Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
HSPG2	3339	broad.mit.edu	37	1	22211318	22211318	+	Silent	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr1:22211318G>A	uc001bfj.2	-	12	1489	c.1449C>T	c.(1447-1449)AAC>AAT	p.N483N	HSPG2_uc009vqd.2_Silent_p.N483N	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	483	Ig-like C2-type 1.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TGCCCCGGGCGTTCATGGCCT	0.627000													11	19					0	0	0.000978	0	0
BTBD8	284697	broad.mit.edu	37	1	92546168	92546168	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr1:92546168C>T	uc001doo.2	+	1	307	c.40C>T	c.(40-42)CTT>TTT	p.L14F	BTBD8_uc010otc.1_RNA	NM_183242	NP_899065	Q5XKL5	BTBD8_HUMAN	BTB (POZ) domain containing 8	14						nucleus				ovary(1)	1		all_lung(203;0.0484)|Lung NSC(277;0.126)|Glioma(108;0.222)		all cancers(265;0.0153)|Epithelial(280;0.0982)		CCCCATGGTACTTCTGGGGTC	0.657000													5	25					0	0	0.000602	0	0
TPR	7175	broad.mit.edu	37	1	186315342	186315342	+	Missense_Mutation	SNP	C	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr1:186315342C>G	uc001grv.2	-	23	3318	c.3021G>C	c.(3019-3021)AAG>AAC	p.K1007N		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1007	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CTTCCATCAACTTCTTTTCCA	0.353000			T	NTRK1	papillary thyroid								11	172					0	0	0.001368	0	0
HHAT	55733	broad.mit.edu	37	1	210761338	210761338	+	Silent	SNP	C	T	T	rs139136517		TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr1:210761338C>T	uc009xcx.2	+	10	1306	c.1140C>T	c.(1138-1140)GGC>GGT	p.G380G	HHAT_uc010psq.1_Silent_p.G243G|HHAT_uc001hhz.3_Silent_p.G380G|HHAT_uc010psr.1_Silent_p.G381G|HHAT_uc010pss.1_Silent_p.G335G|HHAT_uc009xcy.2_Silent_p.G315G|HHAT_uc010pst.1_Silent_p.G317G|HHAT_uc010psu.1_Silent_p.G315G|HHAT_uc001hia.3_Silent_p.G70G	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	380	Helical; (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		ACTGGCATGGCGGCTACGACT	0.587000													6	57					0	0	0.001984	0	0
ANUBL1	93550	broad.mit.edu	37	10	46135292	46135292	+	Missense_Mutation	SNP	T	C	C			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr10:46135292T>C	uc001jcp.3	-	6	931	c.689A>G	c.(688-690)AAG>AGG	p.K230R	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Missense_Mutation_p.K230R|ANUBL1_uc009xmu.2_Missense_Mutation_p.K156R|ANUBL1_uc001jcn.3_Missense_Mutation_p.K156R|ANUBL1_uc001jco.3_Intron|ANUBL1_uc001jcq.2_RNA	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	230							zinc ion binding				0						GTTCTTCATCTTAGCCTTCAG	0.413000													3	179					0	0	0.004672	0	0
PYROXD2	84795	broad.mit.edu	37	10	100143599	100143599	+	Nonsense_Mutation	SNP	G	A	A	rs148254477		TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr10:100143599G>A	uc001kpc.2	-	16	1788	c.1702C>T	c.(1702-1704)CGA>TGA	p.R568*	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	568							oxidoreductase activity			central_nervous_system(1)	1						GCTGCATTTCGCCCAGCAGCT	0.567000													25	228					0	0	0.007291	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642989	1642989	+	Missense_Mutation	SNP	C	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr11:1642989C>A	uc009ycy.1	-	3	560	c.473G>T	c.(472-474)GGC>GTC	p.G158V		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	172	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCCACAGGAGCCACAGCCCCC	0.677000													6	27					5.35267e-07	6.39124e-07	0.007413	1	0
MRGPRX3	117195	broad.mit.edu	37	11	18158870	18158870	+	Missense_Mutation	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr11:18158870G>A	uc001mnu.2	+	3	482	c.121G>A	c.(121-123)GCG>ACG	p.A41T		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	41	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TTCCCTTGTCGCGCTGACAGG	0.592000													69	172					0	0	0.003610	0	0
