Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FUBP1	8880	broad.mit.edu	37	1	78432577	78432577	+	Missense_Mutation	SNP	T	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr1:78432577T>C	uc001dii.2	-	6	495	c.406A>G	c.(406-408)ATA>GTA	p.I136V	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Missense_Mutation_p.I157V	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	136	KH 1.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						CCAGGAGCTATCTGTATTTTG	0.318000													18	22					0	0	0.001523	0	0
FLG	2312	broad.mit.edu	37	1	152277975	152277975	+	Silent	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr1:152277975C>T	uc001ezu.1	-	3	9423	c.9387G>A	c.(9385-9387)TCG>TCA	p.S3129S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3129	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGCTATCTACCGAATGCTCGT	0.592000									Ichthyosis				9	397					0	0	0.001368	0	0
MARK1	4139	broad.mit.edu	37	1	220791711	220791711	+	Silent	SNP	T	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr1:220791711T>C	uc001hmn.3	+	8	1209	c.612T>C	c.(610-612)AGT>AGC	p.S204S	MARK1_uc009xdw.2_Silent_p.S204S|MARK1_uc010pun.1_Silent_p.S204S|MARK1_uc001hmm.3_Silent_p.S182S	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	204	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TTGGTTTTAGTAATGAATTTA	0.383000													21	61					0	0	0.002780	0	0
PPYR1	5540	broad.mit.edu	37	10	47087234	47087234	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr10:47087234C>T	uc001jee.2	+	3	870	c.451C>T	c.(451-453)CCC>TCC	p.P151S	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.P151S	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	151	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						AGGCTGGAAGCCCAGCATCTC	0.587000													48	218					0	0	0.003610	0	0
CDH23	64072	broad.mit.edu	37	10	73453969	73453969	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr10:73453969G>A	uc001jrx.3	+	20	2619	c.2242G>A	c.(2242-2244)GCA>ACA	p.A748T	CDH23_uc001jry.2_Missense_Mutation_p.A364T|CDH23_uc001jrz.2_Missense_Mutation_p.A364T	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	748	Cadherin 7.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CATCGTTCGCGCAGTGGACGG	0.627000													10	38					0	0	0.008291	0	0
SLC22A8	9376	broad.mit.edu	37	11	62763251	62763251	+	Missense_Mutation	SNP	T	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr11:62763251T>C	uc001nwo.2	-	7	1062	c.926A>G	c.(925-927)AAG>AGG	p.K309R	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Missense_Mutation_p.K309R|SLC22A8_uc009yom.2_Missense_Mutation_p.K186R|SLC22A8_uc010rmm.1_Missense_Mutation_p.K218R|SLC22A8_uc009yon.2_Missense_Mutation_p.K309R	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	309	Cytoplasmic (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						GTACTTGGCCTTGGCCAAGGA	0.597000													77	155					0	0	0.003610	0	0
RELT	84957	broad.mit.edu	37	11	73102213	73102213	+	Silent	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr11:73102213C>T	uc001otv.2	+	5	477	c.312C>T	c.(310-312)CCC>CCT	p.P104P	RELT_uc001otw.2_Silent_p.P104P|RELT_uc009yto.1_Silent_p.P22P|RELT_uc001otx.2_5'Flank	NM_152222	NP_689408	Q969Z4	TR19L_HUMAN	RELT tumor necrosis factor receptor precursor	104	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	binding|receptor activity			upper_aerodigestive_tract(1)	1						GGGGGGTTCCCCGCGTTCCAT	0.587000													60	98					0	0	0.003610	0	0
SYTL2	54843	broad.mit.edu	37	11	85420400	85420400	+	Silent	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr11:85420400C>T	uc010rth.1	-	12	2250	c.1974G>A	c.(1972-1974)GCG>GCA	p.A658A	SYTL2_uc010rtg.1_Silent_p.A659A|SYTL2_uc010rti.1_Silent_p.A634A|SYTL2_uc010rtj.1_Silent_p.A626A|SYTL2_uc001pav.2_Silent_p.A100A|SYTL2_uc010rte.1_Silent_p.A60A|SYTL2_uc001pax.2_Silent_p.A100A|SYTL2_uc001paz.2_5'UTR|SYTL2_uc001pba.2_Silent_p.A43A|SYTL2_uc001pay.2_Silent_p.A89A|SYTL2_uc001paw.2_Silent_p.A60A|SYTL2_uc009yvj.2_RNA|SYTL2_uc001pbd.2_Silent_p.A956A|SYTL2_uc001pbb.2_Silent_p.A996A|SYTL2_uc001pbc.2_Silent_p.A980A|SYTL2_uc010rtf.1_Silent_p.A476A	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	658	C2 1.			A -> V (in Ref. 4; BAD18516).	intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		TTTTTACATCCGCTGCTGCTA	0.398000													49	121					0	0	0.003610	0	0
