Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LRRC8B	23507	broad.mit.edu	37	1	90048483	90048483	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr1:90048483C>T	uc001dni.2	+	7	781	c.274C>T	c.(274-276)CGA>TGA	p.R92*	LRRC8B_uc001dnh.2_Nonsense_Mutation_p.R92*|LRRC8B_uc001dnj.2_Nonsense_Mutation_p.R92*	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	92						integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		GCTCCCCCTCCGAATTCAGAA	0.498000													53	9					0	0	1	0	0
FCRL3	115352	broad.mit.edu	37	1	157667654	157667654	+	Silent	SNP	C	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr1:157667654C>A	uc001frb.2	-	5	646	c.354G>T	c.(352-354)CTG>CTT	p.L118L	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.L118L|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Silent_p.L118L	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	118	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CCTGACATCTCAGAATGACAT	0.423000													3	86					6.4e-05	6.59104e-05	1	1	0
KIAA1217	56243	broad.mit.edu	37	10	24669943	24669943	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr10:24669943G>A	uc001iru.3	+	3	903	c.500G>A	c.(499-501)CGT>CAT	p.R167H	KIAA1217_uc001irs.2_Missense_Mutation_p.R87H|KIAA1217_uc001irt.3_Missense_Mutation_p.R167H|KIAA1217_uc010qcy.1_Missense_Mutation_p.R167H|KIAA1217_uc010qcz.1_Missense_Mutation_p.R167H|KIAA1217_uc001irv.1_Missense_Mutation_p.R17H|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	167					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGCCGGACTCGTGCGAGCCTT	0.532000													10	31					0	0	1	0	0
SVIL	6840	broad.mit.edu	37	10	29820187	29820187	+	Silent	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr10:29820187G>A	uc001iut.1	-	10	2793	c.2040C>T	c.(2038-2040)GTC>GTT	p.V680V	SVIL_uc001iuu.1_Silent_p.V286V	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	680					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				ACTTGCCATCGACAGTTGGCG	0.358000													12	37					0	0	1	0	0
C10orf91	170393	broad.mit.edu	37	10	134259250	134259250	+	Missense_Mutation	SNP	C	T	T	rs112176383		TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr10:134259250C>T	uc001llm.2	+	2	120	c.80C>T	c.(79-81)ACG>ATG	p.T27M		NM_173541	NP_775812	Q5T1B1	CJ091_HUMAN	hypothetical protein LOC170393	27										ovary(1)	1		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;6.95e-05)|Epithelial(32;0.000142)|all cancers(32;0.000162)		GCTTGCTGGACGCATGACCAG	0.607000													40	57					0	0	1	0	0
ALDH3B2	222	broad.mit.edu	37	11	67433865	67433865	+	Silent	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr11:67433865G>A	uc001omr.2	-	5	598	c.159C>T	c.(157-159)TGC>TGT	p.C53C	ALDH3B2_uc001oms.2_Silent_p.C53C|ALDH3B2_uc009ysa.1_Silent_p.C53C	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	53					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	TCAGCACCACGCAACTCCCTG	0.672000													3	8					0	0	1	0	0
ZW10	9183	broad.mit.edu	37	11	113639586	113639586	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr11:113639586A>G	uc001poe.2	-	2	246	c.209T>C	c.(208-210)ATT>ACT	p.I70T	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	70	Interaction with RINT1.|Interaction with ZWINT.|Potential.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		CAGCAGGTCAATGTCTTCAGA	0.463000													21	90					0	0	1	0	0
CADM1	23705	broad.mit.edu	37	11	115080343	115080343	+	Silent	SNP	G	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr11:115080343G>T	uc001ppi.3	-	8	1158	c.1029C>A	c.(1027-1029)ACC>ACA	p.T343T	CADM1_uc001ppf.3_Intron|CADM1_uc001ppk.3_Intron|CADM1_uc001ppj.3_Intron|CADM1_uc001pph.3_Silent_p.T95T	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	343	Extracellular (Potential).			PPTTIPPPTTTTTTTTTTTTTILTIIT -> TTATTEPAVH GLTQLPNSAEELDSEDLS (in Ref. 3; BAC11657).	adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		tggtggtggtggttgttgtgg	0.269000													4	36					0.00024832	0.000251972	1	1	0
