Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7726787	7726787	+	Silent	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20668466	20668466	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101591910	101591910	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44079912	44079912	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109661794	109661794	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109661799	109661799	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89382144	89382144	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX2	8309	broad.mit.edu	37	3	58514714	58514714	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPL2	92370	broad.mit.edu	37	3	141006085	141006085	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20483115	20483115	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL7B	10880	broad.mit.edu	37	9	111617373	111617373	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL8	81569	broad.mit.edu	37	1	18149852	18149852	+	Splice_Site	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42853507	42853507	+	Missense_Mutation	SNP	G	T	T	rs138490145		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39537481	39537481	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106494514	106494514	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106573754	106573754	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106805190	106805190	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24326279	24326279	+	Splice_Site	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24334069	24334069	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128862031	128862031	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43826499	43826499	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43925915	43925915	+	Missense_Mutation	SNP	G	T	T	rs80268015		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64468799	64468799	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45650023	45650023	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25048944	25048944	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50325833	50325833	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131916433	131916433	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147743813	147743813	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148037217	148037217	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148068787	148068787	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74301971	74301971	+	5'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100329901	100329901	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105410307	105410307	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105411915	105411915	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33293463	33293463	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73717864	73717864	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMAC1L2	83650	broad.mit.edu	37	8	11189238	11189238	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	113748530	113748530	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54431318	54431318	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14851954	14851954	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD5	63926	broad.mit.edu	37	20	10026385	10026385	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90347444	90347444	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA1	301	broad.mit.edu	37	9	75778406	75778406	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA4	307	broad.mit.edu	37	2	70035165	70035165	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2B1	163	broad.mit.edu	37	17	33935316	33935316	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26848972	26848972	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB3	10307	broad.mit.edu	37	5	139943781	139943781	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21233331	21233331	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOOL	139322	broad.mit.edu	37	X	84258822	84258822	+	5'Flank	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47592674	47592674	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35781139	35781139	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176863929	176863929	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG9A	79065	broad.mit.edu	37	2	220085370	220085370	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160033812	160033812	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1B2	526	broad.mit.edu	37	8	20073974	20073974	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B3	148229	broad.mit.edu	37	19	1811740	1811740	+	5'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143562550	143562550	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70071411	70071411	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1391159	1391159	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70806102	70806102	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND7	222389	broad.mit.edu	37	10	13494470	13494470	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31622623	31622623	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140494268	140494268	+	Splice_Site	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50167916	50167916	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137499603	137499603	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD3	22903	broad.mit.edu	37	20	11898955	11898955	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTD	686	broad.mit.edu	37	3	15677046	15677046	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100613165	100613165	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103292158	103292158	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf46	120534	broad.mit.edu	37	11	30352778	30352778	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf52	91894	broad.mit.edu	37	11	111794877	111794877	+	Intron	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81244254	81244254	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf46	123775	broad.mit.edu	37	16	81095024	81095024	+	Silent	SNP	C	A	A	rs76579573	byFrequency;by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19656206	19656206	+	Splice_Site	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170955626	170955626	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9496977	9496977	+	Silent	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf195	79025	broad.mit.edu	37	20	62187726	62187726	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf54	113278	broad.mit.edu	37	20	744476	744476	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf24	27013	broad.mit.edu	37	2	220038064	220038064	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf66	401027	broad.mit.edu	37	2	197674047	197674047	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf67	151050	broad.mit.edu	37	2	210887823	210887823	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf20	84077	broad.mit.edu	37	3	14762972	14762972	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf48	151649	broad.mit.edu	37	3	20054009	20054009	+	5'Flank	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41186174	41186174	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf201	404220	broad.mit.edu	37	6	4125453	4125453	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf23	79161	broad.mit.edu	37	7	86827212	86827212	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf102	375748	broad.mit.edu	37	9	98690246	98690246	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABC1	56997	broad.mit.edu	37	1	227171593	227171593	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81624225	81624225	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54604170	54604170	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64876837	64876837	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCB	797	broad.mit.edu	37	11	15096262	15096262	+	5'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241533901	241533901	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241535790	241535790	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44148766	44148766	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30886543	30886543	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35910451	35910451	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104937552	104937552	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1A	54862	broad.mit.edu	37	19	14040397	14040397	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC125	202243	broad.mit.edu	37	5	68629787	68629787	+	5'Flank	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179736949	179736949	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106209934	106209934	+	Missense_Mutation	SNP	G	T	T	rs138183014		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111296569	111296569	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130898003	130898003	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC90A	63933	broad.mit.edu	37	6	13802537	13802537	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74521964	74521964	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7639558	7639558	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300956	158300956	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD274	29126	broad.mit.edu	37	9	5466808	5466808	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157805847	157805847	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD79B	974	broad.mit.edu	37	17	62006911	62006911	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83378559	83378559	+	Silent	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58571518	58571518	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25565006	25565006	+	Missense_Mutation	SNP	C	A	A	rs151110746		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63529984	63529984	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63547583	63547583	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881273	26881273	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21974560	21974560	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46931885	46931885	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49030440	49030440	+	3'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR2	3080	broad.mit.edu	37	1	196928191	196928191	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	418044	418044	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120214178	120214178	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46783744	46783744	+	Splice_Site	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86905999	86905999	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143039237	143039237	+	Splice_Site	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC3A	10143	broad.mit.edu	37	16	78064459	78064459	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2P	1197	broad.mit.edu	37	7	23625879	23625879	+	5'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140122658	140122658	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM3	123920	broad.mit.edu	37	16	66643754	66643754	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT6	57472	broad.mit.edu	37	5	179993993	