Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NES	10763	broad.mit.edu	37	1	156642351	156642351	+	Silent	SNP	T	C	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr1:156642351T>C	uc001fpq.2	-	4	1762	c.1629A>G	c.(1627-1629)AAA>AAG	p.K543K		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	543	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCAGGGTTTCTTTTTCCAAAG	0.468000													5	38					0	0	0.001168	0	0
OR2C3	81472	broad.mit.edu	37	1	247695072	247695072	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr1:247695072C>T	uc009xgy.2	-	2	1104	c.742G>A	c.(742-744)GTG>ATG	p.V248M	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AGAGACACCACAGCCACGTGG	0.542000													39	78					0	0	0.013114	0	0
FBXO18	84893	broad.mit.edu	37	10	5979128	5979128	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr10:5979128G>A	uc001iis.2	+	21	3112	c.3017G>A	c.(3016-3018)CGC>CAC	p.R1006H	FBXO18_uc001iir.2_Missense_Mutation_p.R949H|FBXO18_uc009xig.2_Missense_Mutation_p.R932H|FBXO18_uc001iit.2_Missense_Mutation_p.R1057H	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	1006					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						GCGGAGCAGCGCATCGGGCCC	0.622000													12	27					0	0	0.013537	0	0
FGFR2	2263	broad.mit.edu	37	10	123256167	123256167	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr10:123256167G>T	uc010qtk.1	-	14	2389	c.1742C>A	c.(1741-1743)CCA>CAA	p.P581Q	FGFR2_uc010qtg.1_Missense_Mutation_p.P469Q|FGFR2_uc010qth.1_Missense_Mutation_p.P466Q|FGFR2_uc010qti.1_Missense_Mutation_p.P492Q|FGFR2_uc010qtj.1_Missense_Mutation_p.P582Q|FGFR2_uc010qtl.1_Missense_Mutation_p.P465Q|FGFR2_uc010qtm.1_Missense_Mutation_p.P464Q|FGFR2_uc001lfl.3_Missense_Mutation_p.P582Q|FGFR2_uc001lfm.2_Missense_Mutation_p.P493Q|FGFR2_uc001lfg.3_Missense_Mutation_p.P189Q	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	581	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	CATCCCGGGTGGCCTCCGGGC	0.532000		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				57	73					9.16383e-17	9.38734e-17	0.014410	1	0
MUC5B	727897	broad.mit.edu	37	11	1270916	1270916	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr11:1270916C>T	uc009ycr.1	+	51	14351	c.14225C>T	c.(14224-14226)CCG>CTG	p.P4742L	MUC5B_uc001ltb.2_Missense_Mutation_p.P4272L	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4269	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACGGCCACCCCGTCCTCCACC	0.642000													42	162					0	0	0.014410	0	0
SAA4	6291	broad.mit.edu	37	11	18253209	18253209	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr11:18253209C>T	uc001mny.2	-	4	329	c.233G>A	c.(232-234)CGT>CAT	p.R78H		NM_006512	NP_006503	P35542	SAA4_HUMAN	serum amyloid A4, constitutive precursor	78					acute-phase response	high-density lipoprotein particle					0						GACCCTGGAACGGCTGCAACC	0.488000													16	31					0	0	0.007413	0	0
OR5A1	219982	broad.mit.edu	37	11	59211422	59211422	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr11:59211422G>A	uc001nnx.1	+	1	781	c.781G>A	c.(781-783)GTG>ATG	p.V261M		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	261	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						AGCCCTTTTCGTGTACTTGCG	0.537000													100	144					0	0	0.014410	0	0
SUV420H1	51111	broad.mit.edu	37	11	67941292	67941292	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr11:67941292T>C	uc001onm.1	-	6	888	c.632A>G	c.(631-633)AAA>AGA	p.K211R	SUV420H1_uc009yse.1_5'UTR|SUV420H1_uc001onn.1_Missense_Mutation_p.K39R|SUV420H1_uc009ysf.2_5'UTR|SUV420H1_uc001ono.1_Missense_Mutation_p.K211R|SUV420H1_uc001onp.2_Missense_Mutation_p.K211R|SUV420H1_uc010rqa.1_Missense_Mutation_p.K188R|SUV420H1_uc001onq.2_Missense_Mutation_p.K211R	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	211	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						TGCAACTATTTTGGCTCCATT	0.299000													6	63					0	0	0.001168	0	0
SAPS3	55291	broad.mit.edu	37	11	68337357	68337357	+	Silent	SNP	T	C	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr11:68337357T>C	uc001onw.2	+	11	1537	c.1270T>C	c.(1270-1272)TTA>CTA	p.L424L	SAPS3_uc001onv.2_Silent_p.L424L|SAPS3_uc001ony.3_Silent_p.L424L|SAPS3_uc001onx.2_Silent_p.L424L|SAPS3_uc009ysh.2_Silent_p.L373L|SAPS3_uc001onu.2_Silent_p.L373L|SAPS3_uc010rqc.1_Silent_p.L192L|SAPS3_uc010rqd.1_Silent_p.L136L	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	424					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			TAATTTGTTATTAAAACATGT	0.373000													64	77					0	0	0.014410	0	0
