Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	G	G	rs58074988		TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr1:12887606C>G	uc001auk.2	-	3	447	c.251G>C	c.(250-252)TGC>TCC	p.C84S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	84											0						ATTGAGGAAGCACCCATGGGC	0.483000													4	169					0	0	0.021553	0	0
ECE1	1889	broad.mit.edu	37	1	21564631	21564631	+	Missense_Mutation	SNP	C	A	A	rs141146885	byFrequency	TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr1:21564631C>A	uc001bek.2	-	11	1460	c.1385G>T	c.(1384-1386)AGC>ATC	p.S462I	ECE1_uc001bem.2_Missense_Mutation_p.S446I|ECE1_uc001bej.2_Missense_Mutation_p.S450I|ECE1_uc001bei.2_Missense_Mutation_p.S459I|ECE1_uc010odl.1_Missense_Mutation_p.S462I|ECE1_uc009vqa.1_Missense_Mutation_p.S462I	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	462	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		ACTTACTATGCTCTTGCTGTC	0.562000													6	19					0.00116845	0.00121093	0.021553	1	0
COPA	1314	broad.mit.edu	37	1	160268752	160268752	+	Silent	SNP	T	C	C			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr1:160268752T>C	uc009wti.2	-	19	2254	c.1860A>G	c.(1858-1860)CTA>CTG	p.L620L	COPA_uc001fvv.3_Silent_p.L629L	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	620					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ACTGGCCAACTAGTTTGGCAT	0.443000													16	62					0	0	0.175082	0	0
CUBN	8029	broad.mit.edu	37	10	16877063	16877063	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr10:16877063G>T	uc001ioo.2	-	64	10364	c.10312C>A	c.(10312-10314)CAT>AAT	p.H3438N		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3438	CUB 26.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CCAAGTGAATGAAAAAAGAGG	0.428000													16	67					6.31663e-08	6.66755e-08	0.132662	1	0
PCDH15	65217	broad.mit.edu	37	10	55569195	55569195	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr10:55569195T>C	uc010qhs.1	-	37	5025	c.4630A>G	c.(4630-4632)ACA>GCA	p.T1544A	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.T1537A|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTCTTCCATGTTGTGTATGTA	0.403000										HNSCC(58;0.16)			8	137					0	0	0.058154	0	0
LETMD1	25875	broad.mit.edu	37	12	51450230	51450230	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr12:51450230A>G	uc001rxm.2	+	7	916	c.860A>G	c.(859-861)GAC>GGC	p.D287G	LETMD1_uc010smz.1_Missense_Mutation_p.D237G|LETMD1_uc010sna.1_Silent_p.G124G|LETMD1_uc001rxl.2_Missense_Mutation_p.D231G|LETMD1_uc009zlv.2_RNA|LETMD1_uc001rxs.2_Silent_p.G124G|LETMD1_uc009zlw.2_Missense_Mutation_p.D300G|LETMD1_uc001rxn.2_Missense_Mutation_p.D130G|LETMD1_uc001rxo.2_RNA|LETMD1_uc001rxp.2_Missense_Mutation_p.D170G|LETMD1_uc001rxq.2_Missense_Mutation_p.D163G|LETMD1_uc001rxr.2_RNA|LETMD1_uc001rxt.2_Missense_Mutation_p.D27G	NM_015416	NP_056231	Q6P1Q0	LTMD1_HUMAN	LETM1 domain containing 1 isoform 1	287	Mitochondrial intermembrane (Potential).|LETM1.					integral to membrane|mitochondrial outer membrane	protein binding			central_nervous_system(2)	2						CACCAACTGGACAAGGCTTTG	0.498000													4	117					0	0	0.014758	0	0
LEMD3	23592	broad.mit.edu	37	12	65639990	65639990	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr12:65639990G>A	uc001ssl.1	+	13	2627	c.2621G>A	c.(2620-2622)CGC>CAC	p.R874H	LEMD3_uc009zqo.1_Missense_Mutation_p.R873H	NM_014319	NP_055134	Q9Y2U8	MAN1_HUMAN	LEM domain containing 3	874	Interaction with SMAD1, SMAD2, SMAD3 and SMAD5.				negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway	integral to nuclear inner membrane|membrane fraction	DNA binding|nucleotide binding|protein binding			central_nervous_system(3)|ovary(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0104)		TACCACCATCGCTTTCCCCAG	0.358000													4	88					0	0	0.150653	0	0
