Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANKRD12	0	genome.wustl.edu	37	18	9255050	9255051	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	18	9255050	9255051	AA	-	DEL	ANKRD12	NM_015208.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.1785_1786	p.S596fs	0.892:1.000	superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
DUS4L	0	genome.wustl.edu	37	7	107215657	107215657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	7	107215657	107215657	G	T	SNP	DUS4L	ENST00000422290	human	ensembl	58_37c	+1	known	missense	c.263	p.G88V	0.999	NULL	HMMPfam_Dus,superfamily_FMN-linked oxidoreductases	-	no_errors
EHMT1	0	genome.wustl.edu	37	9	140710464	140710464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	9	140710464	140710464	G	A	SNP	EHMT1	NM_024757.4	human	genbank	58_37c	+1	reviewed	missense	c.3305	p.R1102H	0.912	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000210174	0	genome.wustl.edu	37	MT	10412	10412	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	MT	10412	10412	T	C	SNP	ENSG00000210174	ENST00000387439	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
EPDR1	0	genome.wustl.edu	37	7	37960263	37960275	+	Frame_Shift_Del	DEL	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	AGGCAGTGGCAGC	AGGCAGTGGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	7	37960263	37960275	AGGCAGTGGCAGC	-	DEL	EPDR1	NM_017549.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.82_94	p.Q31fs	0.174:0.169:0.163:0.158:0.152:0.146:0.139:0.133:0.126:0.118:0.111:0.103:0.095	NULL	HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2	-	no_errors
FAM179B	0	genome.wustl.edu	37	14	45465069	45465069	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	14	45465069	45465069	G	T	SNP	FAM179B	NM_015091.2	human	genbank	58_37c	+1	validated	missense	c.2167	p.D723Y	0.999	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
FBXO15	0	genome.wustl.edu	37	18	71797870	71797870	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	18	71797870	71797870	G	C	SNP	FBXO15	NM_001142958.1	human	genbank	58_37c	-1	reviewed	nonsense	c.356	p.S119*	0.955	HMMPfam_F-box,superfamily_SSF81383	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383	-	no_errors
FLI1	0	genome.wustl.edu	37	11	128628222	128628222	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	11	128628222	128628222	G	A	SNP	FLI1	NM_002017.3	human	genbank	58_37c	+1	validated	splice_site	c.230+1	e2+1	1.000	-	-	-	no_errors
FOXA1	0	genome.wustl.edu	37	14	38060747	38060748	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	14	38060747	38060748	-	T	INS	FOXA1	NM_004496.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1242_1241	p.L415fs	1.000:1.000	HMMPfam_HNF_C	HMMPfam_Fork_head,HMMSmart_FH,HMMPfam_Fork_head_N,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C,superfamily_SSF46785	-	no_errors
IFNA10	0	genome.wustl.edu	37	9	21206569	21206569	+	Silent	SNP	C	C	A	rs148033880	byFrequency	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	9	21206569	21206569	C	A	SNP	IFNA10	NM_002171.1	human	genbank	58_37c	-1	provisional	silent	c.528	p.S176	0.000	HMMPfam_Interferon,superfamily_4-helical cytokines	HMMPfam_Interferon,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D,superfamily_4-helical cytokines	-	no_errors
LAMA5	0	genome.wustl.edu	37	20	60937537	60937537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	20	60937537	60937537	G	A	SNP	LAMA5	NM_005560.3	human	genbank	58_37c	-1	reviewed	silent	c.369	p.G123	1.000	HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like	HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LOC100292575	0	genome.wustl.edu	37	X	601884	601884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	X	601884	601884	C	T	SNP	LOC100292575	XM_002346341.1	human	genbank	58_37c	-1	model	missense	c.953	p.R318K	0.003	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC642131	0	genome.wustl.edu	37	15	22472908	22472910	+	In_Frame_Del	DEL	CCT	CCT	-	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	15	22472908	22472910	CCT	-	DEL	LOC642131	XM_001716834.1	human	genbank	58_37c	-1	model	in_frame_del	c.384_382	p.R128in_frame_del	0.562:0.889:0.997	HMMSmart_SM00409	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
