Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NPHP4	261734	genome.wustl.edu	37	1	6046286	6046286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_015102.2	-1	reviewed	p.R22C	0.912	121	0%	186	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CD101	9398	genome.wustl.edu	37	1	117552822	117552822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_004258.3	+1	validated	p.G132R	0.996	78	0%	98	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
POGZ	23126	genome.wustl.edu	37	1	151413464	151413465	+	In_Frame_Ins	INS	-	-	GCT	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_015100.2	-1	reviewed	p.74in_frame_insS	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LPGAT1	9926	genome.wustl.edu	37	1	211924348	211924348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_014873.2	-1	validated	p.R306W	0.892	172	0%	162	32.1%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17697644	17697644	+	Missense_Mutation	SNP	G	G	A	rs187028078	by1000genomes	TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001099218.2	-1	provisional	p.P680L	0.691	52	0%	37	21.6%	0	-	benign(0.188)	deleterious(0)	neutral(0.462)	NULL
NRXN1	9378	genome.wustl.edu	37	2	50779958	50779958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001135659.1	-1	reviewed	p.R549H	1.000	308	0%	297	29.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
LOC100133109	100133109	genome.wustl.edu	37	2	175584672	175584672	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	XM_001716442.2	-1	model	p.T102	1.000	61	0%	62	27.4%	98	0%	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196736991	196736991	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_018897.2	-1	validated	p.R2206fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
PIKFYVE	200576	genome.wustl.edu	37	2	209166994	209166994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_015040.3	+1	reviewed	p.M413V	0.870	184	0%	189	25.4%	0	-	benign(0.025)	deleterious(0.02)	neutral(0.384)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
SLC19A3	80704	genome.wustl.edu	37	2	228563569	228563569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_025243.3	-1	reviewed	p.A288T	0.941	86	0%	86	40.7%	0	-	possibly_damaging(0.819)	tolerated(0.08)	deleterious(0.609)	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
UBE2E1	7324	genome.wustl.edu	37	3	23930625	23930625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_003341.3	+1	reviewed	p.Y120C	1.000	328	0%	319	31.7%	25	32%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UQ_con,HMMSmart_SM00212,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBC-like
EPHA3	2042	genome.wustl.edu	37	3	89456440	89456440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_005233.5	+1	reviewed	p.S539N	0.990	297	0%	260	23.8%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916643	178916666	+	In_Frame_Del	DEL	GTGGGGCATCCACTTGATGCCCCC	GTGGGGCATCCACTTGATGCCCCC	-	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	GTGGGGCATCCACTTGATGCCCCC	GTGGGGCATCCACTTGATGCCCCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_006218.2	+1	reviewed	p.WGIHLMPP11in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916957	178916957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_006218.2	+1	reviewed	p.R115L	1.000	76	0%	47	40.4%	0	-	possibly_damaging(0.948)	tolerated(0.31)	neutral(0.418)	superfamily_SSF54236
DOCK2	1794	genome.wustl.edu	37	5	169508861	169508861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_004946.2	+1	validated	p.V1768A	0.061	85	0%	124	22.6%	0	-	benign(0.178)	deleterious(0.04)	neutral(0.365)	NULL
FGFR4	2264	genome.wustl.edu	37	5	176517136	176517137	+	Frame_Shift_Ins	INS	-	-	GTGT	rs111413202		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	ENST00000377207	+1	known	p.V27fs	0.008:0.012	-	-	-	-	-	-	-	-	-	NULL
PHACTR1	221692	genome.wustl.edu	37	6	13228267	13228267	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	ENST00000415087	+1	known	p.T237M	0.006	142	0%	139	14.4%	0	-	-	-	-	NULL
NOTCH4	4855	genome.wustl.edu	37	6	32191659	32191661	+	In_Frame_Del	DEL	AGC	AGC	-	rs72110219		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_004557.3	-1	reviewed	p.L16in_frame_del	0.003:0.005:0.005	-	-	-	-	-	-	-	-	-	NULL
C6orf1	221491	genome.wustl.edu	37	6	34214372	34214372	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001008703.1	-1	validated	p.L133	0.000	53	0%	61	24.6%	8	50%	-	-	-	NULL
RIMS1	22999	genome.wustl.edu	37	6	72960118	72960118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_014989.4	+1	reviewed	p.R776H	1.000	123	0%	133	35.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
GPRC6A	222545	genome.wustl.edu	37	6	117127588	117127588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_148963.2	-1	validated	p.R427Q	0.790	84	0%	63	31.7%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
UTRN	7402	genome.wustl.edu	37	6	145069633	145069633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_007124.2	+1	reviewed	p.H2731N	1.000	102	0%	118	25.4%	1	0%	possibly_damaging(0.95)	tolerated(0.09)	deleterious(0.690)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