179993993	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41337491	41337492	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41374668	41374668	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205033990	205033990	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74385598	74385598	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76501225	76501225	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COIL	8161	broad.mit.edu	37	17	55027026	55027026	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COIL	8161	broad.mit.edu	37	17	55038196	55038196	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103428231	103428231	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101747956	101747956	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86355338	86355338	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189870935	189870935	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107802269	107802269	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107807111	107807111	+	Splice_Site	SNP	G	T	T	rs104886350		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107898561	107898561	+	Missense_Mutation	SNP	G	T	T	rs104886223		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10084181	10084181	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10096468	10096468	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238249699	238249699	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48613229	48613229	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70964868	70964868	+	Silent	SNP	C	A	A	rs145650924		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47765481	47765481	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47840020	47840020	+	5'UTR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211466964	211466964	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125528294	125528294	+	Intron	SNP	C	A	A	rs115623953	by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125558608	125558608	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAP	10491	broad.mit.edu	37	3	33174052	33174052	+	Missense_Mutation	SNP	G	C	C	rs111525897		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37328989	37328989	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37331522	37331522	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2944825	2944825	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34049141	34049141	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113326767	113326767	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113349999	113349999	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113358306	113358306	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113668537	113668537	+	Silent	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114031236	114031236	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG5	10675	broad.mit.edu	37	3	47603999	47603999	+	3'UTR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166451759	166451759	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39763376	39763376	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80808895	80808895	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSF	8722	broad.mit.edu	37	11	66332545	66332545	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101845330	101845330	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111772477	111772477	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	48993685	48993685	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156819862	156819862	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72360201	72360201	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15791131	15791131	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4X1	260293	broad.mit.edu	37	1	47489621	47489621	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59793303	59793303	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57537871	57537871	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90312088	90312088	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK2	23604	broad.mit.edu	37	15	64231578	64231578	+	Intron	SNP	G	A	A	rs75770249		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZAP1	26528	broad.mit.edu	37	19	1430351	1430351	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885723	88885723	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAKD	79877	broad.mit.edu	37	17	43107426	43107426	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP2	167227	broad.mit.edu	37	5	112312476	112312476	+	5'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162725424	162725424	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX52	11056	broad.mit.edu	37	17	35984500	35984500	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX5	1655	broad.mit.edu	37	17	62499955	62499958	+	Frame_Shift_Del	DEL	TGAT	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31566360	31566360	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGAT1	8694	broad.mit.edu	37	8	145540826	145540827	+	Intron	DEL	CA	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14378261	14378261	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137148322	137148322	+	Missense_Mutation	SNP	C	A	A	rs78898727		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKZ	8525	broad.mit.edu	37	11	46400077	46400077	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHFR	1719	broad.mit.edu	37	5	79933673	79933673	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX16	8449	broad.mit.edu	37	6	30639186	30639186	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L	115752	broad.mit.edu	37	15	66610849	66610849	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	232172460	232172460	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIXDC1	85458	broad.mit.edu	37	11	111864309	111864309	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83525469	83525469	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124345771	124345771	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32380907	32380907	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32563439	32563439	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13923425	13923425	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72301559	72301559	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72308104	72308104	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169446071	169446071	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPCR1	135656	broad.mit.edu	37	6	30920784	30920784	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116573173	116573173	+	Intron	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP3	10072	broad.mit.edu	37	11	66272113	66272113	+	Missense_Mutation	SNP	G	C	C	rs35493089		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP8	54878	broad.mit.edu	37	15	65779977	65779977	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA4	55211	broad.mit.edu	37	3	109049664	109049664	+	Intron	DEL	A	-	-	rs35734174		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63977659	63977659	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27121559	27121559	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117310107	117310107	+	Missense_Mutation	SNP	C	A	A	rs61730454	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102496195	102496195	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM3	80267	broad.mit.edu	37	1	184679666	184679666	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN3	1908	broad.mit.edu	37	20	57896227	57896227	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36324452	36324452	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFEMP2	30008	broad.mit.edu	37	11	65635362	65635362	+	Silent	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL6	25975	broad.mit.edu	37	X	13642112	13642112	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38458550	38458550	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHHADH	1962	broad.mit.edu	37	3	184910894	184910894	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140646836	140646836	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1B	10289	broad.mit.edu	37	3	40352529	40352529	+	Silent	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21307472	21307472	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36917705	36917705	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14883382	14883382	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43933986	43933986	+	Splice_Site	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD2	954	broad.mit.edu	37	9	139945644	139945644	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5415909	5415909	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA2	1969	broad.mit.edu	37	1	16455882	16455882	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142568118	142568118	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133622639	133622639	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F12	2161	broad.mit.edu	37	5	176830319	176830319	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6145961	6145961	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139158306	139158306	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM168B	130074	broad.mit.edu	37	2	131813266	131813266	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15290756	15290756	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188A	80013	broad.mit.edu	37	10	15820911	15820911	+	3'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37026687	37026687	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55C	91775	broad.mit.edu	37	3	101540808	101540808	+	3'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM57B	83723	broad.mit.edu	37	16	30038006	30038006	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156589905	156589905	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54805963	54805963	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10107090	10107090	+	Silent	SNP	G	T	T	rs142144794		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASN	2194	broad.mit.edu	37	17	80045689	80045689	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92534672	92534672	+	Silent	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45929753	45929753	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48713085	48713085	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127686665	127686666	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8165957	8165957	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBP2	8789	broad.mit.edu	37	9	97349768	97349768	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159275977	159275977	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157650724	157650724	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGB	2244	broad.mit.edu	37	4	155489541	155489541	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32735271	32735271	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF23	8074	broad.mit.edu	37	12	4488554	4488554	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP3	2287	broad.mit.edu	37	14	45603518	45603518	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152325492	152325492	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152276020	152276020	