CD82	3732	broad.mit.edu	37	11	44621761	44621761	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr11:44621761C>T	uc001myc.2	+	4	365	c.117C>T	c.(115-117)AGC>AGT	p.S39S	CD82_uc001myd.2_Silent_p.S39S	NM_002231	NP_002222	P27701	CD82_HUMAN	CD82 antigen isoform 1	39	Extracellular (Potential).					integral to plasma membrane	protein binding			ovary(1)	1						CCGACAAGAGCAGTTTCATCT	0.602000													37	103					0	0	0.007835	0	0
OR5L2	26338	broad.mit.edu	37	11	55594988	55594988	+	Missense_Mutation	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr11:55594988G>A	uc001nhy.1	+	1	294	c.294G>A	c.(292-294)ATG>ATA	p.M98I		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TAGGGTGCATGGTGCAATTCT	0.468000										HNSCC(27;0.073)			32	244					0	0	0.003271	0	0
OR5AN1	390195	broad.mit.edu	37	11	59132343	59132343	+	Missense_Mutation	SNP	T	C	C			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr11:59132343T>C	uc010rks.1	+	1	412	c.412T>C	c.(412-414)TCA>CCA	p.S138P		NM_001004729	NP_001004729	Q8NGI8	O5AN1_HUMAN	olfactory receptor, family 5, subfamily AN,	138	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATCCATCATGTCACCCACCCT	0.478000													8	231					0	0	0.006214	0	0
ST3GAL4	6484	broad.mit.edu	37	11	126278326	126278326	+	Missense_Mutation	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr11:126278326G>A	uc001qds.2	+	8	781	c.562G>A	c.(562-564)GTC>ATC	p.V188I	ST3GAL4_uc001qdt.2_Missense_Mutation_p.V184I|ST3GAL4_uc009zcc.2_Missense_Mutation_p.V24I|ST3GAL4_uc009zcd.2_Missense_Mutation_p.V177I|ST3GAL4_uc001qdu.2_Missense_Mutation_p.V184I|ST3GAL4_uc001qdv.2_Missense_Mutation_p.V188I|ST3GAL4_uc009zce.2_Missense_Mutation_p.V184I|ST3GAL4_uc001qdw.2_Missense_Mutation_p.V177I|ST3GAL4_uc001qdx.1_Missense_Mutation_p.V145I|ST3GAL4_uc001qdy.2_Missense_Mutation_p.V24I|ST3GAL4_uc001qdz.2_Missense_Mutation_p.V24I	NM_006278	NP_006269	Q11206	SIA4C_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	188	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.138)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0767)		CACACTCCTCGTCCTGGTAGC	0.547000													31	69					0	0	0.002096	0	0
C12orf36	283422	broad.mit.edu	37	12	13529264	13529264	+	Missense_Mutation	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr12:13529264G>A	uc001rbs.1	-	2	294	c.76C>T	c.(76-78)CCT>TCT	p.P26S		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		tcttcatcaggaacacacaga	0.060000													4	35					0	0	0.000248	0	0
POLR3B	55703	broad.mit.edu	37	12	106850924	106850924	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr12:106850924C>T	uc001tlp.2	+	21	2524	c.2302C>T	c.(2302-2304)CGT>TGT	p.R768C	POLR3B_uc001tlq.2_Missense_Mutation_p.R710C	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	768					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						AGGCTTTGGGCGTTGCCTTGT	0.408000													39	96					0	0	0.002222	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834834	125834834	+	Missense_Mutation	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr12:125834834G>A	uc001uhe.1	+	2	897	c.889G>A	c.(889-891)GCC>ACC	p.A297T		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	297	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGGGGACACGGCCACCTTTTT	0.532000													16	343					0	0	0.006122	0	0
FARP1	10160	broad.mit.edu	37	13	99083304	99083304	+	Missense_Mutation	SNP	C	T	T	rs61730891	byFrequency	TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr13:99083304C>T	uc001vnj.2	+	18	2249	c.1913C>T	c.(1912-1914)GCG>GTG	p.A638V	FARP1_uc001vnh.2_Missense_Mutation_p.A638V	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	638	DH.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			AAGCACCTGGCGGCTCACCTG	0.587000													5	112					0	0	0.003080	0	0
