Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VWA1	64856	broad.mit.edu	37	1	1374627	1374627	+	Silent	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:1374627G>A	uc001afs.2	+	3	1018	c.798G>A	c.(796-798)ACG>ACA	p.T266T	VWA1_uc001afr.2_Silent_p.T54T	NM_022834	NP_073745	Q6PCB0	VWA1_HUMAN	von Willebrand factor A domain containing 1	266	Fibronectin type-III 1.					basement membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GGAACGCCACGGACTGGATCT	0.697													10	14					0	0	0.020292	0	0
MFN2	9927	broad.mit.edu	37	1	12071583	12071583	+	Silent	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:12071583C>T	uc001atn.3	+	19	2688	c.2235C>T	c.(2233-2235)CTC>CTT	p.L745L	MFN2_uc009vni.2_Silent_p.L745L	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	745	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		ACAGTGAGCTCAACATGTTCA	0.488													46	75					0	0	0.014410	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943051	12943051	+	Silent	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:12943051C>T	uc001aun.2	-	2	236	c.165G>A	c.(163-165)AAG>AAA	p.K55K		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	55										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCACCATCAGCTTCAGGGCCT	0.602													5	139					0	0	0.001984	0	0
NBPF1	55672	broad.mit.edu	37	1	16893743	16893743	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:16893743A>G	uc009vos.1	-	26	3883	c.2995T>C	c.(2995-2997)TGC>CGC	p.C999R	NBPF1_uc009vot.1_Missense_Mutation_p.C382R|NBPF1_uc001ayz.1_Missense_Mutation_p.C382R|NBPF1_uc010oce.1_Missense_Mutation_p.C653R	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	999	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TAGGGCTGGCATGAGTCAGTC	0.478													51	837					0	0	0.014410	0	0
MST1P2	11209	broad.mit.edu	37	1	16974549	16974549	+	RNA	SNP	C	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:16974549C>G	uc009vow.2	+	5		c.1359C>G			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GGGCTGAGTGCAGCGCCTGCT	0.692													4	75					0	0	0.021553	0	0
JAK1	3716	broad.mit.edu	37	1	65323387	65323387	+	Silent	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:65323387G>A	uc001dbu.1	-	10	1659	c.1410C>T	c.(1408-1410)ACC>ACT	p.T470T	JAK1_uc009wam.1_Silent_p.T458T	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	470	SH2.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		TGTCAAAGTCGGTGCAGCTCC	0.527			Mis		ALL								3	69					0	0	0.021553	0	0
LRRC8D	55144	broad.mit.edu	37	1	90401127	90401127	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:90401127C>G	uc001dnm.2	+	3	2925	c.2500C>G	c.(2500-2502)CTT>GTT	p.L834V	LRRC8D_uc001dnn.2_Missense_Mutation_p.L834V	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	834						integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		GGAAGATCACCTTTTTGATAC	0.478													51	65					0	0	0.014410	0	0
LPPR4	9890	broad.mit.edu	37	1	99753520	99753520	+	Splice_Site	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:99753520G>C	uc001dse.2	+	2	329	c.223_splice	c.e2-1	p.L75_splice	LPPR4_uc010oue.1_Splice_Site_p.L75_splice	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1								phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		TTCATTCTTAGTTGCCTATAT	0.433													5	111					0	0	0.003080	0	0
GJA8	2703	broad.mit.edu	37	1	147380446	147380446	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:147380446G>A	uc001epu.1	+	2	427	c.364G>A	c.(364-366)GGC>AGC	p.G122S		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	122	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GGGGACTAACGGCGGCCCGGA	0.652													3	77					0	0	0.004672	0	0
GJA8	2703	broad.mit.edu	37	1	147381232	147381232	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:147381232G>C	uc001epu.1	+	2	1213	c.1150G>C	c.(1150-1152)GAA>CAA	p.E384Q		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	384	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GGGTGAAAAAGAAGAGCCGCA	0.582													7	6					0	0	0.003080	0	0
FLG2	388698	broad.mit.edu	37	1	152328282	152328282	+	Silent	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:152328282T>C	uc001ezw.3	-	3	2053	c.1980A>G	c.(1978-1980)TCA>TCG	p.S660S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	660	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCTGAGCCTGATCCATATT	0.488													9	429					0	0	0.013537	0	0
DENND4B	9909	broad.mit.edu	37	1	153907309	153907309	+	Silent	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:153907309C>T	uc001fdd.1	-	18	3101	c.2700G>A	c.(2698-2700)CAG>CAA	p.Q900Q	uc001fdc.1_RNA	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	900	Gln-rich.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			gctgctgttgctgctgctgct	0.468													4	81					0	0	0.014758	0	0
LAMC2	3918	broad.mit.edu	37	1	183201918	183201918	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:183201918G>C	uc001gqa.2	+	14	2460	c.2146G>C	c.(2146-2148)GTT>CTT	p.V716L	LAMC2_uc001gpz.3_Missense_Mutation_p.V716L|LAMC2_uc010poa.1_Missense_Mutation_p.V416L	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	716	Potential.|Domain II and I.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						CCAGAACCGAGTTCGGGATAC	0.522													52	100					0	0	0.014410	0	0
NAV1	89796	broad.mit.edu	37	1	201618190	201618190	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:201618190G>C	uc001gwu.2	+	1	741	c.394G>C	c.(394-396)GCT>CCT	p.A132P		NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	132					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						GGGCCGTGAAGCTCCGCTGAT	0.647													9	18					0	0	0.004482	0	0