OR10G8	219869	broad.mit.edu	37	11	123901193	123901193	+	Silent	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr11:123901193C>T	uc001pzp.1	+	1	864	c.864C>T	c.(862-864)ACC>ACT	p.T288T		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TTGTGTACACCCTGAGGAACA	0.413000													7	77					0	0	0.003080	0	0
NAV3	89795	broad.mit.edu	37	12	78591057	78591057	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr12:78591057G>A	uc001syp.2	+	35	6495	c.6322G>A	c.(6322-6324)GAA>AAA	p.E2108K	NAV3_uc001syo.2_Missense_Mutation_p.E2086K|NAV3_uc010sub.1_Missense_Mutation_p.E1565K|NAV3_uc009zsf.2_Missense_Mutation_p.E917K	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2108						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TAACCTGGCTGAACAGTGCAG	0.338000										HNSCC(70;0.22)			3	43					0	0	0.004672	0	0
OR11H12	440153	broad.mit.edu	37	14	19378047	19378047	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr14:19378047A>G	uc010tkp.1	+	1	454	c.454A>G	c.(454-456)ACT>GCT	p.T152A		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	152	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TAATATCATGACTGGGCATCT	0.473000													10	365					0	0	0.008740	0	0
DISP2	85455	broad.mit.edu	37	15	40656656	40656656	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr15:40656656G>A	uc001zlk.1	+	4	603	c.514G>A	c.(514-516)GTG>ATG	p.V172M		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	172	Helical; (Potential).				smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		GCCAGTGGCCGTGCTGATGCT	0.602000													4	139					0	0	0.009096	0	0
SHBG	6462	broad.mit.edu	37	17	7535330	7535330	+	Silent	SNP	T	C	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr17:7535330T>C	uc002gie.2	+	6	887	c.849T>C	c.(847-849)GAT>GAC	p.D283D	SHBG_uc010cmo.2_Silent_p.D171D|SHBG_uc010cmp.2_Intron|SHBG_uc010cmq.2_Silent_p.D171D|SHBG_uc010cmr.2_Intron|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Silent_p.D225D|SHBG_uc010cmu.2_Silent_p.D225D|SHBG_uc010cmz.2_Intron|SHBG_uc010cmv.2_Silent_p.D171D|SHBG_uc010cmw.2_Intron|SHBG_uc010cmx.2_Intron|SHBG_uc010cmy.2_Silent_p.D225D|SHBG_uc002gid.3_Silent_p.D225D|SHBG_uc010cnd.2_Intron|SHBG_uc010cna.2_Intron|SHBG_uc010vue.1_Silent_p.D265D|SHBG_uc010vuf.1_Silent_p.D283D|SHBG_uc010cnb.2_Intron|SHBG_uc010cnc.2_Silent_p.D229D	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	283	Laminin G-like 2.				hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.0?(1)|p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	ACCTCCAAGATCAAGTAAAGG	0.542000													21	120					0	0	0.010504	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16852148	16852148	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr17:16852148C>T	uc002gqs.1	-	3	362	c.349G>A	c.(349-351)GAG>AAG	p.E117K	TNFRSF13B_uc010vwt.1_RNA|TNFRSF13B_uc002gqt.1_Missense_Mutation_p.E71K|TNFRSF13B_uc010vwu.1_Missense_Mutation_p.E117K	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	117	Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						CTCCTGAGCTCTGGTGGAAGG	0.522000									IgA_Deficiency_Selective				71	105					0	0	0.014410	0	0
OR7D2	162998	broad.mit.edu	37	19	9296887	9296887	+	Silent	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr19:9296887C>T	uc002mkz.1	+	1	618	c.430C>T	c.(430-432)CTG>TTG	p.L144L		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	144	Helical; Name=4; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CTGTGGCCTCCTGGTTTTTGT	0.478000													19	187					0	0	0.008871	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10224314	10224314	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr19:10224314A>T	uc002mna.2	+	13	1285	c.1285A>T	c.(1285-1287)AAG>TAG	p.K429*	PPAN-P2RY11_uc010xla.1_Silent_p.P449P|P2RY11_uc002mnc.2_Nonsense_Mutation_p.K9*	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			CACAGGTGCCAAGTCCTGCCC	0.617000											OREG0025230	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	23					0	0	0.003163	0	0