MCF2L	23263	broad.mit.edu	37	13	113699625	113699625	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr13:113699625C>T	uc001vsu.2	+	4	512	c.490C>T	c.(490-492)CGG>TGG	p.R164W	MCF2L_uc001vsq.2_Missense_Mutation_p.R164W|MCF2L_uc010tjr.1_Missense_Mutation_p.R107W|MCF2L_uc001vsr.2_Missense_Mutation_p.R111W|MCF2L_uc001vss.3_Missense_Mutation_p.R105W|MCF2L_uc010tjs.1_Missense_Mutation_p.R105W|MCF2L_uc001vst.1_Missense_Mutation_p.R69W	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	137	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				GGTGATAGACCGGCGACGGGA	0.667000													5	90					0	0	0.001168	0	0
SLC38A6	145389	broad.mit.edu	37	14	61451520	61451520	+	Silent	SNP	A	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr14:61451520A>G	uc001xfg.1	+	3	425	c.309A>G	c.(307-309)ACA>ACG	p.T103T	SLC38A6_uc001xfh.1_Silent_p.T103T|SLC38A6_uc001xfi.2_RNA|SLC38A6_uc001xfj.1_RNA|SLC38A6_uc001xfk.2_RNA|SLC38A6_uc010trz.1_Silent_p.T80T	NM_153811	NP_722518	Q8IZM9	S38A6_HUMAN	solute carrier family 38, member 6	103	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(108;0.0981)		GTATTCAGACAGGTGAGTAAA	0.378000													13	175					0	0	0.002450	0	0
STON2	85439	broad.mit.edu	37	14	81744248	81744248	+	Missense_Mutation	SNP	T	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr14:81744248T>G	uc010tvu.1	-	4	1608	c.1407A>C	c.(1405-1407)AAA>AAC	p.K469N	STON2_uc001xvk.1_Missense_Mutation_p.K469N|STON2_uc010tvt.1_Missense_Mutation_p.K266N	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	469	SHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		CACGGAATGGTTTTTCTAGGC	0.478000													12	290					0	0	0.001368	0	0
ATG2B	55102	broad.mit.edu	37	14	96757939	96757939	+	Silent	SNP	A	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr14:96757939A>G	uc001yfi.2	-	38	5942	c.5577T>C	c.(5575-5577)CAT>CAC	p.H1859H		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1859										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		TCACTTACCCATGTCGATAGG	0.348000													18	157					0	0	0.001523	0	0
SH3GL3	6457	broad.mit.edu	37	15	84286924	84286924	+	Missense_Mutation	SNP	A	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr15:84286924A>G	uc002bjw.2	+	9	1124	c.929A>G	c.(928-930)GAC>GGC	p.D310G	SH3GL3_uc002bjx.2_Missense_Mutation_p.D241G|SH3GL3_uc002bju.2_Missense_Mutation_p.D318G|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	310	SH3.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						AAAGAAGGGGACATCATTACA	0.423000													10	66					0	0	0.008291	0	0
SEC14L5	9717	broad.mit.edu	37	16	5061202	5061202	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr16:5061202C>T	uc002cye.2	+	15	2087	c.1907C>T	c.(1906-1908)ACG>ATG	p.T636M		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	636	GOLD.					integral to membrane|intracellular	transporter activity				0						GATGTCCTGACGGCTCTGCAC	0.662000													20	35					0	0	0.002299	0	0
Unknown	0	broad.mit.edu	37	17	34235499	34235499	+	RNA	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr17:34235499G>A	uc010ctx.1	-	1		c.1455C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		AGGTGTCATTGCAGGTGCTGG	0.507000													4	73					0	0	0.000248	0	0
NLRP13	126204	broad.mit.edu	37	19	56422063	56422063	+	Missense_Mutation	SNP	G	C	C	rs144412914	by1000genomes	TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr19:56422063G>C	uc010ygg.1	-	6	2173	c.2148C>G	c.(2146-2148)AAC>AAG	p.N716K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	716							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AGCAAATGCTGTTCCATGCGT	0.458000													41	39					0	0	0.008740	0	0
TTN	7273	broad.mit.edu	37	2	179645981	179645981	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr2:179645981C>T	uc010zfg.1	-	21	3614	c.3390G>A	c.(3388-3390)GTG>GTA	p.V1130V	TTN_uc010zfh.1_Silent_p.V1084V|TTN_uc010zfi.1_Silent_p.V1084V|TTN_uc010zfj.1_Silent_p.V1084V|TTN_uc002unb.2_Silent_p.V1130V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1130							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTGTAACTCACTTTGTATC	0.353000													23	70					0	0	0.004656	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								42	103					0	0	0.003610	0	0
