Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52610568	52610568	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	8998736	8998736	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67079296	67079296	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183683279	183683279	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI1	10006	broad.mit.edu	37	10	27059961	27059961	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31415820	31415820	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT9	23597	broad.mit.edu	37	X	23723544	23723544	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACRC	93953	broad.mit.edu	37	X	70823862	70823862	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66328259	66328259	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106494338	106494338	+	RNA	SNP	C	A	A	rs1143336		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28210756	28210756	+	Splice_Site	SNP	A	G	G	rs113268450		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123016213	123016213	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRB2	154	broad.mit.edu	37	5	148206845	148206845	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147967585	147967585	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGFG2	3268	broad.mit.edu	37	7	100151829	100151829	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT2	10555	broad.mit.edu	37	9	139571431	139571431	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49962279	49962279	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117139159	117139159	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56203629	56203629	+	Missense_Mutation	SNP	C	A	A	rs144733035	byFrequency	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOTL2	51421	broad.mit.edu	37	3	134089481	134089481	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36463518	36463518	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5848490	5848490	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLF	200558	broad.mit.edu	37	2	68772346	68772346	+	Silent	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB48R	55911	broad.mit.edu	37	16	28508966	28508966	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21229324	21229324	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27284177	27284177	+	Silent	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66905852	66905852	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117024870	117024870	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124358260	124358260	+	Intron	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG16L1	55054	broad.mit.edu	37	2	234184259	234184259	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AWAT2	158835	broad.mit.edu	37	X	69261742	69261742	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT2	135152	broad.mit.edu	37	6	71665881	71665881	+	Silent	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT4	338707	broad.mit.edu	37	11	375781	375781	+	Intron	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72861510	72861510	+	Intron	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS1	582	broad.mit.edu	37	11	66297387	66297387	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBX	56987	broad.mit.edu	37	3	107517294	107517294	+	Intron	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129148663	129148663	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BGN	633	broad.mit.edu	37	X	152772496	152772496	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLMH	642	broad.mit.edu	37	17	28613820	28613820	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112999542	112999542	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPNT1	10380	broad.mit.edu	37	1	220246208	220246208	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65871802	65871802	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF3	27154	broad.mit.edu	37	6	36185671	36185671	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100608447	100608447	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A2	11118	broad.mit.edu	37	6	26368293	26368293	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103310589	103310589	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf27	219793	broad.mit.edu	37	10	72534946	72534946	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90168944	90168944	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf56	146705	broad.mit.edu	37	17	79202754	79202754	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179401537	179401537	+	Intron	SNP	G	C	C	rs148375054	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf3	57136	broad.mit.edu	37	20	24944589	24944589	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf55	343990	broad.mit.edu	37	2	99439332	99439332	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf19	51244	broad.mit.edu	37	3	14708426	14708426	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf30	152405	broad.mit.edu	37	3	118867094	118867094	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf62	375341	broad.mit.edu	37	3	49311449	49311449	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf63	23272	broad.mit.edu	37	3	56695042	56695042	+	Silent	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf136	221545	broad.mit.edu	37	6	30617599	30617599	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf139	401563	broad.mit.edu	37	9	139929387	139929387	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf64	84267	broad.mit.edu	37	9	86570614	86570614	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf86	55684	broad.mit.edu	37	9	139733631	139733631	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53753864	53753864	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1250433	1250433	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54930775	54930775	+	Splice_Site	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB2	794	broad.mit.edu	37	16	71406079	71406079	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAT	847	broad.mit.edu	37	11	34472535	34472535	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC138	165055	broad.mit.edu	37	2	109404661	109404661	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197565880	197565880	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32676433	32676433	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118701565	118701565	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB1	891	broad.mit.edu	37	5	68473356	68473356	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50057064	50057065	+	Intron	DNP	CC	AA	AA			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24537862	24537862	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64984589	64984589	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61823463	61823463	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK9	1025	broad.mit.edu	37	9	130550676	130550676	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF3	11189	broad.mit.edu	37	1	151681719	151681719	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAD	1101	broad.mit.edu	37	17	48545931	48545931	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184106429	184106429	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST13	166012	broad.mit.edu	37	3	126260868	126260869	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKMT1B	1159	broad.mit.edu	37	15	43890472	43890472	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC1	1192	broad.mit.edu	37	6	31700099	31700099	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122862287	122862287	+	Silent	SNP	C	A	A	rs115820623	