DPY19L2	283417	broad.mit.edu	37	12	64020270	64020270	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr12:64020270G>C	uc001srp.1	-	7	1021	c.840C>G	c.(838-840)TGC>TGG	p.C280W	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	280	Helical; (Potential).				multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		TGAAAAAGAAGCACAGTACTG	0.313000													10	17					0	0	1	0	0
C12orf26	84190	broad.mit.edu	37	12	82828486	82828486	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr12:82828486G>A	uc001szq.2	+	7	1408	c.1387G>A	c.(1387-1389)GTT>ATT	p.V463I		NM_032230	NP_115606	Q8N6Q8	CL026_HUMAN	hypothetical protein LOC84190	463											0						ATTGGAGCGGGTTGCAGCTGG	0.373000													28	54					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124408866	124408866	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr12:124408866G>A	uc001uft.3	+	66	11324	c.11299G>A	c.(11299-11301)GCT>ACT	p.A3767T	DNAH10_uc001ufu.3_5'Flank	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3767					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AAAGCCCTGCGCTTGGTTGTC	0.403000													14	21					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	A	A	rs12366766		TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr12:132547087G>A	uc001ujn.2	+	46	8210	c.8175G>A	c.(8173-8175)CAG>CAA	p.Q2725Q	EP400_uc001ujl.2_Silent_p.Q2724Q|EP400_uc001ujm.2_Silent_p.Q2644Q|EP400_uc001ujp.2_5'UTR	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Poly-Gln.|Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.289000													3	23					0	0	1	0	0
EDDM3B	64184	broad.mit.edu	37	14	21238446	21238446	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr14:21238446G>C	uc001vyd.2	+	2	235	c.137G>C	c.(136-138)AGA>ACA	p.R46T		NM_022360	NP_071755	P56851	EP3B_HUMAN	human epididymis-specific 3 beta precursor	46					spermatid development	extracellular region				ovary(1)	1						CGAGAATTCAGAGAGTACAAA	0.393000													24	82					0	0	1	0	0
TTC8	123016	broad.mit.edu	37	14	89338726	89338726	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr14:89338726A>G	uc010ath.2	+	13	1459	c.1325A>G	c.(1324-1326)AAC>AGC	p.N442S	TTC8_uc001xxl.2_Missense_Mutation_p.N187S|TTC8_uc010ati.2_Missense_Mutation_p.N228S|TTC8_uc001xxm.2_Missense_Mutation_p.N386S|TTC8_uc010atj.2_Missense_Mutation_p.N161S|TTC8_uc001xxi.2_Missense_Mutation_p.N426S|TTC8_uc001xxj.2_Missense_Mutation_p.N416S|TTC8_uc001xxk.2_Missense_Mutation_p.N386S	NM_198309	NP_938051	Q8TAM2	TTC8_HUMAN	tetratricopeptide repeat domain 8 isoform B	452	TPR 7.				cilium assembly|establishment of anatomical structure orientation|sensory processing	BBSome|centrosome|cilium membrane|microtubule basal body	protein binding				0						GCTCTGGTCAACAACAACAAC	0.537000									Bardet-Biedl_syndrome				3	89					0	0	1	0	0
E4F1	1877	broad.mit.edu	37	16	2279638	2279638	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr16:2279638C>T	uc002cpm.2	+	3	425	c.377C>T	c.(376-378)TCT>TTT	p.S126F	E4F1_uc010bsi.2_Missense_Mutation_p.S126F|E4F1_uc010bsj.2_Missense_Mutation_p.S126F	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	126					cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						GAGGCGGCCTCTCTGGCAGCA	0.617000													40	97					0	0	1	0	0
CCDC113	29070	broad.mit.edu	37	16	58292428	58292428	+	Splice_Site	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr16:58292428G>A	uc002ene.2	+	4	625	c.546_splice	c.e4+1	p.R182_splice	CCDC113_uc010vid.1_Splice_Site_p.R128_splice	NM_014157	NP_054876	Q9H0I3	CC113_HUMAN	coiled-coil domain containing 113 isoform 1							protein complex					0						CCGCCGGAGGGTAAGTTGGCA	0.418000													17	24					0	0	1	0	0
SF3B3	23450	broad.mit.edu	37	16	70601345	70601345	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr16:70601345C>T	uc002ezf.2	+	21	3069	c.2858C>T	c.(2857-2859)GCC>GTC	p.A953V		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	953					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				GCTGCTATTGCCCCATTCCAG	0.493000													3	80					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10404045	10404045	+	Missense_Mutation	SNP	C	T	T	rs142605633		TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr17:10404045C>T	uc002gmo.2	-	28	3857	c.3763G>A	c.(3763-3765)GCT>ACT	p.A1255T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1255	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCTTCTAGAGCGCGGCACATC	0.453000													16	57					0	0	1	0	0