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152280635	152280635	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84604696	84604696	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58120479	58120479	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171250038	171250038	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159653518	159653518	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109284551	109284551	+	3'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK2	3607	broad.mit.edu	37	17	80544327	80544327	+	Intron	DEL	G	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP4	116113	broad.mit.edu	37	6	41552696	41552696	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85862723	85862723	+	3'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131234555	131234555	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48564827	48564827	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49195971	49195971	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT11	170384	broad.mit.edu	37	10	75533453	75533453	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161324499	161324499	+	3'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161580234	161580234	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27725868	27725868	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26582019	26582019	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST2	64090	broad.mit.edu	37	2	242741367	242741367	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	154801049	154801049	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L3	283431	broad.mit.edu	37	12	101011503	101011503	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT2	2651	broad.mit.edu	37	6	10529565	10529565	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74865729	74865729	+	3'UTR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF5	8200	broad.mit.edu	37	20	34022074	34022074	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI2	2665	broad.mit.edu	37	10	5827102	5827102	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEN1	348654	broad.mit.edu	37	2	17953925	17953925	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM2	84340	broad.mit.edu	37	5	74055140	74055140	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85779914	85779914	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61994708	61994708	+	Missense_Mutation	SNP	G	C	C	rs148474991		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958593	61958593	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42629274	42629274	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA8	2703	broad.mit.edu	37	1	147381011	147381011	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121726545	121726545	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLOD4	51031	broad.mit.edu	37	17	663352	663352	+	3'UTR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPPA	29926	broad.mit.edu	37	2	220366326	220366326	+	Intron	DEL	G	-	-	rs111228471		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNA12	2768	broad.mit.edu	37	7	2875479	2875479	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1	65056	broad.mit.edu	37	5	56531911	56531911	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR114	221188	broad.mit.edu	37	16	57596965	57596965	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR183	1880	broad.mit.edu	37	13	99947695	99947696	+	Missense_Mutation	DNP	TT	GA	GA			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR4	2828	broad.mit.edu	37	19	46094546	46094546	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR6	2830	broad.mit.edu	37	6	110300445	110300445	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREM2	64388	broad.mit.edu	37	1	240656352	240656352	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94690466	94690466	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13715647	13715647	+	3'UTR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52658789	52658789	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52701131	52701131	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2H1	2965	broad.mit.edu	37	11	18361082	18361082	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD1	9569	broad.mit.edu	37	7	73952477	73952477	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HABP2	3026	broad.mit.edu	37	10	115334134	115334134	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156469677	156469677	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30662469	30662469	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93220264	93220264	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43519179	43519179	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32164150	32164150	+	5'Flank	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222695919	222695919	+	3'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222715289	222715289	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKR1	284459	broad.mit.edu	37	19	37854259	37854259	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-B	3106	broad.mit.edu	37	6	31248135	31248135	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DMB	3109	broad.mit.edu	37	6	32903146	32903146	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-F	3134	broad.mit.edu	37	6	29691171	29691171	+	5'UTR	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29798401	29798401	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30149586	30149586	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120298057	120298057	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPR	10236	broad.mit.edu	37	1	23667598	23667599	+	Intron	DNP	TA	AT	AT			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA2	3199	broad.mit.edu	37	7	27140891	27140891	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186395691	186395691	+	3'UTR	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175110816	175110816	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114378649	114378649	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B7	80270	broad.mit.edu	37	16	30998216	30998216	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB2P	391634	broad.mit.edu	37	4	13339423	13339423	+	RNA	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB4P	664618	broad.mit.edu	37	15	58985220	58985220	+	Silent	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA2	3306	broad.mit.edu	37	14	65008300	65008300	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31711466	31711466	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135593508	135593508	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53573634	53573634	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95036847	95036847	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDO1	3620	broad.mit.edu	37	8	39776555	39776555	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1	3479	broad.mit.edu	37	12	102813420	102813420	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117127643	117127643	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB1	3594	broad.mit.edu	37	19	18188419	18188419	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113786740	113786740	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76735070	76735070	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100965004	100965004	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62504496	62504496	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBC	3626	broad.mit.edu	37	12	57842987	57842987	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121551247	121551247	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15199812	15199812	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS8	55656	broad.mit.edu	37	8	95877917	95877917	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTU	27152	broad.mit.edu	37	4	128564978	128564978	+	Missense_Mutation	SNP	C	T	T	rs147508682		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPW	3653	broad.mit.edu	37	15	25419903	25419903	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107977781	107977781	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA3	3675	broad.mit.edu	37	17	48152893	48152893	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182395540	182395540	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15639265	15639265	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31282234	31282234	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB6	3694	broad.mit.edu	37	2	160958301	160958301	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54818475	54818475	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26493144	26493144	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35229038	35229038	+	Splice_Site	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128250758	128250758	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15468783	15468783	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64953315	64953315	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62739867	62739867	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL1	84056	broad.mit.edu	37	13	30814495	30814495	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA10	3744	broad.mit.edu	37	1	111060811	111060811	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5022097	5022097	+	3'UTR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30032774	30032774	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30032822	30032822	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555301	155555301	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ8	3764	broad.mit.edu	37	12	21926134	21926134	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK17	89822	broad.mit.edu	37	6	39278873	39278873	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118960839	118960839	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196274535	196274535	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM1B	221656	broad.mit.edu	37	6	18222173	18222173	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142638294	142638294	+	3'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142651453	142651453	+	Missense_Mutation	SNP	G	A	A	rs61728832		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142659256	142659256	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106357575	106357575	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24582371	24582371	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29437775	29437775	+	Silent	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118223471	118223471	+	Silent	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118284525	118284525	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43493633	43493633	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	5920563	5920563	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241656827	241656827	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245850143	245850143	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3B	9371	broad.mit.edu	37	20	30918117	30918117	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIN	22944	broad.mit.edu	37	10	7804421	7804421	+	Silent	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55049288	55049288	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL10	