C6orf211	79624	genome.wustl.edu	37	6	151789718	151789718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_024573.1	+1	predicted	p.D267N	0.981	235	0%	232	28.4%	6	33.3%	benign(0.025)	tolerated(0.2)	neutral(0.050)	HMMPfam_DUF89,superfamily_DUF89
THSD7A	221981	genome.wustl.edu	37	7	11513968	11513968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_015204.2	-1	validated	p.P749T	1.000	139	0%	133	11.3%	1	0%	probably_damaging(1)	tolerated(0.76)	deleterious(0.501)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PPP1R3A	5506	genome.wustl.edu	37	7	113519690	113519690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_002711.3	-1	reviewed	p.R486Q	0.000	74	0%	49	20.4%	0	-	possibly_damaging(0.904)	deleterious(0.02)	deleterious(0.742)	NULL
CADPS2	93664	genome.wustl.edu	37	7	122261573	122261573	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	ENST00000397721	-1	known	p.A4V	1.000	165	0%	132	32.6%	0	-	-	-	-	NULL
PTK2B	2185	genome.wustl.edu	37	8	27308361	27308361	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_004103.3	+1	reviewed	p.Q812	1.000	150	0%	155	25.8%	3	0%	-	-	-	NULL
IL2RA	3559	genome.wustl.edu	37	10	6067886	6067886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_000417.2	-1	reviewed	p.R56H	0.937	200	0%	243	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_CCP
ARID5B	84159	genome.wustl.edu	37	10	63845543	63845543	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_032199.2	+1	validated	p.S428fs	1.000	-	-	-	-	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89685315	89685318	+	Splice_Site	DEL	GTAA	GTAA	-	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	GTAA	GTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	ENST00000371953	+1	known	e3+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	ENST00000371953	+1	known	p.R130G	1.000	184	0%	229	28.8%	17	17.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
HPS1	3257	genome.wustl.edu	37	10	100195417	100195417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_000195.2	-1	reviewed	p.G77V	0.002	107	0%	102	23.5%	10	40%	possibly_damaging(0.885)	deleterious(0)	deleterious(0.790)	NULL
BEST1	7439	genome.wustl.edu	37	11	61729876	61729876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001139443.1	+1	reviewed	p.R357K	0.975	84	0%	102	23.5%	0	-	benign(0)	tolerated(1)	-	NULL
C11orf75	56935	genome.wustl.edu	37	11	93212301	93212301	+	Missense_Mutation	SNP	G	G	A	rs140592708	by1000genomes	TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_020179.2	-1	validated	p.R19W	1.000	223	0%	273	21.6%	0	-	unknown(0)	-	-	NULL
BCL9L	283149	genome.wustl.edu	37	11	118769751	118769751	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_182557.2	-1	validated	p.D1291	0.006	33	0%	47	36.2%	0	-	-	-	-	NULL
CLEC4A	50856	genome.wustl.edu	37	12	8290774	8290774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_016184.3	+1	reviewed	p.R202H	0.002	155	0%	268	30.2%	1	100%	probably_damaging(0.982)	tolerated(0.13)	deleterious(0.679)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
GRIN2B	2904	genome.wustl.edu	37	12	13724779	13724779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_000834.3	-1	reviewed	p.N710K	1.000	292	0%	344	27%	0	-	benign(0.249)	deleterious(0.01)	neutral(0.431)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
HOXC13	3229	genome.wustl.edu	37	12	54332733	54332734	+	In_Frame_Ins	INS	-	-	TTA	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_017410.2	+1	reviewed	p.16in_frame_insI	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RNF41	10193	genome.wustl.edu	37	12	56604261	56604261	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_005785.2	-1	reviewed	p.T61R	1.000	56	0%	83	31.3%	5	40%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_RING/U-box
LRP1	4035	genome.wustl.edu	37	12	57588868	57588868	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_002332.2	+1	reviewed	p.D2764	0.988	100	0%	119	31.1%	1	100%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMSmart_SM00181,superfamily_YWTD domain
FGD6	55785	genome.wustl.edu	37	12	95546729	95546729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_018351.3	-1	validated	p.A876V	1.000	339	0%	380	28.9%	0	-	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
NBEA	26960	genome.wustl.edu	37	13	36229790	36229790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_015678.4	+1	validated	p.G2735W	1.000	234	0%	229	25.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CYSLTR2	57105	genome.wustl.edu	37	13	49281768	49281768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_020377.2	+1	reviewed	p.T272M	0.000	227	0%	235	29.8%	1	0%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ATP7B	540	genome.wustl.edu	37	13	52532604	52532604	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_000053.2	-1	reviewed	p.I733S	1.000	109	0%	137	26.3%	1	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