RDX	5962	broad.mit.edu	37	11	110104176	110104176	+	Missense_Mutation	SNP	T	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr11:110104176T>C	uc001pku.2	-	13	1683	c.1373A>G	c.(1372-1374)AAG>AGG	p.K458R	RDX_uc009yxx.1_RNA|RDX_uc009yxy.2_Missense_Mutation_p.K458R|RDX_uc009yxz.2_Missense_Mutation_p.K111R|RDX_uc009yya.2_Intron|RDX_uc001pks.2_5'UTR|RDX_uc001pkt.2_Missense_Mutation_p.K112R|RDX_uc010rwe.1_Missense_Mutation_p.K322R	NM_002906	NP_002897	P35241	RADI_HUMAN	radixin	458	Glu-rich.				actin filament capping	cleavage furrow|cytoskeleton|extrinsic to membrane|Golgi apparatus|nucleolus|plasma membrane	actin binding				0		all_cancers(61;7.18e-13)|all_epithelial(67;2.61e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.13e-06)|BRCA - Breast invasive adenocarcinoma(274;9.75e-06)|all cancers(92;5.9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0248)		TTCTTTGGTCTTTTCCAAGTC	0.358000													3	129					0	0	0.004672	0	0
CD3D	915	broad.mit.edu	37	11	118211223	118211223	+	Silent	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr11:118211223C>T	uc001pss.1	-	2	278	c.141G>A	c.(139-141)ACG>ACA	p.T47T	CD3D_uc001pst.1_Silent_p.T47T	NM_000732	NP_000723	P04234	CD3D_HUMAN	CD3 antigen, delta subunit isoform A precursor	47	Extracellular (Potential).				positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		GTGTTCCCACCGTTCCCTCTA	0.458000													16	46					0	0	0.007413	0	0
C11orf63	79864	broad.mit.edu	37	11	122774732	122774732	+	Silent	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr11:122774732G>A	uc001pym.2	+	3	741	c.444G>A	c.(442-444)CCG>CCA	p.P148P	C11orf63_uc001pyl.1_Silent_p.P148P	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	148										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		AAGCGTTGCCGGAGTCCACGG	0.532000													62	117					0	0	0.003610	0	0
DDX11	1663	broad.mit.edu	37	12	31244796	31244796	+	Silent	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr12:31244796C>T	uc001rjt.1	+	10	1484	c.1233C>T	c.(1231-1233)AGC>AGT	p.S411S	DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Silent_p.S411S|DDX11_uc001rjs.1_Silent_p.S411S|DDX11_uc001rju.1_Silent_p.S89S|DDX11_uc001rjv.1_Silent_p.S411S|DDX11_uc001rjw.1_Silent_p.S385S|DDX11_uc001rjx.1_Silent_p.S89S|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	411	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					TGGAGGTCAGCGGCTCCCAGG	0.662000										Multiple Myeloma(12;0.14)			4	106					0	0	0.000602	0	0
AGAP2	116986	broad.mit.edu	37	12	58126704	58126704	+	Silent	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr12:58126704G>A	uc001spq.2	-	6	1608	c.1608C>T	c.(1606-1608)TGC>TGT	p.C536C	AGAP2_uc001spp.2_Silent_p.C536C|AGAP2_uc001spr.2_Silent_p.C200C	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	536	G domain.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						TCATGTCCGCGCACAGAGCTC	0.567000													7	364					0	0	0.004482	0	0
LRIG3	121227	broad.mit.edu	37	12	59272814	59272814	+	Silent	SNP	A	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr12:59272814A>C	uc001sqr.2	-	14	2121	c.1875T>G	c.(1873-1875)GCT>GCG	p.A625A	LRIG3_uc009zqh.2_Silent_p.A565A|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	625	Ig-like C2-type 2.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			GCCCCACAGCAGCACACTCCA	0.587000													13	39					0	0	0.001855	0	0
COQ5	84274	broad.mit.edu	37	12	120966932	120966932	+	Missense_Mutation	SNP	C	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr12:120966932C>A	uc001tyn.2	-	1	33	c.13G>T	c.(13-15)GGG>TGG	p.G5W	COQ5_uc001tyo.2_5'UTR|COQ5_uc010szj.1_Missense_Mutation_p.G5W	NM_032314	NP_115690	Q5HYK3	COQ5_HUMAN	coenzyme Q5 homolog, methyltransferase	5					ubiquinone biosynthetic process	mitochondrion	methyltransferase activity			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCACAGCTCCCGGGGGCCGCC	0.652000													15	31					1.3612e-06	1.61499e-06	0.003163	1	0
