Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MAST2	23139	broad.mit.edu	37	1	46497240	46497240	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr1:46497240C>A	uc001cov.2	+	24	3453	c.3170C>A	c.(3169-3171)TCA>TAA	p.S1057*	MAST2_uc001cow.2_Nonsense_Mutation_p.S1057*|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1057					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					ACAGCCCTCTCACTCCTCATT	0.607000													3	42					0.00909568	0.00909568	1	1	0
GBP5	115362	broad.mit.edu	37	1	89730624	89730624	+	Silent	SNP	A	G	G			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr1:89730624A>G	uc001dnc.2	-	8	1431	c.894T>C	c.(892-894)TAT>TAC	p.Y298Y	GBP5_uc001dnd.2_Silent_p.Y298Y|GBP5_uc001dne.1_Silent_p.Y298Y	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	298						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		TGGCATTGACATAGGTCAGCA	0.448000													31	18					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186276231	186276231	+	Silent	SNP	A	C	C			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr1:186276231A>C	uc001gru.3	+	7	1431	c.1380A>C	c.(1378-1380)ACA>ACC	p.T460T	PRG4_uc001grt.3_Silent_p.T419T|PRG4_uc009wyl.2_Silent_p.T367T|PRG4_uc009wym.2_Silent_p.T326T|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	460	15.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AGGAGCCTACACCCACCACTC	0.652000													5	55					0	0	1	0	0
SPATA5L1	79029	broad.mit.edu	37	15	45713342	45713342	+	Silent	SNP	C	T	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr15:45713342C>T	uc001zve.2	+	8	2305	c.2196C>T	c.(2194-2196)TGC>TGT	p.C732C	SPATA5L1_uc001zvf.2_RNA	NM_024063	NP_076968	Q9BVQ7	SPA5L_HUMAN	spermatogenesis associated 5-like 1	732						cytoplasm	ATP binding|nucleoside-triphosphatase activity			ovary(3)|skin(1)	4		Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;7.31e-17)|GBM - Glioblastoma multiforme(94;6.28e-07)		CGTTAAGTTGCAAGGACTTGG	0.353000													7	22					0	0	1	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29897045	29897045	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr16:29897045G>A	uc002duq.3	-	8	1474	c.1234C>T	c.(1234-1236)CCC>TCC	p.P412S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.P342S|SEZ6L2_uc002dur.3_Missense_Mutation_p.P342S|SEZ6L2_uc002dus.3_Missense_Mutation_p.P298S|SEZ6L2_uc010vec.1_Missense_Mutation_p.P412S|SEZ6L2_uc010ved.1_Missense_Mutation_p.P368S	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	412	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GGGGATAGGGGGCTGCCCCCT	0.602000													16	74					0	0	1	0	0
RLTPR	146206	broad.mit.edu	37	16	67688719	67688719	+	Silent	SNP	A	G	G			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr16:67688719A>G	uc002etn.2	+	32	3741	c.3621A>G	c.(3619-3621)CCA>CCG	p.P1207P	RLTPR_uc010vjr.1_Silent_p.P1171P	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	1207										breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		AACTGGCTCCATCCTTTGAAC	0.622000													54	154					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10533673	10533673	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr17:10533673G>A	uc002gmq.1	-	36	5466	c.5389C>T	c.(5389-5391)CGT>TGT	p.R1797C		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1797	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TCATCTAGACGATGCTGCAGG	0.607000													17	157					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62043903	62043903	+	Silent	SNP	C	T	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr17:62043903C>T	uc002jds.1	-	7	1115	c.1038G>A	c.(1036-1038)GGG>GGA	p.G346G		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	346	I.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	AGTAGAAGTTCCCTTTGGGAG	0.582000													8	39					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42798840	42798840	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr19:42798840G>A	uc002otf.1	+	19	4452	c.4412G>A	c.(4411-4413)CGG>CAG	p.R1471Q		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1471					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GACCAGCGCCGGGCCCTGGTC	0.612000			T	DUX4	soft tissue sarcoma								17	67					0	0	1	0	0