C1orf101	257044	broad.mit.edu	37	1	244773582	244773582	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:244773582T>C	uc001iam.2	+	19	2503	c.2444T>C	c.(2443-2445)ATT>ACT	p.I815T	C1orf101_uc001iak.1_Missense_Mutation_p.I369T|C1orf101_uc001ial.2_Missense_Mutation_p.I815T|C1orf101_uc010pym.1_Missense_Mutation_p.I664T|C1orf101_uc010pyn.1_Missense_Mutation_p.I748T	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	815	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			AAGTCAATGATTGAACTTAAC	0.378													35	47					0	0	0.014410	0	0
NLRP3	114548	broad.mit.edu	37	1	247608070	247608070	+	Silent	SNP	C	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:247608070C>G	uc001icr.2	+	10	3096	c.2958C>G	c.(2956-2958)GTC>GTG	p.V986V	NLRP3_uc001ics.2_Silent_p.V929V|NLRP3_uc001icu.2_Silent_p.V986V|NLRP3_uc001icw.2_Silent_p.V929V|NLRP3_uc001icv.2_Silent_p.V872V|NLRP3_uc010pyw.1_Silent_p.V964V	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	986	LRR 9.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ACCTGGGGGTCATGATGTTCT	0.577													4	52					0	0	0.014758	0	0
TRIM58	25893	broad.mit.edu	37	1	248028031	248028031	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:248028031C>T	uc001ido.2	+	3	589	c.541C>T	c.(541-543)CGC>TGC	p.R181C		NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	181						intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GCAGAGGCAGCGCTTCAGATT	0.592													15	33					0	0	0.006122	0	0
ADARB2	105	broad.mit.edu	37	10	1405926	1405926	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr10:1405926G>A	uc009xhq.2	-	3	748	c.374C>T	c.(373-375)GCG>GTG	p.A125V		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	125	DRBM 1.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		GTTCTTGGGCGCCACCGACCA	0.617													32	28					0	0	0.013114	0	0
Unknown	0	broad.mit.edu	37	10	49218498	49218498	+	Silent	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr10:49218498A>G	uc001jgd.2	-	8	1800	c.1641T>C	c.(1639-1641)TCT>TCC	p.S547S	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		GCTGGCCCAGAGACAGCTCAG	0.582													3	91					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	11	55065705	55065705	+	RNA	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr11:55065705G>A	uc001nhl.1	-	1		c.4C>T								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		GATGGGACAGGTGAGTTCCCT	0.483													5	76					0	0	0.021553	0	0
OR4C11	219429	broad.mit.edu	37	11	55371099	55371099	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr11:55371099G>T	uc010rii.1	-	1	751	c.751C>A	c.(751-753)CCA>ACA	p.P251T		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AATATACATGGGCCAAAGAAT	0.438													12	70					1.49906e-05	1.60094e-05	0.020292	1	0
ACTN3	89	broad.mit.edu	37	11	66328794	66328794	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr11:66328794G>C	uc001oio.1	+	17	1975	c.1957G>C	c.(1957-1959)GCC>CCC	p.A653P	ACTN3_uc010rpi.1_RNA	NM_001104	NP_001095	Q08043	ACTN3_HUMAN	actinin, alpha 3	653	Spectrin 4.				focal adhesion assembly|muscle filament sliding|regulation of apoptosis	actin filament|cytosol|focal adhesion|pseudopodium	actin binding|calcium ion binding|integrin binding|protein homodimerization activity|structural constituent of muscle				0						TGCGGCCCAGGCCAATGCCAT	0.652													9	17					0	0	0.010729	0	0
LPCAT3	10162	broad.mit.edu	37	12	7092611	7092611	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr12:7092611T>C	uc001qsi.2	-	2	355	c.241A>G	c.(241-243)ATT>GTT	p.I81V	EMG1_uc010sfv.1_Intron|LPCAT3_uc010sfw.1_Intron|LPCAT3_uc009zfp.2_RNA|LPCAT3_uc010sfx.1_RNA|LPCAT3_uc009zfq.1_Intron	NM_005768	NP_005759	Q6P1A2	MBOA5_HUMAN	lysophosphatidylcholine acyltransferase 3	81					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity			ovary(1)	1						AAATAAGCAATTGAGAGGCCT	0.418													104	145					0	0	0.014410	0	0
ANAPC7	51434	broad.mit.edu	37	12	110824234	110824234	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr12:110824234G>C	uc001tqo.2	-	6	818	c.817C>G	c.(817-819)CTA>GTA	p.L273V	ANAPC7_uc001tqp.3_Missense_Mutation_p.L273V	NM_016238	NP_057322	Q9UJX3	APC7_HUMAN	anaphase-promoting complex subunit 7 isoform a	273	TPR 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding				0						CTTCCCAATAGGTCCACGTTA	0.353													112	163					0	0	0.014410	0	0
AKAP6	9472	broad.mit.edu	37	14	33292355	33292355	+	Missense_Mutation	SNP	T	G	G	rs74712664		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr14:33292355T>G	uc001wrq.2	+	13	5506	c.5336T>G	c.(5335-5337)ATT>AGT	p.I1779S		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1779					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GACTCCAGTATTGCAACAGAT	0.433													31	52					0	0	0.012213	0	0
AHNAK2	113146	broad.mit.edu	37	14	105421945	105421945	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr14:105421945G>A	uc010axc.1	-	5	461	c.341C>T	c.(340-342)ACG>ATG	p.T114M	AHNAK2_uc001ypx.2_Missense_Mutation_p.T14M	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	114	PDZ.					nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGTCTTCAGCGTCACCTCTGT	0.602													4	99					0	0	0.014758	0	0
FBN1	2200	broad.mit.edu	37	15	48786433	48786433	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr15:48786433C>T	uc001zwx.1	-	23	3024	c.2696G>A	c.(2695-2697)GGG>GAG	p.G899E		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	899	TB 4.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TCTTGAGTACCCTTTACCACA	0.323													20	62					0	0	0.018920	0	0
KIAA1609	57707	broad.mit.edu	37	16	84516258	84516258	+	Silent	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr16:84516258C>T	uc002fib.2	-	6	1124	c.1017G>A	c.(1015-1017)ACG>ACA	p.T339T	KIAA1609_uc010vod.1_Silent_p.T312T|KIAA1609_uc002fic.2_RNA	NM_020947	NP_065998	Q6P9B6	K1609_HUMAN	hypothetical protein LOC57707	339	TLD.						protein binding			ovary(2)	2						CGTTGTAGCCCGTGTGTGTGT	0.552													26	49					0	0	0.027356	0	0