byFrequency;by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT4	4850	broad.mit.edu	37	7	135099199	135099199	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTFR	1271	broad.mit.edu	37	9	34557978	34557978	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1320228	1320228	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103379284	103379284	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101749458	101749458	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105796199	105796199	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48267630	48267630	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109817711	109817711	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131274258	131274258	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29126305	29126305	+	Intron	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207644501	207644501	+	Intron	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L2	64764	broad.mit.edu	37	7	137570275	137570275	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153924991	153924991	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113237150	113237150	+	Silent	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11564973	11564973	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf23	256643	broad.mit.edu	37	X	19948084	19948084	+	Intron	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf58	254158	broad.mit.edu	37	X	23933857	23933857	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143996585	143996585	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15956966	15956966	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47859245	47859245	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197564419	197564419	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31577710	31577710	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117165060	117165060	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX15	1665	broad.mit.edu	37	4	24529723	24529723	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47981678	47981678	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMGDH	29958	broad.mit.edu	37	5	78296603	78296603	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21742411	21742411	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25470841	25470841	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129172131	129172134	+	Splice_Site	DEL	GTAA	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS2L	54920	broad.mit.edu	37	16	68104848	68104848	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19956746	19956746	+	Intron	SNP	T	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC2	80258	broad.mit.edu	37	X	44108242	44108242	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38407344	38407344	+	Intron	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184041944	184041944	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL1	1994	broad.mit.edu	37	19	8028583	8028583	+	Silent	SNP	G	A	A	rs141885519	byFrequency	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD1	953	broad.mit.edu	37	10	97471790	97471790	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132504687	132504687	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97200280	97200280	+	Intron	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI2	112479	broad.mit.edu	37	16	20808084	20808084	+	3'UTR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERMP1	79956	broad.mit.edu	37	9	5823880	5823880	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK2	55224	broad.mit.edu	37	1	204103943	204103943	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133783899	133783899	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM104B	90736	broad.mit.edu	37	X	55170121	55170121	+	3'UTR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63411180	63411180	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131A	131408	broad.mit.edu	37	3	184062523	184062523	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153A	285596	broad.mit.edu	37	5	177166083	177166083	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3C	10447	broad.mit.edu	37	7	121004158	121004158	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46D	169966	broad.mit.edu	37	X	79698296	79698296	+	Silent	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177250606	177250606	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67573547	67573547	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119402013	119402013	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43627777	43627777	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126371065	126371065	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125033892	125033892	+	Missense_Mutation	SNP	C	A	A	rs150164383	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155506940	155506940	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLRT2	23768	broad.mit.edu	37	14	86089367	86089367	+	Silent	SNP	G	T	T	rs147101710	byFrequency	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28602366	28602366	+	Silent	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240372089	240372089	+	Intron	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240635748	240635749	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK2	3607	broad.mit.edu	37	17	80544350	80544350	+	Intron	SNP	A	G	G	rs113681820		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12708257	12708257	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ1	24140	broad.mit.edu	37	X	48340130	48340131	+	Intron	DNP	GG	AT	AT			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161128527	161128527	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26513487	26513488	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP1	54332	broad.mit.edu	37	8	75276141	75276141	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GET4	51608	broad.mit.edu	37	7	931815	931815	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42990791	42990791	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117885010	117885010	+	Silent	SNP	G	A	A	rs79176106		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233613814	233613814	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLS	2744	broad.mit.edu	37	2	191785789	191785790	+	Intron	DNP	GC	AA	AA			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183942764	183942764	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155654184	155654184	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131020243	131020243	+	Intron	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH3	63906	broad.mit.edu	37	1	27223852	27223852	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25887114	25887114	+	Silent	SNP	G	T	T	rs145805452	byFrequency;by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR31	2853	broad.mit.edu	37	6	167570422	167570422	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90074751	90074751	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87406912	87406912	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7620336	7620336	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP4	23560	broad.mit.edu	37	10	1051911	1051911	+	Intron	SNP	G	T	T	rs149266066	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP4	23560	broad.mit.edu	37	10	1051913	1051913	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108638636	108638636	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHA	3030	broad.mit.edu	37	2	26438000	26438000	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHA	3030	broad.mit.edu	37	2	26455076	26455076	