Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AADACL4	343066	broad.mit.edu	37	1	12726320	12726320	+	Silent	SNP	C	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:12726320C>A	uc001auf.2	+	4	798	c.798C>A	c.(796-798)GCC>GCA	p.A266A		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	266	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		GGCGTGACGCCATCTTGAACG	0.502000													4	150					0.00909568	0.00909568	1	1	0
PRAMEF12	390999	broad.mit.edu	37	1	12837725	12837725	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:12837725C>T	uc001aui.2	+	3	1462	c.1435C>T	c.(1435-1437)CAG>TAG	p.Q479*		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	479										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGCCTGCTGTCAGGGTGGATT	0.507000													21	51					0	0	1	0	0
CLCNKB	1188	broad.mit.edu	37	1	16372121	16372121	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:16372121G>A	uc001axw.3	+	3	249	c.169G>A	c.(169-171)GGG>AGG	p.G57R	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Missense_Mutation_p.G57R	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	57	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		GATGACCCTCGGGGTGCTCAT	0.637000													17	75					0	0	1	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	G	G	rs10796418	by1000genomes	TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:16946407T>G	uc010ocf.1	-	3		c.491A>C			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCAATCTCCTCACTCAGCTG	0.672000													4	30					0	0	1	0	0
ITLN1	55600	broad.mit.edu	37	1	160849160	160849160	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:160849160C>T	uc001fxc.2	-	7	846	c.730G>A	c.(730-732)GAG>AAG	p.E244K		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	244	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCTGCTCTCTCGTTATTAAAT	0.488000													27	86					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176838145	176838145	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:176838145T>C	uc001glc.2	-	22	3694	c.3482A>G	c.(3481-3483)TAC>TGC	p.Y1161C	ASTN1_uc001glb.1_Missense_Mutation_p.Y1161C|ASTN1_uc001gld.1_Missense_Mutation_p.Y1161C	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1169					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GAAGAGATTGTAGATCTTGTC	0.368000													24	70					0	0	1	0	0
PTPRC	5788	broad.mit.edu	37	1	198703516	198703516	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:198703516G>C	uc001gur.1	+	22	2413	c.2233G>C	c.(2233-2235)GTT>CTT	p.V745L	PTPRC_uc001gus.1_Missense_Mutation_p.V697L|PTPRC_uc001gut.1_Missense_Mutation_p.V584L|PTPRC_uc010ppg.1_Missense_Mutation_p.V681L	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	745	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GAAAGCCACAGTTATTGTCAT	0.408000													91	299					0	0	1	0	0
IL20	50604	broad.mit.edu	37	1	207039239	207039239	+	Silent	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:207039239G>A	uc001her.2	+	1	86	c.42G>A	c.(40-42)GCG>GCA	p.A14A	IL20_uc010pry.1_Silent_p.A85A|IL20_uc009xby.2_Silent_p.A14A	NM_018724	NP_061194	Q9NYY1	IL20_HUMAN	interleukin 20 precursor	14					positive regulation of keratinocyte differentiation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of inflammatory response	extracellular space	cytokine activity|interleukin-20 receptor binding				0	Breast(84;0.201)			OV - Ovarian serous cystadenocarcinoma(81;0.00459)		TCTCTGCTGCGTTTTATCTCC	0.458000													17	59					0	0	1	0	0
ENAH	55740	broad.mit.edu	37	1	225706962	225706962	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:225706962C>T	uc001hpc.1	-	5	1193	c.740G>A	c.(739-741)CGA>CAA	p.R247Q	ENAH_uc001hpd.1_Missense_Mutation_p.R247Q	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	247	Potential.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		CTGCTCTTGTCGCTCCCTTTC	0.438000													107	261					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234454541	234454541	+	Silent	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:234454541C>T	uc001hwa.1	+	5	1020	c.792C>T	c.(790-792)GCC>GCT	p.A264A	SLC35F3_uc001hvy.1_Silent_p.A333A	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	264					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TTGGAGAAGCCGCCTTATTTT	0.468000													5	112					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315252	30315252	+	Silent	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr10:30315252G>A	uc001iux.2	-	2	3884	c.3825C>T	c.(3823-3825)AGC>AGT	p.S1275S	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.S1137S|KIAA1462_uc009xle.1_Silent_p.S1275S	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1275										ovary(4)	4						CATTCCTGAAGCTCAGGACTC	0.612000													15	28					0	0	1	0	0