PAFAH1B1	5048	broad.mit.edu	37	17	2576020	2576020	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr17:2576020A>G	uc002fuw.3	+	7	1208	c.640A>G	c.(640-642)AAA>GAA	p.K214E	PAFAH1B1_uc010ckb.1_RNA|PAFAH1B1_uc010vqz.1_Missense_Mutation_p.K43E	NM_000430	NP_000421	P43034	LIS1_HUMAN	platelet-activating factor acetylhydrolase,	214	WD 3.|Interaction with dynein and dynactin.				acrosome assembly|actin cytoskeleton organization|adult locomotory behavior|brain morphogenesis|corpus callosum morphogenesis|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|hippocampus development|layer formation in cerebral cortex|learning or memory|lipid catabolic process|microtubule organizing center organization|mitotic prometaphase|neuroblast proliferation|neuromuscular process controlling balance|neuron migration|platelet activating factor metabolic process|regulation of Rho GTPase activity|retrograde axon cargo transport|synaptic transmission|vesicle transport along microtubule	astral microtubule|cell cortex|centrosome|cytosol|kinetochore|motile primary cilium|nuclear membrane|perinuclear region of cytoplasm	dynactin binding|heparin binding|microtubule binding|phospholipase binding|phosphoprotein binding|protein homodimerization activity			skin(1)	1						CTCAAGGGATAAAACTATAAA	0.308													22	40					0	0	0.021523	0	0
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	T	T	rs11540652		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr17:7577538C>T	uc002gim.2	-	7	937	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	TP53_uc002gig.1_Missense_Mutation_p.R248Q|TP53_uc002gih.2_Missense_Mutation_p.R248Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116Q|TP53_uc010cng.1_Missense_Mutation_p.R116Q|TP53_uc002gii.1_Missense_Mutation_p.R116Q|TP53_uc010cnh.1_Missense_Mutation_p.R248Q|TP53_uc010cni.1_Missense_Mutation_p.R248Q|TP53_uc002gij.2_Missense_Mutation_p.R248Q|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155Q|TP53_uc002gio.2_Missense_Mutation_p.R116Q	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	248	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		R -> W (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|NR -> KW (in sporadic cancers; somatic mutation).|R -> C (in a sporadic cancer; somatic mutation).|NR -> IP (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R248Q(523)|p.R248W(443)|p.R248L(63)|p.R248P(12)|p.R248G(11)|p.R248R(10)|p.0?(7)|p.R155Q(4)|p.N247_R248delNR(2)|p.N247_R248>KW(2)|p.M246_P250delMNRRP(2)|p.R248fs*97(2)|p.R248_P250delRRP(1)|p.N247_R249delNRR(1)|p.N247_P250delNRRP(1)|p.R249fs*96(1)|p.R248C(1)|p.G245fs*14(1)|p.N247_R248>IP(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GATGGGCCTCCGGTTCATGCC	0.572	R248Q(KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HS683_CENTRAL_NERVOUS_SYSTEM)|R248Q(NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HCC1143_BREAST)|R248Q(BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SKUT1_SOFT_TISSUE)|R248Q(HSC4_UPPER_AERODIGESTIVE_TRACT)|R248Q(HEC1A_ENDOMETRIUM)|R248Q(SF295_CENTRAL_NERVOUS_SYSTEM)|R248Q(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIN87_STOMACH)|R248Q(P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(RT112_URINARY_TRACT)|R248Q(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PANC0203_PANCREAS)|R248Q(EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NIHOVCAR3_OVARY)|R248Q(CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SW1463_LARGE_INTESTINE)|R248Q(HCC70_BREAST)|R248Q(KYSE150_OESOPHAGUS)|R248Q(NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIH211_LUNG)|R248Q(KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PC14_LUNG)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			44	62					0	0	0.014410	0	0
DNAJC7	7266	broad.mit.edu	37	17	40133943	40133943	+	Silent	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr17:40133943G>A	uc002hyo.2	-	12	1551	c.1314C>T	c.(1312-1314)CTC>CTT	p.L438L	DNAJC7_uc010cxu.2_Silent_p.L385L|DNAJC7_uc010cxv.2_Intron|DNAJC7_uc010wgb.1_Silent_p.L382L|DNAJC7_uc010wgc.1_Silent_p.L296L|DNAJC7_uc002hyp.2_Silent_p.L382L	NM_003315	NP_003306	Q99615	DNJC7_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 7	438	J.				chaperone cofactor-dependent protein refolding	cytoplasm|cytoskeleton|nucleus	heat shock protein binding|unfolded protein binding			ovary(1)	1		all_cancers(22;0.00273)|Breast(137;0.00104)|all_epithelial(22;0.0305)				TGGGATCAGAGAGGATAGTAA	0.502													31	94					0	0	0.009535	0	0
TEX14	56155	broad.mit.edu	37	17	56700218	56700218	+	Missense_Mutation	SNP	C	T	T	rs140312980		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr17:56700218C>T	uc010dcz.1	-	4	525	c.407G>A	c.(406-408)CGT>CAT	p.R136H	TEX14_uc002iwr.1_Missense_Mutation_p.R136H|TEX14_uc002iws.1_Missense_Mutation_p.R136H|TEX14_uc010dda.1_5'UTR	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	136						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTGGGTGCTACGCTCCTTTCC	0.567													6	132					0	0	0.003080	0	0
CETN1	1068	broad.mit.edu	37	18	580857	580857	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr18:580857A>C	uc002kko.1	+	1	491	c.449A>C	c.(448-450)GAT>GCT	p.D150A		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	150	2 (Probable).|EF-hand 4.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						GACGAAGCTGATCGGGATGGG	0.542													17	81					0	0	0.008871	0	0
KIAA1328	57536	broad.mit.edu	37	18	34414311	34414311	+	Silent	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr18:34414311C>T	uc002kzz.2	+	2	109	c.87C>T	c.(85-87)TAC>TAT	p.Y29Y		NM_020776	NP_065827	Q86T90	K1328_HUMAN	hypothetical protein LOC57536	29										central_nervous_system(1)	1				COAD - Colon adenocarcinoma(74;0.195)		CAGTAGTATACGTTCCAGGTA	0.338													9	8					0	0	0.020292	0	0