GAS6	2621	genome.wustl.edu	37	13	114531567	114531567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_000820.2	-1	reviewed	p.L421M	1.000	114	0%	143	28%	15	26.6%	possibly_damaging(0.874)	deleterious(0.01)	deleterious(0.745)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
SSTR1	6751	genome.wustl.edu	37	14	38679208	38679208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001049.2	+1	reviewed	p.T205K	1.000	96	0%	131	32.8%	0	-	benign(0.146)	tolerated(0.32)	neutral(0.037)	HMMPfam_7tm_1,superfamily_SSF81321
NAA30	122830	genome.wustl.edu	37	14	57876098	57876098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001011713.2	+1	validated	p.V318A	1.000	106	0.9%	107	35.5%	1	100%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
SPTB	6710	genome.wustl.edu	37	14	65234392	65234392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001024858.2	-1	reviewed	p.K2070E	1.000	69	0%	80	31.2%	0	-	benign(0.158)	deleterious(0.01)	neutral(0.420)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
CCPG1	9236	genome.wustl.edu	37	15	55652689	55652689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_004748.3	-1	validated	p.R428W	0.182	227	0.4%	307	27.7%	5	20%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
NR2E3	10002	genome.wustl.edu	37	15	72106359	72106359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_014249.2	+1	reviewed	p.R334Q	0.732	41	0%	58	22.4%	1	100%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
IREB2	3658	genome.wustl.edu	37	15	78770699	78770699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_004136.2	+1	validated	p.R419Q	1.000	179	0%	206	24.8%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
MYH11	4629	genome.wustl.edu	37	16	15847282	15847282	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001040114.1	-1	reviewed	p.S618	0.034	188	0%	262	33.2%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
KAT8	84148	genome.wustl.edu	37	16	31138400	31138400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_182958.2	+1	validated	p.E169D	0.832	103	0%	129	33.3%	9	55.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ITGAX	3687	genome.wustl.edu	37	16	31391380	31391380	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_000887.3	+1	reviewed	p.P1018	0.022	49	0%	62	38.7%	0	-	-	-	-	HMMPfam_Integrin_alpha2
ZNF423	23090	genome.wustl.edu	37	16	49672044	49672044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_015069.2	-1	reviewed	p.C340F	1.000	71	0%	98	27.6%	0	-	probably_damaging(0.98)	tolerated(0.08)	deleterious(0.724)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CMTM1	113540	genome.wustl.edu	37	16	66603944	66603945	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_052999.3	+1	reviewed	p.Y181fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_MARVEL
KLHDC4	54758	genome.wustl.edu	37	16	87743067	87743067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_017566.3	-1	validated	p.D417E	0.000	15	0%	27	22.2%	2	0%	benign(0)	tolerated(1)	-	NULL
PRPF8	10594	genome.wustl.edu	37	17	1563737	1563737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_006445.3	-1	reviewed	p.D1592Y	1.000	70	0%	99	33.3%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_U6-snRNA_bdg
WDR81	124997	genome.wustl.edu	37	17	1639511	1639511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	ENST00000409644	+1	known	p.K1835R	1.000	34	0%	56	33.9%	0	-	possibly_damaging(0.93)	tolerated(0.52)	neutral(0.385)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GPR179	440435	genome.wustl.edu	37	17	36482664	36482664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001004334.2	-1	validated	p.R2263Q	0.000	75	0%	99	39.4%	0	-	benign(0)	tolerated(1)	-	NULL
MSL1	339287	genome.wustl.edu	37	17	38289317	38289317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001012241.1	+1	validated	p.S241L	0.984	147	0%	179	29.1%	4	50%	possibly_damaging(0.85)	tolerated(0.78)	neutral(0.328)	NULL
PTRF	284119	genome.wustl.edu	37	17	40574863	40574863	+	Missense_Mutation	SNP	C	C	A	rs61729284		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_012232.5	-1	reviewed	p.A85S	1.000	24	0%	41	22%	1	0%	benign(0.026)	tolerated(0.76)	neutral(0.002)	NULL
ARHGAP27	201176	genome.wustl.edu	37	17	43475373	43475373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_199282.2	-1	validated	p.D254G	1.000	72	0%	107	27.1%	3	66.6%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
IGF2BP1	10642	genome.wustl.edu	37	17	47102991	47102991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_006546.3	+1	reviewed	p.I83T	1.000	74	0%	109	31.2%	0	-	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SPOP	8405	genome.wustl.edu	37	17	47699375	47699375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001007226.1	-1	reviewed	p.R45W	1.000	109	0%	130	18.5%	8	50%	probably_damaging(0.997)	tolerated(0.15)	deleterious(0.707)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