PTEN	5728	broad.mit.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	T	T	rs121909224		TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr10:89692904C>T	uc001kfb.2	+	6	1419	c.388C>T	c.(388-390)CGA>TGA	p.R130*		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	130	Phosphatase tensin-type.		R -> L (in CD and endometrial hyperplasia; loss of phosphatase activity towards Ins(1,3,4,5)P4; retains ability to bind phospholipid membranes).|R -> Q (in CD; loss of phosphatase activity towards Ins(1,3,4,5)P4; retains ability to bind phospholipid membranes).|R -> G (loss of phosphatase activity towards Ins(1,3,4,5)P4 and PtdIns(3,4,5)P3).	R->M: Does not affect the ability to inhibit AKT/PKB activation.	activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R130G(65)|p.R130*(61)|p.R130Q(43)|p.R130fs*4(12)|p.R130L(7)|p.R130P(4)|p.R55fs*1(4)|p.K128_R130del(3)|p.?(2)|p.Y27fs*1(2)|p.Y27_N212>Y(2)|p.K128fs*47(1)|p.A121_F145del(1)|p.R130fs*2(1)|p.R130R(1)|p.F56fs*2(1)|p.G129fs*50(1)|p.G129fs*51(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		TGGAAAGGGACGAACTGGTGT	0.403000	R130G(OV56_OVARY)|R130G(KMBC2_URINARY_TRACT)	31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			52	91					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96535209	96535209	+	Missense_Mutation	SNP	C	T	T	rs149590953		TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr10:96535209C>T	uc010qnz.1	+	3	394	c.394C>T	c.(394-396)CGG>TGG	p.R132W	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Missense_Mutation_p.R110W	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	132			R -> Q (in allele CYP2C19*6; loss of activity).		exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CATGACGCTGCGGAATTTTGG	0.507000													40	57					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96818194	96818194	+	Silent	SNP	A	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr10:96818194A>G	uc001kkb.2	-	5	812	c.717T>C	c.(715-717)CTT>CTC	p.L239L	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Silent_p.L169L|CYP2C8_uc010qob.1_Silent_p.L153L|CYP2C8_uc010qoc.1_Silent_p.L137L|CYP2C8_uc010qod.1_Silent_p.L153L	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	239					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	AACTTCGTGTAAGAGCAACAT	0.363000													11	17					0	0	1	0	0
ANO9	338440	broad.mit.edu	37	11	429619	429619	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr11:429619C>T	uc001lpi.2	-	11	951	c.866G>A	c.(865-867)CGC>CAC	p.R289H	ANO9_uc001lph.2_5'UTR|ANO9_uc010qvv.1_Missense_Mutation_p.R145H	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	289	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CACGCGGGCGCGCTGCCGCTT	0.687000													14	48					0	0	1	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530632	5530632	+	Missense_Mutation	SNP	G	A	A	rs143866662		TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr11:5530632G>A	uc001may.1	-	2	243	c.157C>T	c.(157-159)CGC>TGC	p.R53C	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	53	Ubiquitin-like.									ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCTTAAAGCGCTGAGATATC	0.507000													50	135					0	0	1	0	0
OR52N2	390077	broad.mit.edu	37	11	5841699	5841699	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr11:5841699G>C	uc010qzp.1	+	1	134	c.134G>C	c.(133-135)TGT>TCT	p.C45S	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGGGGAACTGTGGGCTCATC	0.547000													20	61					0	0	1	0	0
OR52E4	390081	broad.mit.edu	37	11	5906225	5906225	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr11:5906225C>T	uc010qzs.1	+	1	703	c.703C>T	c.(703-705)CGA>TGA	p.R235*	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCAAGATGTCCGACTAAAGGC	0.398000													51	121					0	0	1	0	0
