Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACRBP	0	genome.wustl.edu	37	12	6753643	6753643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	12	6753643	6753643	C	T	SNP	ACRBP	NM_032489.2	human	genbank	58_37c	-1	reviewed	missense	c.604	p.E202K	0.120	HMMPfam_PBP_sp32	HMMSmart_KAZAL,HMMPfam_PBP_sp32,superfamily_SSF100895	-	no_errors
ARL6IP6	0	genome.wustl.edu	37	2	153591548	153591548	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	2	153591548	153591548	C	T	SNP	ARL6IP6	NM_152522.4	human	genbank	58_37c	+1	validated	silent	c.495	p.F165	1.000	NULL	NULL	-	no_errors
BEST3	0	genome.wustl.edu	37	12	70072563	70072563	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	12	70072563	70072563	C	A	SNP	BEST3	NM_032735.2	human	genbank	58_37c	-1	validated	nonsense	c.592	p.E198*	1.000	HMMPfam_Bestrophin	HMMPfam_Bestrophin	-	no_errors
C9orf150	0	genome.wustl.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	9	12775861	12775862	-	GGCGGCGGC	INS	C9orf150	NM_203403.1	human	genbank	58_37c	+1	validated	in_frame_ins	c.147_148	p.53in_frame_insGGG	0.005:0.005	NULL	NULL	-	no_errors
C9orf43	0	genome.wustl.edu	37	9	116187646	116187648	+	In_Frame_Del	DEL	GCA	GCA	-	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	9	116187646	116187648	GCA	-	DEL	C9orf43	NM_152786.1	human	genbank	58_37c	+1	predicted	in_frame_del	c.888_890	p.Q300in_frame_del	0.211:0.207:0.211	NULL	NULL	-	no_errors
CECR2	0	genome.wustl.edu	37	22	18018340	18018340	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	22	18018340	18018340	G	A	SNP	CECR2	ENST00000400573	human	ensembl	58_37c	+1	known	missense	c.1222	p.V408I	1.000	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
CUL7	0	genome.wustl.edu	37	6	43018789	43018789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	6	43018789	43018789	G	A	SNP	CUL7	NM_014780.4	human	genbank	58_37c	-1	reviewed	missense	c.1150	p.R384W	1.000	NULL	HMMPfam_Cullin,HMMPfam_APC10,superfamily_Gal_bind_like,PatternScan_CULLIN_1,superfamily_Cullin_homology,superfamily_SSF46785	-	no_errors
DDX53	0	genome.wustl.edu	37	X	23018658	23018658	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	X	23018658	23018658	G	A	SNP	DDX53	NM_182699.2	human	genbank	58_37c	+1	validated	missense	c.484	p.E162K	0.000	superfamily_SSF52540	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_KH,HMMPfam_DEAD,HMMSmart_DEXDc,HMMPfam_KH_1,superfamily_SSF52540,superfamily_SSF54791	-	no_errors
ENSG00000233000	0	genome.wustl.edu	37	4	49639444	49639444	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	4	49639444	49639444	G	T	SNP	ENSG00000233000	ENST00000414551	human	ensembl	58_37c	+1	known	missense	c.41	p.G14V	0.000	NULL	NULL	-	no_start_codon:no_stop_codon
EPPK1	0	genome.wustl.edu	37	8	144940615	144940615	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	8	144940615	144940615	G	A	SNP	EPPK1	NM_031308.1	human	genbank	58_37c	-1	validated	silent	c.6807	p.T2269	0.242	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	pseudogene
EXT2	0	genome.wustl.edu	37	11	44129420	44129420	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	44129420	44129420	C	T	SNP	EXT2	NM_000401.3	human	genbank	58_37c	+1	reviewed	missense	c.197	p.S66L	0.998	NULL	HMMPfam_Exostosin,HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
FAM182B	0	genome.wustl.edu	37	20	25754285	25754285	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	20	25754285	25754285	G	A	SNP	FAM182B	NR_026714.2	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.000	-	-	-	no_errors
FIGN	0	genome.wustl.edu	37	2	164468287	164468287	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	2	164468287	164468287	C	A	SNP	FIGN	NM_018086.2	human	genbank	58_37c	-1	validated	missense	c.55	p.A19S	1.000	NULL	HMMSmart_AAA,HMMPfam_AAA,PatternScan_AAA,superfamily_SSF52540	-	no_errors
H2AFZ	0	genome.wustl.edu	37	4	100870052	100870052	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	4	100870052	100870052	G	A	SNP	H2AFZ	NM_002106.3	human	genbank	58_37c	-1	reviewed	missense	c.241	p.R81C	1.000	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HMGB2	0	genome.wustl.edu	37	4	174254704	174254704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	4	174254704	174254704	C	T	SNP	HMGB2	NM_001130688.1	human	genbank	58_37c	-1	reviewed	missense	c.97	p.D33N	1.000	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_HMG_BOX_1	-	no_errors