PREX1	57580	broad.mit.edu	37	20	47305216	47305216	+	Missense_Mutation	SNP	A	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr20:47305216A>G	uc002xtw.1	-	10	1336	c.1313T>C	c.(1312-1314)GTC>GCC	p.V438A		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	438	DEP 1.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GCACTTGGGGACAGTGCTCAG	0.562000													9	88					0	0	0.004482	0	0
ITPR1	3708	broad.mit.edu	37	3	4810358	4810358	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr3:4810358C>T	uc003bqa.2	+	43	6093	c.5745C>T	c.(5743-5745)GAC>GAT	p.D1915D	ITPR1_uc010hca.1_Silent_p.D1900D|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.D885D	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1963	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGGCCAAGGACGACCTGGAGA	0.612000													27	83					0	0	0.003755	0	0
STAG1	10274	broad.mit.edu	37	3	136117601	136117601	+	Missense_Mutation	SNP	G	C	C			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr3:136117601G>C	uc003era.1	-	22	2559	c.2267C>G	c.(2266-2268)TCT>TGT	p.S756C	STAG1_uc003erb.1_Missense_Mutation_p.S756C|STAG1_uc003erc.1_Missense_Mutation_p.S530C	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	756					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						TTTGGAAGGAGAGCCATCAGT	0.294000													19	58					0	0	0.002780	0	0
RBP1	5947	broad.mit.edu	37	3	139237308	139237308	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr3:139237308C>T	uc003eti.2	-	3	606	c.495G>A	c.(493-495)GAG>GAA	p.E165E		NM_002899	NP_002890	P09455	RET1_HUMAN	retinol binding protein 1, cellular isoform a	103						cytoplasm	retinal binding|retinol binding|transporter activity				0					Vitamin A(DB00162)	AGCCACGCCCCTCCTTCTCAC	0.597000													7	102					0	0	0.008291	0	0
FAT4	79633	broad.mit.edu	37	4	126371851	126371851	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr4:126371851C>T	uc003ifj.3	+	9	9680	c.9680C>T	c.(9679-9681)GCT>GTT	p.A3227V	FAT4_uc011cgp.1_Missense_Mutation_p.A1525V|FAT4_uc003ifi.1_Missense_Mutation_p.A705V	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3227	Cadherin 31.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGAACAAATGCTGTGATTGCG	0.428000													3	130					0	0	0.000248	0	0
C6	729	broad.mit.edu	37	5	41149347	41149347	+	Silent	SNP	A	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr5:41149347A>G	uc003jmk.2	-	17	2829	c.2619T>C	c.(2617-2619)TGT>TGC	p.C873C	C6_uc003jml.1_Silent_p.C873C	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	873	Complement control factor I module 2.|C5b-binding domain.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ACTTACCTGAACATTTTTCCC	0.398000													182	242					0	0	0.003610	0	0
MAST4	375449	broad.mit.edu	37	5	66441064	66441064	+	Missense_Mutation	SNP	A	C	C			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr5:66441064A>C	uc003jut.1	+	22	2452	c.2384A>C	c.(2383-2385)GAG>GCG	p.E795A	MAST4_uc003juu.1_Missense_Mutation_p.E805A|MAST4_uc011cra.1_Missense_Mutation_p.E778A|MAST4_uc003juv.2_Missense_Mutation_p.E790A|MAST4_uc003juw.2_Missense_Mutation_p.E790A	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	987						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		ATTTCAACAGAGGGAGAGCAA	0.512000													14	23					0	0	0.003163	0	0
FEM1C	56929	broad.mit.edu	37	5	114860125	114860125	+	Missense_Mutation	SNP	G	C	C			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr5:114860125G>C	uc003krb.1	-	3	2296	c.1734C>G	c.(1732-1734)ATC>ATG	p.I578M		NM_020177	NP_064562	Q96JP0	FEM1C_HUMAN	feminization 1 homolog a	578						cytoplasm				breast(2)|ovary(1)	3		all_cancers(142;0.000575)|all_epithelial(76;9.98e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;2.5e-07)|Epithelial(69;2.66e-07)|all cancers(49;1.39e-05)		TTATAGGCTGGATTAAATTTT	0.368000													69	103					0	0	0.003610	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229608	140229608	+	Missense_Mutation	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr5:140229608G>A	uc003lhu.2	+	1	2252	c.1528G>A	c.(1528-1530)GTG>ATG	p.V510M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.V510M	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	510	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTACGTGTCAGTGCACGCGGA	0.697000													3	61					0	0	0.004672	0	0