ASXL2	55252	broad.mit.edu	37	2	25972673	25972673	+	Silent	SNP	C	T	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr2:25972673C>T	uc002rgs.2	-	11	1973	c.1752G>A	c.(1750-1752)AGG>AGA	p.R584R	ASXL2_uc002rgt.1_Silent_p.R324R	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	584					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGACACGTGGCCTCTTCTCCC	0.532000													9	28					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26688556	26688556	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr2:26688556C>T	uc002rhk.2	-	38	4910	c.4783G>A	c.(4783-4785)GCC>ACC	p.A1595T	OTOF_uc010yla.1_Missense_Mutation_p.A325T|OTOF_uc002rhh.2_Missense_Mutation_p.A828T|OTOF_uc002rhi.2_Missense_Mutation_p.A905T|OTOF_uc002rhj.2_Missense_Mutation_p.A828T	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1595	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAGGTCTGGGCGATGCCGCAG	0.582000													5	131					0	0	1	0	0
HEATR5B	54497	broad.mit.edu	37	2	37268386	37268386	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr2:37268386G>C	uc002rpp.1	-	19	2842	c.2746C>G	c.(2746-2748)CTT>GTT	p.L916V		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	916							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				AAACAACCAAGAGCCAATGAA	0.418000													32	56					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100175384	100175384	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr2:100175384T>C	uc002tag.2	-	21	3474	c.3238A>G	c.(3238-3240)AGG>GGG	p.R1080G	AFF3_uc002taf.2_Missense_Mutation_p.R1105G	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1080					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GCGTGGTCCCTTTTGAGTCGA	0.483000											OREG0014830	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	92					0	0	1	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131797874	131797874	+	Missense_Mutation	SNP	G	A	A	rs117266463	by1000genomes	TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr2:131797874G>A	uc002tsa.1	+	8	1485	c.965G>A	c.(964-966)AGC>AAC	p.S322N	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Missense_Mutation_p.S322N|ARHGEF4_uc010fmx.1_Intron|ARHGEF4_uc002tsc.1_5'UTR	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	322	DH.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		GACATGTTCAGCGAGGAGCAG	0.682000													3	47					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								23	44					0	0	1	0	0
WFDC10A	140832	broad.mit.edu	37	20	44258532	44258532	+	Missense_Mutation	SNP	A	T	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr20:44258532A>T	uc002xoz.2	+	1	148	c.80A>T	c.(79-81)AAG>ATG	p.K27M	WFDC9_uc002xoy.2_Intron	NM_080753	NP_542791	Q9H1F0	WF10A_HUMAN	WAP four-disulfide core domain 10A precursor	27						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CGTGACAAGAAGAGGATGCAG	0.587000											OREG0025983	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	68					0	0	1	0	0
