Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZNF691	51058	broad.mit.edu	37	1	43317456	43317456	+	Missense_Mutation	SNP	G	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr1:43317456G>T	uc001cih.2	+	2	959	c.908G>T	c.(907-909)GGC>GTC	p.G303V	ZNF691_uc001cig.2_Missense_Mutation_p.G276V|ZNF691_uc009vwm.2_Missense_Mutation_p.G296V	NM_015911	NP_056995	Q5VV52	ZN691_HUMAN	zinc finger protein 691	139						nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ACTCACTTGGGCGAACAGGCT	0.552													6	52					0.00198382	0.00251556	0.001984	1	0
KIAA0907	22889	broad.mit.edu	37	1	155887393	155887393	+	Missense_Mutation	SNP	T	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr1:155887393T>G	uc001fmi.1	-	11	1361	c.1337A>C	c.(1336-1338)CAG>CCG	p.Q446P	KIAA0907_uc001fmj.1_Missense_Mutation_p.Q446P|KIAA0907_uc009wrk.1_Missense_Mutation_p.Q303P|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	446	Pro-rich.										0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			gggctggggctggggctgggg	0.448													10	35					0	0	0.001368	0	0
MYOC	4653	broad.mit.edu	37	1	171605340	171605340	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr1:171605340C>T	uc001ghu.2	-	3	1262	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	MYOC_uc010pmk.1_Missense_Mutation_p.E356K	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	414	Olfactomedin-like.		E -> K.		anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CAGGTTTGTTCGAGTTCCAGA	0.527													34	129					0	0	0.004878	0	0
SNRPE	6635	broad.mit.edu	37	1	203832798	203832798	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr1:203832798G>A	uc001hai.2	+	3	137	c.89G>A	c.(88-90)CGG>CAG	p.R30Q	SNRPE_uc010pqn.1_RNA	NM_003094	NP_003085	P62304	RUXE_HUMAN	small nuclear ribonucleoprotein polypeptide E	30					histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	protein binding|RNA binding				0	all_cancers(21;0.103)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CAGAGATCGCGGATTCAGGTG	0.299													555	123					0	0	0.003610	0	0
NRAP	4892	broad.mit.edu	37	10	115401191	115401191	+	Missense_Mutation	SNP	C	T	T	rs138124439		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr10:115401191C>T	uc001laj.2	-	13	1420	c.1256G>A	c.(1255-1257)CGC>CAC	p.R419H	NRAP_uc001lak.2_Missense_Mutation_p.R384H|NRAP_uc001lal.3_Missense_Mutation_p.R419H	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	419	Nebulin 10.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TCCTTCATAGCGGCCTCTCAT	0.438													25	93					0	0	0.005443	0	0
PRSS23	11098	broad.mit.edu	37	11	86519582	86519582	+	Missense_Mutation	SNP	C	A	A	rs150416218		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr11:86519582C>A	uc001pcb.2	+	2	1113	c.897C>A	c.(895-897)GAC>GAA	p.D299E	PRSS23_uc001pcc.1_Intron|PRSS23_uc010rts.1_Missense_Mutation_p.D267E	NM_007173	NP_009104	O95084	PRS23_HUMAN	protease, serine, 23 precursor	299					proteolysis	extracellular region|nucleus	serine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				ACGTCAAAGACGAGACCTATG	0.557													15	114					3.52763e-06	4.56735e-06	0.004990	1	0
APOA4	337	broad.mit.edu	37	11	116691938	116691938	+	Missense_Mutation	SNP	C	T	T	rs1042372		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr11:116691938C>T	uc001pps.1	-	3	940	c.836G>A	c.(835-837)AGG>AAG	p.R279K		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		GGTGTTGCCCCTCAGGTTGCC	0.677													6	118					0	0	0.001168	0	0
TMEM225	338661	broad.mit.edu	37	11	123753867	123753867	+	Missense_Mutation	SNP	C	T	T	rs114749572	byFrequency	TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr11:123753867C>T	uc001pzi.2	-	4	864	c.656G>A	c.(655-657)CGT>CAT	p.R219H		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	219						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						GGTTACGTGACGTGTTTGGAC	0.418													8	93					0	0	0.006214	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130341228	130341228	+	Silent	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr11:130341228G>A	uc010scd.1	+	7	2028	c.2028G>A	c.(2026-2028)GGG>GGA	p.G676G		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	676	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GGGTGTGTGGGGGAGACAATA	0.572													12	69					0	0	0.002450	0	0
LOC100288778	100288778	broad.mit.edu	37	12	88936	88936	+	Silent	SNP	A	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr12:88936A>C	uc010scy.1	+	7	912	c.357A>C	c.(355-357)GCA>GCC	p.A119A	LOC100288778_uc010scz.1_RNA|LOC100288778_uc010sdc.1_RNA|LOC100288778_uc010sdd.1_Silent_p.A119A|LOC100288778_uc010sde.1_Silent_p.A119A|LOC100288778_uc010sdf.1_Silent_p.A119A|LOC100288778_uc010sdg.1_Silent_p.A119A|LOC100288778_uc010sdh.1_RNA					SubName: Full=Actin nucleation promoting factor; Flags: Fragment;												0						TGGCCAGTGCACCCCCACTCC	0.512													3	4					0	0	0.004672	0	0
CHD4	1108	broad.mit.edu	37	12	6702730	6702730	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr12:6702730T>C	uc001qpo.2	-	16	2530	c.2366A>G	c.(2365-2367)AAC>AGC	p.N789S	CHD4_uc001qpn.2_Missense_Mutation_p.N782S|CHD4_uc001qpp.2_Missense_Mutation_p.N786S	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	789	Helicase ATP-binding.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CCGCTCCCAGTTGATGATGGT	0.532													29	147					0	0	0.005443	0	0