HAL	3034	broad.mit.edu	37	12	96389484	96389484	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr12:96389484G>A	uc001tem.1	-	2	502	c.205C>T	c.(205-207)CGG>TGG	p.R69W	HAL_uc009zti.1_RNA|HAL_uc010suw.1_5'UTR|HAL_uc010sux.1_Missense_Mutation_p.R69W	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	69					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	ACCTCGAGCCGGTCCTCGTTG	0.612000													6	25					0	0	0.021553	0	0
TPM1	7168	broad.mit.edu	37	15	63354774	63354774	+	Splice_Site	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr15:63354774G>A	uc002alg.2	+	8	894	c.703_splice	c.e8-1	p.A235_splice	TPM1_uc002alh.2_Splice_Site_p.A235_splice|TPM1_uc010bgn.2_Splice_Site|TPM1_uc002ali.2_Splice_Site_p.A235_splice|TPM1_uc002alj.2_Splice_Site_p.A235_splice|TPM1_uc002alk.2_Splice_Site_p.A235_splice|TPM1_uc002all.2_Splice_Site_p.A235_splice|TPM1_uc002alm.2_Splice_Site_p.A277_splice|TPM1_uc010uie.1_Splice_Site_p.A235_splice|TPM1_uc002alp.2_Splice_Site_p.A235_splice|TPM1_uc010uif.1_Splice_Site_p.A199_splice|TPM1_uc002alr.2_Splice_Site_p.A199_splice|TPM1_uc002als.2_Splice_Site_p.A199_splice|TPM1_uc010uig.1_Splice_Site_p.A199_splice|TPM1_uc002alt.2_Splice_Site_p.A199_splice|TPM1_uc010bgp.2_Splice_Site_p.A109_splice	NM_001018005	NP_001018005	P09493	TPM1_HUMAN	tropomyosin 1 alpha chain isoform 1						cardiac muscle contraction|cellular component movement|cellular response to reactive oxygen species|muscle filament sliding|negative regulation of cell migration|positive regulation of ATPase activity|positive regulation of cell adhesion|positive regulation of heart rate by epinephrine|positive regulation of stress fiber assembly|regulation of muscle contraction|ruffle organization|sarcomere organization|ventricular cardiac muscle tissue morphogenesis|wound healing	bleb|cytosol|muscle thin filament tropomyosin|ruffle membrane|stress fiber	actin binding|structural constituent of cytoskeleton|structural constituent of muscle				0						AATCATTACAGGCTGAGACTC	0.358000													14	56					0	0	0.146539	0	0
IDH2	3418	broad.mit.edu	37	15	90631838	90631838	+	Missense_Mutation	SNP	C	T	T	rs121913503		TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr15:90631838C>T	uc002box.2	-	4	601	c.515G>A	c.(514-516)AGG>AAG	p.R172K	IDH2_uc010uqb.1_Missense_Mutation_p.R120K|IDH2_uc010uqc.1_Missense_Mutation_p.R42K|IDH2_uc010bnu.2_Intron	NM_002168	NP_002159	P48735	IDHP_HUMAN	isocitrate dehydrogenase 2 (NADP+),	172		Substrate (By similarity).			2-oxoglutarate metabolic process|glyoxylate cycle|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding	p.R172K(170)|p.R172M(21)|p.R172S(12)|p.R172W(7)|p.R172?(7)|p.R172G(2)		haematopoietic_and_lymphoid_tissue(621)|central_nervous_system(80)|bone(7)|skin(3)	711	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.106)			ATGGGCGTGCCTGCCAATGGT	0.632000			M		GBM								22	36					0	0	0.055883	0	0
NPIP	9284	broad.mit.edu	37	16	15045734	15045734	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr16:15045734A>T	uc002dcy.3	+	8	905	c.905A>T	c.(904-906)GAT>GTT	p.D302V	NPIP_uc002dcx.3_RNA	NM_006985	NP_008916	Q9UND3	NPIP_HUMAN	nuclear pore complex interacting protein	302	Pro-rich.				mRNA transport|protein transport|transmembrane transport	nuclear membrane|nuclear pore					0						CCCTCAGCGGATGATAATCTC	0.557000													4	59					0	0	0.014758	0	0
CACNG3	10368	broad.mit.edu	37	16	24372780	24372780	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr16:24372780G>A	uc002dmf.2	+	4	1744	c.544G>A	c.(544-546)GGA>AGA	p.G182R		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	182	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CTTTTATTTCGGAGCCTTCTC	0.453000													26	119					0	0	0.108266	0	0
