Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGBL1	0	genome.wustl.edu	37	15	87097616	87097616	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	15	87097616	87097616	C	T	SNP	AGBL1	NM_152336.2	human	genbank	58_37c	+1	validated	silent	c.2704	p.L902	0.949	HMMPfam_Peptidase_M14	HMMPfam_Peptidase_M14,superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases	-	no_errors
ARHGEF33	0	genome.wustl.edu	37	2	39199061	39199061	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	2	39199061	39199061	G	A	SNP	ARHGEF33	NM_001145451.2	human	genbank	58_37c	+1	validated	silent	c.2534	p.*845	1.000	NULL	HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	-	no_errors
ASAH2B	0	genome.wustl.edu	37	10	52502735	52502735	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	10	52502735	52502735	C	T	SNP	ASAH2B	NM_001079516.1	human	genbank	58_37c	+1	provisional	silent	c.51	p.F17	1.000	NULL	HMMPfam_Ceramidase_alk	-	no_errors
C6orf204	0	genome.wustl.edu	37	6	118953648	118953648	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	6	118953648	118953648	C	G	SNP	C6orf204	NM_001042475.2	human	genbank	58_37c	-1	validated	missense	c.200	p.G67A	1.000	NULL	NULL	-	no_errors
CD163L1	0	genome.wustl.edu	37	12	7550864	7550864	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	12	7550864	7550864	G	A	SNP	CD163L1	NM_174941.4	human	genbank	58_37c	-1	reviewed	silent	c.1725	p.C575	0.998	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
CDC25C	0	genome.wustl.edu	37	5	137666850	137666850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	5	137666850	137666850	G	A	SNP	CDC25C	NM_001790.3	human	genbank	58_37c	-1	reviewed	missense	c.20	p.S7L	0.084	NULL	HMMPfam_M-inducer_phosp,HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase	-	no_errors
CHD7	0	genome.wustl.edu	37	8	61777594	61777594	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	8	61777594	61777594	T	A	SNP	CHD7	NM_017780.2	human	genbank	58_37c	+1	reviewed	missense	c.8096	p.M2699K	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CSN1S1	0	genome.wustl.edu	37	4	70810640	70810640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	4	70810640	70810640	G	A	SNP	CSN1S1	ENST00000246891	human	ensembl	58_37c	+1	known	missense	c.475	p.V159I	0.000	NULL	PatternScan_CASEIN_ALPHA_BETA	-	no_errors
DYSF	0	genome.wustl.edu	37	2	71891541	71891541	+	Missense_Mutation	SNP	G	G	T	rs138472236	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	2	71891541	71891541	G	T	SNP	DYSF	NM_001130987.1	human	genbank	58_37c	+1	reviewed	missense	c.5147	p.R1716L	1.000	HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMSmart_DysFN,HMMSmart_DysFC,superfamily_C2_CaLB,HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors
ENSG00000234376	0	genome.wustl.edu	37	11	89486362	89486363	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	11	89486362	89486363	-	A	INS	ENSG00000234376	ENST00000411859	human	ensembl	58_37c	-1	known	frame_shift_ins	c.773_772	p.W258fs	1.000:1.000	HMMSmart_SM00398,superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	-	no_errors
F8	0	genome.wustl.edu	37	X	154159395	154159395	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	X	154159395	154159395	C	T	SNP	F8	NM_000132.3	human	genbank	58_37c	-1	reviewed	silent	c.2670	p.L890	0.004	NULL	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
FAT3	0	genome.wustl.edu	37	11	92531298	92531298	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	11	92531298	92531298	G	T	SNP	FAT3	NM_001008781.2	human	genbank	58_37c	+1	validated	missense	c.5119	p.D1707Y	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FNDC1	0	genome.wustl.edu	37	6	159635993	159635993	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	6	159635993	159635993	C	T	SNP	FNDC1	ENST00000329629	human	ensembl	58_37c	+1	known	nonsense	c.352	p.Q118*	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GBP5	0	genome.wustl.edu	37	1	89732807	89732807	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	89732807	89732807	T	C	SNP	GBP5	NM_001134486.1	human	genbank	58_37c	-1	validated	missense	c.458	p.K153R	0.003	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GPT	0	genome.wustl.edu	37	8	145730243	145730243	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	8	145730243	145730243	G	T	SNP	GPT	NM_005309.2	human	genbank	58_37c	+1	reviewed	silent	c.342	p.A114	0.005	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152189242	152189242	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	152189242	152189242	A	G	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	silent	c.4863	p.S1621	0.190	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
KCNK4	0	genome.wustl.edu	37	11	64064626	64064626	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	11	64064626	64064626	C	T	SNP	KCNK4	NM_033310.2	human	genbank	58_37c	+1	reviewed	missense	c.349	p.R117C	1.000	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	-	no_errors
LOC100133062	0	genome.wustl.edu	37	9	500571	500571	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	9	500571	500571	G	A	SNP	LOC100133062	XR_078401.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.015	-	-	-	pseudogene