ATP10B	23120	broad.mit.edu	37	5	160067534	160067534	+	Missense_Mutation	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr5:160067534G>A	uc003lym.1	-	10	1781	c.934C>T	c.(934-936)CGC>TGC	p.R312C	ATP10B_uc003lyp.2_Missense_Mutation_p.R312C|ATP10B_uc011deg.1_Missense_Mutation_p.R356C|ATP10B_uc003lyo.2_Missense_Mutation_p.R284C	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	312	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATATTCATGCGCCGCTCAATC	0.473000													10	260					0	0	0.001368	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713716	32713716	+	Missense_Mutation	SNP	G	C	C	rs35633399		TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr6:32713716G>C	uc003obx.2	+	3	538	c.480G>C	c.(478-480)GAG>GAC	p.E160D		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	160	Alpha-2.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTGTTTCTGAGACCAGCTTCC	0.493000													97	125					0	0	0.003610	0	0
RFX6	222546	broad.mit.edu	37	6	117198501	117198501	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr6:117198501C>T	uc003pxm.2	+	1	126	c.63C>T	c.(61-63)TCC>TCT	p.S21S		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	21					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CCCAACTGTCCCCGGGGATCC	0.687000													4	18					0	0	0.000602	0	0
HOXA4	3201	broad.mit.edu	37	7	27169089	27169089	+	Silent	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr7:27169089G>A	uc003sym.3	-	2	765	c.718C>T	c.(718-720)CTG>TTG	p.L240L	HOXA3_uc003syk.2_5'Flank	NM_002141	NP_002132	Q00056	HXA4_HUMAN	homeobox A4	240	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CGCCGGGTCAGGTATCGATTG	0.572000													40	75					0	0	0.007835	0	0
TRY6	154754	broad.mit.edu	37	7	142481342	142481342	+	Missense_Mutation	SNP	G	C	C	rs146962136	by1000genomes	TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr7:142481342G>C	uc011ksq.1	+	3	499	c.416G>C	c.(415-417)TGC>TCC	p.C139S	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						GGCACCGAGTGCCTTATCTCC	0.557000													3	27					0	0	0.001368	0	0
ACTL7B	10880	broad.mit.edu	37	9	111617665	111617665	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr9:111617665C>T	uc004bdi.2	-	1	611	c.546G>A	c.(544-546)TCG>TCA	p.S182S		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	182						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						TGGACAGCAACGACTGGGACG	0.647000													6	64					0	0	0.001984	0	0
C9orf5	23731	broad.mit.edu	37	9	111853321	111853321	+	Missense_Mutation	SNP	G	C	C			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr9:111853321G>C	uc004bdt.3	-	5	1063	c.1031C>G	c.(1030-1032)ACG>AGG	p.T344R	C9orf5_uc004bds.3_RNA|C9orf5_uc004bdr.3_Missense_Mutation_p.T344R	NM_032012	NP_114401	Q9H330	CI005_HUMAN	hypothetical protein LOC23731	344						integral to membrane				central_nervous_system(1)	1		Myeloproliferative disorder(63;0.204)		OV - Ovarian serous cystadenocarcinoma(323;3.08e-05)|STAD - Stomach adenocarcinoma(157;0.0823)		TCTAAGAAACGTTCCTATTTC	0.502000													9	75					0	0	0.004482	0	0
MXRA5	25878	broad.mit.edu	37	X	3228182	3228182	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:3228182C>T	uc004crg.3	-	7	8219	c.8062G>A	c.(8062-8064)GTT>ATT	p.V2688I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2688	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AGAAGAGAAACGCGTCCCAGG	0.627000													48	74					0	0	0.003610	0	0