CNOT1	23019	broad.mit.edu	37	16	58565875	58565875	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr16:58565875G>A	uc002env.2	-	42	6457	c.6164C>T	c.(6163-6165)ACG>ATG	p.T2055M	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.T2050M|CNOT1_uc002ent.2_Translation_Start_Site|CNOT1_uc010vik.1_Missense_Mutation_p.T1012M	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	2055					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CTGCTGTGGCGTATGTGCCAG	0.423000													16	95					0	0	0.160694	0	0
PER1	5187	broad.mit.edu	37	17	8054005	8054005	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr17:8054005C>T	uc002gkd.2	-	2	258	c.20G>A	c.(19-21)GGG>GAG	p.G7E	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Intron|PER1_uc010vus.1_Missense_Mutation_p.G7E	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	7					circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						CCCATCAGCCCCTTCTAGGGG	0.677000			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					5	23					0	0	0.014758	0	0
TRPV2	51393	broad.mit.edu	37	17	16336965	16336965	+	Silent	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr17:16336965C>T	uc002gpy.2	+	13	2434	c.2067C>T	c.(2065-2067)ACC>ACT	p.T689T	TRPV2_uc002gpz.2_Silent_p.T259T	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	689	Cytoplasmic (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TGATGCTGACCGTTGGCACTA	0.587000													17	71					0	0	0.160694	0	0
HDHD2	84064	broad.mit.edu	37	18	44656634	44656634	+	Missense_Mutation	SNP	T	G	G			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr18:44656634T>G	uc002lcs.2	-	4	509	c.376A>C	c.(376-378)ATT>CTT	p.I126L	HDHD2_uc002lct.2_Missense_Mutation_p.I36L	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	126							hydrolase activity				0						TGATTCAGAATTTGATAATGA	0.353000													7	77					0	0	0.038147	0	0
TICAM1	148022	broad.mit.edu	37	19	4817206	4817206	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr19:4817206T>C	uc002mbi.2	-	2	1435	c.1184A>G	c.(1183-1185)TAT>TGT	p.Y395C		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	395	TIR.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		CACAAAGTTATAGAATTTCTG	0.532000													23	25					0	0	0.062417	0	0
OR10H5	284433	broad.mit.edu	37	19	15905003	15905003	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr19:15905003G>C	uc010xos.1	+	1	145	c.145G>C	c.(145-147)GTC>CTC	p.V49L		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CATGGCCACTGTCTGGAGCGA	0.597000													6	75					0	0	0.029380	0	0
DDA1	79016	broad.mit.edu	37	19	17425150	17425150	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr19:17425150C>T	uc002ngd.2	+	3	215	c.88C>T	c.(88-90)CGA>TGA	p.R30*	DDA1_uc002nge.2_5'UTR	NM_024050	NP_076955	Q9BW61	DDA1_HUMAN	DET1 and DDB1 associated 1	30										ovary(1)	1						CCTGCAGAACCGACGGCCCTC	0.607000													5	36					0	0	0.021553	0	0
IL12RB1	3594	broad.mit.edu	37	19	18191676	18191676	+	Silent	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr19:18191676C>T	uc002nhw.1	-	4	439	c.375G>A	c.(373-375)AAG>AAA	p.K125K	IL12RB1_uc010xqb.1_Silent_p.K125K|IL12RB1_uc002nhx.1_Silent_p.K165K|IL12RB1_uc002nhy.2_Silent_p.K125K	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	125	Extracellular (Potential).|Fibronectin type-III 1.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CCTCAGGAGACTTCTCTGTCT	0.587000													18	45					0	0	0.175082	0	0