317719	broad.mit.edu	37	17	39994098	39994098	+	5'UTR	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL10	317719	broad.mit.edu	37	17	39994152	39994152	+	5'UTR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51380292	51380292	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK8	11202	broad.mit.edu	37	19	51499377	51499377	+	Missense_Mutation	SNP	C	T	T	rs56296296	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	rs121913529		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52843691	52843691	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT84	3890	broad.mit.edu	37	12	52774790	52774790	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-2	337967	broad.mit.edu	37	21	31971137	31971137	+	Silent	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L2HGDH	79944	broad.mit.edu	37	14	50768900	50768900	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR2	3904	broad.mit.edu	37	19	55018975	55018975	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR2	3904	broad.mit.edu	37	19	55021835	55021835	+	3'UTR	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209788495	209788495	+	3'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133932433	133932433	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL2	55915	broad.mit.edu	37	7	55467813	55467813	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2C	353140	broad.mit.edu	37	1	152648533	152648533	+	Silent	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136567022	136567022	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHAL6A	160287	broad.mit.edu	37	11	18485688	18485688	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHB	3945	broad.mit.edu	37	12	21794870	21794870	+	Intron	DEL	T	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LENG8	114823	broad.mit.edu	37	19	54966526	54966526	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202245330	202245330	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL1	3996	broad.mit.edu	37	17	18138698	18138698	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76379705	76379705	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128542	100128542	broad.mit.edu	37	7	150444675	150444675	+	5'Flank	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150776	150776	broad.mit.edu	37	2	132277131	132277131	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55713531	55713531	+	RNA	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148932835	148932835	+	RNA	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161032655	161032655	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62445436	62445436	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62449493	62449493	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39974619	39974619	+	Missense_Mutation	SNP	G	T	T	rs139051268		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151271106	151271106	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140997093	140997094	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141055259	141055259	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141571402	141571402	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141747165	141747165	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141806572	141806573	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170065919	170065919	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC43	254050	broad.mit.edu	37	12	122684775	122684775	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC49	54839	broad.mit.edu	37	15	71329524	71329524	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136858	40136858	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137192	40137192	+	Silent	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC58	116064	broad.mit.edu	37	3	120053875	120053875	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85531700	85531700	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204588512	204588512	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74967652	74967652	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160755507	160755507	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235860531	235860531	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	14474231	14474231	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151303295	151303295	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995914	140995915	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140985169	140985169	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65342407	65342407	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65365287	65365287	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77762312	77762312	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78754592	78754592	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K12	7786	broad.mit.edu	37	12	53877180	53877180	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71209068	71209068	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47956349	47956349	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220752872	220752872	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186953545	186953545	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47796406	47796406	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD2	8932	broad.mit.edu	37	18	51715144	51715144	+	Intron	DEL	A	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD2	8932	broad.mit.edu	37	18	51715152	51715152	+	Intron	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116410034	116410034	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116421096	116421096	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR155	406947	broad.mit.edu	37	21	26946230	26946230	+	5'Flank	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKLN1	4289	broad.mit.edu	37	7	131163290	131163290	+	Intron	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2535737	2535737	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89086833	89086833	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP7	4316	broad.mit.edu	37	11	102398129	102398130	+	Intron	DNP	TA	CT	CT			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33848580	33848580	+	Missense_Mutation	SNP	G	T	T	rs79823152	byFrequency;by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOG	4340	broad.mit.edu	37	6	29638999	29638999	+	3'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON2	23041	broad.mit.edu	37	12	62954583	62954583	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13119528	13119528	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13125264	13125264	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP7	143098	broad.mit.edu	37	10	28436394	28436394	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60741785	60741785	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL44	65080	broad.mit.edu	37	2	224831449	224831449	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL49	740	broad.mit.edu	37	11	64891944	64891944	+	Intron	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSL3	10943	broad.mit.edu	37	X	11790301	11790301	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTCP1	4515	broad.mit.edu	37	X	154293885	154293885	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTF1	4520	broad.mit.edu	37	1	38283017	38283017	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9000432	9000433	+	Intron	DNP	GG	TT	TT			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCT1	80177	broad.mit.edu	37	6	153043513	153043513	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102500	81102500	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10403986	10403986	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23876236	23876236	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23894495	23894495	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23898510	23898510	+	Silent	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10316083	10316083	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10323440	10323440	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16674949	16674949	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109644702	109644702	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26270186	26270186	+	Intron	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69957180	69957180	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST3	7994	broad.mit.edu	37	8	41792282	41792282	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48596397	48596397	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101756709	101756709	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101756712	101756712	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPSA	9476	broad.mit.edu	37	19	50865189	50865189	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78147603	78147603	+	3'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78452876	78452876	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78569175	78569175	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120384050	120384050	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115997569	115997569	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA7	4701	broad.mit.edu	37	19	8381358	8381358	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152472566	152472566	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72400931	72400931	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21191533	21191533	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21594744	21594745	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29576239	29576239	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFXL1	152518	broad.mit.edu	37	4	47900034	47900034	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236201523	236201523	+	Missense_Mutation	SNP	G	A	A	rs142155830	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4Y	22829	broad.mit.edu	37	Y	16952497	16952497	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57054740	57054740	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7070935	7070935	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247588044	247588044	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOBOX	135935	broad.mit.edu	37	7	144097292	144097292	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC4L	79050	broad.mit.edu	37	12	132635965	132635965	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26110042	26110042	+	Silent	SNP	G	A	A	rs139747007	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150704248	150704248	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32169207	32169207	+	Missense_Mutation	SNP	C	G	G	rs139568674		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32181503	32181503	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS1	4861	broad.mit.edu	37	19	47535635	47535635	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32463033	32463033	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32471999	32471999	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51206288	51206288	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6605242	6605242	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN6	221078	broad.mit.edu	37	10	18940128	18940128	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107866766	