LOC284232	284232	broad.mit.edu	37	13	19415849	19415849	+	RNA	SNP	T	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr13:19415849T>A	uc010tcj.1	-	1		c.30261A>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATTTCCTTCTTTGACCtttaa	0.249000													3	9					0	0	0.004672	0	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	G	G			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488000													4	96					0	0	0.000602	0	0
IL21R	50615	broad.mit.edu	37	16	27448929	27448929	+	Silent	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr16:27448929C>T	uc002doq.1	+	4	506	c.273C>T	c.(271-273)GAC>GAT	p.D91D	IL21R_uc002dor.1_Silent_p.D91D|IL21R_uc002dos.1_Silent_p.D91D	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	91	Extracellular (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						TCATGGCCGACGACATTTTCA	0.572000			T	BCL6	NHL								5	82					0	0	0.001168	0	0
ABCC12	94160	broad.mit.edu	37	16	48162529	48162529	+	Silent	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr16:48162529G>A	uc002efc.1	-	9	1702	c.1356C>T	c.(1354-1356)ACC>ACT	p.T452T	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Silent_p.T452T	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	452						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				ATTTCTTTGGGGTACTTTTCC	0.507000													33	65					0	0	0.001786	0	0
MMP15	4324	broad.mit.edu	37	16	58072238	58072238	+	Missense_Mutation	SNP	G	A	A	rs147283654		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr16:58072238G>A	uc002ena.2	+	3	1353	c.380G>A	c.(379-381)CGG>CAG	p.R127Q		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	127					protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						AACCTGCGGCGGCGTCGGAAG	0.647000													48	130					0	0	0.003610	0	0
PSKH1	5681	broad.mit.edu	37	16	67961376	67961376	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr16:67961376G>A	uc002euv.2	+	3	1276	c.1106G>A	c.(1105-1107)CGC>CAC	p.R369H		NM_006742	NP_006733	P11801	KPSH1_HUMAN	protein serine kinase H1	369						endoplasmic reticulum membrane|Golgi apparatus|microtubule organizing center|nuclear speck|plasma membrane	ATP binding|protein serine/threonine kinase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0044)|Epithelial(162;0.0197)|all cancers(182;0.128)		AACCTGCACCGCTCCATATCC	0.607000													48	83					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	16	90161571	90161571	+	Missense_Mutation	SNP	A	G	G			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr16:90161571A>G	uc002fqp.2	+	3	924	c.446A>G	c.(445-447)CAA>CGA	p.Q149R	uc002fqq.2_Missense_Mutation_p.Q166R					Homo sapiens, Similar to tubulin, beta, 2, clone IMAGE:4873024, mRNA.																		CAACTGGGCCAAGGGACGCTA	0.577000													3	38					0	0	0.004672	0	0
LILRB4	11006	broad.mit.edu	37	19	55179342	55179342	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr19:55179342C>T	uc002qgp.2	+	12	1581	c.1219C>T	c.(1219-1221)CCC>TCC	p.P407S	LILRB4_uc002qgq.2_Missense_Mutation_p.P406S|LILRB4_uc002qgr.2_Missense_Mutation_p.P449S|LILRB4_uc010ert.2_Missense_Mutation_p.P448S|LILRB4_uc010eru.2_Missense_Mutation_p.P437S	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	407	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		ATCTGAAGCCCCCCAGGATGT	0.647000													4	105					0	0	0.000248	0	0
NCOA1	8648	broad.mit.edu	37	2	24952593	24952593	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr2:24952593G>A	uc002rfk.2	+	15	3368	c.3110G>A	c.(3109-3111)GGC>GAC	p.G1037D	NCOA1_uc010eye.2_Missense_Mutation_p.G1037D|NCOA1_uc002rfi.2_Missense_Mutation_p.G886D|NCOA1_uc002rfj.2_Missense_Mutation_p.G1037D|NCOA1_uc002rfl.2_Missense_Mutation_p.G1037D	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	1037									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTGGCATGGGCATGCAGCCC	0.542000			T	PAX3	alveolar rhadomyosarcoma								4	194					0	0	0.000248	0	0