FDX1L	112812	broad.mit.edu	37	19	10421614	10421614	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr19:10421614C>T	uc002mny.1	-	4	329	c.310G>A	c.(310-312)GCC>ACC	p.A104T	ZGLP1_uc002mnw.3_5'Flank|FDX1L_uc002mnx.1_RNA	NM_001031734	NP_001026904	Q6P4F2	ADXL_HUMAN	ferredoxin 1-like precursor	104	2Fe-2S ferredoxin-type.				electron transport chain|transport	mitochondrial matrix	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(20;9.5e-10)|Epithelial(33;2.11e-06)|all cancers(31;5.06e-06)			GCTTCACAGGCCCCTAGGGGT	0.617000													8	38					0	0	0.003080	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								16	52					0	0	0.007413	0	0
SLC4A11	83959	broad.mit.edu	37	20	3209830	3209830	+	Silent	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr20:3209830G>A	uc002wig.2	-	15	2025	c.1977C>T	c.(1975-1977)AGC>AGT	p.S659S	SLC4A11_uc010zqe.1_Silent_p.S686S|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.S643S	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	659	Helical; (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						CCATGGCACCGCTGACGGCCC	0.617000													6	58					0	0	0.003080	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18168088	18168088	+	Silent	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr20:18168088G>A	uc002wqj.2	+	11	2956	c.2334G>A	c.(2332-2334)CTG>CTA	p.L778L	CSRP2BP_uc002wqk.2_Silent_p.L650L|CSRP2BP_uc010zru.1_Silent_p.L649L	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	778	N-acetyltransferase.				histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						CATTCTTTCTGAGGCTCCGGC	0.413000													49	60					0	0	0.014410	0	0
FOXA2	3170	broad.mit.edu	37	20	22562677	22562677	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr20:22562677G>C	uc002wsn.2	-	3	1375	c.1185C>G	c.(1183-1185)CAC>CAG	p.H395Q	FOXA2_uc002wsm.2_Missense_Mutation_p.H401Q	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	395	Transactivation domain 2 (By similarity).				cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					TGTGGGGTtggtggtggtggt	0.527000													3	37					0	0	0.004672	0	0
FRG1B	284802	broad.mit.edu	37	20	29614323	29614323	+	Translation_Start_Site	SNP	C	T	T	rs62197050	by1000genomes	TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr20:29614323C>T	uc010ztk.1	+	1	63	c.-10C>T	c.(-12--8)TACGT>TATGT		FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA					RecName: Full=Protein FRG1B;												0						CAGCTTGATACGTTGGTGAGT	0.219000													4	15					0	0	0.009096	0	0
FRG1B	284802	broad.mit.edu	37	20	29625934	29625934	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr20:29625934C>T	uc010ztl.1	+	2	120	c.88C>T	c.(88-90)CAT>TAT	p.H30Y	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ACTTGTTGGGCATTCAGATGC	0.338000													6	67					0	0	0.003080	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299000													3	19					0	0	0.009096	0	0
SLC5A3	6526	broad.mit.edu	37	21	35468232	35468232	+	Silent	SNP	A	G	G			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr21:35468232A>G	uc002yto.2	+	2	1247	c.735A>G	c.(733-735)AAA>AAG	p.K245K	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	245	Cytoplasmic (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						CCCCTAAGAAAGAAGCCCTGA	0.453000													49	74					0	0	0.014410	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659734	24659734	+	RNA	SNP	T	C	C			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr22:24659734T>C	uc002zzs.3	+	7		c.3466T>C			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CTCTCTCCTGTGGGAGGGGGG	0.632000													3	14					0	0	0.000602	0	0
PIK3CA	5290	broad.mit.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr3:178936095A>G	uc003fjk.2	+	10	1794	c.1637A>G	c.(1636-1638)CAG>CGG	p.Q546R		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	546	PI3K helical.		Q -> K (in cancer).|Q -> P (in cancer).|Q -> E (in cancer).|Q -> R (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.Q546K(54)|p.Q546R(17)|p.Q546P(10)|p.Q546E(9)|p.Q546L(6)|p.Q546H(4)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			ATCACTGAGCAGGAGAAAGAT	0.363000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			13	31					0	0	0.002450	0	0
