Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LCE5A	254910	broad.mit.edu	37	1	152484246	152484246	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr1:152484246G>A	uc001ezy.2	+	2	412	c.236G>A	c.(235-237)CGA>CAA	p.R79Q	CRCT1_uc001ezz.2_5'Flank	NM_178438	NP_848525	Q5TCM9	LCE5A_HUMAN	late cornified envelope 5A	79	Cys-rich.				keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGTCCCTCCGACGCCGACCT	0.682000													19	16					0	0	0.760397	0	0
GDPD5	81544	broad.mit.edu	37	11	75148073	75148073	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr11:75148073C>T	uc001owo.3	-	17	2114	c.1577G>A	c.(1576-1578)CGG>CAG	p.R526Q	GDPD5_uc001owp.3_Missense_Mutation_p.R526Q|GDPD5_uc001own.3_Missense_Mutation_p.R281Q|GDPD5_uc009yuc.2_Missense_Mutation_p.R388Q|GDPD5_uc009yud.2_Missense_Mutation_p.R407Q	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	526	Cytoplasmic (Potential).				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						GTTGTAGCTCCGTATGCCACC	0.607000													3	51					0	0	0.184627	0	0
OR10G4	390264	broad.mit.edu	37	11	123886809	123886809	+	Silent	SNP	C	T	T	rs3017763		TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr11:123886809C>T	uc010sac.1	+	1	528	c.528C>T	c.(526-528)TAC>TAT	p.Y176Y		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TCCAGCACTACTTCTGTGACG	0.557000													5	225					0	0	0.307466	0	0
OR10G4	390264	broad.mit.edu	37	11	123886812	123886812	+	Missense_Mutation	SNP	C	G	G	rs3017764		TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr11:123886812C>G	uc010sac.1	+	1	531	c.531C>G	c.(529-531)TTC>TTG	p.F177L		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		AGCACTACTTCTGTGACGCAC	0.552000													4	219					0	0	0.248553	0	0
DPY19L2	283417	broad.mit.edu	37	12	64057543	64057543	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr12:64057543C>T	uc001srp.1	-	3	626	c.445G>A	c.(445-447)GAA>AAA	p.E149K	DPY19L2_uc009zqk.1_Intron	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	149					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		CTAACCATTTCAGTGCGAAAA	0.333000													27	54					0	0	0.769981	0	0
TMEM19	55266	broad.mit.edu	37	12	72091160	72091160	+	Silent	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr12:72091160C>T	uc001sws.2	+	4	1066	c.483C>T	c.(481-483)GTC>GTT	p.V161V	TMEM19_uc001swr.1_Silent_p.V147V|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	161						integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		AAATCCCAGTCGATTTTTCCA	0.532000													8	92					0	0	0.307466	0	0
LTB4R	1241	broad.mit.edu	37	14	24785074	24785074	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr14:24785074T>C	uc001wos.2	+	2	538	c.217T>C	c.(217-219)TTT>CTT	p.F73L	LTB4R_uc010alp.2_Missense_Mutation_p.F73L|LTB4R_uc001wou.2_Missense_Mutation_p.F73L	NM_001143919	NP_001137391	Q15722	LT4R1_HUMAN	leukotriene B4 receptor	73	Helical; Name=2; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular component movement|immune response|inflammatory response|muscle contraction	integral to plasma membrane	nucleotide binding				0				GBM - Glioblastoma multiforme(265;0.018)		CACTGCTCCCTTTTTCCTTCA	0.582000													3	157					0	0	0.115264	0	0
MYO5C	55930	broad.mit.edu	37	15	52537632	52537632	+	Silent	SNP	G	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr15:52537632G>A	uc010bff.2	-	18	2234	c.2097C>T	c.(2095-2097)TAC>TAT	p.Y699Y	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	699	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TGAGAATGCCGTAGCGACTGT	0.507000													4	136					0	0	0.184627	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76482070	76482070	+	Silent	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr16:76482070C>T	uc002feu.1	+	7	1085	c.700C>T	c.(700-702)CTG>TTG	p.L234L	CNTNAP4_uc002fev.1_Silent_p.L146L|CNTNAP4_uc010chb.1_Silent_p.L209L|CNTNAP4_uc002fex.1_Silent_p.L237L|CNTNAP4_uc002few.2_Silent_p.L209L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	234	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TCACATCACACTGCAATTAAG	0.368000													3	43					0	0	0.115264	0	0
