Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
MTOR	2475	broad.mit.edu	36	1	11241933	11241933	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	11241933	11241933	MTOR	1	C	C	A	27
ZRANB2	9406	broad.mit.edu	36	1	71305075	71305075	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	71305075	71305075	ZRANB2	1	T	T	A	56
WDR63	126820	broad.mit.edu	36	1	85311356	85311356	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	85311356	85311356	WDR63	1	G	G	C	33
PHGDH	26227	broad.mit.edu	36	1	120086007	120086007	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	120086007	120086007	PHGDH	1	G	G	A	45
ITGB1	3688	broad.mit.edu	36	10	33249239	33249239	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	33249239	33249239	ITGB1	10	G	G	A	40
PHRF1	57661	broad.mit.edu	36	11	596502	596502	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	596502	596502	PHRF1	11	G	G	T	46
MRGPRE	116534	broad.mit.edu	36	11	3206566	3206566	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3206566	3206566	MRGPRE	11	C	C	T	27
OR5F1	338674	broad.mit.edu	36	11	55518619	55518619	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55518619	55518619	OR5F1	11	G	G	A	40
STIP1	10963	broad.mit.edu	36	11	63728108	63728108	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	63728108	63728108	STIP1	11	A	A	T	13
C11orf65	160140	broad.mit.edu	36	11	107783049	107783049	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107783049	107783049	C11orf65	11	C	C	T	31
GRIK4	2900	broad.mit.edu	36	11	120281358	120281358	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	120281358	120281358	GRIK4	11	C	C	T	27
NINJ2	4815	broad.mit.edu	36	12	544825	544825	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	544825	544825	NINJ2	12	C	C	T	23
CD163L1	283316	broad.mit.edu	36	12	7422901	7422901	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	7422901	7422901	CD163L1	12	G	G	A	40
LEMD3	23592	broad.mit.edu	36	12	63849783	63849783	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	63849783	63849783	LEMD3	12	G	G	A	37
GLIPR1L2	144321	broad.mit.edu	36	12	74102998	74102998	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74102998	74102998	GLIPR1L2	12	G	G	A	37
TMEM132D	121256	broad.mit.edu	36	12	128125002	128125002	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	128125002	128125002	TMEM132D	12	G	G	A	47
C13orf23	80209	broad.mit.edu	36	13	38485390	38485390	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38485390	38485390	C13orf23	13	T	T	C	54
ANGEL1	23357	broad.mit.edu	36	14	76345445	76345445	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	76345445	76345445	ANGEL1	14	G	G	A	46
DIO3	1735	broad.mit.edu	36	14	101098050	101098050	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101098050	101098050	DIO3	14	C	C	T	27
SRL	6345	broad.mit.edu	36	16	4194548	4194548	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	4194548	4194548	SRL	16	G	G	A	39
MIB1	57534	broad.mit.edu	36	18	17649662	17649662	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17649662	17649662	MIB1	18	T	T	G	64
KCNS3	3790	broad.mit.edu	36	2	17976259	17976259	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	17976259	17976259	KCNS3	2	G	G	A	39
TTN	7273	broad.mit.edu	36	2	179349789	179349789	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	179349789	179349789	TTN	2	G	G	A	38
SULF2	55959	broad.mit.edu	36	20	45734476	45734476	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	45734476	45734476	SULF2	20	C	C	T	21
ATP9A	10079	broad.mit.edu	36	20	49657506	49657506	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49657506	49657506	ATP9A	20	A	A	C	4
EPHB1	2047	broad.mit.edu	36	3	136334264	136334264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	136334264	136334264	EPHB1	3	G	G	A	38
MFAP3L	9848	broad.mit.edu	36	4	171149977	171149977	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	171149977	171149977	MFAP3L	4	G	G	T	44
SLC6A18	348932	broad.mit.edu	36	5	1285360	1285360	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1285360	1285360	SLC6A18	5	G	G	A	38
PRDM9	56979	broad.mit.edu	36	5	23562102	23562102	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			C	G	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	23562102	23562102	PRDM9	5	C	C	G	21
ZFP57	346171	broad.mit.edu	36	6	29748583	29748583	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	29748583	29748583	ZFP57	6	G	G	A	45
C6orf27	80737	broad.mit.edu	36	6	31842069	31842069	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31842069	31842069	C6orf27	6	C	C	T	23
CENPQ	55166	broad.mit.edu	36	6	49556675	49556675	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49556675	49556675	CENPQ	6	T	T	G	64
CHN2	1124	broad.mit.edu	36	7	29513396	29513396	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29513396	29513396	CHN2	7	A	A	T	4
RSBN1L	222194	broad.mit.edu	36	7	77163736	77163736	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77163736	77163736	RSBN1L	7	C	C	T	23
TNFRSF10A	8797	broad.mit.edu	36	8	23116183	23116183	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	23116183	23116183	TNFRSF10A	8	C	C	T	23
MCART1	92014	broad.mit.edu	36	9	37878379	37878379	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	37878379	37878379	MCART1	9	G	G	A	37
PRPF4	9128	broad.mit.edu	36	9	115093655	115093655	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	115093655	115093655	PRPF4	9	T	T	A	55
COL5A1	1289	broad.mit.edu	36	9	136856317	136856317	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	136856317	136856317	COL5A1	9	G	G	A	38
TP53	7157	broad.mit.edu	36	17	7520272	7520272	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	7520272	7520272	TP53	17	G	G	-	39
CEACAM18	729767	broad.mit.edu	36	19	56675630	56675631	+	Frame_Shift_Del	DEL	AC	-	AC	novel	Unknown	TCGA-25-1329-01	TCGA-25-1329-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	56675630	56675631	CEACAM18	19	AC	-	AC	2
