Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARMCX2	9823	genome.wustl.edu	37	X	100911424	100911424	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	100911424	100911424	C	T	SNP	ARMCX2	NM_014782.5	human	genbank	58_37c	-1	reviewed	missense	c.1151	p.G384D	0.998	HMMPfam_DUF634,superfamily_ARM-type_fold	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors
BAT2L2	0	genome.wustl.edu	37	1	171527109	171527109	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	171527109	171527109	C	G	SNP	BAT2L2	NM_015172.3	human	genbank	58_37c	+1	validated	nonsense	c.5852	p.S1951*	0.989	NULL	HMMPfam_BAT2_N	-	no_errors
C12orf48	55010	genome.wustl.edu	37	12	102572481	102572481	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	12	102572481	102572481	G	C	SNP	C12orf48	NM_017915.2	human	genbank	58_37c	+1	predicted	missense	c.874	p.A292P	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C21orf66	94104	genome.wustl.edu	37	21	34127560	34127560	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	21	34127560	34127560	C	T	SNP	GCFC1	NM_016631.3	human	genbank	58_37c	-1	reviewed	silent	c.1488	p.S496	1.000	HMMPfam_GCFC	HMMPfam_GCFC	-	no_errors
C7orf71	285941	genome.wustl.edu	37	7	26686000	26686001	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	7	26686000	26686001	-	AA	INS	C7orf71	NM_001145531.1	human	genbank	58_37c	+1	predicted	frame_shift_ins	c.351_352	p.A118fs	0.769:0.680	NULL	NULL	-	no_errors
CFHR4	10877	genome.wustl.edu	37	1	196884227	196884227	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	196884227	196884227	C	A	SNP	CFHR4	NM_006684.2	human	genbank	58_37c	+1	validated	missense	c.758	p.T253K	0.000	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
CLIP4	79745	genome.wustl.edu	37	2	29366667	29366667	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	2	29366667	29366667	C	A	SNP	CLIP4	NM_024692.4	human	genbank	58_37c	+1	validated	silent	c.741	p.I247	1.000	superfamily_Ankyrin repeat	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_Cap-Gly domain	-	no_errors
COL6A3	1293	genome.wustl.edu	37	2	238290029	238290029	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	2	238290029	238290029	C	A	SNP	COL6A3	NM_004369.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1426	p.E476*	1.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
CROCCL1	84809	genome.wustl.edu	37	1	16955128	16955128	+	RNA	SNP	A	A	G	rs1762949	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	16955128	16955128	A	G	SNP	CROCCL1	NR_026752.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.562	-	-	-	pseudogene
DGKI	9162	genome.wustl.edu	37	7	137092668	137092668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	7	137092668	137092668	G	A	SNP	DGKI	NM_004717.2	human	genbank	58_37c	-1	reviewed	missense	c.2897	p.A966V	1.000	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_DAGK_acc,HMMSmart_DAGKa,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1	-	no_errors
ELTD1	64123	genome.wustl.edu	37	1	79358816	79358816	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	79358816	79358816	A	G	SNP	ELTD1	NM_022159.3	human	genbank	58_37c	-1	validated	missense	c.1808	p.L603S	0.989	HMMPfam_7tm_2	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,HMMSmart_EGF_CA,HMMSmart_EGF,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_G_PROTEIN_RECEP_F2_2,PatternScan_EGF_CA,PatternScan_EF_HAND_1,superfamily_SSF57196	-	no_errors
FAM9B	171483	genome.wustl.edu	37	X	8998340	8998340	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	8998340	8998340	G	A	SNP	FAM9B	NM_205849.2	human	genbank	58_37c	-1	validated	silent	c.243	p.N81	0.047	HMMPfam_Cor1	HMMPfam_Cor1	-	no_errors
FAM9B	171483	genome.wustl.edu	37	X	9000382	9000382	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	9000382	9000382	C	A	SNP	FAM9B	NM_205849.2	human	genbank	58_37c	-1	validated	missense	c.149	p.G50V	0.023	NULL	HMMPfam_Cor1	-	no_errors