TSG101	7251	broad.mit.edu	37	11	18505466	18505466	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr11:18505466T>C	uc001mor.2	-	8	920	c.794A>G	c.(793-795)AAG>AGG	p.K265R		NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	265	Potential.				cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						CTGGTGACCCTTTTTCAGGTC	0.438000													5	284					0	0	1	0	0
LOC653113	653113	broad.mit.edu	37	12	8384317	8384317	+	RNA	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr12:8384317G>A	uc010sgk.1	-	5		c.1471C>T				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						AGCTCTGATGGGATGAGAGCT	0.537000													3	58					0	0	1	0	0
AVPR1A	552	broad.mit.edu	37	12	63543919	63543919	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr12:63543919C>T	uc001sro.1	-	1	2672	c.698G>A	c.(697-699)GGT>GAT	p.G233D		NM_000706	NP_000697	P37288	V1AR_HUMAN	arginine vasopressin receptor 1A	233	Helical; Name=5; (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|generation of precursor metabolites and energy	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity				0			BRCA - Breast invasive adenocarcinoma(9;0.193)	GBM - Glioblastoma multiforme(28;0.0569)	Conivaptan(DB00872)|Desmopressin(DB00035)|Felypressin(DB00093)|Terlipressin(DB02638)|Vasopressin(DB00067)	GTAGCAGGTACCCAAGATGAC	0.642000													37	90					0	0	1	0	0
FLVCR2	55640	broad.mit.edu	37	14	76101273	76101273	+	Silent	SNP	A	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr14:76101273A>G	uc001xrs.2	+	5	1417	c.1041A>G	c.(1039-1041)GGA>GGG	p.G347G	FLVCR2_uc010tvd.1_Silent_p.G142G	NM_017791	NP_060261	Q9UPI3	FLVC2_HUMAN	feline leukemia virus subgroup C cellular	347					transmembrane transport	integral to membrane|plasma membrane	heme binding|heme transporter activity				0				BRCA - Breast invasive adenocarcinoma(234;0.029)		TGAATGCTGGAAGAATTGGCC	0.527000													3	27					0	0	1	0	0
PTPN21	11099	broad.mit.edu	37	14	89016587	89016587	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr14:89016587G>A	uc001xwv.3	-	2	506	c.175C>T	c.(175-177)CGG>TGG	p.R59W	PTPN21_uc010twc.1_5'UTR|PTPN21_uc010atf.1_Missense_Mutation_p.R59W	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	59	FERM.					cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						CTTACCTCCCGCAGCTCCAGC	0.378000													3	81					0	0	1	0	0
CHRNB4	1143	broad.mit.edu	37	15	78921630	78921630	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr15:78921630G>T	uc002bed.1	-	5	1129	c.1017C>A	c.(1015-1017)CAC>CAA	p.H339Q	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_Missense_Mutation_p.H157Q	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	339	Cytoplasmic (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						TAGGCAGCTTGTGCAGGAAGC	0.642000													13	33					0.00010058	0.000101886	1	1	0
RASGRF1	5923	broad.mit.edu	37	15	79277481	79277481	+	Silent	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr15:79277481G>A	uc002beq.2	-	24	3705	c.3330C>T	c.(3328-3330)ATC>ATT	p.I1110I	RASGRF1_uc002bep.2_Silent_p.I1094I|RASGRF1_uc010blm.1_Silent_p.I1019I|RASGRF1_uc002ber.3_Silent_p.I1094I|RASGRF1_uc002beo.2_Silent_p.I326I	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	1112	Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CCCACTTCTCGATGGCGCTCA	0.448000													26	128					0	0	1	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	Missense_Mutation	SNP	T	C	C	rs79284655		TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr16:32890639T>C	uc002edh.1	-	5	423	c.247A>G	c.(247-249)AAG>GAG	p.K83E	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						ACCAGCGGCTTGTAGTACACA	0.453000													5	34					0	0	1	0	0
TMCO7	79613	broad.mit.edu	37	16	68894308	68894308	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr16:68894308G>T	uc002ewi.3	+	2	628	c.616G>T	c.(616-618)GCT>TCT	p.A206S	TMCO7_uc002ewh.2_Missense_Mutation_p.A206S	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	206						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		TCTGAATGTTGCTCAGCACAC	0.517000													54	200					3.57465e-26	3.87253e-26	1	1	0