MEX3C	51320	broad.mit.edu	37	18	48703275	48703275	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr18:48703275C>G	uc002lfc.3	-	2	1426	c.1426G>C	c.(1426-1428)GGA>CGA	p.G476R		NM_016626	NP_057710	Q5U5Q3	MEX3C_HUMAN	ring finger and KH domain containing 2	476						cytoplasm|nucleus	RNA binding|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		Colorectal(6;0.003)|all_epithelial(6;0.0473)		Colorectal(16;0.0175)|READ - Rectum adenocarcinoma(32;0.15)		CAGAAGTTTCCTGTGCTAAAT	0.443													38	93					0	0	0.009718	0	0
DAPK3	1613	broad.mit.edu	37	19	3964267	3964267	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:3964267G>C	uc002lzc.1	-	3	621	c.528C>G	c.(526-528)AAC>AAG	p.N176K	DAPK3_uc002lzb.1_5'Flank|DAPK3_uc002lzd.1_Missense_Mutation_p.N176K|MIR637_hsa-mir-637|MI0003652_5'Flank	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	176	Protein kinase.				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCCGAAGATGTTCTTGAACT	0.627													15	47					0	0	0.004990	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841995	8841995	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:8841995C>A	uc010xkg.1	+	1	605	c.605C>A	c.(604-606)TCA>TAA	p.S202*		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						CTGTCCACCTCAGGGGTGCTG	0.577											OREG0007662	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=OR2Z1|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	20	153					5.49717e-05	5.81431e-05	0.018920	1	0
OR1I1	126370	broad.mit.edu	37	19	15198527	15198527	+	Silent	SNP	G	A	A	rs145073104		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:15198527G>A	uc010xoe.1	+	1	651	c.651G>A	c.(649-651)TCG>TCA	p.S217S		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						TCCTTCTCTCGTACATCCGCA	0.532													3	74					0	0	0.009096	0	0
PHLDB3	653583	broad.mit.edu	37	19	43999703	43999703	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:43999703C>T	uc002own.3	-	7	1154	c.895G>A	c.(895-897)GCC>ACC	p.A299T	PHLDB3_uc010eit.2_Missense_Mutation_p.A3T	NM_198850	NP_942147	Q6NSJ2	PHLB3_HUMAN	pleckstrin homology-like domain, family B,	299	Potential.										0		Prostate(69;0.0153)				CGGCTCTCGGCTGCCATCTGC	0.642													10	12					0	0	0.010729	0	0
RELB	5971	broad.mit.edu	37	19	45540972	45540972	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:45540972G>A	uc002paj.1	+	13	1790	c.1664G>A	c.(1663-1665)AGC>AAC	p.S555N	SFRS16_uc002pak.2_5'Flank|SFRS16_uc002pal.2_5'Flank|SFRS16_uc010xxh.1_5'Flank|SFRS16_uc002pam.2_5'Flank|SFRS16_uc002pan.1_5'Flank	NM_006509	NP_006500	Q01201	RELB_HUMAN	reticuloendotheliosis viral oncogene homolog B	555						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		CTTGTGGGCAGCAACATGTTC	0.701													3	53					0	0	0.004672	0	0
GRWD1	83743	broad.mit.edu	37	19	48953672	48953672	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:48953672C>G	uc002pjd.2	+	4	804	c.571C>G	c.(571-573)CAG>GAG	p.Q191E		NM_031485	NP_113673	Q9BQ67	GRWD1_HUMAN	glutamate-rich WD repeat containing 1	191						nucleolus				ovary(1)	1		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000206)|all cancers(93;0.000207)|Epithelial(262;0.0125)|GBM - Glioblastoma multiforme(486;0.0222)		GGAGGAGCCCCAGGCCCTGGC	0.647													24	73					0	0	0.013726	0	0
MYH14	79784	broad.mit.edu	37	19	50764812	50764812	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:50764812G>T	uc002prr.1	+	19	2429	c.2382G>T	c.(2380-2382)CAG>CAT	p.Q794H	MYH14_uc010enu.1_Missense_Mutation_p.Q835H|MYH14_uc002prq.1_Missense_Mutation_p.Q802H	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	794	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		TCCTGGCCCAGCTGGAAGAGG	0.647													5	50					0.000602214	0.000630891	0.014758	1	0
NLRP13	126204	broad.mit.edu	37	19	56423195	56423195	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:56423195A>T	uc010ygg.1	-	5	2013	c.1988T>A	c.(1987-1989)CTT>CAT	p.L663H		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	663							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CAAAATATTAAGGTCAACTTC	0.403													4	78					0	0	0.014758	0	0
EPT1	85465	broad.mit.edu	37	2	26587719	26587719	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr2:26587719C>T	uc010ykz.1	+	3	293	c.146C>T	c.(145-147)GCG>GTG	p.A49V	EPT1_uc010eyl.1_RNA	NM_033505	NP_277040	Q9C0D9	EPT1_HUMAN	selenoprotein I	49	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	ethanolaminephosphotransferase activity|metal ion binding				0						ACTTGGCTGGCGCCCAATCTG	0.348													4	71					0	0	0.014758	0	0
IL1R1	3554	broad.mit.edu	37	2	102785082	102785082	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr2:102785082T>C	uc002tbq.2	+	7	998	c.680T>C	c.(679-681)GTG>GCG	p.V227A	IL1R1_uc010fix.2_Missense_Mutation_p.V227A|IL1R1_uc002tbp.2_Missense_Mutation_p.V227A|IL1R1_uc002tbr.2_Missense_Mutation_p.V227A	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	227	Ig-like C2-type 3.|Extracellular (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	ACAAGGCCTGTGATTGTGAGC	0.398													12	138					0	0	0.028581	0	0
FAM123C	205147	broad.mit.edu	37	2	131520232	131520232	+	Missense_Mutation	SNP	G	A	A	rs146781752		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr2:131520232G>A	uc002trw.2	+	2	777	c.587G>A	c.(586-588)CGG>CAG	p.R196Q	FAM123C_uc010fmv.2_Missense_Mutation_p.R196Q|FAM123C_uc010fms.1_Missense_Mutation_p.R196Q|FAM123C_uc010fmt.1_Missense_Mutation_p.R196Q|FAM123C_uc010fmu.1_Missense_Mutation_p.R196Q	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	196										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CCTGGGGGGCGGCGAAGCAAA	0.667													3	46					0	0	0.004672	0	0