TLR7	51284	broad.mit.edu	37	X	12906720	12906720	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:12906720C>T	uc004cvc.2	+	3	3232	c.3093C>T	c.(3091-3093)AAC>AAT	p.N1031N		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	1031	TIR.|Cytoplasmic (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	GTCTAAAGAACGCCCTGGCCA	0.517000													77	161					0	0	0.003610	0	0
REPS2	9185	broad.mit.edu	37	X	17073015	17073015	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:17073015C>T	uc004cxv.1	+	8	1227	c.1056C>T	c.(1054-1056)AAC>AAT	p.N352N	REPS2_uc004cxw.1_Silent_p.N351N|REPS2_uc011miw.1_Silent_p.N211N	NM_004726	NP_004717	Q8NFH8	REPS2_HUMAN	RALBP1 associated Eps domain containing 2	352	EH 2.				epidermal growth factor receptor signaling pathway|protein complex assembly	cytoplasm	calcium ion binding|protein binding			skin(2)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					CTCGGAAGAACGGCTACCCAT	0.512000													20	53					0	0	0.001882	0	0
PTCHD1	139411	broad.mit.edu	37	X	23353202	23353202	+	Silent	SNP	T	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:23353202T>G	uc004dal.3	+	1	218	c.210T>G	c.(208-210)GTT>GTG	p.V70V	PTCHD1_uc010nfu.1_Silent_p.V70V	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	70					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						GCAACCTCGTTAACAGCCTCT	0.657000													4	68					0	0	0.001168	0	0
FAM47B	170062	broad.mit.edu	37	X	34962658	34962658	+	Silent	SNP	C	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:34962658C>A	uc004ddi.1	+	1	1728	c.1710C>A	c.(1708-1710)CCC>CCA	p.P570P		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	570										ovary(3)|breast(1)	4						TGATTGACCCCAAGCCCGTAC	0.448000													8	270					5.18039e-06	6.09458e-06	0.003080	1	0
ZNF41	7592	broad.mit.edu	37	X	47307606	47307606	+	Missense_Mutation	SNP	T	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:47307606T>G	uc004dhs.3	-	4	1756	c.1689A>C	c.(1687-1689)AAA>AAC	p.K563N	ZNF41_uc004dhu.3_Missense_Mutation_p.K555N|ZNF41_uc004dht.3_Missense_Mutation_p.K435N|ZNF41_uc004dhv.3_Missense_Mutation_p.K531N|ZNF41_uc004dhw.3_Missense_Mutation_p.K523N|ZNF41_uc004dhy.3_Missense_Mutation_p.K521N|ZNF41_uc004dhx.3_Missense_Mutation_p.K521N|ZNF41_uc011mlm.1_Missense_Mutation_p.K435N	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	563						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				ACATATAGGGTTTTTCCCCAG	0.418000													22	193					0	0	0.002780	0	0
TSIX	9383	broad.mit.edu	37	X	73046827	73046827	+	RNA	SNP	T	C	C			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:73046827T>C	uc004ebn.2	+	1		c.34788T>C			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CTCTTGAGGCTTTTGTTGGTT	0.473000													3	134					0	0	0.004672	0	0
GLUD2	2747	broad.mit.edu	37	X	120181766	120181766	+	Silent	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:120181766C>T	uc004eto.2	+	1	305	c.228C>T	c.(226-228)CGC>CGT	p.R76R		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	76					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	TCTTCGATCGCGGCGCCAGCA	0.647000													13	129					0	0	0.004007	0	0
GRIA3	2892	broad.mit.edu	37	X	122561827	122561827	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:122561827G>A	uc004etq.3	+	13	2206	c.1913G>A	c.(1912-1914)TGG>TAG	p.W638*	GRIA3_uc004etr.3_Nonsense_Mutation_p.W638*|GRIA3_uc004ets.3_RNA	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	638	Helical; (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	GGGGTTTGGTGGTTCTTCACC	0.443000													16	306					0	0	0.004007	0	0