CLEC4C	170482	broad.mit.edu	37	12	7883393	7883393	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr12:7883393G>A	uc001qtg.1	-	5	671	c.497C>T	c.(496-498)ACA>ATA	p.T166I	CLEC4C_uc001qth.1_Missense_Mutation_p.T166I|CLEC4C_uc001qti.1_Missense_Mutation_p.T135I	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	166	Extracellular (Potential).|C-type lectin.				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		CTATACTCACGTGACATTTTC	0.433													18	99					0	0	0.001523	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57989740	57989740	+	Missense_Mutation	SNP	C	T	T	rs144510690		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr12:57989740C>T	uc001sou.2	+	4	570	c.439C>T	c.(439-441)CGG>TGG	p.R147W	PIP4K2C_uc001sot.2_Missense_Mutation_p.R147W|PIP4K2C_uc010srs.1_Missense_Mutation_p.R129W|PIP4K2C_uc010srt.1_Intron	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	147	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					CTCCTACGATCGGACTCTGGT	0.522													25	111					0	0	0.003954	0	0
C12orf12	196477	broad.mit.edu	37	12	91347670	91347670	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr12:91347670T>C	uc001tbj.2	-	1	1284	c.850A>G	c.(850-852)AAT>GAT	p.N284D		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	284	Potential.|Glu-rich.									central_nervous_system(1)|pancreas(1)	2						tcatcatcatttttcttctcc	0.264													7	308					0	0	0.003080	0	0
UTP20	27340	broad.mit.edu	37	12	101750464	101750464	+	Missense_Mutation	SNP	C	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr12:101750464C>G	uc001tia.1	+	42	5683	c.5527C>G	c.(5527-5529)CTG>GTG	p.L1843V		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1843	HEAT 2.				endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						GGAAGCTAATCTGCCAAGGTA	0.363													3	26					0	0	0.000248	0	0
ACACB	32	broad.mit.edu	37	12	109625810	109625810	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr12:109625810A>G	uc001tob.2	+	13	2106	c.1987A>G	c.(1987-1989)AAG>GAG	p.K663E	ACACB_uc001toc.2_Missense_Mutation_p.K663E	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	663	Biotin carboxylation.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CCAGGGTTTTAAGCCGAGCTC	0.498													3	82					0	0	0.004672	0	0
CENPJ	55835	broad.mit.edu	37	13	25479612	25479612	+	Missense_Mutation	SNP	C	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr13:25479612C>G	uc001upt.3	-	7	2817	c.2564G>C	c.(2563-2565)AGG>ACG	p.R855T	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA|CENPJ_uc001upu.2_5'Flank	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	855					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		TCTGCTCCTCCTGGACTTGCT	0.428													11	67					0	0	0.008291	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724284	38724284	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr14:38724284G>A	uc001wum.1	-	1	1291	c.944C>T	c.(943-945)CCG>CTG	p.P315L		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	315	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		TGTTCTCTGCGGCACGGGGCT	0.617													21	123					0	0	0.002780	0	0
LRFN5	145581	broad.mit.edu	37	14	42355895	42355895	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr14:42355895C>T	uc001wvm.2	+	3	1265	c.67C>T	c.(67-69)CGT>TGT	p.R23C	LRFN5_uc010ana.2_Missense_Mutation_p.R23C	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	23	Extracellular (Potential).|LRRNT.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		CTGTCCAAAGCGTTGTGTCTG	0.398										HNSCC(30;0.082)			5	35					0	0	0.001168	0	0
RTN1	6252	broad.mit.edu	37	14	60212786	60212786	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr14:60212786C>T	uc001xen.1	-	2	864	c.655G>A	c.(655-657)GAC>AAC	p.D219N		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	219					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		AAGTCCAAGTCTTTATCTTCC	0.448													44	218					0	0	0.002222	0	0
ADAM6	8755	broad.mit.edu	37	14	106349748	106349748	+	RNA	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr14:106349748C>T	uc010tyt.1	-	3178		c.50139G>A								Parts of antibodies, mostly variable regions.												0						CTGCTATGGGCGGCACCACTG	0.627													9	69					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	106714532	106714532	+	RNA	SNP	C	T	T	rs74186048	by1000genomes	TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr14:106714532C>T	uc010tyt.1	-	645		c.19073G>A								Parts of antibodies, mostly variable regions.												0						CATTCCAGCCCCTTCCCGGGA	0.522													6	59					0	0	0.001168	0	0
LOC646214	646214	broad.mit.edu	37	15	21937331	21937331	+	RNA	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr15:21937331G>A	uc010tzj.1	-	1		c.3409C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CCAGTGCAACGTCAGTAGCAG	0.348													13	88					0	0	0.003163	0	0
RYR3	6263	broad.mit.edu	37	15	33962623	33962623	+	Missense_Mutation	SNP	T	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr15:33962623T>G	uc001zhi.2	+	38	5796	c.5726T>G	c.(5725-5727)GTT>GGT	p.V1909G	RYR3_uc010bar.2_Missense_Mutation_p.V1909G	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1909	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGCTAGGGGTTCCTTTggaa	0.398													10	23					0	0	0.007413	0	0
ZNF770	54989	broad.mit.edu	37	15	35274299	35274299	+	Nonsense_Mutation	SNP	G	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr15:35274299G>C	uc001ziw.2	-	3	1648	c.1337C>G	c.(1336-1338)TCA>TGA	p.S446*		NM_014106	NP_054825	Q6IQ21	ZN770_HUMAN	zinc finger protein 770	446					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(122;4.59e-10)|all_lung(180;8.78e-09)		all cancers(64;1.97e-18)|GBM - Glioblastoma multiforme(113;2.11e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0643)		TTCCTCACCTGATGAACCACA	0.343													12	67					0	0	0.001368	0	0