C17orf97	400566	broad.mit.edu	37	17	263306	263306	+	Silent	SNP	C	T	T	rs111797689		TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr17:263306C>T	uc002frh.2	+	3	718	c.702C>T	c.(700-702)GGC>GGT	p.G234G	C17orf97_uc010vpz.1_RNA	NM_001013672	NP_001013694	Q6ZQX7	CQ097_HUMAN	hypothetical protein LOC400566	234	4.|20 X 10 AA approximative tandem repeat of A-L-K-G-F-H-P-D-P-E.									ovary(1)	1						CCCTCAAGGGCTTCCACCCCG	0.697000													3	35					0	0	1	0	0
C17orf97	400566	broad.mit.edu	37	17	263322	263322	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr17:263322G>A	uc002frh.2	+	3	734	c.718G>A	c.(718-720)GAG>AAG	p.E240K	C17orf97_uc010vpz.1_RNA	NM_001013672	NP_001013694	Q6ZQX7	CQ097_HUMAN	hypothetical protein LOC400566	240	4.|20 X 10 AA approximative tandem repeat of A-L-K-G-F-H-P-D-P-E.			E -> D (in Ref. 3; AAH57385).						ovary(1)	1						CCCCGACCCCGAGGCCCTCAA	0.716000													3	37					0	0	1	0	0
ANKFY1	51479	broad.mit.edu	37	17	4088255	4088255	+	Silent	SNP	C	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr17:4088255C>G	uc002fxq.1	-	12	1595	c.1557G>C	c.(1555-1557)CTG>CTC	p.L519L	ANKFY1_uc002fxn.2_Silent_p.L561L|ANKFY1_uc002fxo.2_Silent_p.L519L|ANKFY1_uc002fxp.2_Silent_p.L518L|ANKFY1_uc010ckp.2_Silent_p.L460L	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	519	ANK 6.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						CCTCCGTCTGCAGGTTTGGGT	0.622000													12	54					0	0	1	0	0
KCNJ2	3759	broad.mit.edu	37	17	68171457	68171457	+	Missense_Mutation	SNP	G	A	A	rs147750704		TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr17:68171457G>A	uc010dfg.2	+	2	678	c.277G>A	c.(277-279)GTC>ATC	p.V93I	KCNJ2_uc002jir.2_Missense_Mutation_p.V93I	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	93	Helical; Name=M1; (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					CCTGGCTTTCGTCCTGTCATG	0.537000													36	116					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56246388	56246388	+	Silent	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr18:56246388C>T	uc002lhj.3	-	4	1834	c.1620G>A	c.(1618-1620)CCG>CCA	p.P540P		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	540							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CCTTCATTCCCGGCTGCCTCA	0.542000											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	57	180					0	0	1	0	0
AES	166	broad.mit.edu	37	19	3061202	3061202	+	Silent	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr19:3061202G>A	uc002lwy.1	-	2	254	c.81C>T	c.(79-81)GAC>GAT	p.D27D	AES_uc002lwz.1_Silent_p.D27D|AES_uc002lxa.1_5'UTR|AES_uc002lxb.1_Silent_p.D94D|AES_uc002lxc.2_Silent_p.D94D	NM_001130	NP_001121	Q08117	AES_HUMAN	amino-terminal enhancer of split isoform b	27	Gln-rich (Q domain).				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of response to cytokine stimulus|negative regulation of transcription from RNA polymerase II promoter|organ morphogenesis|response to interleukin-1|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTTGATGCGGTCGCAGGAGT	0.627000													4	202					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8136967	8136967	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr19:8136967C>A	uc002mjf.2	-	62	8074	c.8053G>T	c.(8053-8055)GAC>TAC	p.D2685Y	FBN3_uc002mje.2_Missense_Mutation_p.D481Y	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2685						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGTGGCCGGTCCCGAGGGGAG	0.642000													29	100					4.4194e-11	4.59618e-11	1	1	0
ZNF546	339327	broad.mit.edu	37	19	40521374	40521374	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr19:40521374C>T	uc002oms.2	+	7	2453	c.2197C>T	c.(2197-2199)CGG>TGG	p.R733W	ZNF546_uc002omt.2_Missense_Mutation_p.R707W	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	733	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					CTTTAGTCGTCGGTATCATCT	0.378000													4	101					0	0	1	0	0
IGFL2	147920	broad.mit.edu	37	19	46664038	46664038	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr19:46664038C>G	uc010xxv.1	+	3	277	c.241C>G	c.(241-243)CTT>GTT	p.L81V	IGFL2_uc002peb.2_Missense_Mutation_p.L92V	NM_001135113	NP_001128585	Q6UWQ7	IGFL2_HUMAN	IGF-like family member 2 isoform b	81						extracellular region	protein binding				0		Ovarian(192;0.0908)|all_neural(266;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(486;0.031)|Epithelial(262;0.247)		GCTCTGCTGTCTTGATTCCTT	0.527000													71	242					0	0	1	0	0