CXCR4	7852	broad.mit.edu	37	2	136872470	136872470	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr2:136872470T>C	uc002tuz.2	-	2	1123	c.1028A>G	c.(1027-1029)GAG>GGG	p.E343G	CXCR4_uc002tuy.2_Missense_Mutation_p.E347G|CXCR4_uc010fnk.2_Missense_Mutation_p.E328G	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	343	Cytoplasmic.				activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	AGACTCAGACTCAGTGGAAAC	0.403													8	9					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179495026	179495026	+	Silent	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr2:179495026C>T	uc010zfg.1	-	188	36743	c.36519G>A	c.(36517-36519)ACG>ACA	p.T12173T	TTN_uc010zfh.1_Silent_p.T5868T|TTN_uc010zfi.1_Silent_p.T5801T|TTN_uc010zfj.1_Silent_p.T5676T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13100							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACCCCACCCGTCTGGTCCA	0.398													33	47					0	0	0.025465	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393			Mis		gliobastoma 								31	61					0	0	0.021022	0	0
UGT1A5	54579	broad.mit.edu	37	2	234622136	234622136	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr2:234622136A>T	uc002vuw.2	+	1	499	c.499A>T	c.(499-501)ATT>TTT	p.I167F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Missense_Mutation_p.I167F	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	167					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		GTACCTGTCGATTCCTGCTGT	0.478													8	226					0	0	0.006214	0	0
FAM182B	728882	broad.mit.edu	37	20	25848617	25848617	+	RNA	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr20:25848617A>G	uc002wvd.1	-	1		c.170T>C								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ggcaggcctgaggctgggatg	0													3	12					0	0	0.014758	0	0
ZFP64	55734	broad.mit.edu	37	20	50701276	50701276	+	Silent	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr20:50701276G>A	uc002xwk.2	-	9	2107	c.1758C>T	c.(1756-1758)GGC>GGT	p.G586G	ZFP64_uc002xwj.2_Silent_p.G367G	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CGAAGGAGGCGCCGCAGGTCT	0.597													14	36					0	0	0.024245	0	0
C21orf99	149992	broad.mit.edu	37	21	14414926	14414926	+	RNA	SNP	A	C	C	rs2821611		TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr21:14414926A>C	uc002yiy.3	+	2		c.363A>C			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAACAGGACAACTCTGATGAA	0.403													3	34					0	0	0.004672	0	0
ZBED4	9889	broad.mit.edu	37	22	50278332	50278332	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr22:50278332A>G	uc003bix.2	+	2	1492	c.1022A>G	c.(1021-1023)CAG>CGG	p.Q341R		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	341	BED-type 2.					cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		ATCGTGTTGCAGGAGAACGGG	0.652													3	100					0	0	0.009096	0	0
CNTN4	152330	broad.mit.edu	37	3	3078931	3078931	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr3:3078931G>C	uc003bpc.2	+	17	2232	c.2011G>C	c.(2011-2013)GAA>CAA	p.E671Q	CNTN4_uc003bpb.1_Missense_Mutation_p.E342Q|CNTN4_uc003bpd.1_Missense_Mutation_p.E671Q|CNTN4_uc003bpe.2_Missense_Mutation_p.E343Q|CNTN4_uc003bpf.2_Missense_Mutation_p.E342Q|CNTN4_uc003bpg.2_5'Flank	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	671	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GGTTGAATATGAATTCCGCAC	0.522													9	286					0	0	0.010729	0	0
RAD54L2	23132	broad.mit.edu	37	3	51663382	51663382	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr3:51663382T>C	uc011bdt.1	+	4	499	c.374T>C	c.(373-375)GTT>GCT	p.V125A	RAD54L2_uc003dbh.2_5'UTR|RAD54L2_uc011bdu.1_5'UTR|RAD54L2_uc003dbj.2_5'Flank	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	125						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		TTGGAGCCTGTTACCAAAGCA	0.463													5	7					0	0	0.014758	0	0
ABHD10	55347	broad.mit.edu	37	3	111705808	111705808	+	Silent	SNP	A	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr3:111705808A>C	uc003dyk.3	+	4	567	c.486A>C	c.(484-486)GCA>GCC	p.A162A	ABHD10_uc011bhq.1_Silent_p.A5A	NM_018394	NP_060864	Q9NUJ1	ABHDA_HUMAN	abhydrolase domain containing 10 precursor	162						mitochondrion	serine-type peptidase activity				0						TTCATGCTGCAATTGCACGAC	0.338													34	61					0	0	0.025465	0	0
ZDHHC23	254887	broad.mit.edu	37	3	113677375	113677375	+	Silent	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr3:113677375C>T	uc003eau.2	+	5	1505	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I	ZDHHC23_uc003eav.2_Silent_p.I396I|ZDHHC23_uc003eaw.1_Silent_p.I96I	NM_173570	NP_775841	Q8IYP9	ZDH23_HUMAN	zinc finger, DHHC domain containing 23	402						integral to membrane	acyltransferase activity|zinc ion binding			ovary(2)	2						GCGGGCTCATCGTGGACACAG	0.602													17	34					0	0	0.010504	0	0
GOLGB1	2804	broad.mit.edu	37	3	121409831	121409831	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr3:121409831C>T	uc003eei.3	-	14	8491	c.8365G>A	c.(8365-8367)GCC>ACC	p.A2789T	GOLGB1_uc010hrc.2_Missense_Mutation_p.A2794T|GOLGB1_uc003eej.3_Missense_Mutation_p.A2755T	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2789	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding	p.A2789T(1)		ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		ATTGAAAAGGCGGTTTCAGAA	0.423													26	37					0	0	0.010818	0	0
AFM	173	broad.mit.edu	37	4	74361141	74361141	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr4:74361141C>T	uc003hhb.2	+	9	1214	c.1183C>T	c.(1183-1185)CGT>TGT	p.R395C		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	395	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGGTTGTTACCGTTACGCGGT	0.388													4	67					0	0	0.009096	0	0
TIGD2	166815	broad.mit.edu	37	4	90035215	90035215	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr4:90035215G>T	uc003hsk.2	+	1	1248	c.1090G>T	c.(1090-1092)GAT>TAT	p.D364Y	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	364	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		GACAGTGTTGGATGCAATTTA	0.284													27	43					4.65686e-17	5.12255e-17	0.017118	1	0
