	p.Q88fs	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Frame_Shift_Del_p.Q109fs	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	88					transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						CGGTGGTAACTGTGTTCCAAAA	0.267													35	5	---	---	---	---					
FLG2	388698	broad.mit.edu	37	1	152324558	152324559	+	Frame_Shift_Del	DEL	TG	-	-	rs140875805	byFrequency	TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr1:152324558_152324559delTG	uc001ezw.3	-	3	5776_5777	c.5703_5704delCA	c.(5701-5706)CACAGCfs	p.H1901fs	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1901_1902							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGCTTGGCTGTGTGTGTGTC	0.515													7	476	---	---	---	---					
TCERG1L	256536	broad.mit.edu	37	10	132944858	132944861	+	Frame_Shift_Del	DEL	CAGA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr10:132944858_132944861delCAGA	uc001lkp.2	-	7	1183_1186	c.1097_1100delTCTG	c.(1096-1101)GTCTGGfs	p.V366fs	TCERG1L_uc009yax.1_RNA	NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	366_367	WW 2.									large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		GGGCTTCTCCCAGACAGACAGGTG	0.554													15	45	---	---	---	---					
CREBZF	58487	broad.mit.edu	37	11	85375242	85375244	+	In_Frame_Del	DEL	CTT	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr11:85375242_85375244delCTT	uc001pas.2	-	1	939_941	c.676_678delAAG	c.(676-678)AAGdel	p.K226del	CREBZF_uc010rtc.1_RNA|CREBZF_uc010rtd.1_RNA	NM_001039618	NP_001034707	Q9NS37	ZHANG_HUMAN	HCF-binding transcription factor Zhangfei	226	Basic motif.				negative regulation of gene expression, epigenetic|negative regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|response to virus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)				TCACGTACTCCTTCTTCTTCAGT	0.384											OREG0021274	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	57	128	---	---	---	---					
ITGB7	3695	broad.mit.edu	37	12	53586167	53586169	+	In_Frame_Del	DEL	AAG	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr12:53586167_53586169delAAG	uc009zmv.2	-	13	2171_2173	c.2100_2102delCTT	c.(2098-2103)TTCTTG>TTG	p.F700del	ITGB7_uc001scc.2_In_Frame_Del_p.F700del|ITGB7_uc010snz.1_RNA	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	700	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						ATCCTCCACCAAGAAGAAGAACA	0.567													42	125	---	---	---	---					
ERBB3	2065	broad.mit.edu	37	12	56495375	56495377	+	In_Frame_Del	DEL	GAA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr12:56495375_56495377delGAA	uc001sjh.2	+	28	3758_3760	c.3565_3567delGAA	c.(3565-3567)GAAdel	p.E1191del	ERBB3_uc009zoj.2_RNA|ERBB3_uc010sqb.1_In_Frame_Del_p.E548del|ERBB3_uc010sqc.1_In_Frame_Del_p.E1132del|ERBB3_uc009zok.2_In_Frame_Del_p.E456del|ERBB3_uc001sjk.2_In_Frame_Del_p.E432del|ERBB3_uc001sjl.2_In_Frame_Del_p.E311del|PA2G4_uc001sjm.2_5'Flank|PA2G4_uc009zol.2_5'Flank|PA2G4_uc009zom.2_5'Flank	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	1191	Cytoplasmic (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			CCTGGGTACTGAAGAAGAAGATG	0.522													9	75	---	---	---	---					