HAS1	3036	broad.mit.edu	37	19	52220447	52220447	+	Splice_Site	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr19:52220447C>T	uc002pxo.1	-	3	738	c.703_splice	c.e3-1	p.V235_splice	HAS1_uc010epc.1_Splice_Site|HAS1_uc010epd.1_Splice_Site_p.V200_splice|HAS1_uc002pxn.1_Splice_Site_p.V242_splice|HAS1_uc002pxp.1_Splice_Site_p.V234_splice	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1						cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		AGTCACAGACCTGTAAGGTGG	0.622000													10	40					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54802564	54802564	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr19:54802564C>T	uc002qfd.2	-	5	942	c.877G>A	c.(877-879)GGC>AGC	p.G293S	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.G229S	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	293	Ig-like C2-type 3.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GTGTACTGGCCCCCGTAGGAG	0.682000													28	64					0	0	1	0	0
XPO1	7514	broad.mit.edu	37	2	61719740	61719740	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr2:61719740C>T	uc002sbj.2	-	14	2256	c.1528G>A	c.(1528-1530)GAA>AAA	p.E510K	XPO1_uc010fcl.2_Missense_Mutation_p.E506K|XPO1_uc010ypn.1_Missense_Mutation_p.E506K|XPO1_uc002sbk.2_Missense_Mutation_p.E71K|XPO1_uc002sbh.2_Missense_Mutation_p.E157K	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	510	Necessary for HTLV-1 Rex-mediated mRNA export.				intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			TCGTCCTCTTCATGCATTGCT	0.348000													3	57					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70904917	70904917	+	Silent	SNP	G	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr2:70904917G>C	uc002sgz.2	-	12	1941	c.1476C>G	c.(1474-1476)CCC>CCG	p.P492P	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.P492P|ADD2_uc002sha.2_Splice_Site_p.K187_splice|ADD2_uc002sgx.2_Silent_p.P492P|ADD2_uc010fdt.1_Silent_p.P492P|ADD2_uc002shc.1_Silent_p.P492P|ADD2_uc002shd.1_Splice_Site_p.K187_splice|ADD2_uc010fdu.1_Silent_p.P508P	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	492					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						GTACTTCCTGGGGGTCAGTAT	0.522000													15	55					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107049631	107049631	+	Silent	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr2:107049631C>T	uc010ywi.1	-	16	2373	c.2316G>A	c.(2314-2316)GCG>GCA	p.A772A		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	772					intracellular transport		binding			ovary(1)	1						TTTCTGAATCCGCATTTCGCA	0.373000													6	269					0	0	1	0	0
KIF5C	3800	broad.mit.edu	37	2	149864511	149864511	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr2:149864511G>A	uc010zbu.1	+	23	2848	c.2480G>A	c.(2479-2481)AGT>AAT	p.S827N	KIF5C_uc002tws.1_RNA|KIF5C_uc002twu.1_Missense_Mutation_p.S109N	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	827					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		GGAGGGGGCAGTGCTGCCCAG	0.557000													3	84					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166892601	166892601	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr2:166892601G>A	uc010zcz.1	-	16	3371	c.3353C>T	c.(3352-3354)ACG>ATG	p.T1118M	SCN1A_uc002udo.3_Missense_Mutation_p.T998M|SCN1A_uc010fpk.2_Missense_Mutation_p.T970M	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1129						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AAAGTCTTCCGTGTTTAAATT	0.318000													39	140					0	0	1	0	0
HJURP	55355	broad.mit.edu	37	2	234750028	234750028	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr2:234750028C>G	uc002vvg.2	-	8	1464	c.1398G>C	c.(1396-1398)ATG>ATC	p.M466I	HJURP_uc010znd.1_Missense_Mutation_p.M405I|HJURP_uc010zne.1_Missense_Mutation_p.M374I	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	466					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		CCCCTCTGTACATGTTCATGG	0.532000													40	71					0	0	1	0	0
TM9SF4	9777	broad.mit.edu	37	20	30723918	30723918	+	Silent	SNP	A	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr20:30723918A>G	uc002wxj.2	+	3	406	c.171A>G	c.(169-171)GAA>GAG	p.E57E	TM9SF4_uc010ztr.1_5'UTR|TM9SF4_uc010zts.1_5'UTR|TM9SF4_uc002wxk.2_Silent_p.E40E	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	57						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TACCTTATGAATACTATTCAC	0.512000													21	78					0	0	1	0	0