ZZEF1	23140	broad.mit.edu	37	17	3924509	3924509	+	Missense_Mutation	SNP	G	A	A	rs146431554	byFrequency	TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr17:3924509G>A	uc002fxe.2	-	45	7382	c.7318C>T	c.(7318-7320)CGG>TGG	p.R2440W		NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2440							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTGACTGGCCGTTCCACCTCT	0.557000													4	100					0	0	0.150653	0	0
DNAH9	1770	broad.mit.edu	37	17	11554444	11554444	+	Missense_Mutation	SNP	C	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr17:11554444C>A	uc002gne.2	+	13	2224	c.2156C>A	c.(2155-2157)CCT>CAT	p.P719H	DNAH9_uc010coo.2_Missense_Mutation_p.P13H	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	719	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AAACACATGCCTGAGACAGCA	0.433000													73	114					7.68447e-34	8.66966e-34	0.870114	1	0
UTS2R	2837	broad.mit.edu	37	17	80332481	80332481	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr17:80332481C>T	uc010wvl.1	+	1	281	c.281C>T	c.(280-282)GCG>GTG	p.A94V		NM_018949	NP_061822	Q9UKP6	UR2R_HUMAN	urotensin 2 receptor	94	Helical; Name=2; (Potential).					integral to membrane|plasma membrane				breast(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.00928)|BRCA - Breast invasive adenocarcinoma(99;0.0833)			GTCAACCTGGCGCTGGCCGAC	0.662000													7	12					0	0	0.248553	0	0
MUC16	94025	broad.mit.edu	37	19	9090831	9090831	+	Silent	SNP	A	G	G			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr19:9090831A>G	uc002mkp.2	-	1	1188	c.984T>C	c.(982-984)CCT>CCC	p.P328P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	328	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATGGAAAAAGGGATAGCTG	0.522000													4	84					0	0	0.150653	0	0
CIC	23152	broad.mit.edu	37	19	42791757	42791757	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr19:42791757C>T	uc002otf.1	+	5	683	c.643C>T	c.(643-645)CGG>TGG	p.R215W		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	215	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CAAGCGGCACCGGGCCCTGGT	0.612000			T	DUX4	soft tissue sarcoma								36	20					0	0	0.827153	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55285075	55285075	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr19:55285075G>A	uc002qhb.1	+	3	399	c.361G>A	c.(361-363)GTG>ATG	p.V121M	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.V121M	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	121	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TCTGGACATCGTGATCATAGG	0.517000													10	193					0	0	0.387290	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612000													5	17					0	0	0.184627	0	0
LCT	3938	broad.mit.edu	37	2	136545987	136545987	+	Silent	SNP	G	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr2:136545987G>T	uc002tuu.1	-	17	5702	c.5691C>A	c.(5689-5691)GGC>GGA	p.G1897G		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1897	Helical; (Potential).				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAAATGCCAAGCCACAGACTC	0.493000													7	185					2.0095e-06	2.10519e-06	0.248553	1	0
GTF3C3	9330	broad.mit.edu	37	2	197657737	197657737	+	Silent	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr2:197657737C>T	uc002uts.2	-	3	444	c.354G>A	c.(352-354)GCG>GCA	p.A118A	GTF3C3_uc010zgu.1_Silent_p.A118A|GTF3C3_uc002utu.2_Silent_p.A118A	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	118						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						ATACATCGCCCGCAGTGGGTT	0.279000													16	32					0	0	0.654019	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								28	51					0	0	0.788014	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652338	234652338	+	Silent	SNP	G	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr2:234652338G>A	uc002vuz.2	-	1	324	c.225C>T	c.(223-225)GGC>GGT	p.G75G	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	75					protein folding		heat shock protein binding|unfolded protein binding				0						CTGTGCAGCCGCCCTCCGCCC	0.652000													69	86					0	0	0.870114	0	0