VRK2	7444	broad.mit.edu	37	2	58311264	58311264	+	Silent	SNP	A	G	G			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr2:58311264A>G	uc002rzo.2	+	6	922	c.177A>G	c.(175-177)GTA>GTG	p.V59V	VRK2_uc010fcb.2_Silent_p.V59V|VRK2_uc002rzs.2_Silent_p.V59V|VRK2_uc002rzr.2_Silent_p.V59V|VRK2_uc010fcc.2_5'UTR|VRK2_uc002rzv.2_Silent_p.V59V|VRK2_uc010fcd.2_Silent_p.V36V|VRK2_uc002rzp.2_Silent_p.V59V|VRK2_uc010ypg.1_Silent_p.V59V|VRK2_uc002rzq.2_Silent_p.V59V|VRK2_uc002rzu.2_Silent_p.V59V|VRK2_uc002rzt.2_5'UTR|VRK2_uc010yph.1_5'Flank	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	59	Protein kinase.					integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						CAAGACATGTAGTAAAAGTGG	0.279000													12	36					0	0	0.119110	0	0
SLC20A1	6574	broad.mit.edu	37	2	113416617	113416617	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr2:113416617A>G	uc002tib.2	+	7	1440	c.994A>G	c.(994-996)AGG>GGG	p.R332G	SLC20A1_uc002tic.1_Missense_Mutation_p.R144G	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	332	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						AGAGAGAGAGAGGCTTCCCAG	0.517000													3	62					0	0	0.115264	0	0
GLI2	2736	broad.mit.edu	37	2	121684944	121684944	+	Silent	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr2:121684944G>A	uc010flp.2	+	2	186	c.156G>A	c.(154-156)CAG>CAA	p.Q52Q	GLI2_uc010yyu.1_Silent_p.Q52Q|GLI2_uc002tmp.1_Silent_p.Q52Q|GLI2_uc010fln.1_RNA|GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Silent_p.Q52Q|GLI2_uc010flo.1_Intron|GLI2_uc002tmw.1_Silent_p.Q52Q	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	52					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CAGTGCCGCAGCATCTCTTGC	0.502000													10	159					0	0	0.069234	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20616214	20616214	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr20:20616214C>T	uc002wrz.2	-	9	996	c.853G>A	c.(853-855)GAC>AAC	p.D285N	RALGAPA2_uc010gcx.2_5'UTR|RALGAPA2_uc010zsg.1_5'UTR	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	285					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TTCTCATTGTCTCGAGTGGTA	0.343000													21	137					0	0	0.062417	0	0
GNAS	2778	broad.mit.edu	37	20	57415453	57415453	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr20:57415453C>A	uc002xzt.2	+	1	659	c.292C>A	c.(292-294)CCC>ACC	p.P98T	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GCTGTCCCTCCCCGAGTGCCT	0.617000			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			22	52					1.10923e-09	1.19295e-09	0.076483	1	0
DONSON	29980	broad.mit.edu	37	21	34958408	34958408	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr21:34958408G>A	uc002ysk.2	-	3	549	c.482C>T	c.(481-483)ACG>ATG	p.T161M	DONSON_uc002ysn.1_Missense_Mutation_p.T44M|DONSON_uc002ysi.1_Translation_Start_Site|DONSON_uc002ysj.2_Translation_Start_Site|DONSON_uc002ysl.2_Intron|DONSON_uc010gme.2_Missense_Mutation_p.T134M|DONSON_uc002ysm.2_Missense_Mutation_p.T161M	NM_017613	NP_060083	Q9NYP3	DONS_HUMAN	downstream neighbor of SON	161					multicellular organismal development	nucleus				ovary(1)|central_nervous_system(1)	2						AAGGAGTCGCGTTTTAATACT	0.433000											OREG0003565	type=REGULATORY REGION|Gene=DONSON|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	58					0	0	0.038147	0	0
KRTAP10-12	386685	broad.mit.edu	37	21	46117735	46117735	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr21:46117735C>T	uc002zfw.1	+	1	649	c.619C>T	c.(619-621)CGC>TGC	p.R207C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198699	NP_941972	P60413	KR10C_HUMAN	keratin associated protein 10-12	207	19 X 5 AA repeats of C-C-X(3).					keratin filament					0						CAGACCCGCCCGCCGCGTGCC	0.716000													21	60					0	0	0.083992	0	0
GGT3P	2679	broad.mit.edu	37	22	18778652	18778652	+	RNA	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr22:18778652C>T	uc011ago.1	-	2		c.168G>A			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						CCTTGGAGGCCGAGGGCAGCC	0.632000													3	3					0	0	0.014758	0	0