NHEDC2	133308	broad.mit.edu	37	4	103970144	103970144	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr4:103970144G>C	uc003hwx.3	-	6	1491	c.619C>G	c.(619-621)CTG>GTG	p.L207V	NHEDC2_uc010iln.1_Missense_Mutation_p.L59V|NHEDC2_uc003hwy.2_Missense_Mutation_p.L207V|NHEDC2_uc011cew.1_Missense_Mutation_p.L150V|NHEDC2_uc011cex.1_Missense_Mutation_p.L150V|NHEDC2_uc011cey.1_Missense_Mutation_p.L150V	NM_178833	NP_849155	Q86UD5	NHDC2_HUMAN	Na+/H+ exchanger domain containing 2	207					sodium ion transport	integral to membrane|mitochondrial membrane	solute:hydrogen antiporter activity				0				OV - Ovarian serous cystadenocarcinoma(123;2.3e-08)		CCCATGGACAGTCTTACACAA	0.453													16	26					0	0	0.006122	0	0
SEC24B	10427	broad.mit.edu	37	4	110445986	110445986	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr4:110445986C>G	uc003hzk.2	+	15	2576	c.2521C>G	c.(2521-2523)CTT>GTT	p.L841V	SEC24B_uc003hzl.2_Missense_Mutation_p.L806V|SEC24B_uc011cfp.1_Missense_Mutation_p.L871V|SEC24B_uc011cfq.1_Missense_Mutation_p.L840V|SEC24B_uc011cfr.1_Missense_Mutation_p.L805V	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	841					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		GGTACAACATCTTGGCCCTGC	0.363													5	97					0	0	0.021553	0	0
FHDC1	85462	broad.mit.edu	37	4	153896041	153896041	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr4:153896041C>T	uc003inf.2	+	11	1673	c.1598C>T	c.(1597-1599)CCC>CTC	p.P533L		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	533					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					TCCTACCGGCCCCCGAACACC	0.667													9	16					0	0	0.004482	0	0
FTMT	94033	broad.mit.edu	37	5	121187709	121187709	+	Silent	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr5:121187709G>A	uc003kss.2	+	1	60	c.51G>A	c.(49-51)GCG>GCA	p.A17A		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	17					cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CTTCGCTGGCGTCTCTGCGCC	0.726													3	45					0	0	0.004672	0	0
RNF14	9604	broad.mit.edu	37	5	141353304	141353304	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr5:141353304A>G	uc003lly.2	+	2	190	c.151A>G	c.(151-153)AGC>GGC	p.S51G	RNF14_uc003llz.2_Missense_Mutation_p.S51G|RNF14_uc003lma.2_Missense_Mutation_p.S51G|RNF14_uc003lmb.2_5'UTR|RNF14_uc003lmc.2_Missense_Mutation_p.S51G|RNF14_uc011dbg.1_Missense_Mutation_p.S51G|RNF14_uc011dbh.1_Missense_Mutation_p.S51G|RNF14_uc003lmd.2_Missense_Mutation_p.S51G	NM_183399	NP_899646	Q9UBS8	RNF14_HUMAN	ring finger protein 14 isoform 1	51	RWD.				androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|protein ubiquitination|regulation of androgen receptor signaling pathway|regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|small conjugating protein ligase activity|transcription coactivator activity|zinc ion binding				0		all_hematologic(541;0.0536)|Ovarian(839;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		GATATTTGTGAGCGGTTAGTT	0.308													4	66					0	0	0.014758	0	0
ABCF1	23	broad.mit.edu	37	6	30558337	30558337	+	Silent	SNP	C	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr6:30558337C>G	uc003nql.2	+	25	2492	c.2397C>G	c.(2395-2397)GCC>GCG	p.A799A	ABCF1_uc003nqm.2_Silent_p.A761A|ABCF1_uc010jsb.2_Silent_p.A192A	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	799	ABC transporter 2.				inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						GCCATGATGCCCGACTCATCA	0.488													14	492					0	0	0.006122	0	0
FAM83B	222584	broad.mit.edu	37	6	54806708	54806708	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr6:54806708A>G	uc003pck.2	+	5	3055	c.2939A>G	c.(2938-2940)AAT>AGT	p.N980S		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	980										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CCATTGCTTAATTACAACACT	0.368													6	70					0	0	0.003080	0	0
ANKRD6	22881	broad.mit.edu	37	6	90312803	90312803	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr6:90312803C>T	uc003pni.3	+	4	616	c.275C>T	c.(274-276)GCG>GTG	p.A92V	ANKRD6_uc003pne.3_Missense_Mutation_p.A92V|ANKRD6_uc003pnf.3_Missense_Mutation_p.A92V|ANKRD6_uc011dzy.1_Missense_Mutation_p.A92V|ANKRD6_uc010kcd.2_Missense_Mutation_p.A92V|LYRM2_uc010kce.1_Intron|LYRM2_uc003png.2_RNA|ANKRD6_uc003pnh.3_5'UTR	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	92	ANK 3.						protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		GAGATCATCGCGGCGCTCATC	0.612													9	14					0	0	0.006214	0	0
AIM1	202	broad.mit.edu	37	6	107009224	107009224	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr6:107009224T>C	uc003prh.2	+	18	5250	c.4763T>C	c.(4762-4764)ATT>ACT	p.I1588T	AIM1_uc003pri.2_Missense_Mutation_p.I392T	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1588	Ricin B-type lectin.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		TAGAAGCGAATTTATTTCAGA	0.418													5	73					0	0	0.001984	0	0
TRDN	10345	broad.mit.edu	37	6	123687319	123687319	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr6:123687319G>A	uc003pzj.1	-	20	1304	c.1282C>T	c.(1282-1284)CGA>TGA	p.R428*	TRDN_uc003pzk.1_Nonsense_Mutation_p.R429*|TRDN_uc003pzl.1_Nonsense_Mutation_p.R429*|TRDN_uc010kem.1_Translation_Start_Site	NM_006073	NP_006064	Q13061	TRDN_HUMAN	triadin	428	Lumenal.				muscle contraction	integral to membrane|plasma membrane|sarcoplasmic reticulum membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.184)		TCTTTGGCTCGTTCAGTTTCT	0.303													5	22					0	0	0.003080	0	0
MYB	4602	broad.mit.edu	37	6	135522782	135522782	+	Silent	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr6:135522782A>G	uc003qfc.2	+	13	1792	c.1593A>G	c.(1591-1593)GAA>GAG	p.E531E	MYB_uc003qfh.2_Silent_p.E652E|MYB_uc003qfi.2_Silent_p.E636E|MYB_uc010kgi.2_Intron|MYB_uc003qfq.2_Silent_p.E649E|MYB_uc010kgj.2_Silent_p.E496E|MYB_uc003qfo.2_Silent_p.E446E|MYB_uc003qfu.2_Silent_p.E528E|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_RNA|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_Silent_p.E157E|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_Silent_p.E343E|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Silent_p.E531E	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	531					blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		TTTAGGTGGAATCTCCAACTG	0.438			T	NFIB	adenoid cystic carcinoma								3	38					0	0	0.004672	0	0