DUOX2	50506	broad.mit.edu	37	15	45389890	45389890	+	Silent	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr15:45389890G>A	uc010bea.2	-	28	3818	c.3615C>T	c.(3613-3615)TTC>TTT	p.F1205F	DUOX2_uc001zun.2_Silent_p.F1205F	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1205	Interaction with TXNDC11 (By similarity).|Helical; (Potential).|Ferric oxidoreductase.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		GGTGGGAGGCGAAGACATACA	0.617													28	83					0	0	0.007291	0	0
SLC28A1	9154	broad.mit.edu	37	15	85467219	85467219	+	Missense_Mutation	SNP	G	A	A	rs150926643		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr15:85467219G>A	uc002blg.2	+	12	1163	c.961G>A	c.(961-963)GAG>AAG	p.E321K	SLC28A1_uc010upd.1_Missense_Mutation_p.E243K|SLC28A1_uc010bnb.2_Missense_Mutation_p.E321K|SLC28A1_uc010upe.1_Missense_Mutation_p.E321K|SLC28A1_uc010upf.1_Missense_Mutation_p.E321K|SLC28A1_uc010upg.1_Missense_Mutation_p.E321K	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	321					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TTTGCAGACCGAGGCTCCATT	0.567													9	57					0	0	0.004482	0	0
MCTP2	55784	broad.mit.edu	37	15	94943169	94943169	+	Missense_Mutation	SNP	C	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr15:94943169C>G	uc002btj.2	+	15	1975	c.1910C>G	c.(1909-1911)ACT>AGT	p.T637S	MCTP2_uc010boj.2_Missense_Mutation_p.T366S|MCTP2_uc010bok.2_Missense_Mutation_p.T637S|MCTP2_uc002btk.3_Missense_Mutation_p.T225S|MCTP2_uc002btl.2_Missense_Mutation_p.T225S	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	637					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AGTATTAGGACTTTTACTCCC	0.448													21	125					0	0	0.002299	0	0
LASS3	204219	broad.mit.edu	37	15	100996220	100996220	+	Missense_Mutation	SNP	A	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr15:100996220A>T	uc002bvz.2	-	12	1379	c.877T>A	c.(877-879)TAT>AAT	p.Y293N	LASS3_uc002bwa.2_Missense_Mutation_p.Y304N|LASS3_uc002bwb.2_Missense_Mutation_p.Y293N	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	293	TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			TCGAGGTGATACATAGGCAAG	0.378													5	25					0	0	0.000602	0	0
SNX29	92017	broad.mit.edu	37	16	12571690	12571690	+	Missense_Mutation	SNP	C	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr16:12571690C>G	uc002dby.3	+	12	1053	c.997C>G	c.(997-999)CCA>GCA	p.P333A		NM_001080530	NP_001073999	Q8TEQ0	SNX29_HUMAN	sorting nexin 29	333	PX.				cell communication		phosphatidylinositol binding			ovary(1)	1						CTACAACTTCCCACCCAAAAA	0.438													6	36					0	0	0.001984	0	0
ADCY7	113	broad.mit.edu	37	16	50347883	50347883	+	Silent	SNP	C	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr16:50347883C>G	uc002egd.1	+	22	3034	c.2766C>G	c.(2764-2766)CCC>CCG	p.P922P		NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	922	Cytoplasmic (Potential).|Guanylate cyclase 2.				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	TACTGAAGCCCAAGTTCAGCG	0.617													14	73					0	0	0.002450	0	0
IRX6	79190	broad.mit.edu	37	16	55361633	55361633	+	Silent	SNP	C	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr16:55361633C>G	uc002ehy.2	+	4	1082	c.549C>G	c.(547-549)GCC>GCG	p.A183A	IRX6_uc002ehx.2_Silent_p.A183A|IRX6_uc010ccb.1_RNA	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	183	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						TCATGCTGGCCATCATCACCA	0.572													21	103					0	0	0.001523	0	0
HYDIN	54768	broad.mit.edu	37	16	70902514	70902514	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr16:70902514C>T	uc002ezr.2	-	66	11394	c.11266G>A	c.(11266-11268)GTA>ATA	p.V3756I	HYDIN_uc010cfy.2_5'Flank	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3757										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTCTGGGTACGTCCACCCAC	0.527													5	42					0	0	0.001984	0	0
ZNF276	92822	broad.mit.edu	37	16	89804475	89804475	+	Missense_Mutation	SNP	T	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr16:89804475T>A	uc002fos.3	+	11	1763	c.1666T>A	c.(1666-1668)TGT>AGT	p.C556S	ZNF276_uc010ciq.2_Missense_Mutation_p.C342S|ZNF276_uc002fop.2_3'UTR|ZNF276_uc002foq.3_Missense_Mutation_p.C481S|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_Missense_Mutation_p.C342S|ZNF276_uc010cis.2_Missense_Mutation_p.C315S|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_Missense_Mutation_p.C394S|ZNF276_uc010cit.1_3'UTR|FANCA_uc002fou.1_3'UTR|FANCA_uc010vpn.1_3'UTR	NM_001113525	NP_001106997	Q8N554	ZN276_HUMAN	zinc finger protein 276 isoform a	556	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		GGACTTTGCCTGTGACCAGTG	0.597													11	44					0	0	0.008291	0	0
USP6	9098	broad.mit.edu	37	17	5072170	5072170	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr17:5072170C>T	uc002gau.1	+	35	5567	c.3337C>T	c.(3337-3339)CGA>TGA	p.R1113*	USP6_uc002gav.1_Nonsense_Mutation_p.R1113*|USP6_uc010ckz.1_Nonsense_Mutation_p.R796*	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	1113					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						TTTGGTACCACGAGACCCGGC	0.473			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								43	211					0	0	0.002852	0	0
DLG4	1742	broad.mit.edu	37	17	7106755	7106755	+	Missense_Mutation	SNP	T	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr17:7106755T>G	uc002get.3	-	8	1823	c.622A>C	c.(622-624)AAG>CAG	p.K208Q	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Missense_Mutation_p.K105Q|DLG4_uc010cly.2_Missense_Mutation_p.K162Q|DLG4_uc010vto.1_Missense_Mutation_p.K205Q|DLG4_uc002geu.2_Missense_Mutation_p.K162Q	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	165	PDZ 2.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						TTAGGCCCCTTGATGAGCTTG	0.607													3	76					0	0	0.004672	0	0