LOC96610	96610	broad.mit.edu	37	22	22749730	22749730	+	RNA	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr22:22749730G>A	uc011aim.1	+	49		c.5727G>A								Parts of antibodies, mostly variable regions.												0						CGGTTCTCAGGCTCCCTCCTT	0.552000													5	51					0	0	0.014758	0	0
DNAJB7	150353	broad.mit.edu	37	22	41257198	41257198	+	Silent	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr22:41257198C>T	uc003azj.2	-	1	933	c.801G>A	c.(799-801)GAG>GAA	p.E267E	XPNPEP3_uc011aox.1_Intron|XPNPEP3_uc003azh.2_Intron|XPNPEP3_uc003azi.2_Intron|XPNPEP3_uc011aoy.1_5'Flank|XPNPEP3_uc003azg.1_Intron|XPNPEP3_uc003azf.1_Intron|XPNPEP3_uc010gyh.1_5'Flank	NM_145174	NP_660157	Q7Z6W7	DNJB7_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 7	267					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)	1						ATATACCTCCCTCATCATTGT	0.423000													13	85					0	0	0.105934	0	0
PBRM1	55193	broad.mit.edu	37	3	52643532	52643532	+	Silent	SNP	T	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr3:52643532T>A	uc003des.2	-	16	2376	c.2364A>T	c.(2362-2364)TCA>TCT	p.S788S	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Silent_p.S788S|PBRM1_uc003der.2_Silent_p.S756S|PBRM1_uc003det.2_Silent_p.S803S|PBRM1_uc003deu.2_Silent_p.S803S|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Silent_p.S788S|PBRM1_uc010hmk.1_Silent_p.S788S|PBRM1_uc003dey.2_Silent_p.S788S|PBRM1_uc003dez.1_Silent_p.S788S|PBRM1_uc003dfb.1_Silent_p.S701S|PBRM1_uc003dfa.1_Silent_p.S134S|PBRM1_uc003dfc.2_Silent_p.S155S	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	788					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		GACTCATGACTGACACAAAAA	0.453000			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								5	70					0	0	0.021553	0	0
ZBTB20	26137	broad.mit.edu	37	3	114070194	114070194	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr3:114070194T>C	uc003ebi.2	-	4	911	c.731A>G	c.(730-732)TAC>TGC	p.Y244C	ZBTB20_uc003ebj.2_Missense_Mutation_p.Y171C|ZBTB20_uc010hqp.2_Missense_Mutation_p.Y171C|ZBTB20_uc003ebk.2_Missense_Mutation_p.Y171C|ZBTB20_uc003ebl.2_Missense_Mutation_p.Y171C|ZBTB20_uc003ebm.2_Missense_Mutation_p.Y171C|ZBTB20_uc003ebn.2_Missense_Mutation_p.Y171C|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	244					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GAGTGCCGAGTAGATCCTGTC	0.667000													11	62					0	0	0.069234	0	0
KY	339855	broad.mit.edu	37	3	134369693	134369693	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr3:134369693G>A	uc010hty.2	-	1	172	c.110C>T	c.(109-111)CCG>CTG	p.P37L	KY_uc011blw.1_Missense_Mutation_p.P37L|KY_uc011blx.1_Missense_Mutation_p.P37L|KY_uc003eqs.1_Intron	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	37						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						CAGCGAGCTCGGGTTCGCCTG	0.682000													5	13					0	0	0.014758	0	0
SERPINI1	5274	broad.mit.edu	37	3	167508323	167508323	+	Silent	SNP	T	C	C			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr3:167508323T>C	uc003ffa.3	+	3	612	c.414T>C	c.(412-414)CAT>CAC	p.H138H	SERPINI1_uc003ffb.3_Silent_p.H138H	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	138					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						CAGTAAATCATGTGGACTTCA	0.363000													21	34					0	0	0.055883	0	0
FAM193A	8603	broad.mit.edu	37	4	2702268	2702268	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr4:2702268A>G	uc010icl.2	+	17	3847	c.3496A>G	c.(3496-3498)ATT>GTT	p.I1166V	FAM193A_uc010ick.2_Missense_Mutation_p.I1366V|FAM193A_uc003gfd.2_Missense_Mutation_p.I1166V|FAM193A_uc011bvm.1_Missense_Mutation_p.I1188V|FAM193A_uc011bvn.1_Missense_Mutation_p.I1166V|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.I1020V	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	1166										ovary(3)	3						CAACAATTCAATTGGTAAATA	0.458000													3	30					0	0	0.115264	0	0