CAD	790	broad.mit.edu	37	2	27447693	27447693	+	Silent	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr2:27447693G>A	uc002rji.2	+	10	1497	c.1335G>A	c.(1333-1335)GGG>GGA	p.G445G	CAD_uc010eyw.2_Silent_p.G445G	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	445	CPSase (Carbamoyl-phosphate synthase).|CPSase A.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	CCTCCCAGGGGCTGGCCGACA	0.517000													4	246					0	0	0.000248	0	0
SPTBN1	6711	broad.mit.edu	37	2	54876248	54876248	+	Missense_Mutation	SNP	A	G	G			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr2:54876248A>G	uc002rxu.2	+	25	5372	c.5123A>G	c.(5122-5124)GAC>GGC	p.D1708G	SPTBN1_uc002rxx.2_Missense_Mutation_p.D1695G	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1708	Interaction with ANK2.|Spectrin 14.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CGGGAGGTGGACGACCTGGAG	0.542000													3	100					0	0	0.000248	0	0
TET3	200424	broad.mit.edu	37	2	74300737	74300737	+	Silent	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr2:74300737C>T	uc002skb.3	+	2	2151	c.2151C>T	c.(2149-2151)GTC>GTT	p.V717V	TET3_uc010fez.1_Silent_p.V717V	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	717							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCCCCACGGTCGCCTCTATCC	0.448000													3	27					0	0	0.000248	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								27	45					0	0	0.001786	0	0
C20orf24	55969	broad.mit.edu	37	20	35236193	35236193	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr20:35236193C>T	uc002xfq.2	+	2	378	c.190C>T	c.(190-192)CCA>TCA	p.P64S	C20orf24_uc002xfo.2_Missense_Mutation_p.P90S|C20orf24_uc002xfp.2_Missense_Mutation_p.P64S|C20orf24_uc002xft.2_RNA|C20orf24_uc002xfr.2_Missense_Mutation_p.P64S|C20orf24_uc002xfs.2_Missense_Mutation_p.P64S	NM_018840	NP_061328	Q9BUV8	CT024_HUMAN	RAB5-interacting protein isoform a	64							protein binding				0	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				GGGAGTTTTGCCATTACGAGG	0.393000													4	148					0	0	0.000248	0	0
STAU1	6780	broad.mit.edu	37	20	47732387	47732387	+	Silent	SNP	T	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr20:47732387T>C	uc002xud.2	-	13	2061	c.1650A>G	c.(1648-1650)TTA>TTG	p.L550L	STAU1_uc002xua.2_Silent_p.L469L|STAU1_uc002xub.2_Silent_p.L475L|STAU1_uc002xuc.2_Silent_p.L469L|STAU1_uc002xue.2_Silent_p.L469L|STAU1_uc002xuf.2_Silent_p.L475L|STAU1_uc002xug.2_Silent_p.L550L	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	550						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			ACAGCAACTTTAAGATGTTCA	0.512000													10	217					0	0	0.008291	0	0
GGT1	2678	broad.mit.edu	37	22	25023484	25023484	+	Missense_Mutation	SNP	A	G	G			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr22:25023484A>G	uc003aan.1	+	12	1593	c.1106A>G	c.(1105-1107)TAC>TGC	p.Y369C	GGT1_uc003aas.1_Missense_Mutation_p.Y369C|GGT1_uc003aat.1_Missense_Mutation_p.Y369C|GGT1_uc003aau.1_Missense_Mutation_p.Y369C|GGT1_uc003aav.1_Missense_Mutation_p.Y369C|GGT1_uc003aaw.1_Missense_Mutation_p.Y369C|GGT1_uc003aax.1_Missense_Mutation_p.Y369C|GGT1_uc003aay.1_Missense_Mutation_p.Y25C	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	369	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	ATCTCCTACTACAAGCCCGAG	0.632000													3	105					0	0	0.000248	0	0
SSTR3	6753	broad.mit.edu	37	22	37603800	37603800	+	Missense_Mutation	SNP	G	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr22:37603800G>T	uc003ara.2	-	2	105	c.43C>A	c.(43-45)CCT>ACT	p.P15T	SSTR3_uc003arb.2_Missense_Mutation_p.P15T	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	15	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						GCATTCTCAGGTTCTGAGGTC	0.632000													20	46					5.26018e-13	6.34849e-13	0.001882	1	0