PLCG1	5335	broad.mit.edu	37	20	39795452	39795452	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr20:39795452C>G	uc002xjp.1	+	19	2375	c.2254C>G	c.(2254-2256)CTG>GTG	p.L752V	PLCG1_uc002xjo.1_Missense_Mutation_p.L752V|PLCG1_uc010zwe.1_Missense_Mutation_p.L378V|PLCG1_uc010ggf.2_Missense_Mutation_p.L102V	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	752	SH2 2.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				CAAGATGAAGCTGCGCTATCC	0.572000													3	129					0	0	1	0	0
ERG	2078	broad.mit.edu	37	21	39755664	39755664	+	Silent	SNP	G	A	A	rs143039786		TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr21:39755664G>A	uc010gnw.2	-	12	1417	c.1122C>T	c.(1120-1122)CGC>CGT	p.R374R	ERG_uc002yxa.2_Silent_p.R367R|ERG_uc011aek.1_Silent_p.R275R|ERG_uc010gnv.2_Silent_p.R251R|ERG_uc010gnx.2_Silent_p.R350R|ERG_uc011ael.1_Silent_p.R374R|ERG_uc002yxb.2_Silent_p.R350R	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	374	ETS.				cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				AACGGAGGGCGCGGCTGAGCT	0.592000													30	80					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14939167	14939167	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr3:14939167T>C	uc003bzc.2	+	5	3010	c.2900T>C	c.(2899-2901)CTG>CCG	p.L967P	FGD5_uc011avk.1_Missense_Mutation_p.L967P|FGD5_uc003bzd.2_Missense_Mutation_p.L45P	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	967	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GAGGAAAGGCTGTCAAATTGG	0.502000													5	14					0	0	1	0	0
POU1F1	5449	broad.mit.edu	37	3	87322565	87322565	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr3:87322565G>T	uc003dqq.1	-	2	271	c.146C>A	c.(145-147)ACA>AAA	p.T49K	POU1F1_uc010hoj.1_Missense_Mutation_p.T75K	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	49					negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		ATGAAGTCCTGTTGCTGTGTT	0.383000													12	57					4.14922e-12	4.3735e-12	1	1	0
SEC61A1	29927	broad.mit.edu	37	3	127786902	127786902	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr3:127786902G>A	uc003ekb.2	+	11	1428	c.1244G>A	c.(1243-1245)CGG>CAG	p.R415Q	RUVBL1_uc003eke.2_Intron|RUVBL1_uc003ekf.2_Intron|SEC61A1_uc003ekc.2_Missense_Mutation_p.R362Q|SEC61A1_uc003ekd.2_Missense_Mutation_p.R295Q|SEC61A1_uc003ekg.2_Missense_Mutation_p.R109Q	NM_013336	NP_037468	P61619	S61A1_HUMAN	Sec61 alpha 1 subunit	415	Cytoplasmic (Potential).				protein targeting to ER	integral to endoplasmic reticulum membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|protein binding|ribosome binding			ovary(1)	1						GAACTCAACCGGTGAGTGGTG	0.577000											OREG0015775	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	77					0	0	1	0	0
TLR1	7096	broad.mit.edu	37	4	38798156	38798156	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr4:38798156C>T	uc003gtl.2	-	4	2571	c.2297G>A	c.(2296-2298)GGC>GAC	p.G766D		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	766	Cytoplasmic (Potential).|TIR.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						CCAAAAAAGGCCACGTTTGCT	0.423000													13	30					0	0	1	0	0
TEC	7006	broad.mit.edu	37	4	48173432	48173432	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr4:48173432G>C	uc003gxz.2	-	4	369	c.278C>G	c.(277-279)GCA>GGA	p.A93G		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	93	PH.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						TGGACTAGGTGCAAAAATGTA	0.353000													18	67					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180047927	180047927	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr5:180047927C>T	uc003mma.3	-	15	2327	c.2248G>A	c.(2248-2250)GTG>ATG	p.V750M	FLT4_uc003mlz.3_Missense_Mutation_p.V750M|FLT4_uc003mmb.1_Missense_Mutation_p.V283M	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	750	Ig-like C2-type 7.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GCGTTGCACACGCTGCACAGA	0.657000									Congenital_Hereditary_Lymphedema				4	18					0	0	1	0	0
C6orf150	115004	broad.mit.edu	37	6	74135195	74135195	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr6:74135195A>C	uc003pgx.1	-	5	1463	c.1324T>G	c.(1324-1326)TTC>GTC	p.F442V		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	442											0						ACGTGAAAGAAGGCAGTTTTC	0.393000													11	28					0	0	1	0	0