107866766	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUB1	51667	broad.mit.edu	37	7	151064199	151064199	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUBPL	80224	broad.mit.edu	37	14	32319279	32319279	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT15	55270	broad.mit.edu	37	13	48619794	48619794	+	Splice_Site	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT8	254552	broad.mit.edu	37	11	67395479	67395479	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135282250	135282250	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134026318	134026318	+	Intron	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS1	4938	broad.mit.edu	37	12	113344990	113344990	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113433282	113433282	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228402843	228402843	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228471364	228471364	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODAM	54959	broad.mit.edu	37	4	71064274	71064274	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123519722	123519722	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167625733	167625733	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167642143	167642143	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167675390	167675390	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78443641	78443641	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70783033	70783033	+	Silent	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53602884	53602884	+	5'Flank	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735247	55735247	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G4	390264	broad.mit.edu	37	11	123886884	123886884	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G4	390264	broad.mit.edu	37	11	123886904	123886904	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900308	123900308	+	5'Flank	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H2	26538	broad.mit.edu	37	19	15838973	15838973	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H2	26538	broad.mit.edu	37	19	15839525	15839525	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13A1	79290	broad.mit.edu	37	10	45799084	45799084	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13F1	138805	broad.mit.edu	37	9	107267232	107267232	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14J1	442191	broad.mit.edu	37	6	29274833	29274833	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L8	138881	broad.mit.edu	37	9	125329898	125329898	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1Q1	158131	broad.mit.edu	37	9	125376974	125376974	+	5'Flank	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A7	401427	broad.mit.edu	37	7	143955988	143955988	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248185236	248185236	+	Intron	SNP	C	G	G	rs141972552	by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402653	248402653	+	Silent	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308286	248308286	+	5'Flank	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T12	127064	broad.mit.edu	37	1	248458123	248458123	+	Missense_Mutation	SNP	C	A	A	rs140090926	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248550949	248550949	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059379	248059379	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A47	403253	broad.mit.edu	37	11	48511136	48511136	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322383	55322383	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55340091	55340091	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D5	219875	broad.mit.edu	37	11	123810293	123810293	+	5'Flank	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20389008	20389008	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F1	256892	broad.mit.edu	37	11	4790230	4790230	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F2	119694	broad.mit.edu	37	11	4843470	4843470	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B2	255725	broad.mit.edu	37	11	6191076	6191076	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563864	55563864	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H6	79295	broad.mit.edu	37	3	97983972	97983972	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H6	79295	broad.mit.edu	37	3	97983997	97983997	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703071	55703071	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56020011	56020011	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5V1	81696	broad.mit.edu	37	6	29323943	29323943	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6B2	389090	broad.mit.edu	37	2	240969109	240969109	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C6	283365	broad.mit.edu	37	12	55688106	55688106	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158670176	158670176	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C2	26658	broad.mit.edu	37	19	15052637	15052637	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55905297	55905298	+	5'Flank	DNP	GG	TT	TT			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G9	504191	broad.mit.edu	37	11	56468089	56468089	+	Missense_Mutation	SNP	T	A	A	rs62619921		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC1L	4998	broad.mit.edu	37	1	52851472	52851472	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26725160	26725160	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD5	55593	broad.mit.edu	37	X	48781242	48781242	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29583892	29583892	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29614829	29614829	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41870398	41870398	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX2	22953	broad.mit.edu	37	12	133196474	133196474	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACSIN2	11252	broad.mit.edu	37	22	43284834	43284834	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE2	203569	broad.mit.edu	37	X	55116444	55116444	+	Splice_Site	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLG	64895	broad.mit.edu	37	2	60998766	60998766	+	Splice_Site	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176811630	176811630	+	3'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARN	5073	broad.mit.edu	37	16	14700284	14700284	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91138018	91138018	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55582022	55582022	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53422253	53422253	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140250586	140250586	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140186910	140186910	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140189058	140189058	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140573083	140573083	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140589623	140589623	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774087	140774087	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK2	5106	broad.mit.edu	37	14	24572135	24572135	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCM1	5108	broad.mit.edu	37	8	17823761	17823761	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47801665	47801665	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233394396	233394396	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78789943	78789943	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20803388	20803388	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73433087	73433087	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI2	57161	broad.mit.edu	37	14	56763705	56763705	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1C	23396	broad.mit.edu	37	19	3641685	3641685	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1C	23396	broad.mit.edu	37	19	3645875	3645875	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15444019	15444019	+	Intron	DEL	C	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47906320	47906320	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110445422	110445424	+	In_Frame_Del	DEL	GTT	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51524526	51524526	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42046462	42046462	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242383324	242383324	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242383405	242383405	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242428646	242428646	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131904333	131904333	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68045031	68045031	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161173185	161173185	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126751210	126751210	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208218405	208218405	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131879026	131879026	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131883442	131883442	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118360618	118360618	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP2	5408	broad.mit.edu	37	10	118386413	118386414	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118220524	118220524	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84634174	84634174	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLM	27434	broad.mit.edu	37	7	44113476	44113476	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121217437	121217437	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3E	55718	broad.mit.edu	37	16	22314227	22314227	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104146	53104146	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23833297	23833297	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149215939	149215939	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76794229	76794229	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R4	5524	broad.mit.edu	37	9	131885446	131885446	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPTC7	160760	broad.mit.edu	37	12	110977584	110977584	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAME	23532	broad.mit.edu	37	22	22892596	22892596	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23517956	23517956	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44566424	44566424	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47268039	47268039	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68942818	68942818	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120021828	120021828	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45122524	45122524	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10383137	10383137	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN2	5664	broad.mit.edu	37	1	227068277	227068277	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43348630	43348630	+	3'UTR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43688814	43688814	+	Intron	SNP	G	A	A	rs111533954		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43411020	43411020	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43268239	43268239	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD13	