CLPX	10845	broad.mit.edu	37	15	65443196	65443198	+	In_Frame_Del	DEL	CTT	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr15:65443196_65443198delCTT	uc002aom.2	-	14	1937_1939	c.1865_1867delAAG	c.(1864-1869)GAAGGA>GGA	p.E622del	CLPX_uc010uiu.1_RNA	NM_006660	NP_006651	O76031	CLPX_HUMAN	ClpX caseinolytic protease X homolog precursor	622					protein folding|proteolysis involved in cellular protein catabolic process	mitochondrial endopeptidase Clp complex|mitochondrial inner membrane|mitochondrial nucleoid	ATP binding|ATPase activity|metal ion binding|peptidase activator activity|unfolded protein binding				0						CGGGGCCATCCTTCTTCTTCAAC	0.384													96	166	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42795593	42795594	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr19:42795593_42795594delTG	uc002otf.1	+	10	2713_2714	c.2673_2674delTG	c.(2671-2676)TCTGTAfs	p.S891fs		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	891_892	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				TCCTGCAGTCTGTACCCTCCGC	0.624			T	DUX4	soft tissue sarcoma								49	12	---	---	---	---					
FAM168B	130074	broad.mit.edu	37	2	131813195	131813197	+	In_Frame_Del	DEL	GGA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr2:131813195_131813197delGGA	uc002tsd.2	-	4	455_457	c.226_228delTCC	c.(226-228)TCCdel	p.S76del		NM_001009993	NP_001009993	A1KXE4	F168B_HUMAN	hypothetical protein LOC130074	76											0						AGGGGTTCGGGGAGGAGGAGTAC	0.586													7	125	---	---	---	---					
PBRM1	55193	broad.mit.edu	37	3	52661373	52661376	+	Frame_Shift_Del	DEL	TCTT	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr3:52661373_52661376delTCTT	uc003des.2	-	13	1466_1469	c.1454_1457delAAGA	c.(1453-1458)AAAGAGfs	p.K485fs	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Frame_Shift_Del_p.K485fs|PBRM1_uc003der.2_Frame_Shift_Del_p.K453fs|PBRM1_uc003det.2_Frame_Shift_Del_p.K485fs|PBRM1_uc003deu.2_Frame_Shift_Del_p.K485fs|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Frame_Shift_Del_p.K485fs|PBRM1_uc010hmk.1_Frame_Shift_Del_p.K485fs|PBRM1_uc003dey.2_Frame_Shift_Del_p.K485fs|PBRM1_uc003dez.1_Frame_Shift_Del_p.K485fs|PBRM1_uc003dfb.1_Frame_Shift_Del_p.K383fs	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	485_486					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		CCTGGCAAGCTCTTTCTTCTTTGC	0.422			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								27	22	---	---	---	---					
PIK3CA	5290	broad.mit.edu	37	3	178916938	178916940	+	In_Frame_Del	DEL	GAA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr3:178916938_178916940delGAA	uc003fjk.2	+	2	482_484	c.325_327delGAA	c.(325-327)GAAdel	p.E110del		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	110					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E109del(2)|p.G106_R108del(1)|p.E110K(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AGGCAACCGTGAAGAAAAGATCC	0.340		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			39	57	---	---	---	---					
WDFY3	23001	broad.mit.edu	37	4	85715705	85715708	+	Frame_Shift_Del	DEL	CAAT	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr4:85715705_85715708delCAAT	uc003hpd.2	-	21	3859_3862	c.3451_3454delATTG	c.(3451-3456)ATTGTTfs	p.I1151fs		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1151_1152						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TTGGTGGAAACAATCAGAGATCGG	0.358													49	159	---	---	---	---					
SAP30	8819	broad.mit.edu	37	4	174292617	174292619	+	In_Frame_Del	DEL	AGA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr4:174292617_174292619delAGA	uc003itd.2	+	1	525_527	c.284_286delAGA	c.(283-288)CAGAAG>CAG	p.K97del		NM_003864	NP_003855	O75446	SAP30_HUMAN	Sin3A-associated protein, 30kDa	97	Interaction with NCOR1 (By similarity).|Atypical.				transcription, DNA-dependent	histone deacetylase complex	DNA binding|metal ion binding|protein binding|transcription corepressor activity			ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.15e-17)|Epithelial(43;4.33e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.62e-09)|STAD - Stomach adenocarcinoma(60;0.00278)|GBM - Glioblastoma multiforme(59;0.00659)|LUSC - Lung squamous cell carcinoma(193;0.0919)		AGCATCTCCCAGAAGAAGGTGAA	0.675													22	50	---	---	---	---					