YBX2	51087	broad.mit.edu	37	17	7193769	7193769	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr17:7193769C>T	uc002gfq.2	-	5	602	c.545G>A	c.(544-546)CGA>CAA	p.R182Q		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	182					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						GGGGATGAATCGGCGGGACTT	0.642													4	81					0	0	0.000602	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904175	21904175	+	RNA	SNP	T	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr17:21904175T>G	uc002gza.2	+	1		c.114T>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ggaagcagcgtggcatcccag	0													10	449					0	0	0.001368	0	0
MYO1D	4642	broad.mit.edu	37	17	31107759	31107759	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr17:31107759C>T	uc002hho.1	-	2	151	c.139G>A	c.(139-141)GTT>ATT	p.V47I	MYO1D_uc002hhp.1_Missense_Mutation_p.V47I|MYO1D_uc010wcb.1_Missense_Mutation_p.V47I	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	47	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			TTCACAGAAACGACGACTTCT	0.423													10	50					0	0	0.008291	0	0
CUEDC1	404093	broad.mit.edu	37	17	55946527	55946527	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr17:55946527G>A	uc002ivd.1	-	7	1615	c.896C>T	c.(895-897)TCT>TTT	p.S299F	CUEDC1_uc002ive.1_Missense_Mutation_p.S299F	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	299										skin(2)	2						GGCATCTTCAGACACAGCGGG	0.617													6	30					0	0	0.001984	0	0
CYP4F3	4051	broad.mit.edu	37	19	15763404	15763404	+	Missense_Mutation	SNP	A	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr19:15763404A>T	uc002nbj.2	+	8	994	c.944A>T	c.(943-945)GAT>GTT	p.D315V	CYP4F3_uc010xok.1_Missense_Mutation_p.D315V|CYP4F3_uc010xol.1_Missense_Mutation_p.D315V|CYP4F3_uc010xom.1_Missense_Mutation_p.D166V|CYP4F3_uc002nbk.2_Missense_Mutation_p.D315V|CYP4F3_uc010xon.1_Missense_Mutation_p.D25V	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	315					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						AAGTTGTCCGATGAGGACATA	0.522													9	260					0	0	0.008291	0	0
SRBD1	55133	broad.mit.edu	37	2	45616592	45616592	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:45616592G>A	uc002rus.2	-	21	2921	c.2845C>T	c.(2845-2847)CGA>TGA	p.R949*	SRBD1_uc010yoc.1_Nonsense_Mutation_p.R468*	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	949	S1 motif.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			GTTACATTTCGTATGGGAATC	0.433													15	65					0	0	0.003163	0	0
PPP3R1	5534	broad.mit.edu	37	2	68413615	68413615	+	Silent	SNP	A	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:68413615A>G	uc002sei.1	-	5	842	c.450T>C	c.(448-450)TTT>TTC	p.F150F		NM_000945	NP_000936	P63098	CANB1_HUMAN	protein phosphatase 3, regulatory subunit B,	150	EF-hand 4.|4.				activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals	calcineurin complex|cytosol	calcium ion binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding				0					Pimecrolimus(DB00337)	AGAATTCTTCAAAGGATATTC	0.333													14	93					0	0	0.004007	0	0
CHST10	9486	broad.mit.edu	37	2	101009737	101009737	+	Silent	SNP	C	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:101009737C>A	uc002tam.2	-	7	1400	c.1041G>T	c.(1039-1041)GGG>GGT	p.G347G		NM_004854	NP_004845	O43529	CHSTA_HUMAN	HNK-1 sulfotransferase	347	Lumenal (Potential).				carbohydrate biosynthetic process|cell adhesion	Golgi membrane|integral to membrane|membrane fraction				ovary(1)	1						GTTTCTGGTACCCAAAGAGCT	0.448													14	101					6.49762e-13	8.7825e-13	0.006122	1	0
IL1RL1	9173	broad.mit.edu	37	2	102957203	102957203	+	Silent	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:102957203C>T	uc002tbu.1	+	5	796	c.525C>T	c.(523-525)GAC>GAT	p.D175D	IL1RL1_uc010ywa.1_Silent_p.D58D|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Silent_p.D175D	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	175	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TGACTGAGGACGCAGGTGATT	0.423													21	89					0	0	0.002780	0	0
MYO7B	4648	broad.mit.edu	37	2	128341815	128341815	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:128341815C>T	uc002top.2	+	13	1515	c.1462C>T	c.(1462-1464)CAC>TAC	p.H488Y		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	488	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GGACTATATCCACTACACCGA	0.577													14	77					0	0	0.003163	0	0
LOC401010	401010	broad.mit.edu	37	2	132201922	132201922	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:132201922G>A	uc002tst.2	-	1	546	c.80C>T	c.(79-81)GCA>GTA	p.A27V		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						GGCCACAGCTGCTCCGAATGC	0.547													6	39					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179396156	179396156	+	Silent	SNP	A	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:179396156A>G	uc010zfg.1	-	307	97706	c.97482T>C	c.(97480-97482)TAT>TAC	p.Y32494Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.Y26189Y|TTN_uc010zfi.1_Silent_p.Y26122Y|TTN_uc010zfj.1_Silent_p.Y25997Y|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33421							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGAAACAGCATACGCCTCTG	0.473													33	120					0	0	0.002445	0	0
TTN	7273	broad.mit.edu	37	2	179585342	179585342	+	Missense_Mutation	SNP	C	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:179585342C>A	uc010zfg.1	-	77	19639	c.19415G>T	c.(19414-19416)GGT>GTT	p.G6472V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G3133V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7399							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACATCAGAACCTTTAAGAGC	0.393													5	34					2.0095e-06	2.62945e-06	0.001984	1	0