5719	broad.mit.edu	37	11	249047	249047	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD3	55037	broad.mit.edu	37	2	86348591	86348591	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH2	8643	broad.mit.edu	37	1	45307784	45307784	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117504136	117504136	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTHLH	5744	broad.mit.edu	37	12	28116578	28116578	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96827133	96827133	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8340448	8340448	+	Silent	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8449900	8449900	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8504469	8504469	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55718417	55718417	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158325361	158325361	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220161604	220161604	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15704327	15704327	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121651013	121651013	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3B	5865	broad.mit.edu	37	1	52403027	52403027	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD18	56852	broad.mit.edu	37	3	8955464	8955464	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95403926	95403926	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109380702	109380702	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109382540	109382540	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASIP1	54922	broad.mit.edu	37	19	49225186	49225186	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24580932	24580932	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM26	64062	broad.mit.edu	37	13	79945047	79945047	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385513	79385513	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103163929	103163929	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103322530	103322530	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REL	5966	broad.mit.edu	37	2	61149634	61149634	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERG	85004	broad.mit.edu	37	12	15262005	15262005	+	3'UTR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC2	5982	broad.mit.edu	37	7	73668693	73668693	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD3	55159	broad.mit.edu	37	16	74662599	74662599	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101084367	101084367	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73029227	73029227	+	3'UTR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12883520	12883520	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE2	6036	broad.mit.edu	37	14	21424014	21424014	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31526097	31526097	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF31	55072	broad.mit.edu	37	14	24626903	24626903	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94486199	94486199	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10465503	10465503	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55609264	55609264	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP3	79657	broad.mit.edu	37	12	48073436	48073436	+	Intron	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38144877	38144877	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP1	8568	broad.mit.edu	37	21	45220427	45220427	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH1	89765	broad.mit.edu	37	21	43902867	43902867	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTEL1	51750	broad.mit.edu	37	20	62298989	62298989	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159566335	159566335	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38942578	38942578	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39008033	39008033	+	Silent	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237551440	237551440	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33895447	33895447	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33962753	33962753	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50406727	50406727	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92762155	92762155	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92731758	92731759	+	Frame_Shift_Ins	INS	-	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30	8819	broad.mit.edu	37	4	174292240	174292240	+	5'UTR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAR1A	56681	broad.mit.edu	37	10	71913618	71913618	+	Silent	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAR1A	56681	broad.mit.edu	37	10	71920720	71920720	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARF1	8578	broad.mit.edu	37	17	1543189	1543189	+	Intron	DEL	G	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCCPDH	51097	broad.mit.edu	37	1	246927551	246927551	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25689566	25689566	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38739040	38739040	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38888217	38888217	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165946747	165946747	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN1	9805	broad.mit.edu	37	7	29976370	29976370	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71346482	71346482	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71346525	71346525	+	Intron	SNP	C	T	T	rs149660021	by1000genomes	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC63	11231	broad.mit.edu	37	6	108218735	108218735	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9054132	9054133	+	Intron	DNP	CC	AA	AA			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9066421	9066421	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA13	388007	broad.mit.edu	37	14	95111291	95111291	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61310635	61310635	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100777155	100777155	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47164413	47164414	+	Frame_Shift_Ins	INS	-	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT1	51460	broad.mit.edu	37	3	52962181	52962181	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGTB	54557	broad.mit.edu	37	5	65008852	65008852	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4B	387694	broad.mit.edu	37	10	82348575	82348575	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL2	6456	broad.mit.edu	37	9	17795682	17795682	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3KBP1	30011	broad.mit.edu	37	X	19568124	19568124	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1908406	1908406	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP2	8935	broad.mit.edu	37	7	27022789	27022789	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122757399	122757399	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99356687	99356687	+	Silent	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99378453	99378453	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119026618	119026618	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A3	6572	broad.mit.edu	37	10	50820036	50820036	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A32	81034	broad.mit.edu	37	8	104415420	104415420	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92307866	92307866	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45564558	45564558	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E4	339665	broad.mit.edu	37	22	31032660	31032660	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A3	84255	broad.mit.edu	37	7	140055463	140055463	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18242091	18242091	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A13	91252	broad.mit.edu	37	11	47381379	47381379	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A1	27173	broad.mit.edu	37	1	153932916	153932916	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75680203	75680203	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24888359	24888359	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A12	159963	broad.mit.edu	37	11	26700146	26700146	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101603509	101603509	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A9	200010	broad.mit.edu	37	1	48701566	48701566	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A13	6540	broad.mit.edu	37	12	333523	333523	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A13	157724	broad.mit.edu	37	8	87242447	87242447	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40342547	40342547	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103148979	103148979	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21428305	21428305	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84453826	84453826	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904874	144904874	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142718545	142718545	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86368638	86368638	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11105387	11105387	+	Intron	DEL	T	-	-	rs113802009		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2762207	2762207	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156223237	156223237	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183511555	183511557	+	In_Frame_Del	DEL	ACA	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMTN	6525	broad.mit.edu	37	22	31487707	31487707	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCAIP	9627	broad.mit.edu	37	5	121780446	121780446	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51362327	51362327	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51449156	51449156	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1079468	1079468	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX16	64089	broad.mit.edu	37	8	82720128	82720128	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108923853	108923853	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA4	171169	broad.mit.edu	37	19	49110448	49110448	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49156969	49156969	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123594501	123594501	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144337347	144337347	+	3'UTR	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52926965	52926965	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA22	84690	broad.mit.edu	37	17	3343342	3343342	+	3'UTR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE1	285955	broad.mit.edu	37	7	44046813	44046813	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35776410	35776410	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55914087	55914087	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPSB1	80176	broad.mit.edu	37	1	9416202	9416202	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158627350	158627350	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158632506	158632506	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158653091	158653091	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131339595	131339595	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX2	