THOC5	8563	broad.mit.edu	37	22	29913039	29913039	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr22:29913039C>T	uc003afr.2	-	18	1995	c.1660G>A	c.(1660-1662)GCG>ACG	p.A554T	THOC5_uc003afq.2_Missense_Mutation_p.A215T|THOC5_uc003afs.2_Missense_Mutation_p.A554T|THOC5_uc003aft.2_Missense_Mutation_p.A554T|THOC5_uc003afu.2_Missense_Mutation_p.A554T|THOC5_uc010gvo.2_Missense_Mutation_p.A298T	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	554					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						TCGATGAGCGCCATGTAGTAG	0.537000													5	173					0	0	0.184627	0	0
DDX17	10521	broad.mit.edu	37	22	38890935	38890935	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr22:38890935T>C	uc003avy.3	-	7	1100	c.997A>G	c.(997-999)ATG>GTG	p.M333V	DDX17_uc003avx.3_Missense_Mutation_p.M333V|DDX17_uc011anu.1_Missense_Mutation_p.M246V	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	254	Helicase ATP-binding.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					TCAAACCCCATATCAAGCATT	0.433000													4	147					0	0	0.150653	0	0
ZPLD1	131368	broad.mit.edu	37	3	102181219	102181219	+	Missense_Mutation	SNP	G	A	A	rs150699636		TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr3:102181219G>A	uc003dvs.1	+	13	1559	c.677G>A	c.(676-678)GGC>GAC	p.G226D	ZPLD1_uc003dvt.1_Missense_Mutation_p.G242D|ZPLD1_uc011bhg.1_Missense_Mutation_p.G226D	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	226	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						AATTTGGATGGCAGGTAATTT	0.358000													12	18					0	0	0.624587	0	0
MUC4	4585	broad.mit.edu	37	3	195511877	195511877	+	Missense_Mutation	SNP	G	A	A	rs55824312		TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr3:195511877G>A	uc011bto.1	-	2	7034	c.6574C>T	c.(6574-6576)CCT>TCT	p.P2192S	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		ACAGGAAGAGGGGTGGCGTGA	0.597000													2	4					0	0	0.150653	0	0
HMGB2	3148	broad.mit.edu	37	4	174254247	174254247	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr4:174254247T>C	uc011ckc.1	-	2	389	c.269A>G	c.(268-270)AAG>AGG	p.K90R	HMGB2_uc003ita.3_Missense_Mutation_p.K90R|HMGB2_uc003itb.2_Missense_Mutation_p.K90R|HMGB2_uc003itc.2_Missense_Mutation_p.K90R	NM_001130689	NP_001124161	P26583	HMGB2_HUMAN	high-mobility group box 2	90					base-excision repair, DNA ligation|cell chemotaxis|cellular response to lipopolysaccharide|DNA fragmentation involved in apoptotic nuclear change|DNA topological change|negative regulation of transcription, DNA-dependent|nucleosome assembly|phosphatidylinositol-mediated signaling|positive regulation of DNA binding|positive regulation of endothelial cell proliferation|positive regulation of erythrocyte differentiation|positive regulation of megakaryocyte differentiation|positive regulation of nuclease activity|positive regulation of transcription from RNA polymerase II promoter|V(D)J recombination	condensed chromosome|extracellular space|nucleolus|nucleoplasm|perinuclear region of cytoplasm|protein complex	chemoattractant activity|damaged DNA binding|DNA bending activity|double-stranded DNA binding|RAGE receptor binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding|transcription regulatory region DNA binding				0		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;9.58e-18)|Epithelial(43;3.75e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.24e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		ATTGGGGTCCTTTTTCTTCCC	0.398000													3	187					0	0	0.184627	0	0
GPRIN1	114787	broad.mit.edu	37	5	176026758	176026758	+	Silent	SNP	G	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr5:176026758G>A	uc003meo.1	-	2	253	c.78C>T	c.(76-78)GCC>GCT	p.A26A		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	26						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCAGAAGAAGGCTGTGGGTC	0.642000													20	32					0	0	0.592651	0	0