MAGEC1	9947	broad.mit.edu	37	X	140996036	140996036	+	Missense_Mutation	SNP	T	C	C			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:140996036T>C	uc004fbt.2	+	4	3132	c.2846T>C	c.(2845-2847)ATC>ACC	p.I949T	MAGEC1_uc010nsl.1_Missense_Mutation_p.I16T	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	949	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCTGTGATCTTCAGGAAA	0.463000										HNSCC(15;0.026)			11	291					0	0	0.000978	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717275	142717275	+	Silent	SNP	G	A	A			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:142717275G>A	uc004fbx.2	-	2	2026	c.1650C>T	c.(1648-1650)AGC>AGT	p.S550S	SLITRK4_uc004fby.2_Silent_p.S550S	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	550	Extracellular (Potential).|LRRCT 2.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CAATCCCGTCGCTCAACTTCT	0.438000													82	152					0	0	0.003610	0	0
BGN	633	broad.mit.edu	37	X	152770259	152770259	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:152770259C>T	uc004fhr.1	+	2	342	c.170C>T	c.(169-171)CCC>CTC	p.P57L	BGN_uc004fhq.1_RNA	NM_001711	NP_001702	P21810	PGS1_HUMAN	biglycan preproprotein	57						proteinaceous extracellular matrix|transport vesicle	extracellular matrix structural constituent			breast(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TCTGTCACACCCACCTACAGC	0.622000													79	98					0	0	0.003610	0	0
FUBP1	8880	broad.mit.edu	37	1	78432402	78432405	+	Frame_Shift_Del	DEL	AACA	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr1:78432402_78432405delAACA	uc001dii.2	-	7	535_538	c.446_449delTGTT	c.(445-450)ATGTTAfs	p.M149fs	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Frame_Shift_Del_p.M170fs	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	149_150	KH 1.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						TGTTCCAGTTAACATACAGGACCT	0.338													30	43	---	---	---	---					
FAM102B	284611	broad.mit.edu	37	1	109103056	109103058	+	In_Frame_Del	DEL	GAA	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr1:109103056_109103058delGAA	uc010ouy.1	+	1	86_88	c.6_8delGAA	c.(4-9)ATGAAG>ATG	p.K6del		NM_001010883	NP_001010883	Q5T8I3	F102B_HUMAN	hypothetical protein LOC284611	6	Poly-Lys.									large_intestine(1)	1		all_epithelial(167;5.52e-05)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0217)|Lung(183;0.109)|COAD - Colon adenocarcinoma(174;0.141)|Epithelial(280;0.182)		TCACGATGATGAAGAAGAAGAAG	0.640													12	8	---	---	---	---					
C1orf56	54964	broad.mit.edu	37	1	151021328	151021331	+	Splice_Site	DEL	AGTA	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr1:151021328_151021331delAGTA	uc001ewn.2	+	1	1070	c.1005_splice	c.e1+1	p.P335_splice		NM_017860	NP_060330	Q9BUN1	CA056_HUMAN	hypothetical protein LOC54964 precursor							extracellular region					0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			AGATGCAACCAGTAAGTGTTTGGT	0.505											OREG0013793	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	120	---	---	---	---					
C11orf63	79864	broad.mit.edu	37	11	122805551	122805554	+	Frame_Shift_Del	DEL	AAAG	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr11:122805551_122805554delAAAG	uc001pym.2	+	5	1699_1702	c.1402_1405delAAAG	c.(1402-1407)AAAGAAfs	p.K468fs		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	468_469										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		GAATGTTAATAAAGAAAGAGGACA	0.377													12	199	---	---	---	---					
ESR2	2100	broad.mit.edu	37	14	64699865	64699866	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr14:64699865_64699866delTG	uc001xha.1	-	9	2050_2051	c.1582_1583delCA	c.(1582-1584)CAGfs	p.Q528fs	ESR2_uc001xgu.2_Intron|ESR2_uc001xgv.2_Intron|ESR2_uc001xgw.2_Intron|ESR2_uc001xgx.2_Intron|ESR2_uc001xgy.1_Intron|ESR2_uc001xgz.1_3'UTR|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Frame_Shift_Del_p.Q437fs	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	528	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	TCACTGAGACTGTGGGTTCTGG	0.604													17	88	---	---	---	---					