LPHN3	23284	broad.mit.edu	37	4	62453140	62453140	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr4:62453140A>G	uc010ihh.2	+	2	424	c.251A>G	c.(250-252)TAT>TGT	p.Y84C	LPHN3_uc003hcq.3_Missense_Mutation_p.Y84C|LPHN3_uc010ihg.1_Missense_Mutation_p.Y152C	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	84	SUEL-type lectin.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						CCAGATGCCTATAAGATTATG	0.363000													6	18					0	0	0.029380	0	0
ART3	419	broad.mit.edu	37	4	77018807	77018807	+	Silent	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr4:77018807C>T	uc003hjo.2	+	4	911	c.792C>T	c.(790-792)ACC>ACT	p.T264T	ART3_uc003hjk.2_Silent_p.T264T|ART3_uc010ija.1_Silent_p.T264T|ART3_uc003hjn.2_Silent_p.T264T|ART3_uc003hjp.2_RNA|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Silent_p.T234T|ART3_uc010ijc.2_Intron|ART3_uc010ijd.2_Silent_p.T234T	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	264					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GACTAAAAACCGAAAACTGTA	0.328000													21	53					0	0	0.055883	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455100	187455100	+	Missense_Mutation	SNP	C	T	T	rs148793802		TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr4:187455100C>T	uc003izd.1	-	2	814	c.796G>A	c.(796-798)GCC>ACC	p.A266T		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	266	Extracellular (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	ACCATGCTGGCGGGGTCAGAG	0.507000													6	83					0	0	0.038147	0	0
DNAH5	1767	broad.mit.edu	37	5	13736040	13736040	+	Silent	SNP	C	G	G			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr5:13736040C>G	uc003jfd.2	-	67	11499	c.11457G>C	c.(11455-11457)GTG>GTC	p.V3819V	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3819					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.V3819M(1)		ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCCGCGTAGCCACTGGAAGAC	0.443000									Kartagener_syndrome				10	47					0	0	0.058154	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474488	140474488	+	Silent	SNP	C	T	T	rs142513918	byFrequency	TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr5:140474488C>T	uc003lil.2	+	1	252	c.114C>T	c.(112-114)GCC>GCT	p.A38A	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	38	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTCAGTGGCCGAGGAAACGG	0.532000													3	51					0	0	0.115264	0	0
RELL2	285613	broad.mit.edu	37	5	141019513	141019513	+	Missense_Mutation	SNP	G	C	C	rs143590565	byFrequency	TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr5:141019513G>C	uc003lli.2	+	6	1378	c.530G>C	c.(529-531)CGC>CCC	p.R177P	RELL2_uc003llh.2_Missense_Mutation_p.R177P|RELL2_uc003llg.2_Missense_Mutation_p.R111P|RELL2_uc010jgf.2_Missense_Mutation_p.R111P|FCHSD1_uc010jgg.2_3'UTR|FCHSD1_uc003llj.2_RNA|FCHSD1_uc003llk.2_3'UTR	NM_001130029	NP_001123501	Q8NC24	RELL2_HUMAN	RELT-like 2	177						integral to membrane|plasma membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTGAGAAGCGCTATGGACTG	0.647000													3	55					0	0	0.115264	0	0
TNXB	7148	broad.mit.edu	37	6	32030161	32030161	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr6:32030161G>A	uc003nzl.2	-	20	7143	c.6941C>T	c.(6940-6942)GCG>GTG	p.A2314V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2376	Fibronectin type-III 16.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTCAGGGGTCGCATCTGTCAC	0.612000													3	26					0	0	0.115264	0	0