DLX4	1748	broad.mit.edu	37	17	48051291	48051291	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr17:48051291C>T	uc002ipv.2	+	3	978	c.707C>T	c.(706-708)TCG>TTG	p.S236L	DLX4_uc002ipw.2_Missense_Mutation_p.S164L	NM_138281	NP_612138	Q92988	DLX4_HUMAN	distal-less homeobox 4 isoform a	236					multicellular organismal development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTCCTGGCTTCGCCTCAGATG	0.617000													20	22					0	0	1	0	0
ABCA6	23460	broad.mit.edu	37	17	67080415	67080415	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr17:67080415G>C	uc002jhw.1	-	34	4517	c.4342C>G	c.(4342-4344)CAG>GAG	p.Q1448E		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1448	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					ATTTGCTGCTGCCCTGTGGGG	0.483000													3	49					0	0	1	0	0
FAM38B	63895	broad.mit.edu	37	18	10677809	10677809	+	Silent	SNP	A	G	G			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr18:10677809A>G	uc002kor.3	-	11	1688	c.1548T>C	c.(1546-1548)AAT>AAC	p.N516N	FAM38B_uc002koq.2_Silent_p.N351N	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2559						integral to membrane	ion channel activity			ovary(1)	1						TTCGAGTAATATTTTTAAGAG	0.323000													5	53					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4511137	4511137	+	Silent	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr19:4511137G>A	uc002mar.1	-	3	2793	c.2793C>T	c.(2791-2793)ACC>ACT	p.T931T	PLIN4_uc010dub.1_5'UTR	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	931	27 X 33 AA approximate tandem repeat.|26.					lipid particle|plasma membrane					0						CTGTCTGGACGGTCCCTTTGG	0.597000													12	52					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8808420	8808420	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr19:8808420C>T	uc002mkl.2	-	1	753	c.632G>A	c.(631-633)GGC>GAC	p.G211D		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	211						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CAGGTTGTAGCCCTGGAAGAC	0.682000													24	22					0	0	1	0	0
CIC	23152	broad.mit.edu	37	19	42791721	42791721	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr19:42791721C>T	uc002otf.1	+	5	647	c.607C>T	c.(607-609)CCC>TCC	p.P203S		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	203	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CATCCGGCGGCCCATGAATGC	0.627000			T	DUX4	soft tissue sarcoma								12	24					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230714	21230714	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr2:21230714A>T	uc002red.2	-	26	9154	c.9026T>A	c.(9025-9027)CTG>CAG	p.L3009Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3009					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCTCCAAACAGTGCCATGCC	0.418000													12	50					0	0	1	0	0
PPIG	9360	broad.mit.edu	37	2	170460747	170460747	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr2:170460747G>A	uc002uez.2	+	4	332	c.112G>A	c.(112-114)GAG>AAG	p.E38K	PPIG_uc010fpx.2_Missense_Mutation_p.E38K|PPIG_uc010fpy.2_Intron|PPIG_uc002ufa.2_Missense_Mutation_p.E38K|PPIG_uc002ufb.2_Missense_Mutation_p.E38K|PPIG_uc002ufc.1_Missense_Mutation_p.E38K|PPIG_uc002ufd.2_Missense_Mutation_p.E38K	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	38	PPIase cyclophilin-type.				protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	CAAAACATGCGAGAACTTTCG	0.343000													28	94					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								29	44					0	0	1	0	0