DMXL1	1657	broad.mit.edu	37	5	118479596	118479598	+	In_Frame_Del	DEL	ATT	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr5:118479596_118479598delATT	uc003ksd.2	+	14	2618_2620	c.2437_2439delATT	c.(2437-2439)ATTdel	p.I814del	DMXL1_uc010jcl.1_In_Frame_Del_p.I814del	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	814										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		GCCAGGATGCATTATTGCATTAG	0.286													122	281	---	---	---	---					
HSD17B4	3295	broad.mit.edu	37	5	118810104	118810106	+	In_Frame_Del	DEL	GAA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr5:118810104_118810106delGAA	uc003ksj.2	+	4	352_354	c.229_231delGAA	c.(229-231)GAAdel	p.E78del	HSD17B4_uc011cwg.1_In_Frame_Del_p.E54del|HSD17B4_uc011cwh.1_In_Frame_Del_p.E60del|HSD17B4_uc011cwi.1_In_Frame_Del_p.E103del|HSD17B4_uc003ksk.3_5'UTR|HSD17B4_uc011cwj.1_5'Flank|HSD17B4_uc010jcn.1_5'Flank	NM_000414	NP_000405	P51659	DHB4_HUMAN	hydroxysteroid (17-beta) dehydrogenase 4	78	(3R)-hydroxyacyl-CoA dehydrogenase.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3-hydroxyacyl-CoA dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity|estradiol 17-beta-dehydrogenase activity|isomerase activity|long-chain-enoyl-CoA hydratase activity|protein binding|sterol binding|sterol transporter activity			ovary(1)|pancreas(1)	2		all_cancers(142;0.0206)|Prostate(80;0.0322)		OV - Ovarian serous cystadenocarcinoma(64;0.000247)|Epithelial(69;0.000849)|all cancers(49;0.0122)	NADH(DB00157)	AGATTCAGTGGAAGAAGGAGAGA	0.419													79	120	---	---	---	---					
CYFIP2	26999	broad.mit.edu	37	5	156746913	156746915	+	In_Frame_Del	DEL	GAA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr5:156746913_156746915delGAA	uc003lwq.2	+	16	1638_1640	c.1500_1502delGAA	c.(1498-1503)CGGAAG>CGG	p.K503del	CYFIP2_uc011ddn.1_In_Frame_Del_p.K477del|CYFIP2_uc011ddo.1_In_Frame_Del_p.K307del|CYFIP2_uc003lwr.2_In_Frame_Del_p.K503del|CYFIP2_uc003lws.2_In_Frame_Del_p.K503del|CYFIP2_uc003lwt.2_In_Frame_Del_p.K381del|CYFIP2_uc011ddp.1_In_Frame_Del_p.K237del	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	503					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGGCGGTACGGAAGAAGAAGAAT	0.567													51	322	---	---	---	---					
SLC44A4	80736	broad.mit.edu	37	6	31832672	31832674	+	In_Frame_Del	DEL	AAG	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr6:31832672_31832674delAAG	uc010jti.2	-	19	1911_1913	c.1845_1847delCTT	c.(1843-1848)TTCTTT>TTT	p.615_616FF>F	NEU1_uc003nxq.3_5'Flank|NEU1_uc010jtg.2_5'Flank|NEU1_uc003nxr.3_5'Flank|NEU1_uc010jth.2_5'Flank|NEU1_uc003nxs.3_5'Flank	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	615_616	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	GGAGAAAAAAAAGAAGGACAGGA	0.567													7	25	---	---	---	---					