27286	broad.mit.edu	37	X	99920572	99920572	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17362912	17362912	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17373574	17373574	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68471961	68471961	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171544702	171544702	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	121137243	121137243	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	892324	892324	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD1	64420	broad.mit.edu	37	9	114904686	114904686	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115527385	115527386	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10910380	10910380	+	Splice_Site	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT14	255928	broad.mit.edu	37	1	210267755	210267755	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT2	127833	broad.mit.edu	37	1	202572283	202572283	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT6	148281	broad.mit.edu	37	1	114682455	114682455	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85435010	85435010	+	Intron	SNP	T	C	C	rs72355598		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR1	134864	broad.mit.edu	37	6	132966566	132966566	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1C	9013	broad.mit.edu	37	16	84212613	84212613	+	Silent	SNP	G	T	T	rs138100695		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33458624	33458624	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D16	125058	broad.mit.edu	37	17	77926534	77926534	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2	55357	broad.mit.edu	37	9	100961605	100961605	+	3'UTR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBRG4	9238	broad.mit.edu	37	7	45141142	45141142	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104462107	104462107	+	Silent	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27190515	27190515	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50805561	50805561	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177403	89177403	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2320491	2320491	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2384386	2384386	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	71953117	71953117	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137814464	137814464	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32496832	32496832	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TK2	7084	broad.mit.edu	37	16	66551131	66551131	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32961968	32961968	+	Silent	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32961989	32961989	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM156	80008	broad.mit.edu	37	4	39000506	39000506	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM164	84187	broad.mit.edu	37	X	109388104	109388104	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM174	134288	broad.mit.edu	37	5	72469765	72469765	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90B	79953	broad.mit.edu	37	20	24565510	24565510	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68925001	68925002	+	Intron	DNP	GG	TT	TT			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68938203	68938203	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19687406	19687406	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB15B	286527	broad.mit.edu	37	X	103216341	103216341	+	5'Flank	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29669365	29669365	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29709752	29709752	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX3	54495	broad.mit.edu	37	18	66350137	66350137	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049198	175049198	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5354591	5354591	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579471	7579471	+	Frame_Shift_Del	DEL	G	-	-	rs56275308		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189604442	189604442	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1520666	1520666	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186286693	186286693	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20024286	20024286	+	Silent	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10933749	10933749	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934071	10934071	+	Silent	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30121598	30121598	+	3'UTR	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30128165	30128165	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032690	55032690	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55036774	55036774	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM49	57093	broad.mit.edu	37	11	89537473	89537473	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM60	166655	broad.mit.edu	37	4	165962701	165962701	+	3'UTR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38155515	38155515	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230724103	230724103	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72935108	72935108	+	3'UTR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111078377	111078377	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135549258	135549258	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45783989	45783989	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116426404	116426404	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142479771	142479771	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC1	7248	broad.mit.edu	37	9	135781380	135781381	+	Missense_Mutation	DNP	CG	AA	AA	rs149439187		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51873149	51873149	+	Intron	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769436	31769436	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK3	81629	broad.mit.edu	37	1	32829553	32829553	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180320033	180320033	+	5'UTR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99678233	99678233	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99759098	99759098	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38537963	38537963	+	Silent	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL10	254173	broad.mit.edu	37	1	1119234	1119234	+	Intron	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179499398	179499398	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179590390	179590390	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179614245	179614245	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179632810	179632810	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158882747	158882747	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37927822	37927822	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1	7307	broad.mit.edu	37	21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68504691	68504691	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2CBP	90025	broad.mit.edu	37	6	83733789	83733789	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118244409	118244409	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43281045	43281045	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN2B	137886	broad.mit.edu	37	8	59337166	59337166	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128941255	128941255	+	Silent	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96519616	96519616	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69519874	69519874	+	Silent	SNP	C	A	A	rs139060822	byFrequency	TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70148399	70148399	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96124011	96124011	+	Silent	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNK	85451	broad.mit.edu	37	17	73780779	73780779	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP1	7378	broad.mit.edu	37	7	48143002	48143002	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRFS1	7386	broad.mit.edu	37	19	29698810	29698810	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215933287	215933287	+	Intron	SNP	A	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP10	9100	broad.mit.edu	37	16	84779061	84779061	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179501817	179501817	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP1	7398	broad.mit.edu	37	1	62915921	62915921	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5038423	5038423	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8988572	8988572	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UST	10090	broad.mit.edu	37	6	149275032	149275032	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	76849309	76849309	+	IGR	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107607333	107607333	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49867101	49867101	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50206782	50206782	+	IGR	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483612	51483612	+	IGR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55059930	55059930	+	IGR	DEL	G	-	-			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143852	56143852	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56216158	56216158	+	IGR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58059440	58059440	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82516608	82516608	+	IGR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	37937872	37937872	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43030795	43030795	+	IGR	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63396302	63396302	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64216949	64216949	+	IGR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19538070	19538070	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411710	19411710	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19468510	19468510	+	IGR	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43769847	43769847	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	81726331	81726332	+	IGR	DNP	CT	AG	AG			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96103265	96103265	+	IGR	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20170347	20170347	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140757	21140757	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33006914	33006914	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33371643	33371643	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34956866	34956866	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51679765	51679765	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55780711	55780711	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	74877230	74877230	+	IGR	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20623946	20623946	+	IGR	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25308953	25308953	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14613774	14613774	+	IGR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39369262	39369262	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23158843	23158843	+	