Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
INSRR	3645	broad.mit.edu	37	1	156823629	156823629	+	Silent	SNP	C	T	T			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr1:156823629C>T	uc010pht.1	-	2	806	c.552G>A	c.(550-552)CTG>CTA	p.L184L	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Silent_p.L184L	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	184					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CAGCAGCACCCAGCACACCAG	0.637													27	40					0	0	1	0	0
CD244	51744	broad.mit.edu	37	1	160811160	160811160	+	Silent	SNP	G	A	A			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr1:160811160G>A	uc009wtq.2	-	3	688	c.510C>T	c.(508-510)TAC>TAT	p.Y170Y	CD244_uc001fxa.2_Silent_p.Y165Y|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Intron|CD244_uc010pjt.1_RNA	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	170	Extracellular (Potential).|Ig-like 2.				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TGCTCCCTCTGTACCAAGCAT	0.547													64	121					0	0	1	0	0
PWWP2B	170394	broad.mit.edu	37	10	134218293	134218293	+	Missense_Mutation	SNP	A	C	C			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr10:134218293A>C	uc001lll.3	+	2	318	c.289A>C	c.(289-291)ACC>CCC	p.T97P	PWWP2B_uc009ybe.2_Missense_Mutation_p.T97P	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	97	Pro-rich.										0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		CCCCGAGACCACCCGCCCCGA	0.756													4	15					0	0	1	0	0
NLRP6	171389	broad.mit.edu	37	11	281566	281566	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr11:281566A>G	uc010qvs.1	+	4	1832	c.1832A>G	c.(1831-1833)GAG>GGG	p.E611G	NLRP6_uc010qvt.1_Missense_Mutation_p.E611G	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	611	Poly-Glu.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		GAGGAGGAGGAGGGAGAGGAG	0.662													3	181					0	0	1	0	0
DCP1B	196513	broad.mit.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr12:2062350C>G	uc001qjx.1	-	7	836	c.756G>C	c.(754-756)CAG>CAC	p.Q252H	DCP1B_uc010sdy.1_Missense_Mutation_p.Q150H	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	252	Poly-Gln.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			gctgctgctgctgGTGGAGAG	0.458													3	42					0	0	1	0	0
LOC653113	653113	broad.mit.edu	37	12	8385092	8385092	+	RNA	SNP	G	A	A			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr12:8385092G>A	uc010sgk.1	-	5		c.696C>T				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						CGTTAGAGTCGTGTGTGAGTC	0.443													4	139					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506566	11506566	+	Silent	SNP	C	T	T			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr12:11506566C>T	uc001qzw.1	-	4	508	c.471G>A	c.(469-471)AAG>AAA	p.K157K	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	218	9.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GTCCTTGTGGCTTTCCTGGAG	0.597													4	164					0	0	1	0	0
DACH1	1602	broad.mit.edu	37	13	72440212	72440212	+	Silent	SNP	G	A	A			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr13:72440212G>A	uc010thn.1	-	2	1113	c.690C>T	c.(688-690)TAC>TAT	p.Y230Y	DACH1_uc010tho.1_Silent_p.Y230Y|DACH1_uc010thp.1_Silent_p.Y230Y	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	230	Interaction with SIX6 and HDAC3 (By similarity).|DACHbox-N.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		TCAGCTTGGTGTAGACCGTAT	0.607													4	157					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107062535	107062535	+	RNA	SNP	C	G	G			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr14:107062535C>G	uc010tyt.1	-	130		c.6143G>C								Parts of antibodies, mostly variable regions.												0						CTGCCACCAGCAGGAGGAAGA	0.512													4	47					0	0	1	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904125	21904125	+	RNA	SNP	G	A	A			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr17:21904125G>A	uc002gza.2	+	1		c.64G>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ggagtcgcaaggggccgagca	0													4	118					0	0	1	0	0
ZNF91	7644	broad.mit.edu	37	19	23544867	23544867	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr19:23544867T>C	uc002nre.2	-	4	1027	c.914A>G	c.(913-915)CAT>CGT	p.H305R	ZNF91_uc010xrj.1_Missense_Mutation_p.H273R	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	305	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAATGGCTAAAAGC	0.413													5	80					0	0	1	0	0
PRR12	57479	broad.mit.edu	37	19	50105084	50105084	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr19:50105084C>T	uc002poo.3	+	6	4682	c.4682C>T	c.(4681-4683)ACG>ATG	p.T1561M		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	740							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		TGTGGGGAGACGGACGAGGAG	0.682													16	29					0	0	1	0	0
C20orf54	113278	broad.mit.edu	37	20	745936	745936	+	Silent	SNP	G	A	A	rs113754514		TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr20:745936G>A	uc002wed.3	-	2	822	c.483C>T	c.(481-483)TCC>TCT	p.S161S	C20orf54_uc002wee.2_Silent_p.S161S	NM_033409	NP_212134	Q9NQ40	RFT2_HUMAN	hypothetical protein LOC113278 precursor	161					sensory perception of sound	integral to plasma membrane	riboflavin transporter activity			ovary(2)	2						TAGTGAGACCGGAGCCCTGGG	0.602													3	106					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	11014987	11014987	+	RNA	SNP	A	G	G			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr21:11014987A>G	uc002yis.1	-	7		c.1459T>C						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTATAGTTTCAATAGCAGACT	0.388													2	16					0	0	1	0	0
