Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF11	440560	broad.mit.edu	37	1	12887612	12887612	+	Missense_Mutation	SNP	T	C	C	rs60558629		TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr1:12887612T>C	uc001auk.2	-	3	441	c.245A>G	c.(244-246)CAT>CGT	p.H82R		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	82											0						GAAGCACCCATGGGCCATAGC	0.488000													6	262					0	0	1	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946437	16946437	+	RNA	SNP	C	T	T	rs2262202		TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr1:16946437C>T	uc010ocf.1	-	3		c.461G>A			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCCTTCCGCCGGGCCAGCAG	0.672000													8	39					0	0	1	0	0
KIAA0907	22889	broad.mit.edu	37	1	155887399	155887399	+	Missense_Mutation	SNP	T	G	G			TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr1:155887399T>G	uc001fmi.1	-	11	1355	c.1331A>C	c.(1330-1332)CAG>CCG	p.Q444P	KIAA0907_uc001fmj.1_Missense_Mutation_p.Q444P|KIAA0907_uc009wrk.1_Missense_Mutation_p.Q301P|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	444	Pro-rich.										0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			gggctggggctggggGCCAGC	0.443000													9	37					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19419995	19419995	+	RNA	SNP	C	G	G	rs78291036	by1000genomes	TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr13:19419995C>G	uc010tcj.1	-	1		c.26115G>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GAACTAAGAACAGTTAGATAA	0.294000													3	32					0	0	1	0	0
POU4F1	5457	broad.mit.edu	37	13	79175754	79175754	+	Silent	SNP	G	T	T			TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr13:79175754G>T	uc001vkv.2	-	2	1290	c.1056C>A	c.(1054-1056)GGC>GGA	p.G352G	uc001vku.1_Intron	NM_006237	NP_006228	Q01851	PO4F1_HUMAN	POU domain, class 4, transcription factor 1	352					axonogenesis|regulation of transcription from RNA polymerase II promoter|synapse assembly	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.129)		TCTTCTCGCCGCCGTTGAAGA	0.652000													5	30					0.000602214	0.000602214	1	1	0
ZNF14	7561	broad.mit.edu	37	19	19822190	19822190	+	Missense_Mutation	SNP	C	G	G			TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr19:19822190C>G	uc002nnk.1	-	4	2054	c.1900G>C	c.(1900-1902)GAA>CAA	p.E634Q		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	634	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				TGAGTCCTTTCATGCAGTCGA	0.403000													3	57					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29625875	29625875	+	Missense_Mutation	SNP	T	C	C	rs143761036	by1000genomes	TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr20:29625875T>C	uc010ztl.1	+	2	61	c.29T>C	c.(28-30)ATC>ACC	p.I10T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGTACAGAATCGCCCTGAAA	0.353000													4	58					0	0	1	0	0
RPN2	6185	broad.mit.edu	37	20	35812668	35812668	+	Silent	SNP	C	T	T	rs62206558		TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr20:35812668C>T	uc002xgp.2	+	2	403	c.99C>T	c.(97-99)GAC>GAT	p.D33D	RPN2_uc002xgo.3_Silent_p.D33D|RPN2_uc010gfw.2_Translation_Start_Site|RPN2_uc002xgq.2_Silent_p.D33D	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	33	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CCAAGCATGACGTGGAGAGAC	0.547000													5	132					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	18845939	18845939	+	RNA	SNP	G	A	A	rs117961252	by1000genomes	TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr22:18845939G>A	uc002zoe.2	+	5		c.2301G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TGCCTGGGCCGTGGAGCACTC	0.483000													4	27					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482147	140482147	+	Missense_Mutation	SNP	C	G	G	rs144773246	byFrequency	TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr5:140482147C>G	uc003lio.2	+	1	1914	c.1914C>G	c.(1912-1914)CAC>CAG	p.H638Q	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	638	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGCCAAGCACAGGCTGGTGG	0.697000													3	76					0	0	1	0	0
FAM71B	153745	broad.mit.edu	37	5	156589827	156589827	+	Silent	SNP	T	C	C			TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr5:156589827T>C	uc003lwn.2	-	2	1549	c.1449A>G	c.(1447-1449)AAA>AAG	p.K483K		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	483						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGCTGTACCCTTTTTCTTTTT	0.532000													3	132					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349878	100349878	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr7:100349878C>T	uc003uwj.2	+	14	2315	c.2150C>T	c.(2149-2151)CCC>CTC	p.P717L	ZAN_uc003uwk.2_Missense_Mutation_p.P717L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	717	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCAGAAAAACCCACCATCCCC	0.507000													3	75					0	0	1	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	-	-	rs149280379		TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr1:150530506delG	uc001eux.2	+	14	2499	c.2263delG	c.(2263-2265)GGGfs	p.G755fs	ADAMTSL4_uc001euw.2_Frame_Shift_Del_p.G755fs|ADAMTSL4_uc009wlw.2_Frame_Shift_Del_p.G778fs|ADAMTSL4_uc010pcg.1_Frame_Shift_Del_p.G716fs|ADAMTSL4_uc009wlx.2_5'UTR	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	755	TSP type-1 2.				apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GCAGGAATTTGGGGGGGGTGG	0.692													7	249	---	---	---	---					
LILRB1	10859	broad.mit.edu	37	19	55146148	55146150	+	In_Frame_Del	DEL	CTC	-	-			TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr19:55146148_55146150delCTC	uc002qgj.2	+	11	1757_1759	c.1417_1419delCTC	c.(1417-1419)CTCdel	p.L479del	LILRB1_uc010erp.1_In_Frame_Del_p.L94del|LILRB1_uc002qgl.2_In_Frame_Del_p.L479del|LILRB1_uc002qgk.2_In_Frame_Del_p.L480del|LILRB1_uc002qgm.2_In_Frame_Del_p.L480del|LILRB1_uc010erq.2_In_Frame_Del_p.L463del|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	479	Helical; (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity	p.L479del(1)		large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CAtcctactgctcctcctcctcc	0.458										HNSCC(37;0.09)			7	99	---	---	---	---					
GIGYF1	64599	broad.mit.edu	37	7	100280978	100280980	+	In_Frame_Del	DEL	CTG	-	-			TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chr7:100280978_100280980delCTG	uc003uwg.1	-	18	3149_3151	c.2140_2142delCAG	c.(2140-2142)CAGdel	p.Q714del		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	714										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					TCTGCTCCTCCTGCTGCTGCTGG	0.650													8	269	---	---	---	---					
KLHL34	257240	broad.mit.edu	37	X	21674920	21674922	+	In_Frame_Del	DEL	CTC	-	-			TCGA-FG-8181-01A-11D-2253-08	TCGA-FG-8181-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	9e783a0c-6e1a-42a7-9356-19a047593814	e2aa9ddd-903d-4888-95a7-63467ac504af	g.chrX:21674920_21674922delCTC	uc004czz.1	-	1	1527_1529	c.985_987delGAG	c.(985-987)GAGdel	p.E329del		NM_153270	NP_695002	Q8N239	KLH34_HUMAN	kelch-like 34	329	Kelch 1.|Glu-rich.									ovary(1)	1						TGAGCTCCCActcctcctcctcc	0.527													3	6	---	---	---	---					
