Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SEPN1	57190	broad.mit.edu	36	1	26000121	26000121	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	26000121	26000121	SEPN1	1	G	G	T	41
ATXN7L2	127002	broad.mit.edu	36	1	109831160	109831160	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	109831160	109831160	ATXN7L2	1	C	C	T	17
ANKRD35	148741	broad.mit.edu	36	1	144274409	144274409	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	144274409	144274409	ANKRD35	1	G	G	A	33
S100A6	6277	broad.mit.edu	36	1	151774380	151774380	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	151774380	151774380	S100A6	1	G	G	T	39
RHBG	57127	broad.mit.edu	36	1	154618297	154618297	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	154618297	154618297	RHBG	1	G	G	T	43
NES	10763	broad.mit.edu	36	1	154911706	154911706	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	154911706	154911706	NES	1	G	G	T	37
INSRR	3645	broad.mit.edu	36	1	155090215	155090215	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	155090215	155090215	INSRR	1	C	C	A	28
RABGAP1L	9910	broad.mit.edu	36	1	172456750	172456750	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	172456750	172456750	RABGAP1L	1	T	T	G	51
CENPF	1063	broad.mit.edu	36	1	212879925	212879925	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	212879925	212879925	CENPF	1	C	C	T	29
RAB3GAP2	25782	broad.mit.edu	36	1	218404757	218404757	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	218404757	218404757	RAB3GAP2	1	C	C	T	19
OR2M2	391194	broad.mit.edu	36	1	246409972	246409972	+	Missense_Mutation	SNP	G	G	A	rs34678055	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	246409972	246409972	OR2M2	1	G	G	A	34
ZEB1	6935	broad.mit.edu	36	10	31849766	31849766	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31849766	31849766	ZEB1	10	T	T	C	53
OR10A5	144124	broad.mit.edu	36	11	6824073	6824073	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6824073	6824073	OR10A5	11	T	T	A	55
MED19	219541	broad.mit.edu	36	11	57228832	57228832	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57228832	57228832	MED19	11	T	T	A	55
ZFP91	80829	broad.mit.edu	36	11	58141539	58141539	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58141539	58141539	ZFP91	11	G	G	C	47
PELI3	246330	broad.mit.edu	36	11	65999994	65999994	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65999994	65999994	PELI3	11	G	G	C	47
USP2	9099	broad.mit.edu	36	11	118735051	118735051	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	118735051	118735051	USP2	11	C	C	G	28
ATF7IP	55729	broad.mit.edu	36	12	14468581	14468581	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	14468581	14468581	ATF7IP	12	C	C	A	24
ABCC9	10060	broad.mit.edu	36	12	21978114	21978114	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	21978114	21978114	ABCC9	12	G	G	A	42
SLC38A1	81539	broad.mit.edu	36	12	44887277	44887277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44887277	44887277	SLC38A1	12	C	C	T	28
C14orf43	91748	broad.mit.edu	36	14	73275501	73275501	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73275501	73275501	C14orf43	14	G	G	A	38
DLK1	8788	broad.mit.edu	36	14	100270317	100270317	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	100270317	100270317	DLK1	14	C	C	T	28
C15orf55	256646	broad.mit.edu	36	15	32436004	32436004	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	32436004	32436004	C15orf55	15	G	G	T	35
PLCB2	5330	broad.mit.edu	36	15	38381454	38381454	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38381454	38381454	PLCB2	15	C	C	T	26
LTK	4058	broad.mit.edu	36	15	39583588	39583588	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39583588	39583588	LTK	15	C	C	G	22
ZWILCH	55055	broad.mit.edu	36	15	64603096	64603096	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	64603096	64603096	ZWILCH	15	A	A	G	7
CASKIN1	57524	broad.mit.edu	36	16	2179082	2179082	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2179082	2179082	CASKIN1	16	G	G	C	40
XYLT1	64131	broad.mit.edu	36	16	17199622	17199622	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17199622	17199622	XYLT1	16	C	C	T	31
HYDIN	54768	broad.mit.edu	36	16	69512218	69512218	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69512218	69512218	HYDIN	16	G	G	A	40
COL1A1	1277	broad.mit.edu	36	17	45627423	45627423	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45627423	45627423	COL1A1	17	C	C	G	18
INSR	3643	broad.mit.edu	36	19	7076412	7076412	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7076412	7076412	INSR	19	T	T	A	56
FBXW9	84261	broad.mit.edu	36	19	12661620	12661620	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	12661620	12661620	FBXW9	19	C	C	G	25