HDAC2	3066	broad.mit.edu	37	6	114277817	114277818	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr6:114277817_114277818delAA	uc003pwd.1	-	4	605_606	c.605_606delTT	c.(604-606)TTTfs	p.F202fs	HDAC2_uc003pwc.1_Frame_Shift_Del_p.F78fs|HDAC2_uc003pwe.1_Frame_Shift_Del_p.F78fs	NM_001527	NP_001518	Q92769	HDAC2_HUMAN	histone deacetylase 2	108	Histone deacetylase.				blood coagulation|dendrite development|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|maintenance of chromatin silencing|negative regulation of apoptosis|negative regulation of cell cycle|negative regulation of neuron projection development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of proteolysis|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|ESC/E(Z) complex|NuRD complex|Sin3 complex	chromatin binding|enzyme binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|sequence-specific DNA binding|transcription factor binding			skin(2)|ovary(1)|central_nervous_system(1)	4		all_cancers(87;0.000629)|all_epithelial(87;0.00274)|Colorectal(196;0.0317)|all_lung(197;0.24)		all cancers(137;0.00318)|OV - Ovarian serous cystadenocarcinoma(136;0.00569)|Epithelial(106;0.0112)|GBM - Glioblastoma multiforme(226;0.0832)	Vorinostat(DB02546)	GACAAAACTCAAAGAGTCCATC	0.361													16	87	---	---	---	---					
TSPYL4	23270	broad.mit.edu	37	6	116574192	116574195	+	Frame_Shift_Del	DEL	GAAA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr6:116574192_116574195delGAAA	uc003pwn.2	-	1	1067_1070	c.977_980delTTTC	c.(976-981)CTTTCCfs	p.L326fs	DSE_uc011ebf.1_5'Flank|TSPYL4_uc011ebe.1_Frame_Shift_Del_p.L154fs|uc003pwo.1_5'Flank	NM_021648	NP_067680	Q9UJ04	TSYL4_HUMAN	TSPY-like 4	326_327					nucleosome assembly	nucleus					0		all_cancers(87;0.0144)|all_epithelial(87;0.021)|Colorectal(196;0.234)		all cancers(137;0.045)|OV - Ovarian serous cystadenocarcinoma(136;0.0666)|GBM - Glioblastoma multiforme(226;0.095)|Epithelial(106;0.125)		GATTGGAGTGGAAAGAGACACCAC	0.525													8	75	---	---	---	---					
PAEP	5047	broad.mit.edu	37	9	138453690	138453690	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr9:138453690delG	uc004cge.1	+	1	87	c.43delG	c.(43-45)GGTfs	p.G15fs	PAEP_uc010naw.1_Frame_Shift_Del_p.G15fs|PAEP_uc010naz.2_RNA|PAEP_uc010nay.2_Frame_Shift_Del_p.G15fs|PAEP_uc010nba.1_Frame_Shift_Del_p.G15fs|PAEP_uc004cgd.1_Frame_Shift_Del_p.G15fs|PAEP_uc011mdp.1_Frame_Shift_Del_p.G15fs|PAEP_uc004cgg.1_Frame_Shift_Del_p.G15fs|PAEP_uc010nbc.1_Frame_Shift_Del_p.G15fs|PAEP_uc004cgf.1_Frame_Shift_Del_p.G15fs	NM_001018049	NP_001018059	P09466	PAEP_HUMAN	glycodelin precursor	15					multicellular organismal development	extracellular region	binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		CCTGGTCTGTGGTGTCCCGGC	0.667													2	4	---	---	---	---					
NOTCH1	4851	broad.mit.edu	37	9	139412252	139412254	+	In_Frame_Del	DEL	CGT	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr9:139412252_139412254delCGT	uc004chz.2	-	8	1391_1393	c.1391_1393delACG	c.(1390-1395)GACGCC>GCC	p.D464del		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	464	Extracellular (Potential).|EGF-like 12; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		AGGCAGGTGGCGTCGTTCTGGCA	0.665			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			25	132	---	---	---	---					
NOTCH1	4851	broad.mit.edu	37	9	139413070	139413072	+	In_Frame_Del	DEL	AGA	-	-			TCGA-DU-8168-01A-11D-2253-08	TCGA-DU-8168-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4a6fa4e0-950d-443a-9b46-1c06afd74a00	f43e15d0-53eb-4076-81f8-e5c44e43b9d9	g.chr9:139413070_139413072delAGA	uc004chz.2	-	6	1070_1072	c.1070_1072delTCT	c.(1069-1074)TTCTAC>TAC	p.F357del		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	357	Extracellular (Potential).|EGF-like 9; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CACTCGCAGTAGAAGGAGGCCAC	0.655			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			10	20	---	---	---	---					