LOC642131	0	genome.wustl.edu	37	15	22472913	22472947	+	Frame_Shift_Del	DEL	CTGTGTCTCTCGCACAGTAATACACGGCCCTGTCC	CTGTGTCTCTCGCACAGTAATACACGGCCCTGTCC	-	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	CTGTGTCTCTCGCACAGTAATACACGGCCCTGTCC	CTGTGTCTCTCGCACAGTAATACACGGCCCTGTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	15	22472913	22472947	CTGTGTCTCTCGCACAGTAATACACGGCCCTGTCC	-	DEL	LOC642131	XM_001716834.1	human	genbank	58_37c	-1	model	frame_shift_del	c.379_345	p.D116fs	1.000:1.000:1.000:1.000:0.994:0.326:0.322:0.353:0.336:0.283:0.107:0.701:0.991:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.999:0.884:0.946:1.000:1.000:1.000:1.000:0.993	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123793	16123793	+	RNA	SNP	G	G	A	rs11703326	byHapMap	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	22	16123793	16123793	G	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.007	-	-	-	no_errors
LUC7L2	0	genome.wustl.edu	37	7	139083442	139083445	+	Frame_Shift_Del	DEL	ATGT	ATGT	-	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	ATGT	ATGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	7	139083442	139083445	ATGT	-	DEL	LUC7L2	NM_016019.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.254_255	p.D85fs	1.000:1.000	HMMPfam_LUC7	HMMPfam_LUC7	-	no_errors
MAFIP	0	genome.wustl.edu	37	4	53692	53693	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	4	53692	53693	-	G	INS	MAFIP	XM_002344449.1	human	genbank	58_37c	-1	model	frame_shift_ins	c.1292_1291	p.R431fs	0.005:0.004	NULL	PatternScan_IG_MHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MATN2	0	genome.wustl.edu	37	8	99039661	99039661	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	8	99039661	99039661	A	C	SNP	MATN2	NM_002380.3	human	genbank	58_37c	+1	reviewed	missense	c.1960	p.I654L	0.004	HMMSmart_SM00327,superfamily_vWA-like,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
MCC	0	genome.wustl.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	5	112824048	112824049	-	GCC	INS	MCC	NM_001085377.1	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.64_63	p.21in_frame_insG	0.854:0.894	NULL	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_MCC-bdg_PDZ,superfamily_EF-hand	-	no_errors
MIR635	0	genome.wustl.edu	37	17	66420616	66420616	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	17	66420616	66420616	C	A	SNP	MIR635	ENST00000384830	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
MYB	0	genome.wustl.edu	37	6	135511266	135511266	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	6	135511266	135511266	T	C	SNP	MYB	NM_001130173.1	human	genbank	58_37c	+1	reviewed	missense	c.308	p.V103A	1.000	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors
NUP107	0	genome.wustl.edu	37	12	69135710	69135710	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	12	69135710	69135710	T	C	SNP	NUP107	NM_020401.2	human	genbank	58_37c	+1	reviewed	missense	c.2620	p.C874R	0.997	HMMPfam_Nup84_Nup100	HMMPfam_Nup84_Nup100	-	no_errors
OR6X1	0	genome.wustl.edu	37	11	123624554	123624554	+	Nonsense_Mutation	SNP	G	G	A	rs143796976	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	11	123624554	123624554	G	A	SNP	OR6X1	NM_001005188.1	human	genbank	58_37c	-1	provisional	nonsense	c.673	p.R225*	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OSBPL9	0	genome.wustl.edu	37	1	52227617	52227617	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	1	52227617	52227617	A	T	SNP	OSBPL9	NM_148909.1	human	genbank	58_37c	+1	reviewed	missense	c.782	p.H261L	1.000	NULL	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_PH,PatternScan_OSBP,superfamily_SSF50729	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLD6	0	genome.wustl.edu	37	17	17106185	17106185	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	17	17106185	17106185	G	A	SNP	PLD6	NM_178836.3	human	genbank	58_37c	-1	validated	missense	c.655	p.P219S	0.054	NULL	HMMPfam_PLDc,HMMSmart_PLDc,superfamily_SSF56024	-	no_errors