C1QTNF6	114904	broad.mit.edu	37	22	37578623	37578623	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr22:37578623C>T	uc003aqw.1	-	2	890	c.385G>A	c.(385-387)GTG>ATG	p.V129M	C1QTNF6_uc003aqx.1_Missense_Mutation_p.V148M|C1QTNF6_uc003aqy.1_Missense_Mutation_p.V148M|C1QTNF6_uc003aqz.1_Splice_Site	NM_182486	NP_872292	Q9BXI9	C1QT6_HUMAN	C1q and tumor necrosis factor related protein 6	129	C1q.					collagen					0						TTGCGGCCCACTGAGAAGGCG	0.657000													4	84					0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120282	38120282	+	Silent	SNP	C	T	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr22:38120282C>T	uc003atr.2	+	7	1990	c.1719C>T	c.(1717-1719)GAC>GAT	p.D573D	TRIOBP_uc003atu.2_Silent_p.D401D|TRIOBP_uc003atq.1_Silent_p.D573D|TRIOBP_uc003ats.1_Silent_p.D401D	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	573					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCACACGAGACAACCCCAGAA	0.587000													8	402					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48684252	48684252	+	Silent	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr3:48684252G>A	uc003cul.2	-	21	7520	c.7239C>T	c.(7237-7239)TAC>TAT	p.Y2413Y	CELSR3_uc003cuf.1_Silent_p.Y2483Y|CELSR3_uc010hkf.2_5'Flank|CELSR3_uc010hkg.2_Silent_p.Y396Y	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2413	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTAAGGTGCGGTAAACGAGGA	0.602000													3	44					0	0	1	0	0
ITIH1	3697	broad.mit.edu	37	3	52812973	52812973	+	Silent	SNP	C	T	T	rs151186293	byFrequency	TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr3:52812973C>T	uc003dfs.2	+	4	345	c.321C>T	c.(319-321)AAC>AAT	p.N107N	ITIH1_uc010hmn.1_RNA	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	107	VIT.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CAGATGGAAACGCATTTATCG	0.547000													18	67					0	0	1	0	0
BMP2K	55589	broad.mit.edu	37	4	79832652	79832652	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr4:79832652G>A	uc003hlk.2	+	16	3117	c.2951G>A	c.(2950-2952)CGC>CAC	p.R984H	PAQR3_uc003hlm.2_Intron|PAQR3_uc003hln.2_Intron|uc010ijm.1_5'Flank	NM_198892	NP_942595	Q9NSY1	BMP2K_HUMAN	BMP-2 inducible kinase isoform a	984						nucleus	ATP binding|protein serine/threonine kinase activity			lung(1)	1						CGCCAAAGGCGCACAAAGCAG	0.502000													3	63					0	0	1	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263554	140263554	+	Silent	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr5:140263554G>A	uc003lif.2	+	1	1701	c.1701G>A	c.(1699-1701)ACG>ACA	p.T567T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.T567T|PCDHA13_uc003lid.2_Silent_p.T567T	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	567	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCTGCTGACGCCCGGGGCTG	0.711000													6	146					0	0	1	0	0
ZBTB9	221504	broad.mit.edu	37	6	33423522	33423522	+	Silent	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr6:33423522G>A	uc003oeq.2	+	2	913	c.645G>A	c.(643-645)GAG>GAA	p.E215E		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	215					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						aagaagaagaggaggaggagg	0.443000													3	76					0	0	1	0	0
CNR1	1268	broad.mit.edu	37	6	88854091	88854091	+	Silent	SNP	A	G	G			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr6:88854091A>G	uc011dzq.1	-	2	4466	c.903T>C	c.(901-903)GCT>GCC	p.A301A	CNR1_uc010kbz.2_Silent_p.A301A|CNR1_uc011dzr.1_Silent_p.A301A|CNR1_uc011dzs.1_Silent_p.A301A|CNR1_uc003pmq.3_Silent_p.A301A|CNR1_uc011dzt.1_Silent_p.A301A|CNR1_uc010kca.2_Silent_p.A268A	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	301	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	CGTGGCTGTGAGCCTTCCAGA	0.537000													11	80					0	0	1	0	0
CDK19	23097	broad.mit.edu	37	6	110953281	110953281	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr6:110953281G>A	uc003puh.1	-	6	671	c.598C>T	c.(598-600)CGG>TGG	p.R200W	CDK19_uc003pui.1_Missense_Mutation_p.R140W|CDK19_uc011eax.1_Missense_Mutation_p.R76W	NM_015076	NP_055891	Q9BWU1	CDK19_HUMAN	cell division cycle 2-like 6 (CDK8-like)	200	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						TCTGGAGCCCGATACCAAAAT	0.358000													8	87					0	0	1	0	0
