Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AADAC	13	genome.wustl.edu	37	3	151545656	151545656	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	3	151545656	151545656	A	G	SNP	AADAC	NM_001086.2	human	genbank	58_37c	+1	reviewed	missense	c.896	p.N299S	0.000	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases	PatternScan_LIPASE_GDXG_SER,HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases	-	no_errors
ABCG1	9619	genome.wustl.edu	37	21	43645875	43645875	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	21	43645875	43645875	C	T	SNP	ABCG1	NM_004915.3	human	genbank	58_37c	+1	reviewed	missense	c.137	p.T46M	0.946	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC2_membrane,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADAM29	11086	genome.wustl.edu	37	4	175896776	175896776	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	175896776	175896776	G	T	SNP	ADAM29	NM_001130703.1	human	genbank	58_37c	+1	reviewed	missense	c.100	p.V34L	0.994	HMMPfam_Pep_M12B_propep	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AMDHD1	144193	genome.wustl.edu	37	12	96360235	96360235	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	12	96360235	96360235	G	C	SNP	AMDHD1	NM_152435.2	human	genbank	58_37c	+1	validated	missense	c.1142	p.G381A	1.000	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases	-	no_errors
ARHGAP24	83478	genome.wustl.edu	37	4	86916604	86916604	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	86916604	86916604	C	T	SNP	ARHGAP24	NM_001025616.2	human	genbank	58_37c	+1	validated	silent	c.1797	p.D599	0.044	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
CD52	1043	genome.wustl.edu	37	1	26644515	26644515	+	Missense_Mutation	SNP	C	C	T	rs141117966	byFrequency	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	1	26644515	26644515	C	T	SNP	CD52	NM_001803.2	human	genbank	58_37c	+1	validated	missense	c.7	p.R3C	0.965	NULL	NULL	-	no_errors
CHSY3	337876	genome.wustl.edu	37	5	129243980	129243980	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	129243980	129243980	C	A	SNP	CHSY3	NM_175856.4	human	genbank	58_37c	+1	validated	missense	c.1013	p.T338K	1.000	HMMPfam_CHGN	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors
CNTN1	1272	genome.wustl.edu	37	12	41352942	41352942	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	12	41352942	41352942	C	T	SNP	CNTN1	NM_001843.2	human	genbank	58_37c	+1	reviewed	silent	c.1710	p.I570	0.993	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
CSMD3	114788	genome.wustl.edu	37	8	113564934	113564934	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	8	113564934	113564934	C	T	SNP	CSMD3	NM_198123.1	human	genbank	58_37c	-1	validated	missense	c.4250	p.R1417H	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
CTSA	5476	genome.wustl.edu	37	20	44521044	44521044	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	20	44521044	44521044	A	T	SNP	CTSA	NM_000308.2	human	genbank	58_37c	+1	reviewed	missense	c.419	p.N140I	0.987	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases	HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,PatternScan_CARBOXYPEPT_SER_HIS,superfamily_alpha/beta-Hydrolases	-	no_errors
DCAF12L1	139170	genome.wustl.edu	37	X	125685532	125685532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	X	125685532	125685532	G	A	SNP	DCAF12L1	NM_178470.4	human	genbank	58_37c	-1	reviewed	missense	c.1060	p.R354W	0.945	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DCT	1638	genome.wustl.edu	37	13	95118847	95118847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	13	95118847	95118847	G	A	SNP	DCT	NM_001129889.1	human	genbank	58_37c	-1	validated	missense	c.661	p.R221W	0.992	HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,superfamily_Di-copper_centre	PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,superfamily_Di-copper_centre,PatternScan_EGF_1	-	no_errors
DMRT3	58524	genome.wustl.edu	37	9	990144	990144	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	9	990144	990144	T	A	SNP	DMRT3	NM_021240.2	human	genbank	58_37c	+1	validated	missense	c.558	p.S186R	0.862	NULL	HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,superfamily_DM_DNA_bd,HMMPfam_DMA	-	no_errors