IGR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35978221	35978221	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	41327314	41327314	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101736495	101736495	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106435821	106435821	+	IGR	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111391292	111391292	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12899946	12899946	+	IGR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149090225	149090225	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194158911	194158911	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209406646	209406646	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240136160	240136160	+	IGR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902751	247902751	+	IGR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79216315	79216315	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873970	29873970	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36231261	36231261	+	IGR	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40626965	40626966	+	IGR	DNP	CC	AA	AA			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	16130646	16130646	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24475519	24475519	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107579707	107579707	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108519548	108519548	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162360270	162360270	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177465520	177465520	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065048	34065048	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83084057	83084057	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91940386	91940386	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	11952064	11952064	+	IGR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	131245712	131245712	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142895270	142895270	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	23033055	23033055	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75387959	75387959	+	IGR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068442	96068442	+	IGR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068768	96068768	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139481920	139481920	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189310673	189310673	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	62971434	62971434	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63683523	63683523	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216429	64216430	+	IGR	DNP	GC	AA	AA			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69416514	69416514	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70113876	70113876	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70276499	70276499	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9424126	9424126	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	120911570	120911570	+	IGR	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	13638059	13638059	+	IGR	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165455620	165455620	+	IGR	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	53156155	53156155	+	IGR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114218596	114218596	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27979306	27979306	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54350567	54350567	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	68644004	68644004	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778036	80778036	+	IGR	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778106	80778106	+	IGR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138373842	138373842	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707409	144707409	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42834995	42834995	+	IGR	SNP	T	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53854924	53854924	+	IGR	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55003670	55003670	+	IGR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56358080	56358080	+	IGR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106023462	106023462	+	IGR	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115330702	115330702	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33827084	33827084	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107360620	107360620	+	IGR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	124282075	124282075	+	IGR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30558933	30558933	+	IGR	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44100166	44100166	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68438587	68438587	+	IGR	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69501909	69501909	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84672855	84672855	+	IGR	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84674503	84674503	+	IGR	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101034234	101034234	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115828129	115828129	+	IGR	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136742750	136742750	+	IGR	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	137570095	137570095	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144258354	144258354	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145072391	145072391	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	152870749	152870749	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	75555425	75555425	+	IGR	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160388876	160388876	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82779473	82779473	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87017813	87017813	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51455667	51455667	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSNL1	7447	broad.mit.edu	37	2	17830643	17830643	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6121229	6121229	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF1	8936	broad.mit.edu	37	6	110424491	110424491	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR27	155368	broad.mit.edu	37	7	73249147	73249147	+	Silent	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85750188	85750188	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT16	51384	broad.mit.edu	37	7	120965378	120965378	+	5'Flank	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6021461	6021461	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108600180	108600180	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32413601	32413601	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168102059	168102059	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168114688	168114688	+	3'UTR	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC4	7518	broad.mit.edu	37	5	82499255	82499255	+	Intron	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142123810	142123810	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21328900	21328900	+	Intron	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75264581	75264581	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YY1	7528	broad.mit.edu	37	14	100743846	100743846	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100345752	100345752	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114069321	114069321	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC18	84243	broad.mit.edu	37	1	27180149	27180149	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618756	77618756	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68222597	68222597	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68222599	68222599	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45905216	45905216	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45918993	45918993	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22155045	22155045	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271585	22271585	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF451	26036	broad.mit.edu	37	6	56999642	56999642	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57193643	57193643	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22805060	22805060	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56620993	56620993	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935025	30935025	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9577253	9577253	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585B	92285	broad.mit.edu	37	19	37678134	37678135	+	Missense_Mutation	DNP	CA	GT	GT			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF642	339559	broad.mit.edu	37	1	40961204	40961204	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53667774	53667774	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF695	57116	broad.mit.edu	37	1	247162709	247162709	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57510075	57510075	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63673615	63673615	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF768	79724	broad.mit.edu	37	16	30536017	30536017	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF805	390980	broad.mit.edu	37	19	57755474	57755474	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57829409	57829409	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58551710	58551710	+	Intron	SNP	G	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58563761	58563761	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM3	140831	broad.mit.edu	37	20	44505598	44505598	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74564439	74564439	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22265631	22265631	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22924162	22924162	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14183526	14183526	+	Intron	SNP	A	G	G	rs145908161		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15872109	15872109	+	Intron	SNP	T	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23171187	23171187	+	5'Flank	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143223220	143223220	+	Intron	SNP	T	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90049906	90049906	+	Intron	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90248937	90248937	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22423959	22423959	+	5'Flank	SNP	G	C	C	rs11916516		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75467366	75467366	+	5'Flank	SNP	A	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69343414	69343414	+	Intron	SNP	G	C	C			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	26322372	26322372	+	RNA	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142139364	142139364	+	Intron	SNP	C	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142326880	142326880	+	Intron	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66514052	66514052	+	Intron	SNP	C	A	A			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	153626712	153626712	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