HGF	3082	broad.mit.edu	37	7	81350155	81350155	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr7:81350155G>A	uc003uhl.2	-	10	1342	c.1177C>T	c.(1177-1179)CGT>TGT	p.R393C	HGF_uc003uhm.2_Missense_Mutation_p.R388C	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	393	Kringle 4.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						CCATTCCCACGATAACAATCT	0.333													3	58					0	0	0.004672	0	0
ASB4	51666	broad.mit.edu	37	7	95165776	95165776	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr7:95165776A>G	uc011kij.1	+	4	1006	c.1006A>G	c.(1006-1008)AAA>GAA	p.K336E		NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	336					intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			TTCTTGTCCTAAAGCAATTGA	0.423													24	61					0	0	0.006320	0	0
STAG3	10734	broad.mit.edu	37	7	99811425	99811425	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr7:99811425T>C	uc003utx.1	+	33	3820	c.3665T>C	c.(3664-3666)ATT>ACT	p.I1222T	STAG3_uc011kjk.1_Missense_Mutation_p.I1164T|GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|STAG3_uc003uub.1_Missense_Mutation_p.I447T|GATS_uc011kjl.1_Intron|GATS_uc010lgu.2_Intron	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	1222					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAGCTGGATATTGAGGTGAGT	0.517													44	149					0	0	0.014410	0	0
ZAN	7455	broad.mit.edu	37	7	100349878	100349878	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr7:100349878C>T	uc003uwj.2	+	14	2315	c.2150C>T	c.(2149-2151)CCC>CTC	p.P717L	ZAN_uc003uwk.2_Missense_Mutation_p.P717L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	717	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCAGAAAAACCCACCATCCCC	0.507													4	128					0	0	0.009096	0	0
RINT1	60561	broad.mit.edu	37	7	105183067	105183067	+	Silent	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr7:105183067T>C	uc003vda.1	+	4	717	c.486T>C	c.(484-486)CTT>CTC	p.L162L	RINT1_uc010ljj.1_Intron	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	162					cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						TTGCTTACCTTAAATGGATTT	0.413													3	123					0	0	0.004672	0	0
CHD7	55636	broad.mit.edu	37	8	61654055	61654055	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr8:61654055G>C	uc003xue.2	+	2	541	c.64G>C	c.(64-66)GAA>CAA	p.E22Q		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	22					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TGAAGGTCTTGAAGGCCTCGG	0.478													11	11					0	0	0.020292	0	0
CCNE2	9134	broad.mit.edu	37	8	95906307	95906307	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr8:95906307T>C	uc003yhc.2	-	3	164	c.55A>G	c.(55-57)ACG>GCG	p.T19A	C8orf38_uc003yhe.1_5'Flank|C8orf38_uc003yhf.2_5'Flank|CCNE2_uc003yhd.2_Missense_Mutation_p.T19A	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	19					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					GGGGATTCCGTCTGGCTGGGC	0.453													9	173					0	0	0.010729	0	0
WDR67	93594	broad.mit.edu	37	8	124117596	124117596	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr8:124117596G>T	uc003ypp.1	+	8	1191	c.1101G>T	c.(1099-1101)AAG>AAT	p.K367N	WDR67_uc011lig.1_Missense_Mutation_p.K367N|WDR67_uc011lih.1_Missense_Mutation_p.K257N|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Missense_Mutation_p.K80N	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	367						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			GTGATCTTAAGATGAAAGTAA	0.343													10	28					4.68919e-08	5.05697e-08	0.008291	1	0
ATAD2	29028	broad.mit.edu	37	8	124359562	124359562	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr8:124359562G>C	uc003yqh.3	-	16	2090	c.1982C>G	c.(1981-1983)ACT>AGT	p.T661S	ATAD2_uc011lii.1_Missense_Mutation_p.T452S|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.T661S	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	661					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TTTCTCACTAGTGGTATAGAT	0.423													29	95					0	0	0.008361	0	0
KLHL38	340359	broad.mit.edu	37	8	124664240	124664240	+	Silent	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr8:124664240G>A	uc003yqs.1	-	1	951	c.927C>T	c.(925-927)ACC>ACT	p.T309T		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	309	Kelch 1.										0						GCCATTGGCCGGTCTGTTTGC	0.572													4	107					0	0	0.014758	0	0
KANK1	23189	broad.mit.edu	37	9	732477	732477	+	Silent	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr9:732477G>A	uc003zgl.1	+	10	3754	c.3105G>A	c.(3103-3105)GAG>GAA	p.E1035E	KANK1_uc003zgm.2_3'UTR|KANK1_uc003zgn.1_Silent_p.E1035E|KANK1_uc003zgs.1_Silent_p.E877E|KANK1_uc010mgx.1_5'UTR|KANK1_uc010mgy.1_5'UTR|KANK1_uc003zgt.1_5'Flank	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	1035					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		TTGAAGAAGAGGAGGAGGAGG	0.468													4	100					0	0	0.021553	0	0
KIAA1432	57589	broad.mit.edu	37	9	5769212	5769212	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr9:5769212C>A	uc003zji.2	+	21	3236	c.3143C>A	c.(3142-3144)GCC>GAC	p.A1048D	KIAA1432_uc003zjh.2_Missense_Mutation_p.A1048D|KIAA1432_uc003zjl.3_Missense_Mutation_p.A1011D|KIAA1432_uc003zjj.1_Intron|ERMP1_uc011lme.1_Intron	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	1127						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		ATCATCCCAGCCTCTTCTATC	0.438													29	184					4.74835e-14	5.17147e-14	0.010818	1	0
KIAA1797	54914	broad.mit.edu	37	9	20866927	20866927	+	Splice_Site	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr9:20866927G>A	uc003zog.1	+	20	2470	c.2107_splice	c.e20-1	p.D703_splice	KIAA1797_uc003zoh.1_Splice_Site_p.D139_splice	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914							integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		ACCCTATCTAGGACCCAATTG	0.338													13	54					0	0	0.028581	0	0