RNF43	54894	genome.wustl.edu	37	17	56439944	56439944	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_017763.4	-1	validated	p.S216	0.017	51	0%	44	27.3%	0	-	-	-	-	NULL
TNRC6C	57690	genome.wustl.edu	37	17	76071243	76071243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001142640.1	+1	validated	p.V979M	0.989	82	0%	135	26.7%	1	0%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
CETN1	1068	genome.wustl.edu	37	18	580703	580703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_004066.1	+1	reviewed	p.E99K	0.994	52	0%	76	28.9%	0	-	benign(0.37)	tolerated(0.07)	neutral(0.436)	superfamily_EF-hand
DSG1	1828	genome.wustl.edu	37	18	28906898	28906898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001942.2	+1	reviewed	p.R49H	0.996	47	0%	75	21.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Cadherin-like
NACC1	112939	genome.wustl.edu	37	19	13246838	13246838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_052876.2	+1	validated	p.D273N	1.000	107	0%	125	27.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AP1M1	8907	genome.wustl.edu	37	19	16338999	16338999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001130524.1	+1	reviewed	p.R302C	1.000	77	0%	96	26%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adap_comp_sub,superfamily_AP50
HIPK4	147746	genome.wustl.edu	37	19	40886962	40886962	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_144685.3	-1	provisional	p.A312	0.041	15	0%	20	40%	0	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RPS19	6223	genome.wustl.edu	37	19	42373817	42373817	+	Silent	SNP	C	C	G	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001022.3	+1	reviewed	p.A135	0.595	52	0%	61	32.8%	1168	44%	-	-	-	HMMPfam_Ribosomal_S19e
PSG1	5669	genome.wustl.edu	37	19	43375971	43375971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_006905.2	-1	validated	p.I219M	0.000	136	0%	282	24.8%	0	-	benign(0.045)	tolerated(0.11)	neutral(0.274)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF480	147657	genome.wustl.edu	37	19	52825948	52825948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_144684.2	+1	validated	p.P482L	0.840	110	0%	176	33%	1	0%	benign(0.303)	deleterious(0)	deleterious(0.538)	superfamily_C2H2 and C2HC zinc fingers
ZNF419	79744	genome.wustl.edu	37	19	58005429	58005429	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001098491.1	+1	validated	p.R503*	0.010	72	0%	122	41.8%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SAMHD1	25939	genome.wustl.edu	37	20	35555596	35555598	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_015474.3	-1	reviewed	p.E228in_frame_del	0.000:0.000:0.033	-	-	-	-	-	-	-	-	-	HMMSmart_HDc,HMMPfam_HD,superfamily_SSF109604
CXADR	1525	genome.wustl.edu	37	21	18937982	18937982	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001338.3	+1	reviewed	p.A357G	1.000	32	0%	42	38.1%	2	50%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
LZTR1	8216	genome.wustl.edu	37	22	21337317	21337317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_006767.3	+1	reviewed	p.R68C	1.000	190	0%	242	33.5%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
BEND2	139105	genome.wustl.edu	37	X	18189323	18189323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_153346.4	-1	validated	p.S661R	0.000	93	0%	131	19.8%	0	-	possibly_damaging(0.85)	deleterious(0.02)	deleterious(0.710)	NULL
ARAF	369	genome.wustl.edu	37	X	47428207	47428207	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001654.3	+1	reviewed	p.S389	1.000	70	0%	81	30.9%	13	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
LOC100129144	100129144	genome.wustl.edu	37	X	66594098	66594098	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	XM_001721427.1	+1	model	p.P55	0.669	7	0.000	11	0.636	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NXF2	56001	genome.wustl.edu	37	X	101581402	101581402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_017809.3	+1	reviewed	p.A619T	0.041	371	0%	415	31.3%	0	-	benign(0.15)	tolerated(0.08)	neutral(0.313)	HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like
GLRA4	441509	genome.wustl.edu	37	X	102974096	102974096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001024452.2	-1	validated	p.W274C	1.000	141	0%	169	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
STAG2	10735	genome.wustl.edu	37	X	123197002	123197002	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001042749.1	+1	validated	p.Q590*	1.000	175	0%	186	32.3%	0	-	-	-	-	superfamily_ARM-type_fold
BCORL1	63035	genome.wustl.edu	37	X	129147411	129147411	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_021946.3	+1	reviewed	p.F221L	0.428	219	0%	205	31.7%	1	0%	unknown(0)	tolerated(0.49)	-	NULL
PHF6	84295	genome.wustl.edu	37	X	133549102	133549103	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0RA-01A-21D-A10B-09	TCGA-A5-A0RA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96440783-e5f9-47ae-909b-9c2c94d6a61e	55b9fa2c-f017-4dd4-b64e-0723dedb580a	NM_001015877.1	+1	reviewed	p.D263fs	0.996:1.000	-	-	-	-	-	-	-	-	-	NULL