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240098157	240098157	+	Missense_Mutation	SNP	G	C	C	rs140596122		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37276863	37276864	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEYL	26508	broad.mit.edu	37	1	40092801	40092801	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175111225	175111225	+	Missense_Mutation	SNP	G	A	A	rs141845922		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152191409	152191409	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT57	55081	broad.mit.edu	37	3	107885748	107885748	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF5	150084	broad.mit.edu	37	21	41142768	41142768	+	Intron	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160063787	160063787	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17F	112744	broad.mit.edu	37	6	52112121	52112121	+	5'Flank	SNP	G	T	T	rs150617143	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RB	55540	broad.mit.edu	37	3	53882769	53882792	+	Intron	DEL	ACTTTTAGGAAGCCTAATATAGGC	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F9	56300	broad.mit.edu	37	2	113742394	113742394	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41729798	41729798	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234072517	234072517	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75806660	75806660	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182395302	182395302	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52824817	52824817	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5114047	5114047	+	Intron	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JHDM1D	80853	broad.mit.edu	37	7	139827167	139827167	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH2	57158	broad.mit.edu	37	20	42744351	42744351	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123987958	123987958	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163302486	163302486	+	Intron	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ12	3768	broad.mit.edu	37	17	21318895	21318895	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ12	3768	broad.mit.edu	37	17	21319622	21319622	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	122017878	122017878	+	Intron	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55961730	55961730	+	Intron	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602329	10602329	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0652	9776	broad.mit.edu	37	11	46681025	46681025	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55367262	55367262	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39880265	39880265	+	3'UTR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59919898	59919898	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1347164	1347164	+	Silent	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47307288	47307288	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30349722	30349722	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166231753	166231753	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT23	25984	broad.mit.edu	37	17	39092709	39092709	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT7	3855	broad.mit.edu	37	12	52627365	52627365	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAPTM5	7805	broad.mit.edu	37	1	31211800	31211800	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16590420	16590420	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHD	197257	broad.mit.edu	37	16	75146138	75146138	+	3'UTR	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY1	10637	broad.mit.edu	37	1	226110038	226110038	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104309040	104309040	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHPP	64077	broad.mit.edu	37	10	126301959	126301959	+	3'UTR	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX4	89884	broad.mit.edu	37	1	180243618	180243618	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153328	153328	broad.mit.edu	37	5	135186094	135186094	+	Intron	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC375190	375190	broad.mit.edu	37	2	24342625	24342625	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78211548	78211548	+	Silent	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23263543	23263543	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82188525	82188525	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40399871	40399871	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105521219	105521219	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141707940	141707940	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57604565	57604565	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52863786	52863786	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM1	57408	broad.mit.edu	37	3	54952687	54952687	+	Silent	SNP	C	A	A	rs150198745		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTA	4049	broad.mit.edu	37	6	31540518	31540518	+	5'UTR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTV1	84946	broad.mit.edu	37	6	144184467	144184467	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160661760	160661760	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2054273	2054273	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140994335	140994335	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141290894	141290894	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149638271	149638271	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K3	8491	broad.mit.edu	37	2	39481555	39481555	+	Intron	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66427830	66427830	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBNL3	55796	broad.mit.edu	37	X	131573468	131573468	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM4	4173	broad.mit.edu	37	8	48874140	48874140	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90424410	90424410	+	Silent	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151078491	151078491	+	Intron	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70347271	70347271	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12284134	12284134	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER1	57708	broad.mit.edu	37	1	67450197	67450197	+	Intron	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR300	100126297	broad.mit.edu	37	14	101507301	101507301	+	5'Flank	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP20	9313	broad.mit.edu	37	11	102449744	102449744	+	Intron	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGS	7841	broad.mit.edu	37	2	74690042	74690042	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORN5	254956	broad.mit.edu	37	9	124922138	124922138	+	5'Flank	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP3	4356	broad.mit.edu	37	17	41888164	41888164	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPRIP	23164	broad.mit.edu	37	17	16979085	16979085	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSMP	692094	broad.mit.edu	37	9	35753920	35753920	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSMP	692094	broad.mit.edu	37	9	35753979	35753979	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1H	4496	broad.mit.edu	37	16	56703776	56703776	+	5'UTR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTM1	4534	broad.mit.edu	37	X	149764895	149764895	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9068783	9068783	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113524461	113524461	+	Intron	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2678501	2678501	+	