ZNF385B	151126	broad.mit.edu	37	2	180311412	180311412	+	Silent	SNP	T	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:180311412T>G	uc002unn.3	-	7	1360	c.756A>C	c.(754-756)ACA>ACC	p.T252T	ZNF385B_uc002unj.2_Silent_p.T150T|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Silent_p.T149T|ZNF385B_uc002unm.2_Silent_p.T176T	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	252						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			GTGGCAGGGGTGTTGTGCCAG	0.458													8	125					0	0	0.002299	0	0
PTH2R	5746	broad.mit.edu	37	2	209309554	209309554	+	Silent	SNP	C	A	A	rs143390240		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr2:209309554C>A	uc002vdb.2	+	7	1008	c.795C>A	c.(793-795)ATC>ATA	p.I265I	PTH2R_uc010zjb.1_Silent_p.I276I	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	265	Cytoplasmic (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		ATAATCTCATCTTTGTGGCTT	0.413													36	192					2.24893e-16	3.07354e-16	0.002222	1	0
TSHZ2	128553	broad.mit.edu	37	20	51872726	51872726	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr20:51872726C>T	uc002xwo.2	+	2	3685	c.2729C>T	c.(2728-2730)ACG>ATG	p.T910M		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	910	Homeobox; atypical.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CTTAGGAAAACGGGCGGGACA	0.488													7	65					0	0	0.004482	0	0
SCN10A	6336	broad.mit.edu	37	3	38755451	38755451	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr3:38755451G>A	uc003ciq.2	-	21	3802	c.3802C>T	c.(3802-3804)CGG>TGG	p.R1268W		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1268	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGACTTACCCGCATGCCTTCA	0.338													22	93					0	0	0.003330	0	0
SETD2	29072	broad.mit.edu	37	3	47098400	47098400	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr3:47098400G>A	uc003cqs.2	-	15	6927	c.6874C>T	c.(6874-6876)CAA>TAA	p.Q2292*	SETD2_uc003cqv.2_Nonsense_Mutation_p.Q2359*	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	2292	Gln-rich.|Low charge region.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		ATGGTTGCTTGAGACTGTGCA	0.463			N|F|S|Mis		clear cell renal carcinoma								14	87					0	0	0.001855	0	0
ERC2	26059	broad.mit.edu	37	3	56026258	56026258	+	Silent	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr3:56026258G>A	uc003dhr.1	-	11	2338	c.2082C>T	c.(2080-2082)GAC>GAT	p.D694D	ERC2_uc003dht.1_Silent_p.D177D	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	694	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TCATCCTGGAGTCATCTTCAA	0.428													33	185					0	0	0.006230	0	0
MORC1	27136	broad.mit.edu	37	3	108773665	108773665	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr3:108773665T>A	uc003dxl.2	-	14	1327	c.1240A>T	c.(1240-1242)AAA>TAA	p.K414*	MORC1_uc011bhn.1_Nonsense_Mutation_p.K414*	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	414					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						AATTCCTGTTTATTATGGGAT	0.383													18	72					0	0	0.008871	0	0
LOC348840	348840	broad.mit.edu	37	3	197803763	197803763	+	RNA	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr3:197803763G>A	uc003fyx.3	-	3		c.592C>T			LOC348840_uc010iat.2_RNA	NR_003291				Homo sapiens hypothetical protein LOC348840, mRNA (cDNA clone IMAGE:5167648), partial cds.												0						CAGTGTTGCCGTAGACATCCT	0.458													4	27					0	0	0.000248	0	0
TRIM60	166655	broad.mit.edu	37	4	165962269	165962269	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr4:165962269C>T	uc003iqy.1	+	3	1215	c.1045C>T	c.(1045-1047)CGA>TGA	p.R349*	TRIM60_uc010iqx.1_Nonsense_Mutation_p.R349*	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	349	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		TAGTTCTGGCCGACATTACTG	0.433													20	104					0	0	0.001882	0	0
PRLR	5618	broad.mit.edu	37	5	35065590	35065590	+	Silent	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr5:35065590C>T	uc003jjm.2	-	10	2000	c.1470G>A	c.(1468-1470)ACG>ACA	p.T490T	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Silent_p.T389T	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	490	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GCAGCCAGGGCGTATCCTGGT	0.483													25	121					0	0	0.003954	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166068	140166068	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr5:140166068C>T	uc003lhb.2	+	1	193	c.193C>T	c.(193-195)CGG>TGG	p.R65W	PCDHA1_uc003lha.2_Missense_Mutation_p.R65W|PCDHA1_uc003lgz.2_Missense_Mutation_p.R65W	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	65	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGCCTGTTCCGGGTGGCGTC	0.587													30	119					0	0	0.002096	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176926	140176926	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr5:140176926T>C	uc003lhd.2	+	1	2483	c.2377T>C	c.(2377-2379)TAC>CAC	p.Y793H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.Y793H|PCDHA2_uc011czy.1_Missense_Mutation_p.Y793H	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	793	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAATCAGAATACGTAGGAAA	0.403													14	48					0	0	0.001855	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182210	140182210	+	Silent	SNP	G	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr5:140182210G>T	uc003lhf.2	+	1	1428	c.1428G>T	c.(1426-1428)ACG>ACT	p.T476T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.T476T	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	476	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACATCTTCACGGTGTCTGCGC	0.667													5	220					1.08611e-07	1.43647e-07	0.000978	1	0