SLC11A1	6556	broad.mit.edu	37	2	219258872	219258872	+	Silent	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr2:219258872G>A	uc002vhv.2	+	13	1684	c.1344G>A	c.(1342-1344)ACG>ACA	p.T448T	SLC11A1_uc010zkc.1_Silent_p.T381T|SLC11A1_uc002vhu.1_Silent_p.T243T|SLC11A1_uc002vhw.2_Silent_p.T330T|SLC11A1_uc010fvr.2_Silent_p.T243T	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	448	Helical; (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCATCCTCACGTTCACCAGCA	0.473000													8	45					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14414855	14414855	+	RNA	SNP	A	G	G	rs141732548	by1000genomes	TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr21:14414855A>G	uc002yiy.3	+	2		c.292A>G			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						GCCAATGGCCATGCAGAAGTA	0.448000													4	32					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14414902	14414902	+	RNA	SNP	G	A	A	rs2821609	by1000genomes	TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr21:14414902G>A	uc002yiy.3	+	2		c.339G>A			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						CCAGCTTGACGTCCTTGATGG	0.443000													3	18					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	23006961	23006961	+	RNA	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr22:23006961C>T	uc011aim.1	+	119		c.7564C>T								Parts of antibodies, mostly variable regions.												0						GGCTCTGCTCCTCCTCACCCT	0.627000													3	6					0	0	1	0	0
ULK4	54986	broad.mit.edu	37	3	41953050	41953050	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr3:41953050C>T	uc003ckv.3	-	10	1199	c.998G>A	c.(997-999)GGT>GAT	p.G333D	ULK4_uc003ckw.2_Missense_Mutation_p.G333D|ULK4_uc003ckx.1_Missense_Mutation_p.G333D	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	333							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GAAAGAGTGACCTAGTGGTTG	0.408000													10	100					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42754752	42754752	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr3:42754752C>T	uc003cly.3	-	14	1859	c.1775G>A	c.(1774-1776)CGA>CAA	p.R592Q		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	592	Potential.									ovary(1)	1						GGTGCGGTGTCGCTCCTCCTG	0.602000													23	97					0	0	1	0	0
CBLB	868	broad.mit.edu	37	3	105495351	105495351	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr3:105495351T>A	uc003dwc.2	-	4	777	c.455A>T	c.(454-456)CAC>CTC	p.H152L	CBLB_uc011bhi.1_Missense_Mutation_p.H174L|CBLB_uc003dwd.1_Missense_Mutation_p.H152L|CBLB_uc003dwe.1_Missense_Mutation_p.H152L|CBLB_uc011bhj.1_Intron	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	152	Cbl-PTB.|4H.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						TGCCAGCATGTGACTGAAGAT	0.378000			Mis S		AML								15	95					0	0	1	0	0
NMD3	51068	broad.mit.edu	37	3	160952983	160952983	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr3:160952983G>A	uc003feb.1	+	7	679	c.560G>A	c.(559-561)CGT>CAT	p.R187H	NMD3_uc003fec.2_Missense_Mutation_p.R187H|NMD3_uc003fed.1_Missense_Mutation_p.R187H|NMD3_uc010hwh.2_Missense_Mutation_p.R7H	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	187					protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			AATACACTTCGTATCAAAGAG	0.249000													26	29					0	0	1	0	0
TTC14	151613	broad.mit.edu	37	3	180327531	180327531	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr3:180327531A>G	uc003fkk.2	+	12	1646	c.1514A>G	c.(1513-1515)CAT>CGT	p.H505R	TTC14_uc003fkl.2_3'UTR|TTC14_uc003fkm.2_Missense_Mutation_p.H505R	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	505	Ser-rich.						RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			CATAAGAAACATAAGAGGAAC	0.413000													17	54					0	0	1	0	0
DSPP	1834	broad.mit.edu	37	4	88534157	88534157	+	Silent	SNP	T	C	C			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr4:88534157T>C	uc003hqu.2	+	4	939	c.819T>C	c.(817-819)AGT>AGC	p.S273S		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	273					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		GAAAAGACAGTAGTAATAACA	0.438000													22	24					0	0	1	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	169649	169649	+	Missense_Mutation	SNP	G	A	A	rs139086978		TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr5:169649G>A	uc003jak.2	+	12	2653	c.2603G>A	c.(2602-2604)CGG>CAG	p.R868Q		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	868	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity	p.R868Q(1)|p.R59Q(1)		skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CACTTCCTCCGGGAGCTGGAG	0.622000													30	50					0	0	1	0	0