MYH15	22989	broad.mit.edu	37	3	108172944	108172944	+	Missense_Mutation	SNP	C	G	G			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr3:108172944C>G	uc003dxa.1	-	22	2425	c.2368G>C	c.(2368-2370)GAT>CAT	p.D790H		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	790	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AGTCTCTCATCTCTTATTGCT	0.393000													5	51					0	0	0.000602	0	0
SPSB4	92369	broad.mit.edu	37	3	140785590	140785590	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr3:140785590C>T	uc003ett.2	+	2	898	c.644C>T	c.(643-645)GCC>GTC	p.A215V	SPSB4_uc010hum.2_Missense_Mutation_p.A215V	NM_080862	NP_543138	Q96A44	SPSB4_HUMAN	splA/ryanodine receptor domain and SOCS box	215	B30.2/SPRY.				intracellular signal transduction	cytoplasm	protein binding				0						GTGGTGAGTGCCGTGTGGGGC	0.617000													4	86					0	0	0.000602	0	0
SI	6476	broad.mit.edu	37	3	164767582	164767582	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr3:164767582G>A	uc003fei.2	-	14	1656	c.1594C>T	c.(1594-1596)CCT>TCT	p.P532S		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	532	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ATTTTACCAGGAGTAAACGGT	0.264000										HNSCC(35;0.089)			16	56					0	0	0.006122	0	0
PDE6B	5158	broad.mit.edu	37	4	658702	658702	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr4:658702C>T	uc003gap.2	+	18	2215	c.2162C>T	c.(2161-2163)GCC>GTC	p.A721V	PDE6B_uc003gao.3_Missense_Mutation_p.A721V|PDE6B_uc011buy.1_Missense_Mutation_p.A442V|PDE6B_uc011buz.1_Missense_Mutation_p.A153V	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	721					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GACCTGTCTGCCATCACCAAG	0.602000													4	99					0	0	0.000602	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13339453	13339453	+	RNA	SNP	G	A	A	rs16898654	by1000genomes	TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr4:13339453G>A	uc003gms.2	+	1		c.4417G>A				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						GATGCCACCCGTCTGAGCTGC	0.428000													8	15					0	0	0.006214	0	0
YTHDC1	91746	broad.mit.edu	37	4	69179953	69179953	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr4:69179953C>T	uc003hdx.2	-	17	2401	c.2048G>A	c.(2047-2049)CGG>CAG	p.R683Q	YTHDC1_uc003hdy.2_Missense_Mutation_p.R665Q	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	683	Arg-rich.									upper_aerodigestive_tract(1)|ovary(1)	2						ctctcgttcccggtctctttc	0.214000													15	21					0	0	0.002450	0	0
ODZ2	57451	broad.mit.edu	37	5	167674845	167674845	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr5:167674845C>T	uc010jjd.2	+	27	6874	c.6874C>T	c.(6874-6876)CGC>TGC	p.R2292C	ODZ2_uc003lzr.3_Missense_Mutation_p.R2062C|ODZ2_uc003lzt.3_Missense_Mutation_p.R1665C|ODZ2_uc010jje.2_Missense_Mutation_p.R1556C	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGTCCAGTACCGCTATGATGG	0.567000													38	107					0	0	0.005524	0	0
BTNL3	10917	broad.mit.edu	37	5	180420089	180420089	+	Missense_Mutation	SNP	T	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr5:180420089T>A	uc003mmr.2	+	2	454	c.326T>A	c.(325-327)ATC>AAC	p.I109N		NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	109	Extracellular (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			CCCTCGGACATCGGCCTGTAT	0.522000													13	2					0	0	0.001855	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33405883	33405883	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr6:33405883C>T	uc011dri.1	+	8	1396	c.1201C>T	c.(1201-1203)CGG>TGG	p.R401W	SYNGAP1_uc003oeo.1_Missense_Mutation_p.R386W|SYNGAP1_uc010juy.2_Missense_Mutation_p.R386W|SYNGAP1_uc010juz.2_Missense_Mutation_p.R113W	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	401					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CCCGGCTGTGCGGCTGAAAGC	0.592000													22	163					0	0	0.003330	0	0
C6orf125	84300	broad.mit.edu	37	6	33665498	33665498	+	Missense_Mutation	SNP	T	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr6:33665498T>C	uc003ofa.1	-	4	354	c.313A>G	c.(313-315)AAA>GAA	p.K105E	C6orf125_uc003oez.1_RNA	NM_032340	NP_115716	Q9BRT2	CF125_HUMAN	hypothetical protein LOC84300	105											0						CACATGCCTTTATCTATTTCC	0.478000													24	56					0	0	0.006320	0	0