PURB	5814	broad.mit.edu	37	7	44924053	44924053	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr7:44924053C>T	uc003tme.2	-	1	908	c.895G>A	c.(895-897)GGC>AGC	p.G299S		NM_033224	NP_150093	Q96QR8	PURB_HUMAN	purine-rich element binding protein B	299					regulation of myeloid cell differentiation	DNA replication factor A complex	mRNA binding|single-stranded DNA binding|transcription factor binding				0						TCGCCGCCGCCGCTGCCCCCA	0.587000													4	177					0	0	0.184627	0	0
TRRAP	8295	broad.mit.edu	37	7	98576479	98576479	+	Silent	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr7:98576479C>T	uc003upp.2	+	57	8774	c.8565C>T	c.(8563-8565)TGC>TGT	p.C2855C	TRRAP_uc011kis.1_Silent_p.C2837C|TRRAP_uc003upr.2_Silent_p.C2554C	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2855	FAT.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TCCTGGAGTGCGCCTGGCGGG	0.617000													4	71					0	0	0.150653	0	0
NEFM	4741	broad.mit.edu	37	8	24772187	24772187	+	Missense_Mutation	SNP	G	C	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr8:24772187G>C	uc003xed.3	+	1	914	c.881G>C	c.(880-882)TGC>TCC	p.C294S	NEFM_uc011lac.1_Missense_Mutation_p.C294S|NEFM_uc010lue.2_5'Flank|uc010luc.1_5'UTR	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	294	Rod.|Coil 2B.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		TGGTTCAAATGCCGCTACGCC	0.602000													6	55					0	0	0.217242	0	0
ZFAND5	7763	broad.mit.edu	37	9	74970965	74970965	+	Silent	SNP	G	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr9:74970965G>A	uc004aiv.2	-	6	824	c.546C>T	c.(544-546)GAC>GAT	p.D182D	ZFAND5_uc010mox.1_Silent_p.D79D|ZFAND5_uc010moy.1_Silent_p.D182D|ZFAND5_uc004aix.2_Silent_p.D182D|ZFAND5_uc004aiw.2_Silent_p.D182D|ZFAND5_uc004aiy.2_Silent_p.D182D	NM_006007	NP_005998	O76080	ZFAN5_HUMAN	zinc finger, AN1-type domain 5	182	AN1-type.						DNA binding|zinc ion binding				0						AGTTGTGCTTGTCAGAGTAAC	0.378000													31	39					0	0	0.779181	0	0
Unknown	0	broad.mit.edu	37	9	88457639	88457639	+	RNA	SNP	A	C	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr9:88457639A>C	uc004aog.1	+	9		c.1574A>C			uc004aoh.1_Missense_Mutation_p.D29A					Homo sapiens cDNA FLJ42532 fis, clone BRACE3003004.																		TTTTTTAAAGATTTAAAGATT	0.299000													5	45					0	0	0.217242	0	0
ST6GALNAC4	27090	broad.mit.edu	37	9	130672316	130672316	+	Silent	SNP	G	C	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr9:130672316G>C	uc004bss.2	-	5	909	c.633C>G	c.(631-633)CTC>CTG	p.L211L	ST6GALNAC4_uc004bst.2_Silent_p.L127L	NM_175039	NP_778204	Q9H4F1	SIA7D_HUMAN	sialyltransferase 7D isoform a	211	Lumenal (Potential).				glycolipid metabolic process|protein glycosylation	integral to Golgi membrane|nucleus|soluble fraction	(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity				0						AGCCGGTGCTGAGGAAGGAGC	0.642000													14	33					0	0	0.500413	0	0
NOTCH1	4851	broad.mit.edu	37	9	139412302	139412302	+	Missense_Mutation	SNP	C	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr9:139412302C>A	uc004chz.2	-	8	1343	c.1343G>T	c.(1342-1344)CGA>CTA	p.R448L		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	448	Extracellular (Potential).|EGF-like 11; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GATCTCGCATCGGGGGCCCGT	0.647000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			6	90					5.18039e-06	5.30087e-06	0.278610	1	0
KAL1	3730	broad.mit.edu	37	X	8503844	8503844	+	Missense_Mutation	SNP	G	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chrX:8503844G>T	uc004csf.2	-	12	1780	c.1630C>A	c.(1630-1632)CTT>ATT	p.L544I		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	544					axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						ACCTTAGAAAGAACATGACCT	0.483000													18	36					1.66031e-10	1.82634e-10	0.667858	1	0
USP11	8237	broad.mit.edu	37	X	47104794	47104794	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chrX:47104794G>A	uc004dhp.2	+	17	2312	c.2312G>A	c.(2311-2313)GGG>GAG	p.G771E	USP11_uc004dhq.2_Missense_Mutation_p.G497E	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	771					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GACTGCGTCGGGTACGTGATG	0.597000													16	38					0	0	0.539581	0	0