SLC6A3	6531	broad.mit.edu	37	5	1409936	1409936	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr5:1409936C>T	uc003jck.2	-	10	1419	c.1298G>A	c.(1297-1299)GGG>GAG	p.G433E		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	433					cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	ATCGATGAGCCCGGTGATCAC	0.612000													18	37					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004891	41004891	+	Silent	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr5:41004891G>A	uc003jmj.3	-	36	4486	c.3996C>T	c.(3994-3996)TCC>TCT	p.S1332S	HEATR7B2_uc003jmi.3_Silent_p.S887S	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1332							binding			ovary(6)|central_nervous_system(2)	8						GAGGAGCCCCGGATGCTGTGT	0.478000													8	53					0	0	1	0	0
CCDC99	54908	broad.mit.edu	37	5	169026067	169026067	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr5:169026067C>T	uc003mae.3	+	10	1507	c.1228C>T	c.(1228-1230)CTT>TTT	p.L410F	CCDC99_uc010jjj.2_Missense_Mutation_p.L339F|CCDC99_uc011deq.1_Missense_Mutation_p.L227F|CCDC99_uc010jjk.2_Missense_Mutation_p.L136F	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	410	Potential.				cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGAGCGAAAACTTTTTGCAAA	0.353000													5	56					0	0	1	0	0
N4BP3	23138	broad.mit.edu	37	5	177547253	177547253	+	Silent	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr5:177547253G>A	uc003mik.1	+	3	652	c.405G>A	c.(403-405)GCG>GCA	p.A135A	N4BP3_uc003mil.1_5'Flank	NM_015111	NP_055926	O15049	N4BP3_HUMAN	Nedd4 binding protein 3	135						cytoplasmic vesicle membrane					0	all_cancers(89;0.00294)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAAGTCTGGCGTCCCACAAAG	0.682000													23	24					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46830657	46830657	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr6:46830657C>T	uc003oyo.3	-	15	2456	c.2167G>A	c.(2167-2169)GCC>ACC	p.A723T	GPR116_uc011dwj.1_Missense_Mutation_p.A278T|GPR116_uc011dwk.1_Missense_Mutation_p.A152T|GPR116_uc003oyp.3_Missense_Mutation_p.A581T|GPR116_uc003oyq.3_Missense_Mutation_p.A723T|GPR116_uc010jzi.1_Missense_Mutation_p.A395T	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	723	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TTTATTGGGGCAGAGATGCAG	0.512000													43	132					0	0	1	0	0
PGAM2	5224	broad.mit.edu	37	7	44102503	44102503	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr7:44102503G>C	uc003tjs.2	-	3	657	c.622C>G	c.(622-624)CTG>GTG	p.L208V		NM_000290	NP_000281	P15259	PGAM2_HUMAN	phosphoglycerate mutase 2	208					gluconeogenesis|glycolysis|striated muscle contraction	cytosol	2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity				0						GGCAGGTTCAGCTCCATGATC	0.557000													8	44					0	0	1	0	0
LMOD2	442721	broad.mit.edu	37	7	123302491	123302491	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr7:123302491G>A	uc003vky.2	+	2	1008	c.851G>A	c.(850-852)GGG>GAG	p.G284E		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	284						cytoskeleton	actin binding|tropomyosin binding				0						ACGGGAAAGGGGATCCTGGCC	0.542000													7	90					0	0	1	0	0
GALNTL5	168391	broad.mit.edu	37	7	151711757	151711757	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr7:151711757T>A	uc003wkp.2	+	8	1278	c.1055T>A	c.(1054-1056)ATA>AAA	p.I352K	GALNTL5_uc003wkq.2_Missense_Mutation_p.I103K|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.I241K	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	352	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		CAACTCTTTATAATCCCCTGC	0.393000													44	64					0	0	1	0	0
KIFC2	90990	broad.mit.edu	37	8	145694030	145694030	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr8:145694030G>A	uc003zcz.2	+	9	1065	c.1000G>A	c.(1000-1002)GCA>ACA	p.A334T	CYHR1_uc003zcy.2_5'Flank	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	334	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			TGGGCAGCTGGCAGGTAAGGG	0.652000													9	29					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	122075489	122075489	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr9:122075489G>A	uc004bkc.2	-	2	601	c.145C>T	c.(145-147)CAC>TAC	p.H49Y	DBC1_uc004bkd.2_Missense_Mutation_p.H49Y	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	49					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CTGGAGTGGTGGAAAGGCCCC	0.502000													7	46					0	0	1	0	0