PCDHGA4	56111	broad.mit.edu	37	5	140736510	140736510	+	Silent	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr5:140736510C>T	uc003ljq.1	+	1	1743	c.1743C>T	c.(1741-1743)TCC>TCT	p.S581S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Silent_p.S581S	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	581	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCCCGCTCCGCAGATTCCG	0.592													38	192					0	0	0.006230	0	0
RARS	5917	broad.mit.edu	37	5	167921621	167921621	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr5:167921621G>A	uc003lzx.2	+	5	586	c.545G>A	c.(544-546)GGA>GAA	p.G182E	RARS_uc011deo.1_5'UTR	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	182					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		CTAGTGAATGGAGTTCAACTA	0.303													14	87					0	0	0.004007	0	0
FARS2	10667	broad.mit.edu	37	6	5431389	5431389	+	Silent	SNP	A	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr6:5431389A>G	uc010jnv.1	+	4	1224	c.888A>G	c.(886-888)CAA>CAG	p.Q296Q	FARS2_uc003mwr.2_Silent_p.Q296Q|FARS2_uc003mws.1_Silent_p.Q296Q	NM_006567	NP_006558	O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2 precursor	296					phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	TGATGGAACAACAACTGGTCA	0.458													20	112					0	0	0.008871	0	0
C2	717	broad.mit.edu	37	6	31912793	31912793	+	Missense_Mutation	SNP	T	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr6:31912793T>A	uc003nyf.2	+	17	2330	c.2066T>A	c.(2065-2067)TTC>TAC	p.F689Y	C2_uc011doo.1_Missense_Mutation_p.F443Y|C2_uc011dop.1_Missense_Mutation_p.F475Y|C2_uc010jtk.2_Missense_Mutation_p.F557Y|C2_uc011doq.1_Missense_Mutation_p.F660Y|C2_uc003nyg.2_Missense_Mutation_p.F466Y|CFB_uc011dor.1_Intron|C2_uc003nyh.1_Intron|CFB_uc011dos.1_5'Flank|CFB_uc003nyi.2_5'Flank|CFB_uc003nyj.3_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	689	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		GAGCGGAGATTCAGGTTTTTT	0.547													38	152					0	0	0.006999	0	0
SPDEF	25803	broad.mit.edu	37	6	34508917	34508917	+	Silent	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr6:34508917G>A	uc003ojq.1	-	3	893	c.478C>T	c.(478-480)CTG>TTG	p.L160L	SPDEF_uc011dsq.1_Silent_p.L160L	NM_012391	NP_036523	O95238	SPDEF_HUMAN	SAM pointed domain containing ets transcription	160	PNT.				negative regulation of survival gene product expression|negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(3)|ovary(1)|central_nervous_system(1)	5						TCTGTCCACAGGAGCCACTTC	0.642													7	9					0	0	0.004482	0	0
TDRD6	221400	broad.mit.edu	37	6	46655895	46655895	+	Silent	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr6:46655895G>A	uc003oyj.2	+	1	30	c.30G>A	c.(28-30)CCG>CCA	p.P10P	TDRD6_uc010jze.2_Silent_p.P4P	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	10					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			TGCCGGCGCCGGGGGCCTCGC	0.721													3	7					0	0	0.004672	0	0
DSE	29940	broad.mit.edu	37	6	116758080	116758080	+	Missense_Mutation	SNP	A	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr6:116758080A>C	uc003pws.2	+	6	2643	c.2449A>C	c.(2449-2451)AAA>CAA	p.K817Q	DSE_uc011ebg.1_Missense_Mutation_p.K836Q|DSE_uc003pwt.2_Missense_Mutation_p.K817Q|DSE_uc003pwu.2_Missense_Mutation_p.K484Q	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	817					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		CAAACGCTATAAATTTGTGGA	0.423													8	48					0	0	0.003080	0	0
ABCA13	154664	broad.mit.edu	37	7	48320993	48320993	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr7:48320993T>C	uc003toq.2	+	19	8805	c.8780T>C	c.(8779-8781)ATG>ACG	p.M2927T	ABCA13_uc010kys.1_Missense_Mutation_p.M1T	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2927					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TCAGAAGCCATGGAGATGCTG	0.438													4	25					0	0	0.000248	0	0
COBL	23242	broad.mit.edu	37	7	51096966	51096966	+	Silent	SNP	T	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr7:51096966T>C	uc003tpr.3	-	10	2012	c.1827A>G	c.(1825-1827)AAA>AAG	p.K609K	COBL_uc003tps.2_Silent_p.K666K|COBL_uc011kcl.1_Silent_p.K609K|COBL_uc003tpp.3_Silent_p.K395K|COBL_uc003tpq.3_Silent_p.K550K|COBL_uc003tpo.3_Silent_p.K151K	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	609										skin(3)|ovary(2)	5	Glioma(55;0.08)					CACGGATTCCTTTTCCGACGT	0.537													3	112					0	0	0.000248	0	0
MUC17	140453	broad.mit.edu	37	7	100679593	100679593	+	Silent	SNP	A	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr7:100679593A>G	uc003uxp.1	+	3	4949	c.4896A>G	c.(4894-4896)CTA>CTG	p.L1632L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1632	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|25.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGTCCTCTATTAACAAGTA	0.493													64	557					0	0	0.003610	0	0
MLL5	55904	broad.mit.edu	37	7	104753522	104753522	+	Silent	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr7:104753522G>A	uc003vcm.2	+	27	5853	c.5319G>A	c.(5317-5319)CCG>CCA	p.P1773P	MLL5_uc010ljc.2_Silent_p.P1773P|MLL5_uc010ljf.1_Intron|MLL5_uc010ljg.2_Silent_p.P507P	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	1773	Pro-rich.				cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						CTTTGGGACCGGGACCCCAGC	0.532													40	206					0	0	0.002852	0	0
FLNC	2318	broad.mit.edu	37	7	128489530	128489530	+	Silent	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr7:128489530C>T	uc003vnz.3	+	30	5306	c.5097C>T	c.(5095-5097)GAC>GAT	p.D1699D	FLNC_uc003voa.3_Silent_p.D1699D	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1699	Filamin 15.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						AGAACCATGACGGTACCTTTG	0.612													10	88					0	0	0.000978	0	0