ABCA8	10351	broad.mit.edu	37	17	66887644	66887645	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr17:66887644_66887645insG	uc002jhp.2	-	22	3188_3189	c.3009_3010insC	c.(3007-3012)AGCATCfs	p.S1003fs	ABCA8_uc002jhq.2_Frame_Shift_Ins_p.S1043fs|ABCA8_uc010wqq.1_Frame_Shift_Ins_p.S1043fs|ABCA8_uc010wqr.1_Frame_Shift_Ins_p.S982fs	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1003_1004						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TAATCATCGATGCTGCTCATGG	0.347													26	59	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42795593	42795594	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr19:42795593_42795594delTG	uc002otf.1	+	10	2713_2714	c.2673_2674delTG	c.(2671-2676)TCTGTAfs	p.S891fs		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	891_892	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				TCCTGCAGTCTGTACCCTCCGC	0.624			T	DUX4	soft tissue sarcoma								7	64	---	---	---	---					
EPC2	26122	broad.mit.edu	37	2	149511681	149511682	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr2:149511681_149511682delAG	uc010zbt.1	+	4	672_673	c.645_646delAG	c.(643-648)ACAGAGfs	p.T215fs		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	215_216					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		GGAGAAGAACAGAGAAAATGCA	0.361													13	13	---	---	---	---					
ZNF334	55713	broad.mit.edu	37	20	45130734	45130736	+	In_Frame_Del	DEL	AAG	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr20:45130734_45130736delAAG	uc002xsc.2	-	5	1426_1428	c.1242_1244delCTT	c.(1240-1245)TTCTTT>TTT	p.414_415FF>F	ZNF334_uc002xsa.2_In_Frame_Del_p.437_438FF>F|ZNF334_uc002xsb.2_In_Frame_Del_p.376_377FF>F|ZNF334_uc002xsd.2_In_Frame_Del_p.376_377FF>F|ZNF334_uc010ghl.2_In_Frame_Del_p.413_414FF>F	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	414_415	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				AGATTGACAAAAGAAGGTTTTCT	0.424													41	158	---	---	---	---					
MYH15	22989	broad.mit.edu	37	3	108103610	108103612	+	In_Frame_Del	DEL	TTC	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr3:108103610_108103612delTTC	uc003dxa.1	-	40	5670_5672	c.5613_5615delGAA	c.(5611-5616)AAGAAT>AAT	p.K1871del		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1871	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CCTGCTCAGATTCTTCTTGTCTT	0.473													55	131	---	---	---	---					
PCDH18	54510	broad.mit.edu	37	4	138442647	138442649	+	In_Frame_Del	DEL	TCT	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr4:138442647_138442649delTCT	uc003ihe.3	-	4	3329_3331	c.2942_2944delAGA	c.(2941-2946)AAGAGT>AGT	p.K981del	PCDH18_uc003ihf.3_In_Frame_Del_p.K973del|PCDH18_uc011cgz.1_In_Frame_Del_p.K192del|PCDH18_uc003ihg.3_In_Frame_Del_p.K760del|PCDH18_uc011cha.1_In_Frame_Del_p.K161del	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	981	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GTGGAAAAACTCTTCTTCTTTTC	0.512													20	109	---	---	---	---					
PABPC1	26986	broad.mit.edu	37	8	101733783	101733784	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chr8:101733783_101733784insT	uc003yjs.1	-	1	532_533	c.28_29insA	c.(28-30)ATGfs	p.M10fs	PABPC1_uc011lhc.1_Frame_Shift_Ins_p.M10fs|PABPC1_uc011lhd.1_Intron|PABPC1_uc003yjt.1_Frame_Shift_Ins_p.M10fs|PABPC1_uc003yju.2_RNA	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	10					mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			GAGCGAGGCCATGGGGTAGCTG	0.698													10	29	---	---	---	---					
OGT	8473	broad.mit.edu	37	X	70756047	70756050	+	Frame_Shift_Del	DEL	TTCC	-	-			TCGA-DB-5274-01A-01D-1468-08	TCGA-DB-5274-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	ad0bc157-fb99-4b6c-80b7-384aac4304c0	f4361c01-824e-4b40-9f03-767a2796e586	g.chrX:70756047_70756050delTTCC	uc004eaa.1	+	2	274_277	c.57_60delTTCC	c.(55-60)CTTTCCfs	p.L19fs	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Intron|OGT_uc011mpw.1_Frame_Shift_Del_p.L19fs	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	19_20					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					AACGTATGCTTTCCTTCCAAGGGT	0.426													44	87	---	---	---	---					