ZNF565	147929	broad.mit.edu	36	19	41365855	41365855	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41365855	41365855	ZNF565	19	C	C	T	21
POLD1	5424	broad.mit.edu	36	19	55612996	55612996	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55612996	55612996	POLD1	19	C	C	G	22
BIRC6	57448	broad.mit.edu	36	2	32470676	32470676	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	32470676	32470676	BIRC6	2	G	G	C	35
USP34	9736	broad.mit.edu	36	2	61460976	61460976	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61460976	61460976	USP34	2	C	C	G	24
SPRED2	200734	broad.mit.edu	36	2	65425505	65425505	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65425505	65425505	SPRED2	2	A	A	T	6
ELMOD3	84173	broad.mit.edu	36	2	85452122	85452122	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	85452122	85452122	ELMOD3	2	T	T	A	50
POTEF	728378	broad.mit.edu	36	2	130594259	130594259	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	130594259	130594259	POTEF	2	C	C	A	20
TTN	7273	broad.mit.edu	36	2	179330634	179330634	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179330634	179330634	TTN	2	C	C	A	24
PAX3	5077	broad.mit.edu	36	2	222793186	222793186	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	222793186	222793186	PAX3	2	A	A	C	9
CEP250	11190	broad.mit.edu	36	20	33549214	33549214	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33549214	33549214	CEP250	20	T	T	C	54
KCNG1	3755	broad.mit.edu	36	20	49060031	49060031	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49060031	49060031	KCNG1	20	G	G	T	41
MST1R	4486	broad.mit.edu	36	3	49908185	49908185	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	49908185	49908185	MST1R	3	C	C	A	18
NISCH	11188	broad.mit.edu	36	3	52499841	52499841	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52499841	52499841	NISCH	3	C	C	A	24
COL6A6	131873	broad.mit.edu	36	3	131850964	131850964	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	131850964	131850964	COL6A6	3	C	C	T	21
C4orf35	85438	broad.mit.edu	36	4	71235661	71235661	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71235661	71235661	C4orf35	4	A	A	G	8
MAP9	79884	broad.mit.edu	36	4	156500847	156500847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	156500847	156500847	MAP9	4	C	C	A	29
MYO10	4651	broad.mit.edu	36	5	16754433	16754433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16754433	16754433	MYO10	5	C	C	T	23
CMYA5	202333	broad.mit.edu	36	5	79069609	79069609	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	79069609	79069609	CMYA5	5	G	G	T	33
LNPEP	4012	broad.mit.edu	36	5	96340696	96340696	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	96340696	96340696	LNPEP	5	G	G	T	33
CUL7	9820	broad.mit.edu	36	6	43125345	43125345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43125345	43125345	CUL7	6	C	C	T	19
KHDRBS2	202559	broad.mit.edu	36	6	62662622	62662622	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	62662622	62662622	KHDRBS2	6	G	G	C	43
ROS1	6098	broad.mit.edu	36	6	117771957	117771957	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	117771957	117771957	ROS1	6	T	T	C	61
GRM1	2911	broad.mit.edu	36	6	146393018	146393018	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	146393018	146393018	GRM1	6	G	G	T	41
ABCB5	340273	broad.mit.edu	36	7	20733216	20733216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20733216	20733216	ABCB5	7	G	G	A	40
MYO1G	64005	broad.mit.edu	36	7	44983057	44983057	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	44983057	44983057	MYO1G	7	G	G	C	33
C7orf64	84060	broad.mit.edu	36	7	92002185	92002185	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	92002185	92002185	C7orf64	7	A	A	G	14
HEPACAM2	253012	broad.mit.edu	36	7	92682755	92682755	+	Missense_Mutation	SNP	G	G	C	rs35608547	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	92682755	92682755	HEPACAM2	7	G	G	C	35
AHCYL2	23382	broad.mit.edu	36	7	128827403	128827403	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128827403	128827403	AHCYL2	7	A	A	G	12
EYA1	2138	broad.mit.edu	36	8	72429579	72429579	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72429579	72429579	EYA1	8	C	C	T	26
TG	7038	broad.mit.edu	36	8	134103563	134103563	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	134103563	134103563	TG	8	G	G	T	42
ADAMTSL1	92949	broad.mit.edu	36	9	18767219	18767219	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18767219	18767219	ADAMTSL1	9	C	C	A	21
TBX22	50945	broad.mit.edu	36	X	79167900	79167900	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	79167900	79167900	TBX22	23	C	C	A	20
TP53	7157	broad.mit.edu	36	17	7518291	7518292	+	Frame_Shift_Ins	INS	-	A	-	novel	Unknown	TCGA-13-0883-01	TCGA-13-0883-10			A	-	-	-	Unknown	Valid	Somatic	Phase_I	Capture				Illumina GAIIx	Broad	Frame_Shift_Ins	INS	7518291	7518292	TP53	17	-	A	-	61
