Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTSL1	0	genome.wustl.edu	37	9	18684728	18684728	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	9	18684728	18684728	G	A	SNP	ADAMTSL1	NM_001040272.4	human	genbank	58_37c	+1	validated	missense	c.1504	p.E502K	1.000	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ARC	0	genome.wustl.edu	37	8	143695260	143695260	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	8	143695260	143695260	G	A	SNP	ARC	NM_015193.3	human	genbank	58_37c	-1	validated	missense	c.373	p.R125C	0.742	NULL	NULL	-	no_errors
ASPHD1	0	genome.wustl.edu	37	16	29912801	29912802	+	In_Frame_Ins	INS	-	-	GGG	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	16	29912801	29912802	-	GGG	INS	ASPHD1	NM_181718.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.509_510	p.173in_frame_insG	1.000:1.000	NULL	HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197	-	no_errors
C20orf185	0	genome.wustl.edu	37	20	31656715	31656715	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	20	31656715	31656715	C	A	SNP	C20orf185	NM_182658.1	human	genbank	58_37c	+1	provisional	missense	c.1085	p.A362D	0.362	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP	-	no_errors
C2orf73	0	genome.wustl.edu	37	2	54587645	54587645	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	54587645	54587645	T	C	SNP	C2orf73	NM_001100396.1	human	genbank	58_37c	+1	validated	silent	c.810	p.D270	0.000	NULL	NULL	-	no_errors
CECR2	0	genome.wustl.edu	37	22	18028506	18028506	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	22	18028506	18028506	C	T	SNP	CECR2	ENST00000400573	human	ensembl	58_37c	+1	known	missense	c.3463	p.R1155C	0.994	NULL	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
CEP290	0	genome.wustl.edu	37	12	88472999	88472999	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	88472999	88472999	C	T	SNP	CEP290	NM_025114.3	human	genbank	58_37c	-1	reviewed	missense	c.5234	p.S1745N	1.000	NULL	NULL	-	no_errors
CHP2	0	genome.wustl.edu	37	16	23768630	23768630	+	Missense_Mutation	SNP	G	G	A	rs138042112	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	16	23768630	23768630	G	A	SNP	CHP2	NM_022097.2	human	genbank	58_37c	+1	provisional	missense	c.523	p.V175M	0.001	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
CSMD2	0	genome.wustl.edu	37	1	34090712	34090712	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	1	34090712	34090712	G	A	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	silent	c.5319	p.I1773	0.008	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
DSCAM	0	genome.wustl.edu	37	21	41719645	41719645	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	21	41719645	41719645	G	A	SNP	DSCAM	NM_001389.3	human	genbank	58_37c	-1	validated	missense	c.1162	p.R388C	1.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	12835	12835	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	MT	12835	12835	G	A	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.499	p.A167T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198886	0	genome.wustl.edu	37	MT	10913	10913	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	MT	10913	10913	T	C	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	missense	c.154	p.C52R	NULL	HMMPfam_Oxidored_q5_N	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000231008	0	genome.wustl.edu	37	14	106735111	106735112	+	RNA	INS	-	-	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	14	106735111	106735112	-	T	INS	ENSG00000231008	ENST00000443661	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.008:0.003	-	-	-	no_errors
ENSG00000249291	0	genome.wustl.edu	37	12	91946	91946	+	RNA	SNP	A	A	G	rs71260405	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	91946	91946	A	G	SNP	ENSG00000249291	ENST00000515242	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000251705	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	Y	10037843	10037843	C	T	SNP	ENSG00000251705	ENST00000515896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