Silent	SNP	C	A	A	rs147253540		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109777613	109777613	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47438511	47438511	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2037867	2037867	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAB1	4664	broad.mit.edu	37	2	191537809	191537809	+	Intron	DEL	C	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAE1	8883	broad.mit.edu	37	16	66842900	66842900	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF1	653361	broad.mit.edu	37	7	74191729	74191729	+	Intron	SNP	C	A	A	rs148803484	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124858954	124858954	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119161837	119161837	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB2	54550	broad.mit.edu	37	16	84028311	84028311	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFXL1	152518	broad.mit.edu	37	4	47880674	47880674	+	Silent	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57111872	57111872	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56382227	56382227	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL8	55035	broad.mit.edu	37	9	95062039	95062039	+	Intron	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117696773	117696773	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32170343	32170343	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44572925	44572925	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR2	4882	broad.mit.edu	37	9	35809649	35809649	+	3'UTR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119528803	119528803	+	Intron	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2F1	7025	broad.mit.edu	37	5	92923504	92923504	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32505179	32505179	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156836592	156836592	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCB1	4924	broad.mit.edu	37	19	49409198	49409202	+	Intron	DEL	CACTC	-	-	rs71903082		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP160	23279	broad.mit.edu	37	11	47819339	47819340	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3797197	3797197	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102332727	102332727	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128699671	128699671	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131260863	131260863	+	Intron	SNP	C	A	A	rs118126816	by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247752385	247752385	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202275	248202275	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248599	20248599	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26699715	26699716	+	Intron	DNP	CC	AA	AA			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAWR	5074	broad.mit.edu	37	12	80014945	80014945	+	Missense_Mutation	SNP	G	A	A	rs147882965		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99661991	99661991	+	Silent	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140480848	140480848	+	Silent	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140734986	140734986	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140740860	140740860	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK2	5106	broad.mit.edu	37	14	24566321	24566321	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47831250	47831250	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31876892	31876892	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144874682	144874682	+	Silent	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70164389	70164389	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32000217	32000217	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKP	5214	broad.mit.edu	37	10	3167242	3167242	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGA5	5222	broad.mit.edu	37	11	61015999	61015999	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP3	93210	broad.mit.edu	37	17	37829167	37829167	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110482821	110482821	+	Intron	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131482036	131482036	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160843553	160843553	+	Intron	SNP	T	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8702951	8702951	+	Intron	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9449216	9449221	+	Splice_Site	DEL	AGGGAA	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD1	5337	broad.mit.edu	37	3	171395615	171395615	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151161073	151161073	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK4	10733	broad.mit.edu	37	4	128807324	128807324	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNMAL2	57469	broad.mit.edu	37	19	46998168	46998168	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140389626	140389626	+	Intron	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLL	27343	broad.mit.edu	37	10	103345714	103345714	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43197322	43197322	+	Intron	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19573050	19573050	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39246903	39246903	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149215860	149215860	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1E	22843	broad.mit.edu	37	17	57043078	57043078	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1G	5496	broad.mit.edu	37	2	27604518	27604518	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13L	10848	broad.mit.edu	37	19	45901299	45901299	+	Silent	SNP	G	T	T	rs35414341	byFrequency;by1000genomes	TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQBP1	10084	broad.mit.edu	37	X	48755717	48755717	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35065333	35065333	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRL	5617	broad.mit.edu	37	6	22294587	22294587	+	Intron	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93615610	93615610	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPSAP2	5636	broad.mit.edu	37	17	18832241	18832241	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP1	5725	broad.mit.edu	37	19	805446	805446	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48140834	48140834	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141745432	141745432	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8376062	8376062	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40714294	40714294	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31437374	31437374	+	Intron	SNP	T	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52323848	52323848	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB1A	5861	broad.mit.edu	37	2	65332053	65332053	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB5B	5869	broad.mit.edu	37	12	56380777	56380777	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5925559	5925559	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1B	5908	broad.mit.edu	37	12	69047944	69047944	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21944580	21944580	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARRES2	5919	broad.mit.edu	37	7	150037118	150037118	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASL11A	387496	broad.mit.edu	37	13	27845858	27845858	+	Intron	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBAK	57786	broad.mit.edu	37	7	5096852	5096852	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385643	79385643	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG4	