DENND1A	57706	broad.mit.edu	37	9	126319963	126319963	+	Silent	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr9:126319963C>T	uc004bnz.1	-	13	1112	c.879G>A	c.(877-879)CTG>CTA	p.L293L	DENND1A_uc011lzl.1_Intron|DENND1A_uc004bny.1_Silent_p.L110L|DENND1A_uc011lzm.1_Silent_p.L261L|DENND1A_uc004boa.1_Silent_p.L293L|DENND1A_uc004bob.1_Silent_p.L263L|DENND1A_uc004boc.2_Silent_p.L261L	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	293						cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						GCCTGTTCTTCAGGGAAGAGA	0.537000													5	25					0	0	1	0	0
NOTCH1	4851	broad.mit.edu	37	9	139399401	139399401	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr9:139399401G>T	uc004chz.2	-	26	4742	c.4742C>A	c.(4741-4743)CCG>CAG	p.P1581Q	NOTCH1_uc004cia.1_Missense_Mutation_p.P811Q	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1581	Extracellular (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity	p.M1581del(2)|p.M1581_P1582del(1)|p.M1581_P1582insPRYEL(1)|p.M1581_P1582insLMHLAF(1)		haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CTGCTCCGGCGGCATCAGCAC	0.682000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			2	3					0.0016	0.0016	1	1	0
NOTCH1	4851	broad.mit.edu	37	9	139412252	139412252	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr9:139412252C>T	uc004chz.2	-	8	1393	c.1393G>A	c.(1393-1395)GCC>ACC	p.A465T		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	465	Extracellular (Potential).|EGF-like 12; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		AGGCAGGTGGCGTCGTTCTGG	0.672000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			6	51					0	0	1	0	0
ZBED1	9189	broad.mit.edu	37	X	2407265	2407265	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:2407265T>A	uc004cqg.2	-	2	1697	c.1496A>T	c.(1495-1497)GAA>GTA	p.E499V	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Missense_Mutation_p.E499V	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	499						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTTGGCCTCTTCCACCACGCG	0.637000													47	49					0	0	1	0	0
MAP7D2	256714	broad.mit.edu	37	X	20033421	20033421	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:20033421G>A	uc004czr.1	-	11	1565	c.1546C>T	c.(1546-1548)CGG>TGG	p.R516W	MAP7D2_uc004czq.1_Missense_Mutation_p.R401W|MAP7D2_uc011mji.1_Missense_Mutation_p.R464W|MAP7D2_uc010nfo.1_Missense_Mutation_p.R557W|MAP7D2_uc011mjj.1_Missense_Mutation_p.R471W	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	516										ovary(2)|breast(1)	3						GCTACCTCCCGGGCCTTTGTT	0.463000													16	72					0	0	1	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998600	27998600	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:27998600C>A	uc004dbx.1	-	1	967	c.852G>T	c.(850-852)AAG>AAT	p.K284N		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	284	WD 3.									ovary(3)|skin(1)	4						GTCCCCTGTGCTTGGCCACAC	0.517000													15	60					1.02788e-11	1.07461e-11	1	1	0
WAS	7454	broad.mit.edu	37	X	48542340	48542340	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:48542340A>G	uc004dkm.3	+	1	155	c.98A>G	c.(97-99)CAG>CGG	p.Q33R		NM_000377	NP_000368	P42768	WASP_HUMAN	Wiskott-Aldrich syndrome protein	33					blood coagulation|defense response|epidermis development|immune response|T cell receptor signaling pathway	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			ovary(1)	1		all_lung(315;1.27e-10)				CACGAGAACCAGCGACTCTTT	0.557000			Mis|N|F|S			lymphoma			Wiskott-Aldrich_syndrome				9	63					0	0	1	0	0
NUDT10	170685	broad.mit.edu	37	X	51075880	51075880	+	Silent	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:51075880G>A	uc004dph.2	+	2	283	c.63G>A	c.(61-63)GCG>GCA	p.A21A	NUDT10_uc004dpi.3_Silent_p.A21A	NM_153183	NP_694853	Q8NFP7	NUD10_HUMAN	nudix-type motif 10	21	Nudix hydrolase.					cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					AGCGGGCGGCGTGCCTGTGCT	0.672000													12	9					0	0	1	0	0