SYNE1	23345	broad.mit.edu	37	6	152831491	152831491	+	Missense_Mutation	SNP	T	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr6:152831491T>C	uc010kiw.2	-	8	1020	c.418A>G	c.(418-420)AGC>GGC	p.S140G	SYNE1_uc003qot.3_Missense_Mutation_p.S147G|SYNE1_uc003qou.3_Missense_Mutation_p.S140G|SYNE1_uc010kjb.1_Missense_Mutation_p.S140G|SYNE1_uc003qpa.1_Missense_Mutation_p.S140G	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	140	Actin-binding.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GGCAGGTTGCTGGTCAACTCT	0.448000										HNSCC(10;0.0054)			32	43					0	0	0.002836	0	0
MGAM	8972	broad.mit.edu	37	7	141799485	141799485	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr7:141799485C>T	uc003vwy.2	+	44	5188	c.5134C>T	c.(5134-5136)CGT>TGT	p.R1712C		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1712	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCTTCATGTCCGTGGGGGCTA	0.498000													8	87					0	0	0.003080	0	0
SSPO	23145	broad.mit.edu	37	7	149486393	149486393	+	Silent	SNP	C	T	T	rs116737043	by1000genomes	TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr7:149486393C>T	uc010lpk.2	+	30	4369	c.4369C>T	c.(4369-4371)CTG>TTG	p.L1457L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1457	LDL-receptor class A 3.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCAGGGCTTGCTGGCCTGTGC	0.677000													3	40					0	0	0.000248	0	0
CLN8	2055	broad.mit.edu	37	8	1728624	1728624	+	Missense_Mutation	SNP	A	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr8:1728624A>C	uc003wpo.3	+	3	1057	c.752A>C	c.(751-753)CAT>CCT	p.H251P		NM_018941	NP_061764	Q9UBY8	CLN8_HUMAN	ceroid-lipofuscinosis, neuronal 8	251	TLC.				cell death|ceramide biosynthetic process|cholesterol metabolic process|lipid transport|negative regulation of proteolysis|phospholipid metabolic process	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(12;0.0563)|Colorectal(14;0.0815)|Hepatocellular(245;0.0831)		BRCA - Breast invasive adenocarcinoma(11;7.67e-05)|READ - Rectum adenocarcinoma(644;0.0913)		TATTGGACCCATAAGAAGACT	0.542000													31	161					0	0	0.001786	0	0
MLLT3	4300	broad.mit.edu	37	9	20360828	20360828	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr9:20360828C>T	uc003zoe.2	-	8	1602	c.1343G>A	c.(1342-1344)AGT>AAT	p.S448N	MLLT3_uc011lne.1_Missense_Mutation_p.S416N|MLLT3_uc011lnf.1_Missense_Mutation_p.S445N	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	448					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		GCTGCCATCACTTAAGCTAAC	0.418000			T	MLL	ALL								11	42					0	0	0.008291	0	0
OR1L3	26735	broad.mit.edu	37	9	125437655	125437655	+	Missense_Mutation	SNP	G	A	A	rs142972365		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr9:125437655G>A	uc011lzb.1	+	1	247	c.247G>A	c.(247-249)GTG>ATG	p.V83M		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAAGATGCTCGTGAACTTCTT	0.398000													57	139					0	0	0.003610	0	0
FRMPD4	9758	broad.mit.edu	37	X	12735805	12735805	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chrX:12735805C>T	uc004cuz.1	+	16	3366	c.2860C>T	c.(2860-2862)CCG>TCG	p.P954S	FRMPD4_uc011mij.1_Missense_Mutation_p.P946S	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	954					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GACCGAGTTCCCGGCCTCCAA	0.607000													7	248					0	0	0.001984	0	0
MAGIX	79917	broad.mit.edu	37	X	49022446	49022446	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chrX:49022446G>A	uc010nin.1	+	6	760	c.713G>A	c.(712-714)GGA>GAA	p.G238E	MAGIX_uc010nio.1_Missense_Mutation_p.G162E|MAGIX_uc004dmt.2_Missense_Mutation_p.G157E|MAGIX_uc004dmu.2_Missense_Mutation_p.G179E|MAGIX_uc004dmw.2_Missense_Mutation_p.G166E	NM_024859	NP_079135	Q9H6Y5	MAGIX_HUMAN	MAGI family member, X-linked isoform a	238											0						CCAGATCCTGGAGGGCCGGAG	0.617000													29	68					0	0	0.001786	0	0