IGHV1-24	0	genome.wustl.edu	37	14	106733410	106733410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	14	106733410	106733410	C	T	SNP	IGHV1-24	ENST00000390610	human	ensembl	58_37c	-1	known	missense	c.85	p.E29K	0.832	HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
IMP5	0	genome.wustl.edu	37	17	43922887	43922887	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	17	43922887	43922887	C	T	SNP	IMP5	NM_175882.2	human	genbank	58_37c	+1	validated	silent	c.615	p.A205	0.246	NULL	HMMSmart_SM00730,HMMPfam_Peptidase_A22B,superfamily_Transferrin receptor ectodomain apical domain	-	no_errors
KDM5B	0	genome.wustl.edu	37	1	202743781	202743781	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	202743781	202743781	T	C	SNP	KDM5B	NM_006618.3	human	genbank	58_37c	-1	validated	missense	c.365	p.H122R	0.999	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00249,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PLU-1,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
KIF2A	0	genome.wustl.edu	37	5	61643897	61643897	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	5	61643897	61643897	C	T	SNP	KIF2A	NM_001098511.1	human	genbank	58_37c	+1	validated	missense	c.182	p.S61L	1.000	NULL	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KITLG	0	genome.wustl.edu	37	12	88939633	88939633	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	12	88939633	88939633	G	A	SNP	KITLG	NM_000899.3	human	genbank	58_37c	-1	reviewed	missense	c.25	p.L9F	1.000	HMMPfam_SCF	HMMPfam_SCF,superfamily_4-helical cytokines	-	no_errors
KPNA5	0	genome.wustl.edu	37	6	117013507	117013507	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	6	117013507	117013507	G	A	SNP	KPNA5	NM_002269.2	human	genbank	58_37c	+1	reviewed	missense	c.292	p.D98N	1.000	superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_IBB,superfamily_ARM repeat	-	no_errors
KRT86	0	genome.wustl.edu	37	12	52700027	52700027	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	12	52700027	52700027	G	A	SNP	KRT86	NM_002284.3	human	genbank	58_37c	+1	reviewed	missense	c.1210	p.A404T	1.000	HMMPfam_Filament,PatternScan_IF	HMMPfam_Filament,PatternScan_IF	-	no_errors
LAMA2	0	genome.wustl.edu	37	6	129722392	129722392	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	6	129722392	129722392	C	T	SNP	LAMA2	NM_000426.3	human	genbank	58_37c	+1	reviewed	silent	c.5469	p.S1823	0.999	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I	HMMPfam_Laminin_B,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF56399,superfamily_SSF57196	-	no_errors
LBXCOR1	0	genome.wustl.edu	37	15	68118729	68118729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	15	68118729	68118729	C	T	SNP	LBXCOR1	NM_001031807.1	human	genbank	58_37c	+1	provisional	missense	c.536	p.A179V	1.000	superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind,superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind	-	no_errors
LOC645146	0	genome.wustl.edu	37	1	148854022	148854022	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	148854022	148854022	C	T	SNP	LOC645146	XM_928177.2	human	genbank	58_37c	-1	model	silent	c.69	p.A23	1.000	NULL	NULL	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151879568	151879568	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	7	151879568	151879568	G	A	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.5377	p.L1793F	0.058	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MTO1	0	genome.wustl.edu	37	6	74176211	74176211	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	6	74176211	74176211	G	A	SNP	MTO1	NM_001123226.1	human	genbank	58_37c	+1	reviewed	splice_site	c.418-1	e3-1	1.000	-	-	-	no_errors
MUC16	0	genome.wustl.edu	37	19	9072222	9072222	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	19	9072222	9072222	C	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.15224	p.G5075V	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1266400	1266400	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	1266400	1266400	C	A	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.8299	p.P2767T	0.004	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1270767	1270767	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	1270767	1270767	T	C	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.12666	p.R4222	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