IMPG1	3617	broad.mit.edu	37	6	76657112	76657112	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr6:76657112C>T	uc003pik.1	-	14	2093	c.1963G>A	c.(1963-1965)GGG>AGG	p.G655R		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	655	SEA 2.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TCCAAGACCCCGTGCACAGCC	0.448000													13	47					0	0	0.093190	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439615	150439615	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr7:150439615G>A	uc003whr.1	+	3	740	c.388G>A	c.(388-390)GCC>ACC	p.A130T	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	130	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGACACAGTGGCCATCAGGAA	0.592000													63	65					0	0	0.139131	0	0
PRKDC	5591	broad.mit.edu	37	8	48744441	48744441	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr8:48744441C>A	uc003xqi.2	-	61	8256	c.8199G>T	c.(8197-8199)ATG>ATT	p.M2733I	PRKDC_uc003xqj.2_Missense_Mutation_p.M2733I|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2733	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CCTGGTCCCTCATAAACCGTC	0.542000								NHEJ					26	154					6.07407e-21	6.65812e-21	0.125774	1	0
EPPK1	83481	broad.mit.edu	37	8	144945366	144945366	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr8:144945366G>A	uc003zaa.1	-	1	2069	c.2056C>T	c.(2056-2058)CGC>TGC	p.R686C		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	686	Plectin 13.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GTGACAGCGCGCTCAGCCGAC	0.617000													8	27					0	0	0.047766	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606296	84606296	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr9:84606296T>A	uc004amn.2	+	4	958	c.911T>A	c.(910-912)TTA>TAA	p.L304*		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	304						integral to membrane					0						CCATCTGCTTTACCACCGGAA	0.468000													58	216					0	0	0.139131	0	0
SMC2	10592	broad.mit.edu	37	9	106860785	106860785	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr9:106860785G>C	uc004bbv.2	+	4	665	c.377G>C	c.(376-378)AGA>ACA	p.R126T	SMC2_uc004bbu.1_Missense_Mutation_p.R126T|SMC2_uc004bbw.2_Missense_Mutation_p.R126T|SMC2_uc011lvl.1_Missense_Mutation_p.R126T|SMC2_uc010mtg.1_5'UTR|SMC2_uc010mth.1_Missense_Mutation_p.R76T|SMC2_uc004bbx.2_Missense_Mutation_p.R126T	NM_001042551	NP_001036016	O95347	SMC2_HUMAN	structural maintenance of chromosomes 2	126					cell division|mitotic chromosome condensation|symbiosis, encompassing mutualism through parasitism	condensin complex|cytoplasm|nuclear chromosome	ATP binding|protein heterodimerization activity			ovary(4)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|breast(1)	9						AACAACACCAGAGTACAGGAT	0.338000													6	113					0	0	0.029380	0	0
NXF3	56000	broad.mit.edu	37	X	102338548	102338548	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chrX:102338548C>T	uc004eju.2	-	4	495	c.424G>A	c.(424-426)GTC>ATC	p.V142I	NXF3_uc010noi.1_5'UTR|NXF3_uc011mrw.1_Missense_Mutation_p.V142I|NXF3_uc011mrx.1_Missense_Mutation_p.V53I	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	142	RRM.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TCAACTGGGACGAAGGGTACA	0.458000													35	54					0	0	0.080422	0	0
ZNF717	100131827	broad.mit.edu	37	3	75790810	75790811	+	Frame_Shift_Ins	INS	-	T	T	rs76346895		TCGA-DU-5849-01A-11D-1705-08	TCGA-DU-5849-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	bcde1486-c728-4841-ab69-c8cb16706fc2	189c09ae-f5aa-4b68-89d8-65eb6bc57683	g.chr3:75790810_75790811insT	uc011bgi.1	-	3	457_458	c.134_135insA	c.(133-135)ACCfs	p.T45fs	ZNF717_uc003dpw.3_RNA	NM_001128223	NP_001121695	C9JSV9	C9JSV9_HUMAN	zinc finger protein 717	45					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						CCCTGTACAGGGTCCTCTGAGC	0.510													2	4	---	---	---	---					