ERN1	0	genome.wustl.edu	37	17	62130251	62130251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	62130251	62130251	G	A	SNP	ERN1	NM_001433.3	human	genbank	58_37c	-1	reviewed	silent	c.2142	p.L714	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_PQQ,HMMSmart_SM00580,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_Pkinase,HMMSmart_SM00564	-	no_errors
EWSR1	0	genome.wustl.edu	37	22	29694792	29694792	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	22	29694792	29694792	G	C	SNP	EWSR1	NM_005243.3	human	genbank	58_37c	+1	reviewed	missense	c.1487	p.G496A	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,superfamily_Znf265 first zinc-finger domain	-	no_errors
FAT2	0	genome.wustl.edu	37	5	150922760	150922760	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	150922760	150922760	A	T	SNP	FAT2	NM_001447.2	human	genbank	58_37c	-1	reviewed	missense	c.7928	p.V2643D	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,superfamily_EGF/Laminin	-	no_errors
FRMD4A	0	genome.wustl.edu	37	10	13852832	13852832	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	13852832	13852832	A	G	SNP	FRMD4A	NM_018027.3	human	genbank	58_37c	-1	validated	missense	c.188	p.I63T	0.999	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236	HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
GRM7	0	genome.wustl.edu	37	3	7620374	7620374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	3	7620374	7620374	C	T	SNP	GRM7	NM_181874.2	human	genbank	58_37c	+1	reviewed	missense	c.1781	p.P594L	1.000	HMMPfam_7tm_3	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors
HDAC2	0	genome.wustl.edu	37	6	114292110	114292112	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	6	114292110	114292112	CTG	-	DEL	HDAC2	NM_001527.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.245_243	p.S81in_frame_del	0.004:0.002:0.001	NULL	HMMPfam_Hist_deacetyl,superfamily_SSF52768	-	no_errors
HSD17B4	0	genome.wustl.edu	37	5	118835164	118835164	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	118835164	118835164	C	T	SNP	HSD17B4	NM_000414.2	human	genbank	58_37c	+1	reviewed	silent	c.1125	p.P375	0.993	superfamily_SSF54637	HMMPfam_adh_short,PatternScan_ADH_SHORT,HMMPfam_MaoC_dehydratas,HMMPfam_SCP2,superfamily_NAD(P)-bd,superfamily_SCP2,superfamily_SSF54637	-	no_errors
IGKV3-15	0	genome.wustl.edu	37	2	89385160	89385160	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	89385160	89385160	G	A	SNP	IGKV3-15	ENST00000390252	human	ensembl	58_37c	-1	known	silent	c.27	p.F9	0.791	NULL	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
LMO3	0	genome.wustl.edu	37	12	16713405	16713405	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	16713405	16713405	G	C	SNP	LMO3	NM_001001395.1	human	genbank	58_37c	-1	validated	missense	c.274	p.R92G	1.000	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LOC100129309	0	genome.wustl.edu	37	5	179366952	179366953	+	RNA	INS	-	-	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	179366952	179366953	-	T	INS	LOC100129309	XR_078329.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.009:0.001	-	-	-	pseudogene
LOC100288807	0	genome.wustl.edu	37	7	76689755	76689755	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	7	76689755	76689755	G	T	SNP	LOC100288807	XM_002342739.1	human	genbank	58_37c	-1	model	missense	c.75	p.H25Q	0.001	NULL	NULL	-	no_errors
LOC728888	0	genome.wustl.edu	37	16	29394193	29394193	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	16	29394193	29394193	G	A	SNP	LOC728888	XM_002343430.1	human	genbank	58_37c	-1	model	missense	c.2060	p.P687L	0.002	NULL	HMMPfam_NPIP	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56178135	56178136	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	5	56178135	56178136	-	A	INS	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.3108_3109	p.D1037fs	1.000:1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MED12	0	genome.wustl.edu	37	X	70361800	70361800	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	X	70361800	70361800	A	G	SNP	MED12	NM_005120.2	human	genbank	58_37c	+1	reviewed	missense	c.6476	p.Q2159R	1.000	NULL	HMMPfam_Med12	-	no_errors