GRIN3A	116443	genome.wustl.edu	37	9	104432629	104432629	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	9	104432629	104432629	C	A	SNP	GRIN3A	NM_133445.2	human	genbank	58_37c	-1	reviewed	missense	c.2065	p.A689S	1.000	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
HIRA	7290	genome.wustl.edu	37	22	19348811	19348811	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	22	19348811	19348811	T	C	SNP	HIRA	NM_003325.3	human	genbank	58_37c	-1	reviewed	silent	c.2034	p.A678	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_Hira,HMMPfam_HIRA_B,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
KIAA0467	23334	genome.wustl.edu	37	1	43914050	43914050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	43914050	43914050	G	A	SNP	KIAA0467	NM_015284.2	human	genbank	58_37c	+1	predicted	silent	c.7167	p.P2389	0.821	NULL	NULL	-	no_errors
KIAA1045	23349	genome.wustl.edu	37	9	34976648	34976648	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	9	34976648	34976648	G	T	SNP	KIAA1045	NM_015297.1	human	genbank	58_37c	+1	validated	missense	c.760	p.A254S	1.000	NULL	PatternScan_ZF_PHD_1	-	no_errors
KLHL30	377007	genome.wustl.edu	37	2	239049602	239049602	+	Silent	SNP	C	C	T	rs147827992	by1000genomes	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	2	239049602	239049602	C	T	SNP	KLHL30	NM_198582.3	human	genbank	58_37c	+1	validated	silent	c.153	p.S51	1.000	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LHFPL4	375323	genome.wustl.edu	37	3	9547779	9547779	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	3	9547779	9547779	G	T	SNP	LHFPL4	NM_198560.2	human	genbank	58_37c	-1	reviewed	nonsense	c.515	p.S172*	1.000	HMMPfam_L_HGMIC_fpl	HMMPfam_L_HGMIC_fpl	-	no_errors
LOC100129518	0	genome.wustl.edu	37	6	160183182	160183182	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	6	160183182	160183182	G	C	SNP	LOC100129518	XR_079492.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
MLANA	2315	genome.wustl.edu	37	9	5892543	5892543	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	9	5892543	5892543	G	A	SNP	MLANA	NM_005511.1	human	genbank	58_37c	+1	validated	silent	c.69	p.T23	0.038	NULL	NULL	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9091513	9091513	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	19	9091513	9091513	G	T	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.302	p.T101N	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
NETO1	81832	genome.wustl.edu	37	18	70417577	70417577	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	18	70417577	70417577	G	T	SNP	NETO1	NM_138966.2	human	genbank	58_37c	-1	reviewed	silent	c.1261	p.R421	1.000	NULL	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
NRXN2	9379	genome.wustl.edu	37	11	64374729	64374729	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	11	64374729	64374729	G	A	SNP	NRXN2	NM_015080.2	human	genbank	58_37c	-1	reviewed	missense	c.5078	p.P1693L	0.958	NULL	HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
ODZ1	10178	genome.wustl.edu	37	X	123615786	123615786	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	123615786	123615786	C	A	SNP	ODZ1	NM_014253.3	human	genbank	58_37c	-1	reviewed	missense	c.3724	p.A1242S	1.000	superfamily_SSF101898	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196	-	no_errors
OR8H2	390151	genome.wustl.edu	37	11	55873220	55873220	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	11	55873220	55873220	G	T	SNP	OR8H2	NM_001005200.1	human	genbank	58_37c	+1	provisional	missense	c.702	p.K234N	0.031	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHB6	56130	genome.wustl.edu	37	5	140531761	140531761	+	Silent	SNP	T	G	G	rs17844442	byCluster;by1000genomes	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	5	140531761	140531761	T	G	SNP	PCDHB6	NM_018939.2	human	genbank	58_37c	+1	reviewed	silent	c.1923	p.L641	0.997	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PGAP1	80055	genome.wustl.edu	37	2	197709278	197709278	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	2	197709278	197709278	G	A	SNP	PGAP1	NM_024989.3	human	genbank	58_37c	-1	validated	silent	c.2307	p.S769	0.996	NULL	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases	-	no_errors