340526	broad.mit.edu	37	X	71349706	71349706	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240975303	240975303	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOA	387	broad.mit.edu	37	3	49399951	49399951	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152298357	152298357	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130926969	130926969	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104780825	104780825	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RINL	126432	broad.mit.edu	37	19	39361733	39361733	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF31	55072	broad.mit.edu	37	14	24626765	24626765	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1L	83853	broad.mit.edu	37	5	10450234	10450234	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL31P11	641311	broad.mit.edu	37	1	161655046	161655046	+	5'Flank	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH4A	345895	broad.mit.edu	37	6	116948721	116948721	+	Intron	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38948943	38948943	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237804119	237804119	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD13	148418	broad.mit.edu	37	1	84815281	84815281	+	Intron	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD13	148418	broad.mit.edu	37	1	84815288	84815288	+	Intron	DEL	G	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18260483	18260483	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4B	6330	broad.mit.edu	37	11	118012059	118012059	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13830946	13830946	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74711046	74711046	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT5	5413	broad.mit.edu	37	22	19709133	19709133	+	Intron	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC2	347735	broad.mit.edu	37	1	31902013	31902013	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN1	94081	broad.mit.edu	37	5	174948945	174948945	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156779484	156779484	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC1	54436	broad.mit.edu	37	4	8218656	8218656	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT2	51092	broad.mit.edu	37	11	117063953	117063953	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119029581	119029581	+	Splice_Site	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128302275	128302275	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A5	64924	broad.mit.edu	37	5	68400536	68400536	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A1	206358	broad.mit.edu	37	5	150844717	150844717	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24921737	24921739	+	In_Frame_Del	DEL	CAG	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85286010	85286010	+	5'UTR	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173506244	173506244	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD7	4092	broad.mit.edu	37	18	46447669	46447669	+	3'UTR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC3	6619	broad.mit.edu	37	9	15433731	15433731	+	Intron	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25156045	25156045	+	Intron	SNP	T	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97082543	97082543	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP2	6668	broad.mit.edu	37	17	45993674	45993674	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA1	64173	broad.mit.edu	37	1	85031736	85031736	+	3'UTR	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35774179	35774179	+	Intron	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16257686	16257686	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRL	6345	broad.mit.edu	37	16	4242278	4242278	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRL	6345	broad.mit.edu	37	16	4242324	4242324	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL1	6482	broad.mit.edu	37	8	134478338	134478338	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL4	6484	broad.mit.edu	37	11	126276877	126276877	+	Silent	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107459840	107459840	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC3	246329	broad.mit.edu	37	12	57638591	57638591	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115455691	115455691	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33405957	33405957	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT14	255928	broad.mit.edu	37	1	210334260	210334260	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160027194	160027194	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBK1	29110	broad.mit.edu	37	12	64854128	64854128	+	Intron	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBPL2	387332	broad.mit.edu	37	14	55903438	55903438	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168262479	168262479	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35271147	35271147	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152058113	152058113	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121000732	121000732	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TELO2	9894	broad.mit.edu	37	16	1552867	1552867	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERF2	7014	broad.mit.edu	37	16	69402421	69402421	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50807918	50807918	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552356	43552356	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134024175	134024175	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD3	25917	broad.mit.edu	37	3	9413116	9413116	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153557721	153557721	+	Intron	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167022082	167022082	+	3'UTR	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98155769	98155769	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60694647	60694647	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM72	643236	broad.mit.edu	37	10	45430012	45430012	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68929005	68929005	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO3	23534	broad.mit.edu	37	7	128655115	128655115	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5413639	5413639	+	Intron	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2B	7155	broad.mit.edu	37	3	25668108	25668108	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113711405	113711405	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML2	79865	broad.mit.edu	37	6	41166018	41166018	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72975784	72975784	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111097166	111097166	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111195408	111195408	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73213442	73213442	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116426992	116426992	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142574906	142574906	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC32	130502	broad.mit.edu	37	2	20096878	20096878	+	Missense_Mutation	SNP	T	A	A	rs149286415		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWISTNB	221830	broad.mit.edu	37	7	19748635	19748635	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166578318	166578318	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2	55833	broad.mit.edu	37	9	33986767	33986767	+	Silent	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2W	55284	broad.mit.edu	37	8	74742537	74742537	+	Intron	SNP	