BNIP1	662	broad.mit.edu	37	5	172587005	172587005	+	Silent	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr5:172587005G>A	uc003mcj.3	+	5	545	c.441G>A	c.(439-441)AGG>AGA	p.R147R	BNIP1_uc003mci.3_Silent_p.R190R|BNIP1_uc003mck.3_Silent_p.R156R|BNIP1_uc003mcl.3_Silent_p.R113R	NM_001205	NP_001196	Q12981	SEC20_HUMAN	BCL2/adenovirus E1B 19kD interacting protein 1	147	Cytoplasmic (Potential).				anti-apoptosis|apoptosis|endoplasmic reticulum membrane fusion|endoplasmic reticulum organization|induction of apoptosis|vesicle-mediated transport	integral to endoplasmic reticulum membrane|nuclear envelope|SNARE complex	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GGATCAGCAGGATGATGGCCC	0.562000													84	118					0	0	0.014410	0	0
MAGI2	9863	broad.mit.edu	37	7	77885556	77885556	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr7:77885556G>A	uc003ugx.2	-	10	2005	c.1751C>T	c.(1750-1752)CCG>CTG	p.P584L	MAGI2_uc003ugy.2_Missense_Mutation_p.P584L|MAGI2_uc010ldx.1_Missense_Mutation_p.P193L|MAGI2_uc010ldy.1_Missense_Mutation_p.P193L|MAGI2_uc011kgr.1_Missense_Mutation_p.P416L|MAGI2_uc011kgs.1_Missense_Mutation_p.P421L	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	584						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				ATGGACGGGCGGTGGATACGT	0.527000													3	54					0	0	0.004672	0	0
BAI1	575	broad.mit.edu	37	8	143623472	143623472	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr8:143623472C>T	uc003ywm.2	+	27	4060	c.3877C>T	c.(3877-3879)CGC>TGC	p.R1293C		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1293	Cytoplasmic (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CGGCTCACCCCGCTATCCCGG	0.652000													3	32					0	0	0.009096	0	0
C9orf79	286234	broad.mit.edu	37	9	90501843	90501843	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr9:90501843G>A	uc004app.3	+	4	2476	c.2441G>A	c.(2440-2442)GGG>GAG	p.G814E	C9orf79_uc004apo.1_Missense_Mutation_p.G626E	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	814						integral to membrane				ovary(3)	3						TGGAGGGGTGGGAAAGCCCAC	0.572000													22	18					0	0	0.014323	0	0
MST1P2	11209	broad.mit.edu	37	1	16975913	16975918	+	RNA	DEL	CCTGTT	-	-			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr1:16975913_16975918delCCTGTT	uc010och.1	+	11		c.1935_1940delCCTGTT			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GGTTGGGCACCCTGTTCCAGAACCCA	0.578													10	4	---	---	---	---					
OR4A15	81328	broad.mit.edu	37	11	55136117	55136118	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr11:55136117_55136118delTT	uc010rif.1	+	1	758_759	c.758_759delTT	c.(757-759)CTTfs	p.L253fs		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	253	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTACACTCTCTTAAGACTCAGA	0.436													7	80	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	17229222	17229223	+	RNA	DEL	CC	-	-			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr22:17229222_17229223delCC	uc002zlu.2	-	1		c.106_107delGG								Homo sapiens cDNA clone IMAGE:3920443, partial cds.																		tccccggactccgtctgctgtt	0.000													3	5	---	---	---	---					
PTX3	5806	broad.mit.edu	37	3	157154729	157154731	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr3:157154729_157154731delCTC	uc003fbl.3	+	1	150_152	c.7_9delCTC	c.(7-9)CTCdel	p.L4del	VEPH1_uc003fbj.1_Intron|VEPH1_uc003fbk.1_Intron|VEPH1_uc010hvu.1_Intron	NM_002852	NP_002843	P26022	PTX3_HUMAN	pentraxin 3 precursor	4					inflammatory response	extracellular region				central_nervous_system(1)	1			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			AGCAATGCATCTCCTTGCGATTC	0.493													64	97	---	---	---	---					
SH3RF1	57630	broad.mit.edu	37	4	170017683	170017690	+	Frame_Shift_Del	DEL	ACAAAGCT	-	-			TCGA-HT-7692-01A-12D-2253-08	TCGA-HT-7692-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	eaa6dbfa-6641-4162-a34d-6718781793bc	4a5299fe-a61f-4e0d-9e89-bc7874cff10e	g.chr4:170017683_170017690delACAAAGCT	uc003isa.1	-	12	2982_2989	c.2647_2654delAGCTTTGT	c.(2647-2655)AGCTTTGTGfs	p.S883fs		NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	883_885	SH3 4.					Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		TATGTTTTCCACAAAGCTTCCTGGGAAA	0.389													9	77	---	---	---	---					