ITIH5L	347365	broad.mit.edu	37	X	54777700	54777700	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:54777700T>C	uc004dtj.2	-	12	3496	c.3466A>G	c.(3466-3468)ACT>GCT	p.T1156A		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	1156					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						ATGGTGATAGTATAGGCCCGG	0.592000													24	25					0	0	1	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64721755	64721755	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:64721755C>T	uc010nko.2	+	5	1153	c.1144C>T	c.(1144-1146)CGC>TGC	p.R382C		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	382							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						TGATGAGCTCCGCATCAGTGC	0.522000													7	15					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91090710	91090710	+	Silent	SNP	C	T	T			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:91090710C>T	uc004efk.1	+	1	1052	c.207C>T	c.(205-207)ACC>ACT	p.T69T	PCDH11X_uc004efl.1_Silent_p.T69T|PCDH11X_uc004efo.1_Silent_p.T69T|PCDH11X_uc010nmv.1_Silent_p.T69T|PCDH11X_uc004efm.1_Silent_p.T69T|PCDH11X_uc004efn.1_Silent_p.T69T|PCDH11X_uc004efh.1_Silent_p.T69T|PCDH11X_uc004efj.1_Silent_p.T69T	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	69	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						TGTACAAGACCGGAGATGTGC	0.458000													27	134					0	0	1	0	0
RGAG1	57529	broad.mit.edu	37	X	109696415	109696415	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:109696415G>A	uc004eor.1	+	3	2816	c.2570G>A	c.(2569-2571)GGG>GAG	p.G857E	RGAG1_uc011msr.1_Missense_Mutation_p.G857E	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	857										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GCCTCTGGAGGGATGTCCATG	0.527000													96	143					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135405538	135405538	+	Silent	SNP	G	A	A			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:135405538G>A	uc004ezu.1	+	5	963	c.672G>A	c.(670-672)AGG>AGA	p.R224R	GPR112_uc010nsb.1_Intron	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	224	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTGTTGACAGGACACTGCGCT	0.433000													12	131					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20744542	20744546	+	RNA	DEL	CGCAC	-	-			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr17:20744542_20744546delCGCAC	uc010crb.1	+	1		c.202_206delCGCAC								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		CCTCCTCGGGCGCACCGCACCCGGG	0.722													10	10	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42793381	42793381	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr19:42793381delT	uc002otf.1	+	8	1223	c.1183delT	c.(1183-1185)TATfs	p.Y395fs		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	395					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				TTCTACCCAGTATGGAGCTCC	0.657			T	DUX4	soft tissue sarcoma								37	26	---	---	---	---					
ZNF292	23036	broad.mit.edu	37	6	87967233	87967233	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chr6:87967233delC	uc003plm.3	+	8	3927	c.3886delC	c.(3886-3888)CATfs	p.H1296fs		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1296					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		TAATACAAATCATTATTCCTC	0.378													8	11	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			4	6	---	---	---	---					
TBC1D8B	54885	broad.mit.edu	37	X	106046201	106046201	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DU-6400-01A-12D-1705-08	TCGA-DU-6400-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	44fb8d94-aa0a-4da3-bf17-322889da1fb2	e2693558-ff23-4532-9d26-b6fe815e9934	g.chrX:106046201delG	uc004emo.2	+	1	283	c.118delG	c.(118-120)GGGfs	p.G40fs	TBC1D8B_uc004emm.2_Frame_Shift_Del_p.G40fs|TBC1D8B_uc004emn.2_Frame_Shift_Del_p.G40fs	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	40						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GGAAGGCGGAGGGGGGCTCAC	0.577													15	23	---	---	---	---					
