Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
WASH1	375690	genome.wustl.edu	36	9	4863	4863	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	4863	4863	WASH1	9	A	A	G	1
BTBD2	55643	genome.wustl.edu	36	19	1948416	1948416	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	1948416	1948416	BTBD2	19	C	T	T	23
GLIS3	169792	genome.wustl.edu	36	9	3846099	3846099	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	3846099	3846099	GLIS3	9	G	G	C	41
FAM160A2	84067	genome.wustl.edu	36	11	6195620	6195620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	6195620	6195620	FAM160A2	11	C	C	T	23
FAM38B	63895	genome.wustl.edu	36	18	10681284	10681284	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	10681284	10681284	FAM38B	18	G	A	A	38
CDKN1B	1027	genome.wustl.edu	36	12	12762472	12762472	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	12762472	12762472	CDKN1B	12	A	A	G	15
BTN1A1	696	genome.wustl.edu	36	6	26610033	26610033	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	26610033	26610033	BTN1A1	6	C	C	A	27
OVCH1	341350	genome.wustl.edu	36	12	29488472	29488472	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	29488472	29488472	OVCH1	12	C	C	T	30
GPR179	440435	genome.wustl.edu	36	17	33737958	33737958	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	33737958	33737958	GPR179	17	G	G	A	35
ANKRD27	84079	genome.wustl.edu	36	19	37788636	37788636	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	37788636	37788636	ANKRD27	19	G	G	A	43
KIAA0427	9811	genome.wustl.edu	36	18	44538502	44538502	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	44538502	44538502	KIAA0427	18	G	A	A	38
ABCA13	154664	genome.wustl.edu	36	7	48288863	48288863	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48288863	48288863	ABCA13	7	G	G	T	36
PPP1R3F	89801	genome.wustl.edu	36	X	49030032	49030032	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	49030032	49030032	PPP1R3F	23	A	A	T	12
TFAP2D	83741	genome.wustl.edu	36	6	50790800	50790800	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	50790800	50790800	TFAP2D	6	G	G	A	39
ENSG00000214552		genome.wustl.edu	36	3	68276961	68276961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	68276961	68276961	ENSG00000214552	3	C	C	T	27
LHX8	431707	genome.wustl.edu	36	1	75381411	75381411	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	75381411	75381411	LHX8	1	C	C	T	32
ALPK3	57538	genome.wustl.edu	36	15	83201506	83201506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	83201506	83201506	ALPK3	15	G	G	C	35
RASSF9	9182	genome.wustl.edu	36	12	84723176	84723176	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	84723176	84723176	RASSF9	12	T	T	A	58
SYTL2	54843	genome.wustl.edu	36	11	85113990	85113990	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	85113990	85113990	SYTL2	11	C	C	T	23
SSH1	54434	genome.wustl.edu	36	12	107723085	107723085	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	107723085	107723085	SSH1	12	C	C	T	19
ATP4B	496	genome.wustl.edu	36	13	113355240	113355240	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	113355240	113355240	ATP4B	13	G	G	C	47
LRIG2	9860	genome.wustl.edu	36	1	113442849	113442849	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	113442849	113442849	LRIG2	1	G	G	A	33
BCL2L15	440603	genome.wustl.edu	36	1	114230738	114230738	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	114230738	114230738	BCL2L15	1	T	T	G	63
IGSF3	3321	genome.wustl.edu	36	1	116923808	116923808	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	G	G	G	C	G	C	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	116923808	116923808	IGSF3	1	G	G	C	40
IGSF3	3321	genome.wustl.edu	36	1	116933217	116933217	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	116933217	116933217	IGSF3	1	T	T	C	58
TMEM132B	114795	genome.wustl.edu	36	12	124701392	124701392	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	124701392	124701392	TMEM132B	12	C	C	T	31
PABPC1P2		genome.wustl.edu	36	2	147062247	147062247	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	147062247	147062247	PABPC1P2	2	T	T	C	50
CD99L2	83692	genome.wustl.edu	36	X	149689456	149689456	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01	TCGA-13-1506-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	149689456	149689456	CD99L2	23	C	C	T	19