TSPAN33	340348	broad.mit.edu	37	7	128802337	128802337	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr7:128802337G>A	uc003vop.1	+	3	492	c.263G>A	c.(262-264)CGC>CAC	p.R88H		NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	tetraspanin 33	88	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						GGGTCCCTCCGCGAGAACATC	0.627													6	47					0	0	0.003080	0	0
DENND3	22898	broad.mit.edu	37	8	142176321	142176321	+	Missense_Mutation	SNP	C	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr8:142176321C>G	uc003yvy.2	+	12	1624	c.1346C>G	c.(1345-1347)CCG>CGG	p.P449R	DENND3_uc010mep.2_Missense_Mutation_p.P410R|DENND3_uc003yvz.1_Missense_Mutation_p.P133R	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	449										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CCAAGGAGACCGACCGTTGAG	0.483													6	257					0	0	0.001168	0	0
TLN1	7094	broad.mit.edu	37	9	35717307	35717307	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr9:35717307C>T	uc003zxt.2	-	19	2648	c.2294G>A	c.(2293-2295)CGA>CAA	p.R765Q		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	765					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TCCTACCCCTCGCAACAGTTG	0.617													29	108					0	0	0.002096	0	0
ANXA1	301	broad.mit.edu	37	9	75783993	75783993	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr9:75783993C>T	uc004ajf.1	+	12	981	c.907C>T	c.(907-909)CGT>TGT	p.R303C	ANXA1_uc004aje.1_Missense_Mutation_p.R303C|ANXA1_uc004ajg.1_Missense_Mutation_p.R303C	NM_000700	NP_000691	P04083	ANXA1_HUMAN	annexin I	303	Annexin 4.				alpha-beta T cell differentiation|anti-apoptosis|cell surface receptor linked signaling pathway|cellular component movement|inflammatory response|keratinocyte differentiation|lipid metabolic process|peptide cross-linking|positive regulation of vesicle fusion	basolateral plasma membrane|cilium|cornified envelope|cytoplasm|extracellular region|nucleus	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity|protein binding, bridging|receptor binding|structural molecule activity			breast(1)|central_nervous_system(1)	2		all_epithelial(88;2.54e-11)		OV - Ovarian serous cystadenocarcinoma(323;2.82e-06)|GBM - Glioblastoma multiforme(74;0.0325)	Alclometasone(DB00240)|Amcinonide(DB00288)|Beclomethasone(DB00394)|Betamethasone(DB00443)|Clobetasol(DB01013)|Clocortolone(DB00838)|Desonide(DB01260)|Desoximetasone(DB00547)|Dexamethasone(DB01234)|Diflorasone(DB00223)|Flumethasone Pivalate(DB00663)|Halobetasol Propionate(DB00596)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mometasone(DB00764)|Prednicarbate(DB01130)|Prednisone(DB00635)|Rimexolone(DB00896)|Triamcinolone(DB00620)	TATGGTTTCCCGTTCTGAAAT	0.388													29	126					0	0	0.006320	0	0
NIPSNAP3A	25934	broad.mit.edu	37	9	107513272	107513272	+	Silent	SNP	C	T	T	rs146388542	byFrequency	TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr9:107513272C>T	uc004bch.1	+	2	201	c.96C>T	c.(94-96)TAC>TAT	p.Y32Y	NIPSNAP3A_uc011lvt.1_Silent_p.Y32Y|NIPSNAP3A_uc011lvu.1_Silent_p.Y32Y	NM_015469	NP_056284	Q9UFN0	NPS3A_HUMAN	nipsnap homolog 3A	32						cytosol					0						CCAGACAATACGATGGAATAT	0.363													15	90					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	9	114371450	114371450	+	RNA	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr9:114371450G>A	uc004bfk.3	-	2		c.350C>T								Homo sapiens chromosome 9 open reading frame 29, mRNA (cDNA clone MGC:39589 IMAGE:4838739), complete cds.																		AGTGCAGTCCGTCTTCAAGGT	0.493													42	163					0	0	0.003610	0	0
GRPR	2925	broad.mit.edu	37	X	16168588	16168588	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:16168588A>G	uc004cxj.2	+	2	1227	c.574A>G	c.(574-576)ACC>GCC	p.T192A		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	192	Extracellular (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					CACCAACCAGACCTTCATTAG	0.502													35	141					0	0	0.006230	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29972757	29972757	+	Missense_Mutation	SNP	G	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:29972757G>T	uc004dby.2	+	10	1828	c.1320G>T	c.(1318-1320)AAG>AAT	p.K440N		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	440	Cytoplasmic (Potential).|TIR.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity	p.K440K(1)		ovary(3)|lung(1)|pancreas(1)	5						TGCTTGAAAAGCATTATGGAT	0.373													14	74					0.00316338	0.00397036	0.003163	1	0
TMEM47	83604	broad.mit.edu	37	X	34648526	34648526	+	Missense_Mutation	SNP	G	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:34648526G>T	uc004ddh.2	-	3	709	c.450C>A	c.(448-450)AAC>AAA	p.N150K	TMEM47_uc010ngs.2_RNA	NM_031442	NP_113630	Q9BQJ4	TMM47_HUMAN	transmembrane protein 47	150						integral to membrane				lung(1)	1						CATAACCCCAGTTGAACTCAT	0.428													21	115					3.62473e-10	4.84611e-10	0.001882	1	0
FAM47B	170062	broad.mit.edu	37	X	34962764	34962764	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:34962764G>A	uc004ddi.1	+	1	1834	c.1816G>A	c.(1816-1818)GTC>ATC	p.V606I		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	606										ovary(3)|breast(1)	4						AATGCCTGGCGTCATTGAAAA	0.438													51	233					0	0	0.003610	0	0
ITIH5L	347365	broad.mit.edu	37	X	54776462	54776462	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:54776462C>T	uc004dtj.2	-	13	3838	c.3808G>A	c.(3808-3810)GTG>ATG	p.V1270M		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	1270					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						ATCACAGGCACATCTGGGCCA	0.597													14	51					0	0	0.004007	0	0