T	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK1	8408	broad.mit.edu	37	12	132401465	132401465	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK3	25989	broad.mit.edu	37	15	75134867	75134867	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC119B	84747	broad.mit.edu	37	12	121154925	121154925	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229794938	229794938	+	Missense_Mutation	SNP	G	T	T	rs138399002		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP30	84749	broad.mit.edu	37	12	109523560	109523560	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23160107	23160107	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78187617	78187617	+	Intron	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	9002396	9002396	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446286	107446286	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37233428	37233428	+	IGR	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	35882634	35882634	+	IGR	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	64011615	64011616	+	IGR	DEL	TG	-	-	rs150253900		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111590428	111590428	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45331870	45331870	+	IGR	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33006550	33006550	+	IGR	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33021035	33021035	+	IGR	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33396085	33396085	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33498074	33498074	+	IGR	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57492265	57492265	+	IGR	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23695205	23695205	+	IGR	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	109647110	109647110	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120009797	120009797	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121484110	121484110	+	IGR	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121484953	121484953	+	IGR	SNP	T	C	C	rs28833491		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172718093	172718093	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115599	191115599	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10614701	10614702	+	IGR	DNP	GA	AT	AT			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	40899119	40899119	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17566761	17566761	+	IGR	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	200524284	200524284	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4561849	4561849	+	IGR	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424657	81424657	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92028749	92028749	+	IGR	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175786187	175786187	+	IGR	SNP	A	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75263804	75263804	+	IGR	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	151948476	151948476	+	IGR	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	62971696	62971696	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9024934	9024934	+	IGR	SNP	T	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165210018	165210018	+	IGR	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910321	25910321	+	IGR	SNP	T	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	55135191	55135192	+	IGR	INS	-	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84760190	84760190	+	IGR	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84845798	84845798	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778670	80778670	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143009948	143009948	+	IGR	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149589422	149589422	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21261096	21261096	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47507757	47507757	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92921872	92921873	+	IGR	DNP	GG	TT	TT			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120845585	120845585	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120337811	120337811	+	IGR	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122251585	122251585	+	IGR	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261343	127261343	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128175765	128175765	+	IGR	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134572595	134572595	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	71948365	71948366	+	IGR	DNP	GG	TT	TT			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	88622457	88622457	+	IGR	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	90815593	90815593	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	970714	970714	+	IGR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13478309	13478309	+	IGR	SNP	A	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP2	6844	broad.mit.edu	37	17	8064056	8064057	+	3'UTR	DEL	AC	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135638789	135638789	+	3'UTR	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98810888	98810888	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR25	79446	broad.mit.edu	37	14	100847905	100847905	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR65	149465	broad.mit.edu	37	1	43638521	43638521	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	79245725	79245725	+	3'UTR	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAB2	56949	broad.mit.edu	37	19	7684771	7684771	+	Intron	SNP	C	G	G			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17202764	17202764	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12B	340554	broad.mit.edu	37	X	64722773	64722773	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC14	23174	broad.mit.edu	37	16	87447928	87447928	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE27	118813	broad.mit.edu	37	10	99519120	99519121	+	3'UTR	DEL	CC	-	-			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND15	84225	broad.mit.edu	37	17	4648623	4648623	+	Silent	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45920590	45920590	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF141	7700	broad.mit.edu	37	4	367610	367610	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52198897	52198897	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280B	140883	broad.mit.edu	37	22	22843165	22843165	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44489138	44489138	+	Silent	SNP	G	T	T	rs138400939		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF653	115950	broad.mit.edu	37	19	11598552	11598552	+	Silent	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF707	286075	broad.mit.edu	37	8	144772428	144772428	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63667446	63667446	+	5'Flank	SNP	C	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF800	168850	broad.mit.edu	37	7	127013680	127013680	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP3	7784	broad.mit.edu	37	7	76069710	76069710	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23000918	23000918	+	Intron	SNP	G	T	T			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34812401	34812401	+	5'Flank	SNP	G	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34812405	34812405	+	5'Flank	SNP	G	C	C			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89428389	89428389	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69332303	69332303	+	Intron	SNP	C	A	A			TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