HUWE1	10075	broad.mit.edu	37	X	53661216	53661216	+	Missense_Mutation	SNP	G	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chrX:53661216G>T	uc004dsp.2	-	8	941	c.539C>A	c.(538-540)GCA>GAA	p.A180E		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	180					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GCAACATTCTGCAAGTCCAAA	0.338000													3	102					4.096e-09	4.39571e-09	0.217242	1	0
ATRX	546	broad.mit.edu	37	X	76937357	76937357	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chrX:76937357T>C	uc004ecp.3	-	9	3623	c.3391A>G	c.(3391-3393)AGA>GGA	p.R1131G	ATRX_uc004ecq.3_Missense_Mutation_p.R1093G|ATRX_uc004eco.3_Missense_Mutation_p.R916G|ATRX_uc004ecr.2_Missense_Mutation_p.R1063G|ATRX_uc010nlx.1_Missense_Mutation_p.R1102G|ATRX_uc010nly.1_Missense_Mutation_p.R1076G	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1131					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	AATTCTATTCTTTTCAGTCTC	0.343000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						58	65					0	0	0.870114	0	0
ARMCX2	9823	broad.mit.edu	37	X	100912542	100912542	+	Silent	SNP	C	T	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chrX:100912542C>T	uc004eid.2	-	3	388	c.33G>A	c.(31-33)GCG>GCA	p.A11A	ARMCX2_uc004eie.3_Silent_p.A11A|ARMCX2_uc004eif.3_Silent_p.A11A|ARMCX2_uc004eig.3_Silent_p.A11A|ARMCX2_uc010nnt.2_Silent_p.A11A	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	11	Helical; (Potential).					integral to membrane	binding			ovary(6)	6						CTATCCCCGCCGCTACACAGC	0.552000													63	101					0	0	0.870114	0	0
FLNA	2316	broad.mit.edu	37	X	153593614	153593614	+	Silent	SNP	G	A	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chrX:153593614G>A	uc004fkk.2	-	11	1830	c.1581C>T	c.(1579-1581)CGC>CGT	p.R527R	FLNA_uc010nuu.1_Silent_p.R527R	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	527	Filamin 3.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCTGCTTCACGCGCTCCTCTC	0.622000													5	159					0	0	0.248553	0	0
FRG2B	441581	broad.mit.edu	37	10	135438960	135438960	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr10:135438960delC	uc010qvg.1	-	4	533	c.480delG	c.(478-480)AGGfs	p.R160fs		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	160						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GGGCCCGAGACCTATGCCGCT	0.557													7	280	---	---	---	---					
GPR19	2842	broad.mit.edu	37	12	12814274	12814274	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr12:12814274delT	uc001rar.3	-	2	1302	c.1109delA	c.(1108-1110)AACfs	p.N370fs	GPR19_uc001raq.2_Frame_Shift_Del_p.N370fs	NM_006143	NP_006134	Q15760	GPR19_HUMAN	G protein-coupled receptor 19	370	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		GCCAACGTAGTTTTTTTTGGC	0.398													8	197	---	---	---	---					
POLI	11201	broad.mit.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	-	-	rs140689079		TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr18:51795958_51795960delCGA	uc002lfj.3	+	1	110_112	c.42_44delCGA	c.(40-45)GGCGAC>GGC	p.D17del	POLI_uc010xds.1_In_Frame_Del_p.D17del|POLI_uc002lfk.3_5'UTR|POLI_uc002lfl.1_5'Flank	NM_007195	NP_009126	Q9UNA4	POLI_HUMAN	DNA polymerase iota	17					DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding			ovary(2)|kidney(1)	3				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		AAGGCGGCGGCGACGACGACGAG	0.729								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					3	4	---	---	---	---					
ASXL2	55252	broad.mit.edu	37	2	25973090	25973094	+	Frame_Shift_Del	DEL	TTCTT	-	-			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	g.chr2:25973090_25973094delTTCTT	uc002rgs.2	-	11	1552_1556	c.1331_1335delAAGAA	c.(1330-1335)AAAGAAfs	p.K444fs	ASXL2_uc002rgt.1_Frame_Shift_Del_p.K184fs	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	444_445					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTCACACTCTTCTTTTCTGCCTGG	0.473													9	376	---	---	---	---					