ITIH5L	347365	broad.mit.edu	37	X	54785300	54785300	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:54785300C>T	uc004dtj.2	-	8	1237	c.1207G>A	c.(1207-1209)GGC>AGC	p.G403S		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	403	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						GTCGTCACGCCGGCCGTGGGC	0.597													12	33					0	0	0.001368	0	0
MAGEE2	139599	broad.mit.edu	37	X	75003755	75003755	+	Missense_Mutation	SNP	A	C	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:75003755A>C	uc004ecj.1	-	1	1317	c.1132T>G	c.(1132-1134)TAC>GAC	p.Y378D		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	378	MAGE 2.									ovary(1)|skin(1)	2						ACAAGGAGGTAGATGTGCTCA	0.433													24	157					0	0	0.002299	0	0
PLXNA3	55558	broad.mit.edu	37	X	153698493	153698493	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:153698493C>T	uc004flm.2	+	29	5142	c.4969C>T	c.(4969-4971)CGG>TGG	p.R1657W		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1657	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTACCTGACACGGCTGCTGGC	0.617													9	48					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	X	155254994	155254994	+	Silent	SNP	G	A	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:155254994G>A	uc004fnx.3	+	9	1204	c.750G>A	c.(748-750)CCG>CCA	p.P250P		NM_182905	NP_878908			WAS protein family homolog 1																		TGCCCCCACCGCAACAGCCAC	0.637													4	26					0	0	0.000248	0	0
TNFRSF9	3604	broad.mit.edu	37	1	7980912	7980914	+	In_Frame_Del	DEL	CTT	-	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr1:7980912_7980914delCTT	uc001aot.2	-	8	877_879	c.749_751delAAG	c.(748-753)GAAGGA>GGA	p.E250del		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	250	Cytoplasmic (Potential).|Interaction with LRR-1.		E -> G (in a colorectal cancer sample; somatic mutation).		induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity	p.E250G(1)		large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		TCACATCCTCCTTCTTCTTCTTC	0.379													7	264	---	---	---	---					
C11orf17	56672	broad.mit.edu	37	11	8940912	8940912	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr11:8940912delT	uc001mgx.2	+	6	594	c.518delT	c.(517-519)ATAfs	p.I173fs	C11orf17_uc001mgz.2_Frame_Shift_Del_p.I146fs|C11orf17_uc001mgy.2_Frame_Shift_Del_p.I146fs|C11orf17_uc001mha.2_Frame_Shift_Del_p.I173fs	NM_020642	NP_065693	Q9NQ31	AKIP1_HUMAN	chromosome 11 open reading frame 17	173						nucleus	protein binding				0				Epithelial(150;5.08e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0243)		GACCTCTACATAGAAGTATAT	0.468													30	118	---	---	---	---					
PHF21A	51317	broad.mit.edu	37	11	46098353	46098356	+	Frame_Shift_Del	DEL	TTTC	-	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr11:46098353_46098356delTTTC	uc001ncc.3	-	5	726_729	c.102_105delGAAA	c.(100-105)AAGAAAfs	p.K34fs	PHF21A_uc001ncb.3_Frame_Shift_Del_p.K34fs|PHF21A_uc009ykx.2_Frame_Shift_Del_p.K34fs|PHF21A_uc001nce.2_Frame_Shift_Del_p.K34fs	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	34_35	Gln-rich.				blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						CATGAAGCTGTTTCTTTAAGTCAG	0.368													10	82	---	---	---	---					
CRYL1	51084	broad.mit.edu	37	13	21013857	21013859	+	In_Frame_Del	DEL	TCT	-	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr13:21013857_21013859delTCT	uc001une.2	-	4	390_392	c.311_313delAGA	c.(310-315)AAGATT>ATT	p.K104del	CRYL1_uc001unf.2_In_Frame_Del_p.K82del|CRYL1_uc001ung.2_In_Frame_Del_p.K82del|CRYL1_uc010tcp.1_5'UTR	NM_015974	NP_057058	Q9Y2S2	CRYL1_HUMAN	lambda-crystallin	104					fatty acid metabolic process	cytosol	3-hydroxyacyl-CoA dehydrogenase activity|L-gulonate 3-dehydrogenase activity|NAD+ binding|protein homodimerization activity				0		all_cancers(29;2.27e-23)|all_epithelial(30;1.69e-19)|all_lung(29;8.29e-18)|Lung SC(185;0.0262)|Ovarian(182;0.0827)|Hepatocellular(188;0.244)		all cancers(112;6.6e-05)|Epithelial(112;0.00178)|OV - Ovarian serous cystadenocarcinoma(117;0.0169)|Lung(94;0.0215)|GBM - Glioblastoma multiforme(144;0.0402)|LUSC - Lung squamous cell carcinoma(192;0.061)		TGAGCAAAAATCTTCTTCTTCAG	0.419													12	67	---	---	---	---					
RB1	5925	broad.mit.edu	37	13	48955530	48955533	+	Frame_Shift_Del	DEL	ATTT	-	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr13:48955530_48955533delATTT	uc001vcb.2	+	17	1812_1815	c.1646_1649delATTT	c.(1645-1650)CATTTAfs	p.H549fs		NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1	549_550	Domain A.|Pocket; binds T and E1A.				androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(7)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ATGATAAAACATTTAGAACGATGT	0.328		6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			9	36	---	---	---	---					
MUC20	200958	broad.mit.edu	37	3	195447912	195447914	+	In_Frame_Del	DEL	TTC	-	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chr3:195447912_195447914delTTC	uc010hzo.2	+	1	160_162	c.34_36delTTC	c.(34-36)TTCdel	p.F14del		NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	14					protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		TCTGCCCCTTTTCTTCTTCTGCT	0.611													5	4	---	---	---	---					
F8	2157	broad.mit.edu	37	X	154159063	154159063	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	g.chrX:154159063delG	uc004fmt.2	-	14	3173	c.3002delC	c.(3001-3003)GCTfs	p.A1001fs		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1001	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AGTCAACAAAGCAGGTCCATG	0.343													26	135	---	---	---	---					