RXRA	6256	broad.mit.edu	37	9	137293638	137293638	+	Silent	SNP	G	A	A			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr9:137293638G>A	uc004cfb.2	+	2	351	c.189G>A	c.(187-189)CCG>CCA	p.P63P	RXRA_uc004cfa.1_Missense_Mutation_p.A114T	NM_002957	NP_002948	P19793	RXRA_HUMAN	retinoid X receptor, alpha	63	Modulating (By similarity).				cellular lipid metabolic process|cholesterol metabolic process|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid|vitamin metabolic process	nuclear chromatin|nucleoplasm	enzyme binding|ligand-regulated transcription factor activity|protein heterodimerization activity|retinoic acid-responsive element binding|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|transcription coactivator activity|vitamin D receptor binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(145;4.66e-08)|Epithelial(140;6.72e-08)|all cancers(34;2.22e-07)	Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)	GCATGGGCCCGCCTTTCTCGG	0.687													77	113					0	0	0.014410	0	0
CSF2RA	1438	broad.mit.edu	37	X	1404769	1404769	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chrX:1404769A>G	uc010nct.2	+	5	497	c.175A>G	c.(175-177)AAG>GAG	p.K59E	CSF2RA_uc011mhb.1_Missense_Mutation_p.K59E|CSF2RA_uc004cpq.2_Missense_Mutation_p.K59E|CSF2RA_uc004cpn.2_Missense_Mutation_p.K59E|CSF2RA_uc004cpo.2_Missense_Mutation_p.K59E|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Intron|CSF2RA_uc004cpp.2_Missense_Mutation_p.K59E|CSF2RA_uc010ncv.2_Missense_Mutation_p.K59E|CSF2RA_uc004cpr.2_Missense_Mutation_p.K59E	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	59	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AACCTTCAGCAAGTGTTTCTT	0.473													61	170					0	0	0.014410	0	0
EIF1AX	1964	broad.mit.edu	37	X	20156719	20156719	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chrX:20156719C>T	uc004czt.2	-	2	246	c.38G>A	c.(37-39)CGC>CAC	p.R13H	SCARNA9L_uc010nfp.2_5'Flank	NM_001412	NP_001403	P47813	IF1AX_HUMAN	X-linked eukaryotic translation initiation	13						cytosol	translation initiation factor activity			ovary(1)	1						CTTACCCCTGCGTCTGTTTTT	0.303													3	65					0	0	0.004672	0	0
CXorf58	254158	broad.mit.edu	37	X	23956785	23956785	+	Silent	SNP	T	C	C			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chrX:23956785T>C	uc004daz.1	+	8	1251	c.907T>C	c.(907-909)TTG>CTG	p.L303L	CXorf58_uc011mju.1_Silent_p.L303L	NM_152761	NP_689974	Q96LI9	CX058_HUMAN	hypothetical protein LOC254158	303											0						AAAAGTTTATTTGGCTAAAGA	0.338													56	16					0	0	0.014410	0	0
AHDC1	27245	broad.mit.edu	37	1	27875353	27875355	+	In_Frame_Del	DEL	AGG	-	-			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr1:27875353_27875355delAGG	uc009vsy.2	-	6	4241_4243	c.3272_3274delCCT	c.(3271-3276)TCCTTC>TTC	p.S1091del	AHDC1_uc009vsz.1_In_Frame_Del_p.S1091del	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	1091							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GAGGGCTGGAaggaggaggagga	0.596													7	49	---	---	---	---					
ZNF492	57615	broad.mit.edu	37	19	22847842	22847842	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr19:22847842delT	uc002nqw.3	+	4	1615	c.1371delT	c.(1369-1371)GCTfs	p.A457fs		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	457	C2H2-type 12; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				GTGGCAAAGCTTTTAACCAGT	0.388													106	25	---	---	---	---					
CNTN4	152330	broad.mit.edu	37	3	3078909	3078909	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr3:3078909delT	uc003bpc.2	+	17	2210	c.1989delT	c.(1987-1989)GGTfs	p.G663fs	CNTN4_uc003bpb.1_Frame_Shift_Del_p.G334fs|CNTN4_uc003bpd.1_Frame_Shift_Del_p.G663fs|CNTN4_uc003bpe.2_Frame_Shift_Del_p.G335fs|CNTN4_uc003bpf.2_Frame_Shift_Del_p.G334fs|CNTN4_uc003bpg.2_5'Flank	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	663	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		CCGTGGTGGGTTTGAACCCTT	0.502													12	319	---	---	---	---					
NIPBL	25836	broad.mit.edu	37	5	36986119	36986120	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr5:36986119_36986120insG	uc003jkl.3	+	10	3336_3337	c.2837_2838insG	c.(2836-2838)TTGfs	p.L946fs	NIPBL_uc003jkk.3_Frame_Shift_Ins_p.L946fs|NIPBL_uc003jkm.1_Frame_Shift_Ins_p.L825fs	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	946					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AGTTATTTGTTGGGGGGCAGGT	0.391													60	119	---	---	---	---					
ZNF462	58499	broad.mit.edu	37	9	109690957	109690957	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chr9:109690957delT	uc004bcz.2	+	3	5053	c.4764delT	c.(4762-4764)ACTfs	p.T1588fs	ZNF462_uc010mto.2_Frame_Shift_Del_p.T1436fs|ZNF462_uc004bda.2_Frame_Shift_Del_p.T1436fs	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1588	C2H2-type 14.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						CACACGGCACTTTGGAGAAAC	0.532													46	69	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76814303	76814306	+	Frame_Shift_Del	DEL	ATAA	-	-			TCGA-DU-7306-01A-11D-2086-08	TCGA-DU-7306-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f3374f4-6c85-43bf-afc0-c47bac9c4a06	539633c8-53a7-4ac0-9d0d-3e8cbd4db433	g.chrX:76814303_76814306delATAA	uc004ecp.3	-	29	6570_6573	c.6338_6341delTTAT	c.(6337-6342)TTTATCfs	p.F2113fs	ATRX_uc004ecq.3_Frame_Shift_Del_p.F2075fs|ATRX_uc004eco.3_Frame_Shift_Del_p.F1898fs	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2113_2114	Helicase C-terminal.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding	p.F2113fs*9(1)		haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	AGTAGAAATGATAAATAATCGTCC	0.289			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						32	9	---	---	---	---					