LOC389137	0	genome.wustl.edu	37	3	94225862	94225862	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	3	94225862	94225862	C	A	SNP	LOC389137	XM_371655.4	human	genbank	58_37c	-1	model	silent	c.603	p.V201	0.518	HMMPfam_DUF634,superfamily_ARM-type_fold	HMMPfam_DUF634,superfamily_ARM-type_fold	-	pseudogene
LRBA	0	genome.wustl.edu	37	4	151223869	151223869	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	4	151223869	151223869	C	G	SNP	LRBA	NM_006726.2	human	genbank	58_37c	-1	validated	missense	c.7958	p.G2653A	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
MED12	0	genome.wustl.edu	37	X	70361150	70361151	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	X	70361150	70361151	-	CC	INS	MED12	NM_005120.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.6338_6339	p.Q2113fs	0.096:0.051	NULL	HMMPfam_Med12	-	no_errors
MED12	0	genome.wustl.edu	37	X	70361151	70361152	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	X	70361151	70361152	-	G	INS	MED12	NM_005120.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.6339_6340	p.Q2113fs	0.051:0.069	NULL	HMMPfam_Med12	-	no_errors
MEF2C	0	genome.wustl.edu	37	5	88047758	88047758	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	5	88047758	88047758	G	A	SNP	MEF2C	NM_002397.3	human	genbank	58_37c	-1	validated	silent	c.505	p.L169	1.000	NULL	HMMPfam_SRF-TF,HMMSmart_SM00432,PatternScan_MADS_BOX_1,superfamily_SRF-like	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100643689	100643689	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	7	100643689	100643689	C	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.10274	p.T3425R	0.007	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NPC1L1	0	genome.wustl.edu	37	7	44579574	44579574	+	Missense_Mutation	SNP	C	C	T	rs139110095	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	7	44579574	44579574	C	T	SNP	NPC1L1	NM_013389.2	human	genbank	58_37c	-1	reviewed	missense	c.422	p.R141H	0.819	NULL	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
PGAP2	0	genome.wustl.edu	37	11	3846853	3846855	+	RNA	DEL	CTC	CTC	-	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	11	3846853	3846855	CTC	-	DEL	PGAP2	NR_027014.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.231:0.226:0.001	-	-	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLEKHA6	0	genome.wustl.edu	37	1	204210567	204210567	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	204210567	204210567	T	C	SNP	PLEKHA6	NM_014935.2	human	genbank	58_37c	-1	validated	missense	c.2345	p.E782G	0.046	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
PPP1R7	0	genome.wustl.edu	37	2	242098694	242098694	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	2	242098694	242098694	G	A	SNP	PPP1R7	NM_002712.1	human	genbank	58_37c	+1	provisional	missense	c.370	p.E124K	1.000	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00446,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
PRAMEF25	0	genome.wustl.edu	37	1	13141354	13141354	+	Silent	SNP	C	C	G	rs1320957	byFrequency	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	1	13141354	13141354	C	G	SNP	PRAMEF25	XM_497653.4	human	genbank	58_37c	+1	model	silent	c.513	p.V171	0.001	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PTPN23	0	genome.wustl.edu	37	3	47451185	47451185	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	3	47451185	47451185	G	C	SNP	PTPN23	NM_015466.2	human	genbank	58_37c	+1	validated	missense	c.1990	p.A664P	1.000	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_BRO1,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RABEP1	0	genome.wustl.edu	37	17	5266266	5266267	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	17	5266266	5266267	AC	-	DEL	RABEP1	NM_004703.4	human	genbank	58_37c	+1	validated	frame_shift_del	c.1623_1624	p.Q542fs	1.000:1.000	HMMPfam_Rabaptin	HMMPfam_Rab5-bind,HMMPfam_Rabaptin	-	no_errors
RBBP6	0	genome.wustl.edu	37	16	24564880	24564881	+	Splice_Site	DEL	TA	TA	-	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	16	24564880	24564881	TA	-	DEL	RBBP6	NM_006910.4	human	genbank	58_37c	+1	reviewed	splice_site_del	c.348+2_348+1	e4+2	1.000:1.000	-	-	-	no_errors
TRBV4-1	0	genome.wustl.edu	37	7	142013409	142013409	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	7	142013409	142013409	C	T	SNP	TRBV4-1	ENST00000390357	human	ensembl	58_37c	+1	known	silent	c.264	p.P88	0.000	HMMPfam_V-set,superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon:bad_bp_length_for_coding_region
VWC2L	0	genome.wustl.edu	37	2	215440482	215440482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	2	215440482	215440482	G	A	SNP	VWC2L	NM_001080500.2	human	genbank	58_37c	+1	provisional	missense	c.607	p.G203R	1.000	NULL	HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_EGF_1	-	no_errors
ZNF180	0	genome.wustl.edu	37	19	44981511	44981511	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A13G-01A-11D-A13L-09	TCGA-A7-A13G-11A-51D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef847b83-eb88-435b-bcfd-4b51d4dfa5fe	7eaacabd-76fe-4080-9e1c-7277bffe8b89	19	44981511	44981511	A	T	SNP	ZNF180	NM_013256.3	human	genbank	58_37c	-1	validated	missense	c.1187	p.L396H	0.998	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