RBM20	0	genome.wustl.edu	37	10	112583260	112583260	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	10	112583260	112583260	G	T	SNP	RBM20	NM_001134363.1	human	genbank	58_37c	+1	reviewed	missense	c.3339	p.M1113I	0.821	NULL	HMMSmart_RRM,HMMSmart_ZnF_U1,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF54928,superfamily_SSF57667	-	no_errors
RHOBTB1	0	genome.wustl.edu	37	10	62671216	62671216	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	10	62671216	62671216	G	A	SNP	RHOBTB1	NM_014836.4	human	genbank	58_37c	-1	reviewed	missense	c.85	p.R29C	1.000	HMMSmart_RHO,superfamily_SSF52540	HMMSmart_BTB,HMMSmart_RHO,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
SCN9A	0	genome.wustl.edu	37	2	167141168	167141171	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	ACAA	ACAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	2	167141168	167141171	ACAA	-	DEL	SCN9A	NM_002977.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1769_1766	p.F589fs	1.000:0.499:0.383:1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SEC24A	0	genome.wustl.edu	37	5	133996823	133996823	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	5	133996823	133996823	G	A	SNP	SEC24A	NM_021982.1	human	genbank	58_37c	+1	validated	missense	c.112	p.A38T	0.648	NULL	HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SLC6A14	0	genome.wustl.edu	37	X	115574821	115574821	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	X	115574821	115574821	T	C	SNP	SLC6A14	NM_007231.3	human	genbank	58_37c	+1	reviewed	silent	c.519	p.C173	0.998	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
SULT1C3	0	genome.wustl.edu	37	2	108875465	108875486	+	Frame_Shift_Del	DEL	AAACTTGGTCAGGTGATGTTAT	AAACTTGGTCAGGTGATGTTAT	-	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	AAACTTGGTCAGGTGATGTTAT	AAACTTGGTCAGGTGATGTTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	2	108875465	108875486	AAACTTGGTCAGGTGATGTTAT	-	DEL	SULT1C3	ENST00000376700	human	ensembl	58_37c	+1	known	frame_shift_del	c.665_686	p.W224fs	0.420:0.382:0.018:0.002:0.000:0.000:0.001:0.000:0.000:0.000:0.002:0.395:0.396:0.268:0.312:0.255:0.004:0.004:0.004:0.002:0.004:0.025	HMMPfam_Sulfotransfer_1,superfamily_SSF52540	HMMPfam_Sulfotransfer_1,superfamily_SSF52540	-	no_errors
TTYH1	0	genome.wustl.edu	37	19	54941109	54941109	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	19	54941109	54941109	C	G	SNP	TTYH1	NM_001005367.1	human	genbank	58_37c	+1	reviewed	missense	c.857	p.T286S	1.000	HMMPfam_Tweety	HMMPfam_Tweety	-	no_errors
ULK3	0	genome.wustl.edu	37	15	75131031	75131031	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	15	75131031	75131031	T	C	SNP	ULK3	NM_001099436.1	human	genbank	58_37c	-1	validated	missense	c.1055	p.N352S	1.000	HMMSmart_SM00745	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_MIT,HMMSmart_SM00745,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
VSIG1	0	genome.wustl.edu	37	X	107310235	107310235	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	X	107310235	107310235	G	T	SNP	VSIG1	NM_182607.4	human	genbank	58_37c	+1	reviewed	missense	c.283	p.D95Y	0.000	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
WASH2P	0	genome.wustl.edu	37	2	114341323	114341323	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	2	114341323	114341323	G	A	SNP	WASH2P	NR_024077.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.003	-	-	-	pseudogene
ZNF879	0	genome.wustl.edu	37	5	178459857	178459857	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A1FZ-01A-51D-A17G-09	TCGA-A2-A1FZ-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0f7038bb-fd25-468e-8bd9-dcd4312d13cb	d8d7bb7f-6f0a-4eb4-aa04-61b5bffb24e1	5	178459857	178459857	T	A	SNP	ZNF879	NM_001136116.1	human	genbank	58_37c	+1	provisional	missense	c.908	p.L303H	0.849	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