MIS12	0	genome.wustl.edu	37	17	5392578	5392578	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	5392578	5392578	A	T	SNP	MIS12	NM_024039.1	human	genbank	58_37c	+1	provisional	missense	c.396	p.L132F	0.000	HMMPfam_Mis12	HMMPfam_Mis12	-	no_errors
MRPL46	0	genome.wustl.edu	37	15	89008087	89008087	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	15	89008087	89008087	G	A	SNP	MRPL46	NM_022163.3	human	genbank	58_37c	-1	reviewed	nonsense	c.436	p.R146*	0.746	NULL	NULL	-	no_errors
NAV3	0	genome.wustl.edu	37	12	78569098	78569098	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	12	78569098	78569098	G	A	SNP	NAV3	NM_014903.4	human	genbank	58_37c	+1	validated	missense	c.4994	p.R1665K	1.000	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PADI2	0	genome.wustl.edu	37	1	17419026	17419026	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	1	17419026	17419026	G	C	SNP	PADI2	NM_007365.2	human	genbank	58_37c	-1	reviewed	missense	c.532	p.L178V	1.000	HMMPfam_PAD_M,superfamily_PAD_central	superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909	-	no_errors
PPID	0	genome.wustl.edu	37	4	159640438	159640438	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	4	159640438	159640438	A	C	SNP	PPID	NM_005038.2	human	genbank	58_37c	-1	reviewed	missense	c.227	p.I76S	1.000	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like	HMMPfam_TPR_1,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
SCN7A	0	genome.wustl.edu	37	2	167263066	167263066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	2	167263066	167263066	C	T	SNP	SCN7A	NM_002976.2	human	genbank	58_37c	-1	validated	missense	c.4073	p.R1358H	0.996	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SYNPO2L	0	genome.wustl.edu	37	10	75406545	75406545	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	75406545	75406545	C	T	SNP	SYNPO2L	NM_001114133.1	human	genbank	58_37c	-1	validated	silent	c.2865	p.R955	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
TMEM99	0	genome.wustl.edu	37	17	38991201	38991201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	17	38991201	38991201	G	A	SNP	TMEM99	NM_145274.2	human	genbank	58_37c	+1	validated	missense	c.433	p.V145I	0.003	NULL	NULL	-	no_errors
TYSND1	0	genome.wustl.edu	37	10	71905831	71905831	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	10	71905831	71905831	G	A	SNP	TYSND1	NM_173555.2	human	genbank	58_37c	-1	validated	missense	c.512	p.S171L	0.970	NULL	superfamily_Trypsin-like serine proteases	-	no_errors
UCKL1	0	genome.wustl.edu	37	20	62575989	62575989	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	20	62575989	62575989	A	C	SNP	UCKL1	NM_017859.2	human	genbank	58_37c	-1	validated	silent	c.753	p.G251	0.083	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_PRTase-like	-	no_errors
UTP3	0	genome.wustl.edu	37	4	71554691	71554693	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	4	71554691	71554693	GGA	-	DEL	UTP3	NM_020368.2	human	genbank	58_37c	+1	validated	in_frame_del	c.297_299	p.E103in_frame_del	0.002:0.002:0.002	NULL	HMMPfam_Sas10_Utp3,HMMPfam_Sas10_Utp3_C	-	no_errors
WDR88	0	genome.wustl.edu	37	19	33639782	33639782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	19	33639782	33639782	C	T	SNP	WDR88	NM_173479.3	human	genbank	58_37c	+1	validated	silent	c.645	p.D215	0.612	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMPfam_PQQ,superfamily_WD40 repeat-like,HMMSmart_SM00564,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZNF217	0	genome.wustl.edu	37	20	52192368	52192368	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SG-01A-11D-A142-09	TCGA-A1-A0SG-10B-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39642c6d-9191-4746-8a9d-62d437bfdce8	cd67f058-5ac6-427c-8b3d-d5732ca6683e	20	52192368	52192368	C	A	SNP	ZNF217	NM_006526.2	human	genbank	58_37c	-1	validated	missense	c.2935	p.D979Y	0.121	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