PAX4	5078	broad.mit.edu	37	7	127255484	127255484	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr7:127255484G>A	uc010lld.1	-	1	297	c.91C>T	c.(91-93)CGG>TGG	p.R31W	PAX4_uc003vmf.2_5'UTR|PAX4_uc003vmg.1_Missense_Mutation_p.R31W|PAX4_uc003vmh.2_5'UTR	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	39	Paired.		R -> Q.		cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCACAGGGCCGCATTCCACTG	0.582000													4	185					0	0	1	0	0
AMAC1L2	83650	broad.mit.edu	37	8	11189480	11189480	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr8:11189480G>A	uc003wtp.1	+	1	986	c.865G>A	c.(865-867)GAG>AAG	p.E289K		NM_054028	NP_473369	Q96KT7	AMCL2_HUMAN	acyl-malonyl condensing enzyme	289	DUF6 2.|Helical; (Potential).					integral to membrane					0			STAD - Stomach adenocarcinoma(15;0.00676)	COAD - Colon adenocarcinoma(149;0.0563)		CCTGCATTCCGAGGTGGTTGT	0.582000													37	178					0	0	1	0	0
LRRCC1	85444	broad.mit.edu	37	8	86049720	86049720	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr8:86049720G>A	uc003ycw.2	+	15	2505	c.2351G>A	c.(2350-2352)CGT>CAT	p.R784H	LRRCC1_uc010maa.1_Missense_Mutation_p.R485H|LRRCC1_uc003ycx.2_Missense_Mutation_p.R691H|LRRCC1_uc003ycy.2_Missense_Mutation_p.R764H	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	784					cell division|mitosis	centriole|nucleus					0						GCCCAAAATCGTGGAAAATTG	0.333000													18	28					0	0	1	0	0
FAM189A2	9413	broad.mit.edu	37	9	71992346	71992346	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr9:71992346G>A	uc010mon.1	+	5	417	c.313G>A	c.(313-315)GCT>ACT	p.A105T	FAM189A2_uc004ahg.2_Missense_Mutation_p.A105T|FAM189A2_uc010moo.1_5'UTR	NM_001127608	NP_001121080	Q15884	F1892_HUMAN	chromosome 9 open reading frame 61 precursor	105	Helical; (Potential).					integral to membrane					0						CTTGGTGGCCGCTGCCCTCCG	0.557000													4	142					0	0	1	0	0
CORO2A	7464	broad.mit.edu	37	9	100897160	100897160	+	Silent	SNP	C	T	T	rs147316581	by1000genomes	TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr9:100897160C>T	uc004ayl.2	-	4	662	c.396G>A	c.(394-396)GCG>GCA	p.A132A	CORO2A_uc004aym.2_Silent_p.A132A	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	132	WD 2.				actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				CTACTCTGCGCGCGTGGCCCA	0.557000													25	42					0	0	1	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134455699	134455699	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr9:134455699G>A	uc004cbc.2	-	23	3164	c.3034C>T	c.(3034-3036)CGG>TGG	p.R1012W	RAPGEF1_uc004cbb.2_Missense_Mutation_p.R1030W	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	1012	Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		TGCTGCCACCGCTTGGAGAAG	0.632000													25	44					0	0	1	0	0
SHROOM2	357	broad.mit.edu	37	X	9905237	9905237	+	Silent	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chrX:9905237G>A	uc004csu.1	+	7	3741	c.3651G>A	c.(3649-3651)TCG>TCA	p.S1217S	SHROOM2_uc004csv.2_Silent_p.S52S|SHROOM2_uc011mic.1_Silent_p.S52S|SHROOM2_uc004csw.1_Silent_p.S52S	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1217					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				TCGTGCACTCGGAGAGCCAGC	0.587000													5	17					0	0	1	0	0
FIGF	2277	broad.mit.edu	37	X	15365420	15365420	+	Silent	SNP	A	G	G			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chrX:15365420A>G	uc004cwt.1	-	6	1313	c.804T>C	c.(802-804)CGT>CGC	p.R268R		NM_004469	NP_004460	O43915	VEGFD_HUMAN	vascular endothelial growth factor D	268	2.|4 X 16 AA repeats of C-X(10)-C-X-C- X(1,3)-C.				angiogenesis|cell differentiation|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of mast cell chemotaxis|vascular endothelial growth factor receptor signaling pathway	extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|platelet-derived growth factor receptor binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					CACACTCGCAACGATCTTCGT	0.473000													12	104					0	0	1	0	0