EIF2B3	8891	genome.wustl.edu	37	1	45363093	45363093	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	1	45363093	45363093	G	A	SNP	EIF2B3	NM_020365.3	human	genbank	58_37c	-1	reviewed	missense	c.590	p.T197M	1.000	superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_NTP_transferase,superfamily_Trimeric LpxA-like enzymes,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
ENSG00000246060	0	genome.wustl.edu	37	13	45976793	45976796	+	RNA	DEL	TCTT	TCTT	-	rs10551855	byCluster	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	TCTT	TCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	13	45976793	45976796	TCTT	-	DEL	ENSG00000246060	ENST00000501822	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.001:0.005:0.011:0.013	-	-	-	no_errors
FAM149A	25854	genome.wustl.edu	37	4	187074851	187074851	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	187074851	187074851	C	A	SNP	FAM149A	NM_001006655.2	human	genbank	58_37c	+1	validated	missense	c.139	p.Q47K	0.993	NULL	NULL	-	no_errors
FMNL2	114793	genome.wustl.edu	37	2	153504368	153504368	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	2	153504368	153504368	C	T	SNP	FMNL2	NM_052905.3	human	genbank	58_37c	+1	reviewed	silent	c.3228	p.R1076	1.000	NULL	HMMSmart_FH2,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
FOXA1	3169	genome.wustl.edu	37	14	38061410	38061410	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	14	38061410	38061410	C	-	DEL	FOXA1	NM_004496.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.579	p.S194fs	0.998	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785	HMMPfam_Fork_head,HMMSmart_FH,HMMPfam_Fork_head_N,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C,superfamily_SSF46785	-	no_errors
GBP4	115361	genome.wustl.edu	37	1	89651075	89651075	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	1	89651075	89651075	T	G	SNP	GBP4	NM_052941.4	human	genbank	58_37c	-1	validated	missense	c.1785	p.E595D	0.000	superfamily_GBP	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_GBP,superfamily_SSF52540	-	no_errors
GRIK1	2897	genome.wustl.edu	37	21	31023551	31023551	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	21	31023551	31023551	G	A	SNP	GRIK1	NM_000830.3	human	genbank	58_37c	-1	reviewed	missense	c.841	p.R281W	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HEG1	57493	genome.wustl.edu	37	3	124746052	124746052	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	3	124746052	124746052	A	G	SNP	HEG1	NM_020733.1	human	genbank	58_37c	-1	validated	missense	c.910	p.S304P	0.000	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
IGSF1	3547	genome.wustl.edu	37	X	130409529	130409529	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	X	130409529	130409529	T	C	SNP	IGSF1	NM_001555.4	human	genbank	58_37c	-1	reviewed	missense	c.3107	p.Y1036C	1.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
IL10RA	3587	genome.wustl.edu	37	11	117864082	117864082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	11	117864082	117864082	G	A	SNP	IL10RA	NM_001558.3	human	genbank	58_37c	+1	reviewed	missense	c.494	p.R165Q	0.978	superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind	superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind	-	no_errors
JAKMIP1	152789	genome.wustl.edu	37	4	6083353	6083353	+	Missense_Mutation	SNP	G	G	A	rs144581908	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	6083353	6083353	G	A	SNP	JAKMIP1	NM_001099433.1	human	genbank	58_37c	-1	validated	missense	c.1084	p.R362W	0.475	NULL	NULL	-	no_errors
LOC100288216	0	genome.wustl.edu	37	6	135239889	135239889	+	Missense_Mutation	SNP	C	C	T	rs138997999	byFrequency	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	6	135239889	135239889	C	T	SNP	LOC100288216	XM_002342673.1	human	genbank	58_37c	+1	model	missense	c.328	p.R110C	0.000	NULL	NULL	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56160679	56160680	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	56160679	56160680	-	A	INS	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.953_954	p.L319fs	0.965:0.937	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56181765	56181765	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	56181765	56181765	C	G	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	missense	c.3989	p.S1330W	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9066848	9066848	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	9066848	9066848	C	T	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.20598	p.E6866	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