DAGLB	221955	broad.mit.edu	37	7	6472559	6472559	+	Missense_Mutation	SNP	G	A	A	rs148006210	byFrequency	TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:6472559G>A	uc003sqa.2	-	5	880	c.710C>T	c.(709-711)GCG>GTG	p.A237V	DAGLB_uc011jwt.1_Missense_Mutation_p.A51V|DAGLB_uc011jwu.1_Missense_Mutation_p.R151W|DAGLB_uc003sqb.2_5'UTR|DAGLB_uc003sqc.2_Intron|DAGLB_uc011jwv.1_RNA|DAGLB_uc003sqd.3_Missense_Mutation_p.A196V|DAGLB_uc011jww.1_RNA	NM_139179	NP_631918	Q8NCG7	DGLB_HUMAN	diacylglycerol lipase, beta isoform 1	237	Cytoplasmic (Potential).				lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.102)		GGCGAGGCCCGCCGCAATGTC	0.602000													3	54					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50459521	50459521	+	Silent	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:50459521C>T	uc003tow.3	+	8	978	c.810C>T	c.(808-810)AAC>AAT	p.N270N	IKZF1_uc003tox.3_Silent_p.N228N|IKZF1_uc003toy.3_Silent_p.N228N|IKZF1_uc011kck.1_Silent_p.N183N|IKZF1_uc003toz.3_Silent_p.N240N|IKZF1_uc010kyx.2_Intron|IKZF1_uc003tpa.3_Silent_p.N22N	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	270					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				TAGCAAGTAACGTCGCCAAAC	0.393000			D		ALL								8	32					0	0	1	0	0
ZNF92	168374	broad.mit.edu	37	7	64863771	64863771	+	Silent	SNP	A	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:64863771A>G	uc003ttz.2	+	4	887	c.744A>G	c.(742-744)AAA>AAG	p.K248K	ZNF92_uc003tua.2_Silent_p.K179K|ZNF92_uc010kzu.2_Silent_p.K216K|ZNF92_uc003tub.2_Silent_p.K172K	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	248	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				CTAAACATAAAATAATTCATA	0.348000													3	58					0	0	1	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130895	75130895	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:75130895C>T	uc011kfy.1	+	6	906	c.770C>T	c.(769-771)CCG>CTG	p.P257L		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	257	Arg-rich.										0						TCCATGAACCCGAGGGCCAGG	0.592000													9	343					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82583644	82583644	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:82583644C>A	uc003uhx.2	-	5	6914	c.6625G>T	c.(6625-6627)GTT>TTT	p.V2209F	PCLO_uc003uhv.2_Missense_Mutation_p.V2209F|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2140					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTGTATAAACTGTGGTTATG	0.413000													11	49					7.03913e-09	7.22437e-09	1	1	0
GAL3ST4	79690	broad.mit.edu	37	7	99758242	99758242	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:99758242T>C	uc003utt.2	-	3	1787	c.770A>G	c.(769-771)AAT>AGT	p.N257S	C7orf43_uc011kjj.1_5'Flank|C7orf43_uc003utr.2_5'Flank|C7orf43_uc003uts.2_5'Flank|GAL3ST4_uc003utu.2_Missense_Mutation_p.N257S|GAL3ST4_uc010lgq.2_Missense_Mutation_p.N195S	NM_024637	NP_078913	Q96RP7	G3ST4_HUMAN	galactose-3-O-sulfotransferase 4	257	Lumenal (Potential).				cell-cell signaling|oligosaccharide metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane|membrane fraction	3'-phosphoadenosine 5'-phosphosulfate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(3)	3	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GATGAGGGCATTGGGATTGAG	0.557000													5	314					0	0	1	0	0
GPR22	2845	broad.mit.edu	37	7	107114948	107114948	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:107114948C>A	uc003vef.2	+	3	1789	c.443C>A	c.(442-444)GCA>GAA	p.A148E	COG5_uc003vec.2_Intron|COG5_uc003ved.2_Intron|COG5_uc003vee.2_Intron	NM_005295	NP_005286	Q99680	GPR22_HUMAN	G protein-coupled receptor 22	148	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2						GTAAAACCTGCAAACCGAATT	0.358000													32	107					5.04308e-16	5.3885e-16	1	1	0
HTR5A	3361	broad.mit.edu	37	7	154863096	154863096	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:154863096G>C	uc003wlu.1	+	1	551	c.487G>C	c.(487-489)GCG>CCG	p.A163P	uc011kvt.1_5'UTR|uc003wlt.2_5'UTR	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	163	Helical; Name=4; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CGTCATGATCGCGCTCACCTG	0.627000													19	79					0	0	1	0	0