TBCCD1	55171	broad.mit.edu	37	3	186268998	186268998	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr3:186268998G>A	uc003fqg.2	-	7	1744	c.1615C>T	c.(1615-1617)CGC>TGC	p.R539C	TBCCD1_uc011bry.1_Missense_Mutation_p.R539C|TBCCD1_uc003fqh.2_Missense_Mutation_p.R443C	NM_018138	NP_060608	Q9NVR7	TBCC1_HUMAN	TBCC domain containing 1	539					cell morphogenesis|maintenance of centrosome location|maintenance of Golgi location|regulation of cell migration|regulation of cell shape	spindle pole centrosome	binding			large_intestine(1)|ovary(1)	2	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.3e-21)	GBM - Glioblastoma multiforme(93;0.0474)		AGCTGTTGGCGATGTCCTGTA	0.428													3	81					0	0	1	0	0
PLRG1	5356	broad.mit.edu	37	4	155459182	155459182	+	Silent	SNP	G	A	A	rs146078897		TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr4:155459182G>A	uc003iny.2	-	13	1293	c.1230C>T	c.(1228-1230)TCC>TCT	p.S410S	PLRG1_uc003inz.2_Silent_p.S401S	NM_002669	NP_002660	O43660	PLRG1_HUMAN	pleiotropic regulator 1 (PRL1 homolog,	410	WD 5.					catalytic step 2 spliceosome|nuclear speck	protein binding|signal transducer activity|transcription corepressor activity				0	all_hematologic(180;0.215)	Renal(120;0.0854)				CATTATGACCGGAAAGATTTT	0.303													3	102					0	0	1	0	0
LOC100132832	100132832	broad.mit.edu	37	7	76681226	76681226	+	RNA	SNP	G	C	C			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr7:76681226G>C	uc003ufy.2	+	5		c.1203G>C				NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						TGTCACACTTGAAGGAGGCAG	0.453													2	4					0	0	1	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070969	141070969	+	Silent	SNP	A	G	G			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr9:141070969A>G	uc004com.2	+	4	633	c.372A>G	c.(370-372)GCA>GCG	p.A124A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TAGAAAACGCAGATGAGACCT	0.517													4	43					0	0	1	0	0
SEPT6	23157	broad.mit.edu	37	X	118771068	118771068	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chrX:118771068C>T	uc004erv.2	-	7	1143	c.878G>A	c.(877-879)CGG>CAG	p.R293Q	SEPT6_uc010nqk.2_Intron|SEPT6_uc004ers.2_Missense_Mutation_p.R293Q|SEPT6_uc004ert.2_Missense_Mutation_p.R293Q|SEPT6_uc004eru.2_Missense_Mutation_p.R293Q|SEPT6_uc004erw.2_Missense_Mutation_p.R235Q|SEPT6_uc011mtv.1_Missense_Mutation_p.R235Q|SEPT6_uc011mtw.1_Missense_Mutation_p.R323Q	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	293					cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						CTCATAGTGCCGGGTGTGGGT	0.547													7	174					0	0	1	0	0
MESP2	145873	broad.mit.edu	37	15	90320135	90320146	+	In_Frame_Del	DEL	GGGCAGGGGCAG	-	-	rs56192595		TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr15:90320135_90320146delGGGCAGGGGCAG	uc002bon.2	+	1	547_558	c.547_558delGGGCAGGGGCAG	c.(547-558)GGGCAGGGGCAGdel	p.GQGQ199del	MESP2_uc010uqa.1_Intron	NM_001039958	NP_001035047	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog	199_202	13 X 2 AA tandem repeats of G-Q.|12.			Missing (in Ref. 2; AAI11414).	Notch signaling pathway	nucleus	DNA binding				0	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			gcaggggcaagggcaggggcaggggcaggggc	0.462													4	3	---	---	---	---					
LRRK1	79705	broad.mit.edu	37	15	101514014	101514014	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr15:101514014delG	uc002bwr.2	+	3	422	c.103delG	c.(103-105)GGGfs	p.G35fs	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bwq.1_Frame_Shift_Del_p.G35fs	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	35					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CGCAGGTGCCGGGGACACGGG	0.741													2	4	---	---	---	---					
SIPA1L3	23094	broad.mit.edu	37	19	38572367	38572368	+	In_Frame_Ins	INS	-	GCCACC	GCCACC			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr19:38572367_38572368insGCCACC	uc002ohk.2	+	3	671_672	c.162_163insGCCACC	c.(160-165)insGCCACC	p.64_65insAT		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	64_65					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GCGAGAGCCCGgccaccgccac	0.584													5	11	---	---	---	---					
PCDHGB4	8641	broad.mit.edu	37	5	140767492	140767497	+	In_Frame_Del	DEL	TGCCAG	-	-			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr5:140767492_140767497delTGCCAG	uc003lkc.1	+	1	41_46	c.41_46delTGCCAG	c.(40-48)CTGCCAGTG>CTG	p.PV15del	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_In_Frame_Del_p.PV15del	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	15_16					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTGAGAGGCTGCCAGTGCTCTTTCT	0.617											OREG0016859	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	8	---	---	---	---					
TIMD4	91937	broad.mit.edu	37	5	156378745	156378747	+	In_Frame_Del	DEL	TTG	-	-			TCGA-HT-7680-01A-11D-2253-08	TCGA-HT-7680-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ad1dd18-303c-4f67-ac35-4ab89739f2bd	58445e52-52f3-46b7-ad9e-545dc18f369f	g.chr5:156378745_156378747delTTG	uc003lwh.2	-	3	512_514	c.455_457delCAA	c.(454-459)ACAAGC>AGC	p.T152del	TIMD4_uc010jii.2_In_Frame_Del_p.T152del	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	152	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGGTGGGGCTTGTTGTTGTTGT	0.537													8	415	---	---	---	---					