HEPH	9843	broad.mit.edu	37	X	65427079	65427079	+	Silent	SNP	T	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chrX:65427079T>A	uc011moz.1	+	14	2403	c.2343T>A	c.(2341-2343)GGT>GGA	p.G781G	HEPH_uc004dwn.2_Silent_p.G781G|HEPH_uc004dwo.2_Silent_p.G511G|HEPH_uc010nkr.2_Silent_p.G589G|HEPH_uc011mpa.1_Silent_p.G781G|HEPH_uc010nks.2_Silent_p.G70G	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	778	Extracellular (Potential).|Plastocyanin-like 5.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						GGCTCCTGGGTTCCAGATACA	0.463000													8	37					0	0	1	0	0
CXCR3	2833	broad.mit.edu	37	X	70837109	70837109	+	Silent	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chrX:70837109G>A	uc004eaf.2	-	2	281	c.213C>T	c.(211-213)AAC>AAT	p.N71N	BCYRN1_uc011mpt.1_Intron|CXCR3_uc011mpx.1_Silent_p.N118N	NM_001504	NP_001495	P49682	CXCR3_HUMAN	chemokine (C-X-C motif) receptor 3 isoform A	71	Helical; Name=1; (Potential).				cell adhesion|cellular component movement|chemotaxis|elevation of cytosolic calcium ion concentration	cytoplasm|integral to plasma membrane	C-X-C chemokine receptor activity			ovary(2)|central_nervous_system(1)	3	Renal(35;0.156)					CCACCGCGCCGTTGCCCAGCA	0.667000													3	14					0	0	1	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117959418	117959418	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chrX:117959418G>A	uc004equ.2	+	4	684	c.211G>A	c.(211-213)GTC>ATC	p.V71I		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	71					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						agtcaatggcgtcctgccaga	0.055000													5	97					0	0	1	0	0
DCHS1	8642	broad.mit.edu	37	11	6662142	6662142	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr11:6662142delG	uc001mem.1	-	2	1113	c.703delC	c.(703-705)CGGfs	p.R235fs		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	235	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGCCCTCCGGGGGGGTGAA	0.587													8	275	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684390	26684391	+	Splice_Site	INS	-	C	C	rs148075904	by1000genomes	TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr17:26684390_26684391insC	uc002haz.2	-	3	211	c.79_splice	c.e3+0	p.P27_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		GCACAGAGCGGCTTTGCCACCG	0.762													5	11	---	---	---	---					
FETUB	26998	broad.mit.edu	37	3	186370136	186370137	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr3:186370136_186370137insC	uc010hyq.2	+	8	1126_1127	c.865_866insC	c.(865-867)ACCfs	p.T289fs	FETUB_uc011brz.1_Frame_Shift_Ins_p.T141fs|FETUB_uc003fqn.2_Frame_Shift_Ins_p.T289fs|FETUB_uc003fqo.2_Frame_Shift_Ins_p.T184fs|FETUB_uc010hyr.2_Frame_Shift_Ins_p.T252fs|FETUB_uc010hys.2_Frame_Shift_Ins_p.T141fs|FETUB_uc003fqp.3_Frame_Shift_Ins_p.T224fs	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	289						extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		GCAGAAAAACACCCCCCCAACA	0.495													7	328	---	---	---	---					
SFTPC	6440	broad.mit.edu	37	8	22020159	22020161	+	In_Frame_Del	DEL	GTG	-	-			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	g.chr8:22020159_22020161delGTG	uc003xax.3	+	2	273_275	c.115_117delGTG	c.(115-117)GTGdel	p.V44del	SFTPC_uc003xaw.3_In_Frame_Del_p.V93del|SFTPC_uc011kza.1_In_Frame_Del_p.V44del|SFTPC_uc003xaz.2_In_Frame_Del_p.V44del|SFTPC_uc003xay.3_In_Frame_Del_p.V44del|BMP1_uc011kzb.1_5'Flank|BMP1_uc003xba.2_5'Flank|BMP1_uc003xbb.2_5'Flank|BMP1_uc003xbe.2_5'Flank|BMP1_uc003xbc.2_5'Flank|BMP1_uc003xbd.2_5'Flank|BMP1_uc003xbf.2_5'Flank|BMP1_uc003xbg.2_5'Flank|BMP1_uc011kzc.1_5'Flank|BMP1_uc003xbh.2_5'Flank|BMP1_uc003xbi.2_5'Flank	NM_003018	NP_003009	P11686	PSPC_HUMAN	surfactant protein C precursor	44					respiratory gaseous exchange	extracellular space					0				Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		CCTTCTTATCGTGGTGGTGGTGG	0.601													7	249	---	---	---	---					