NAT2	10	broad.mit.edu	37	8	18257611	18257611	+	Missense_Mutation	SNP	G	A	A	rs138592670		TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr8:18257611G>A	uc003wyw.1	+	2	205	c.98G>A	c.(97-99)CGG>CAG	p.R33Q		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	33					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		CACCAGATCCGGGCTGTTCCC	0.423000									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				42	139					0	0	1	0	0
GLT6D1	360203	broad.mit.edu	37	9	138530972	138530972	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr9:138530972C>T	uc010nbd.1	-	2	316	c.62G>A	c.(61-63)CGT>CAT	p.R21H		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	21	Helical; Signal-anchor for type II membrane protein; (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		CCTGAAATAACGCTCAACCAA	0.249000													6	49					0	0	1	0	0
FTSJ1	24140	broad.mit.edu	37	X	48337056	48337056	+	Silent	SNP	A	G	G			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chrX:48337056A>G	uc004djo.1	+	4	566	c.243A>G	c.(241-243)CCA>CCG	p.P81P	FTSJ1_uc004djl.2_Silent_p.P81P|FTSJ1_uc004djm.2_Silent_p.P81P|FTSJ1_uc004djn.1_Silent_p.P81P|FTSJ1_uc004djp.1_Silent_p.P81P|FTSJ1_uc011mlw.1_Intron	NM_012280	NP_036412	Q9UET6	RRMJ1_HUMAN	FtsJ homolog 1 isoform a	81					RNA methylation|rRNA processing		methyltransferase activity|nucleic acid binding				0						CTATGGCTCCACTACCAGGTG	0.617000													5	22					0	0	1	0	0
LAS1L	81887	broad.mit.edu	37	X	64752492	64752492	+	Silent	SNP	T	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chrX:64752492T>C	uc004dwa.1	-	3	453	c.381A>G	c.(379-381)TCA>TCG	p.S127S	LAS1L_uc004dwc.1_Silent_p.S127S|LAS1L_uc004dwd.1_Silent_p.S85S	NM_031206	NP_112483	Q9Y4W2	LAS1L_HUMAN	LAS1-like	127						MLL1 complex|nucleolus	protein binding			ovary(3)|large_intestine(1)	4						TCTTCCTCTCTGAGATAAGAT	0.463000													22	57					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160093068	160093069	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr1:160093068_160093069insC	uc001fvc.2	+	4	375_376	c.243_244insC	c.(241-246)CCTCCCfs	p.P81fs	ATP1A2_uc001fvb.2_Frame_Shift_Ins_p.P81fs|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	81_82	Cytoplasmic (Potential).|Interaction with phosphoinositide-3 kinase (By similarity).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TCACACCACCTCCCACAACCCC	0.629													60	238	---	---	---	---					
PAH	5053	broad.mit.edu	37	12	103249024	103249025	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr12:103249024_103249025insC	uc001tjq.1	-	7	1067_1068	c.595_596insG	c.(595-597)AAAfs	p.K199fs	PAH_uc010swc.1_Frame_Shift_Ins_p.K199fs	NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	199					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	AGCATGGGTTTTATACAAGGAC	0.446													8	65	---	---	---	---					
PTTG1IP	754	broad.mit.edu	37	21	46276194	46276196	+	In_Frame_Del	DEL	GCA	-	-			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr21:46276194_46276196delGCA	uc002zgb.1	-	4	571_573	c.361_363delTGC	c.(361-363)TGCdel	p.C121del	PTTG1IP_uc011afj.1_RNA|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330	P53801	PTTG_HUMAN	pituitary tumor-transforming gene 1	121	Poly-Cys.|Cytoplasmic (Potential).				protein import into nucleus	cytoplasm|integral to membrane|nucleus				ovary(1)	1				Colorectal(79;0.0659)		TCTTCCTCCTGCAGCAGCAGCAG	0.616													8	105	---	---	---	---					
TIMD4	91937	broad.mit.edu	37	5	156378745	156378747	+	In_Frame_Del	DEL	TTG	-	-			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr5:156378745_156378747delTTG	uc003lwh.2	-	3	512_514	c.455_457delCAA	c.(454-459)ACAAGC>AGC	p.T152del	TIMD4_uc010jii.2_In_Frame_Del_p.T152del	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	152	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGGTGGGGCTTGTTGTTGTTGT	0.537													7	457	---	---	---	---					
PMS2L11	441263	broad.mit.edu	37	7	76610356	76610356	+	RNA	DEL	C	-	-			TCGA-DU-8161-01A-11D-2253-08	TCGA-DU-8161-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	54d2b413-5a8a-43c7-b8dc-60d3ebd5afce	aea196d9-761d-4e84-b568-ad9c58926643	g.chr7:76610356delC	uc003ufw.3	+	1		c.218delC			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						CCCCCCAGCACCCCCCCCACA	0.647													7	214	---	---	---	---					