PHRF1	57661	genome.wustl.edu	37	11	607853	607853	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	11	607853	607853	G	C	SNP	PHRF1	NM_020901.2	human	genbank	58_37c	+1	validated	silent	c.2394	p.T798	0.061	NULL	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF57850	-	no_errors
PLCD3	113026	genome.wustl.edu	37	17	43198282	43198282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	17	43198282	43198282	C	T	SNP	PLCD3	ENST00000322765	human	ensembl	58_37c	-1	known	missense	c.541	p.E181K	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
POU4F3	5459	genome.wustl.edu	37	5	145718682	145718682	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	5	145718682	145718682	G	C	SNP	POU4F3	NM_002700.2	human	genbank	58_37c	+1	reviewed	missense	c.7	p.A3P	0.999	NULL	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,superfamily_Lambda_like_DNA,PatternScan_HOMEOBOX_1	-	no_errors
PPM1E	22843	genome.wustl.edu	37	17	57057757	57057757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	17	57057757	57057757	C	T	SNP	PPM1E	NM_014906.3	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.R545C	1.000	NULL	PatternScan_PP2C,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors
SCNN1A	6337	genome.wustl.edu	37	12	6458148	6458148	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	12	6458148	6458148	C	T	SNP	SCNN1A	NM_001038.5	human	genbank	58_37c	-1	reviewed	silent	c.1521	p.S507	0.005	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
SIM1	6492	genome.wustl.edu	37	6	100841453	100841453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	6	100841453	100841453	C	T	SNP	SIM1	NM_005068.2	human	genbank	58_37c	-1	reviewed	missense	c.1480	p.A494T	0.950	HMMPfam_SIM_C	HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,HMMPfam_SIM_C,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785	-	no_errors
SIRPB1	10326	genome.wustl.edu	37	20	1559200	1559200	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	20	1559200	1559200	C	A	SNP	SIRPB1	NM_006065.3	human	genbank	58_37c	-1	reviewed	missense	c.217	p.A73S	0.003	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMPfam_C1-set,HMMSmart_SM00407,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
SP9	0	genome.wustl.edu	37	2	175202011	175202011	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	2	175202011	175202011	C	T	SNP	SP9	NM_001145250.1	human	genbank	58_37c	+1	provisional	missense	c.1198	p.R400C	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577051	7577079	+	Frame_Shift_Del	DEL	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	-	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	TGAGGCTCCCCTTTCTTGCGGAGATTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	17	7577051	7577079	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.887_859	p.E287fs	0.000:0.000:0.000:0.000:0.001:0.001:0.008:0.015:0.006:0.008:0.324:0.411:0.904:0.987:0.998:1.000:1.000:1.000:0.995:1.000:0.998:0.995:0.983:0.990:0.994:0.991:0.910:1.000:1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
USP9X	8239	genome.wustl.edu	37	X	41075185	41075185	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	X	41075185	41075185	T	C	SNP	USP9X	NM_001039590.2	human	genbank	58_37c	+1	reviewed	silent	c.5365	p.L1789	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
YEATS2	55689	genome.wustl.edu	37	3	183442226	183442226	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	3	183442226	183442226	G	C	SNP	YEATS2	NM_018023.4	human	genbank	58_37c	+1	validated	missense	c.557	p.G186A	0.807	NULL	HMMPfam_YEATS	-	no_errors
ZFYVE9	9372	genome.wustl.edu	37	1	52811772	52811772	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T3-01A-21D-A10Y-09	TCGA-A2-A0T3-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ca029bb-3b3a-48ec-8ade-5591e8e8629f	2c1a2795-e195-4f8d-a062-373aab5c50fc	1	52811772	52811772	C	T	SNP	ZFYVE9	NM_004799.2	human	genbank	58_37c	+1	reviewed	missense	c.4157	p.S1386L	0.998	NULL	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger	-	no_errors