DGKK	139189	broad.mit.edu	37	X	50213438	50213438	+	Silent	SNP	T	C	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chrX:50213438T>C	uc010njr.1	-	1	300	c.240A>G	c.(238-240)GAA>GAG	p.E80E		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	80	9.|33 X 4 AA approximate tandem repeats of E-P-A-P.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					ctggggtcggTTCTGTGTACA	0.294000													17	347					0	0	0.007413	0	0
PCDH19	57526	broad.mit.edu	37	X	99662276	99662276	+	Silent	SNP	G	A	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chrX:99662276G>A	uc010nmz.2	-	1	2996	c.1320C>T	c.(1318-1320)ACC>ACT	p.T440T	PCDH19_uc004efw.3_Silent_p.T440T|PCDH19_uc004efx.3_Silent_p.T440T	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	440	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TGATGAGCACGGTAAAGGACT	0.577000													4	147					0	0	0.000602	0	0
COL4A5	1287	broad.mit.edu	37	X	107816843	107816843	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chrX:107816843C>T	uc004enz.1	+	9	707	c.505C>T	c.(505-507)CCA>TCA	p.P169S	COL4A5_uc011mso.1_Missense_Mutation_p.P169S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	169	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						ACTGCCAGGACCAAAGGGTAA	0.363000									Alport_syndrome_with_Diffuse_Leiomyomatosis				46	128					0	0	0.003610	0	0
SAGE1	55511	broad.mit.edu	37	X	134992597	134992597	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chrX:134992597C>T	uc004ezh.2	+	16	2055	c.1888C>T	c.(1888-1890)CGT>TGT	p.R630C	SAGE1_uc010nry.1_Missense_Mutation_p.R599C|SAGE1_uc011mvv.1_Missense_Mutation_p.R254C	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	630										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TCACAACATCCGTGAAGAGAA	0.488000													63	126					0	0	0.003610	0	0
LRRC43	254050	broad.mit.edu	37	12	122677545	122677545	+	Frame_Shift_Del	DEL	C	-	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr12:122677545delC	uc009zxm.2	+	7	1368	c.1343delC	c.(1342-1344)TCCfs	p.S448fs	LRRC43_uc001ubw.3_Frame_Shift_Del_p.S263fs|LRRC43_uc009zxn.2_Frame_Shift_Del_p.S209fs	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	448											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		CTCTGCCCGTCCCCAGGGTAA	0.577													10	36	---	---	---	---					
HTR2A	3356	broad.mit.edu	37	13	47409749	47409750	+	Frame_Shift_Del	DEL	AA	-	-	rs143289722		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr13:47409749_47409750delAA	uc001vbq.2	-	3	772_773	c.638_639delTT	c.(637-639)TTTfs	p.F213fs	HTR2A_uc001vbr.2_Frame_Shift_Del_p.F113fs|HTR2A_uc010acr.2_Frame_Shift_Del_p.F213fs	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	213	Helical; Name=4; (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CCTGTAGCCCAAAGACTGGTAT	0.396													22	86	---	---	---	---					
TYK2	7297	broad.mit.edu	37	19	10479066	10479067	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr19:10479066_10479067delAA	uc002moc.3	-	4	599_600	c.221_222delTT	c.(220-222)TTTfs	p.F74fs	TYK2_uc010dxe.2_Intron|TYK2_uc002mod.2_Frame_Shift_Del_p.F74fs	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	74	FERM.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			CGAAGAGGGCAAAGAGATTGAA	0.540													48	110	---	---	---	---					
LGALS13	29124	broad.mit.edu	37	19	40097866	40097868	+	In_Frame_Del	DEL	AAG	-	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr19:40097866_40097868delAAG	uc002omb.2	+	4	347_349	c.307_309delAAG	c.(307-309)AAGdel	p.K103del		NM_013268	NP_037400	Q9UHV8	PP13_HUMAN	galectin-13	103	Galectin.				lipid catabolic process|phospholipid metabolic process		carboxylesterase activity|lysophospholipase activity|sugar binding			ovary(1)	1	all_cancers(60;1.77e-05)|all_lung(34;5.38e-08)|Lung NSC(34;6.37e-08)|Ovarian(47;0.116)		Epithelial(26;3.28e-26)|OV - Ovarian serous cystadenocarcinoma(5;7.31e-25)|all cancers(26;1.15e-23)|LUSC - Lung squamous cell carcinoma(53;0.00281)			CTTGTAGATAAAGGTCAATGGCA	0.458													31	40	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42796905	42796906	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr19:42796905_42796906delTG	uc002otf.1	+	14	3403_3404	c.3363_3364delTG	c.(3361-3366)ACTGTGfs	p.T1121fs		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1121_1122	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				TGGTCTACACTGTGGCCACCAG	0.668			T	DUX4	soft tissue sarcoma								26	73	---	---	---	---					