PCDHA8	0	genome.wustl.edu	37	5	140221195	140221195	+	Missense_Mutation	SNP	G	G	C	rs61730626	byFrequency	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	5	140221195	140221195	G	C	SNP	PCDHA8	NM_018911.2	human	genbank	58_37c	+1	reviewed	missense	c.289	p.G97R	0.983	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHF13	0	genome.wustl.edu	37	1	6676836	6676836	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	6676836	6676836	A	C	SNP	PHF13	NM_153812.2	human	genbank	58_37c	+1	validated	missense	c.59	p.K20T	1.000	NULL	HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
PLXNA4	0	genome.wustl.edu	37	7	131831430	131831430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	7	131831430	131831430	C	T	SNP	PLXNA4	NM_020911.1	human	genbank	58_37c	-1	validated	missense	c.4894	p.D1632N	1.000	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors
PPFIA4	0	genome.wustl.edu	37	1	203023240	203023241	+	Frame_Shift_Ins	INS	-	-	GC	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	203023240	203023241	-	GC	INS	PPFIA4	ENST00000447715	human	ensembl	58_37c	+1	known	frame_shift_ins	c.1752_1753	p.P584fs	0.005:0.000	NULL	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2	-	no_errors
PPFIBP2	0	genome.wustl.edu	37	11	7672087	7672087	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	7672087	7672087	C	T	SNP	PPFIBP2	NM_003621.2	human	genbank	58_37c	+1	validated	missense	c.2138	p.S713L	1.000	superfamily_SAM/Pointed domain	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Integrase_DNA,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
PROP1	0	genome.wustl.edu	37	5	177420032	177420032	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	5	177420032	177420032	C	T	SNP	PROP1	NM_006261.4	human	genbank	58_37c	-1	reviewed	missense	c.359	p.R120H	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
PTPRD	0	genome.wustl.edu	37	9	8471022	8471022	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	9	8471022	8471022	C	T	SNP	PTPRD	NM_002839.3	human	genbank	58_37c	-1	reviewed	silent	c.3477	p.E1159	1.000	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SCARNA9	0	genome.wustl.edu	37	11	93454832	93454833	+	RNA	DEL	GT	GT	-	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	11	93454832	93454833	GT	-	DEL	SCARNA9	NR_002569.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.007:0.008	-	-	-	no_errors
SFMBT2	0	genome.wustl.edu	37	10	7262382	7262382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	10	7262382	7262382	G	A	SNP	SFMBT2	NM_001029880.1	human	genbank	58_37c	-1	provisional	missense	c.1321	p.H441Y	0.996	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT	HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_Tudor/PWWP/MBT	-	no_errors
ST7	0	genome.wustl.edu	37	7	116593630	116593630	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	7	116593630	116593630	C	T	SNP	ST7	NM_021908.2	human	genbank	58_37c	+1	reviewed	silent	c.36	p.L12	1.000	NULL	HMMPfam_ST7	-	no_errors
TP73	0	genome.wustl.edu	37	1	3599659	3599659	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	1	3599659	3599659	C	T	SNP	TP73	NM_005427.2	human	genbank	58_37c	+1	reviewed	missense	c.101	p.S34L	0.589	NULL	HMMSmart_SM00454,PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_P53	-	no_errors
UBE2QL1	0	genome.wustl.edu	37	5	6491344	6491344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	5	6491344	6491344	G	A	SNP	UBE2QL1	NM_001145161.1	human	genbank	58_37c	+1	provisional	missense	c.368	p.R123K	1.000	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like	HMMPfam_UQ_con,HMMSmart_UBCc,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBQ-conjugat/RWD-like	-	no_errors
ZNF91	0	genome.wustl.edu	37	19	23543097	23543097	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SF-01A-11D-A142-09	TCGA-A1-A0SF-10B-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b291200e-3c22-411a-85d0-fbe1570acda2	cc8ae8d4-315d-492a-84e9-7ed8630e9c70	19	23543097	23543097	G	A	SNP	ZNF91	NM_003430.2	human	genbank	58_37c	-1	validated	missense	c.2684	p.S895L	0.000	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