OR4A5	81318	genome.wustl.edu	37	11	51412164	51412164	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	11	51412164	51412164	T	G	SNP	OR4A5	NM_001005272.3	human	genbank	58_37c	-1	validated	missense	c.232	p.K78Q	0.627	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_LECTIN_LEGUME_ALPHA,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHA5	56143	genome.wustl.edu	37	5	140201481	140201481	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	140201481	140201481	G	A	SNP	PCDHA5	NM_018908.2	human	genbank	58_37c	+1	reviewed	missense	c.121	p.G41R	1.000	HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCDHB7	56129	genome.wustl.edu	37	5	140554089	140554089	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	5	140554089	140554089	C	T	SNP	PCDHB7	NM_018940.2	human	genbank	58_37c	+1	reviewed	missense	c.1673	p.S558L	0.993	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PKHD1	5314	genome.wustl.edu	37	6	51524257	51524257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	6	51524257	51524257	C	T	SNP	PKHD1	NM_138694.3	human	genbank	58_37c	-1	reviewed	missense	c.10667	p.R3556H	0.001	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors
PRKG2	5593	genome.wustl.edu	37	4	82056310	82056310	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	4	82056310	82056310	A	G	SNP	PRKG2	NM_006259.1	human	genbank	58_37c	-1	provisional	missense	c.1775	p.L592S	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors
PTPRH	5794	genome.wustl.edu	37	19	55693164	55693164	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	55693164	55693164	G	A	SNP	PTPRH	NM_002842.3	human	genbank	58_37c	-1	validated	silent	c.3306	p.Y1102	0.433	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SIPA1L3	23094	genome.wustl.edu	37	19	38631959	38631959	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	38631959	38631959	A	G	SNP	SIPA1L3	NM_015073.1	human	genbank	58_37c	+1	validated	silent	c.3279	p.L1093	0.037	NULL	HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,superfamily_SSF111347	-	no_errors
STRC	161497	genome.wustl.edu	37	15	43893206	43893206	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	15	43893206	43893206	T	C	SNP	STRC	NM_153700.2	human	genbank	58_37c	-1	reviewed	missense	c.4708	p.I1570V	0.047	NULL	NULL	-	no_errors
TNFAIP3	7128	genome.wustl.edu	37	6	138200082	138200082	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	6	138200082	138200082	C	T	SNP	TNFAIP3	NM_006290.2	human	genbank	58_37c	+1	reviewed	silent	c.1500	p.N500	0.044	HMMPfam_zf-A20,HMMSmart_ZnF_A20	HMMPfam_zf-A20,HMMSmart_ZnF_A20,HMMPfam_OTU	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19504222	19504222	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	1	19504222	19504222	C	T	SNP	UBR4	NM_020765.2	human	genbank	58_37c	-1	validated	missense	c.2370	p.M790I	1.000	NULL	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
VPS13C	54832	genome.wustl.edu	37	15	62161736	62161736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	15	62161736	62161736	C	T	SNP	VPS13C	NM_020821.1	human	genbank	58_37c	-1	validated	missense	c.10711	p.V3571I	0.996	NULL	HMMPfam_DUF1162	-	no_errors
ZDHHC17	23390	genome.wustl.edu	37	12	77208950	77208950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	12	77208950	77208950	G	A	SNP	ZDHHC17	NM_015336.2	human	genbank	58_37c	+1	validated	missense	c.568	p.G190R	1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_zf-DHHC,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ZNF559	84527	genome.wustl.edu	37	19	9453596	9453596	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	19	9453596	9453596	A	C	SNP	ZNF559	NM_032497.1	human	genbank	58_37c	+1	provisional	missense	c.1469	p.E490A	0.006	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF592	9640	genome.wustl.edu	37	15	85345429	85345429	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EU-01A-22W-A071-09	TCGA-A2-A0EU-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de30da8f-903f-428e-a63d-59625fc858a9	1583a7c5-c835-44fa-918a-1448abf6533d	15	85345429	85345429	G	A	SNP	ZNF592	NM_014630.2	human	genbank	58_37c	+1	validated	silent	c.3609	p.E1203	0.253	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