SYNJ2	8871	broad.mit.edu	37	6	158504625	158504627	+	In_Frame_Del	DEL	AGA	-	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr6:158504625_158504627delAGA	uc003qqx.1	+	21	3105_3107	c.3030_3032delAGA	c.(3028-3033)TCAGAA>TCA	p.E1011del	SYNJ2_uc003qqw.1_In_Frame_Del_p.E1011del|SYNJ2_uc003qqy.1_In_Frame_Del_p.E724del|SYNJ2_uc003qqz.1_In_Frame_Del_p.E628del|SYNJ2_uc003qra.1_In_Frame_Del_p.E354del	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1011	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		ACTATGAGTCAGAAGGTTAGTGA	0.517													33	143	---	---	---	---					
ACTB	60	broad.mit.edu	37	7	5567674	5567676	+	In_Frame_Del	DEL	CTT	-	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr7:5567674_5567676delCTT	uc003sos.3	-	4	979_981	c.943_945delAAG	c.(943-945)AAGdel	p.K315del	ACTB_uc003sor.3_In_Frame_Del_p.K193del|ACTB_uc003sot.3_In_Frame_Del_p.K315del|ACTB_uc003soq.3_In_Frame_Del_p.K193del|ACTB_uc010ksy.2_In_Frame_Del_p.K193del	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	315					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		CAGTGATCTCCTTCTGCATCCTG	0.581													8	245	---	---	---	---					
MLL3	58508	broad.mit.edu	37	7	151845685	151845686	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr7:151845685_151845686delGA	uc003wla.2	-	52	13545_13546	c.13326_13327delTC	c.(13324-13329)ACTCAGfs	p.T4442fs	MLL3_uc003wkz.2_Frame_Shift_Del_p.T3560fs|MLL3_uc003wkx.2_Frame_Shift_Del_p.T600fs|MLL3_uc003wky.2_Frame_Shift_Del_p.T2006fs	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4442_4443					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GCACCAGCCTGAGTCTCATAGA	0.515			N		medulloblastoma								37	177	---	---	---	---					
UCK1	83549	broad.mit.edu	37	9	134404915	134404915	+	Frame_Shift_Del	DEL	T	-	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chr9:134404915delT	uc004cay.2	-	3	426	c.325delA	c.(325-327)ACGfs	p.T109fs	UCK1_uc010mzk.2_Frame_Shift_Del_p.T100fs|UCK1_uc004cba.2_Frame_Shift_Del_p.T109fs|UCK1_uc004caz.2_RNA	NM_031432	NP_113620	Q9HA47	UCK1_HUMAN	uridine-cytidine kinase 1 isoform a	109					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;2.34e-05)|Epithelial(140;0.000219)		ACCTCCACCGTTTTGCCCTCC	0.557													47	116	---	---	---	---					
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	-	-	rs72249350		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chrX:38079976_38079978delGCA	uc004ddy.1	-	1	154_156	c.68_70delTGC	c.(67-72)CTGCGC>CGC	p.L23del	SRPX_uc004ddz.1_In_Frame_Del_p.L23del|SRPX_uc011mkh.1_In_Frame_Del_p.L23del|SRPX_uc011mki.1_In_Frame_Del_p.L23del	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	23			Missing.		cell adhesion	cell surface|membrane					0						GGCGGGACGCgcagcagcagcag	0.576											OREG0019726	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	9	---	---	---	---					
RPGR	6103	broad.mit.edu	37	X	38145181	38145192	+	In_Frame_Del	DEL	TCCCCTTCCACT	-	-	rs144299434	byFrequency	TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	g.chrX:38145181_38145192delTCCCCTTCCACT	uc004ded.1	-	15	3228_3239	c.3060_3071delAGTGGAAGGGGA	c.(3058-3072)GAAGTGGAAGGGGAG>GAG	p.1020_1024EVEGE>E	RPGR_uc004deb.2_Intron|RPGR_uc004dea.2_Intron|RPGR_uc004dec.2_Intron	NM_001034853	NP_001030025	Q92834	RPGR_HUMAN	retinitis pigmentosa GTPase regulator isoform C	810_Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport|response to stimulus|visual perception	Golgi apparatus|photoreceptor outer segment	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						cccttccacctccccttccacttccccttcct	0.000													7	9	---	---	---	---					
