Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACAD11	84129	genome.wustl.edu	37	3	132378462	132378462	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	132378462	132378462	G	T	SNP	ACAD11	NM_032169.4	human	genbank	58_37c	-1	validated	missense	c.134	p.T45N	0.001	HMMPfam_APH,superfamily_Protein kinase-like (PK-like)	HMMPfam_APH,HMMPfam_Acyl-CoA_dh_1,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_N,PatternScan_PROTEIN_KINASE_TYR,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,superfamily_Acyl-CoA dehydrogenase NM domain-like,superfamily_Protein kinase-like (PK-like)	-	no_errors
ANKRD13C	81573	genome.wustl.edu	37	1	70758132	70758132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	70758132	70758132	C	T	SNP	ANKRD13C	NM_030816.4	human	genbank	58_37c	-1	validated	missense	c.1154	p.R385Q	1.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
AQP10	89872	genome.wustl.edu	37	1	154293636	154293636	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	154293636	154293636	T	C	SNP	AQP10	NM_080429.2	human	genbank	58_37c	+1	reviewed	missense	c.5	p.V2A	0.000	NULL	HMMPfam_MIP,PatternScan_MIP,superfamily_Aquaporin-like	-	no_errors
ATM	472	genome.wustl.edu	37	11	108129723	108129723	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	108129723	108129723	A	C	SNP	ATM	NM_000051.3	human	genbank	58_37c	+1	reviewed	missense	c.2387	p.N796T	0.351	superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
ATXN1	6310	genome.wustl.edu	37	6	16328465	16328465	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	6	16328465	16328465	G	C	SNP	ATXN1	NM_000332.3	human	genbank	58_37c	-1	reviewed	missense	c.77	p.S26C	0.892	NULL	HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain	-	no_errors
ATXN2L	11273	genome.wustl.edu	37	16	28842080	28842080	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	16	28842080	28842080	C	T	SNP	ATXN2L	NM_148414.1	human	genbank	58_37c	+1	reviewed	silent	c.1179	p.G393	1.000	NULL	HMMPfam_LsmAD,HMMPfam_PAM2	-	no_errors
BAT5	7920	genome.wustl.edu	37	6	31655488	31655488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	6	31655488	31655488	C	T	SNP	BAT5	NM_021160.2	human	genbank	58_37c	-1	reviewed	missense	c.1477	p.E493K	1.000	superfamily_SSF53474	HMMPfam_Abhydrolase_1,superfamily_SSF53474	-	no_errors
C1orf85	112770	genome.wustl.edu	37	1	156263157	156263157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	156263157	156263157	C	T	SNP	C1orf85	NM_144580.1	human	genbank	58_37c	-1	provisional	missense	c.1009	p.G337R	0.999	NULL	NULL	-	no_errors
CASC5	57082	genome.wustl.edu	37	15	40921499	40921499	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	15	40921499	40921499	G	C	SNP	CASC5	NM_170589.3	human	genbank	58_37c	+1	validated	missense	c.5690	p.R1897T	0.524	NULL	NULL	-	no_errors
CASR	846	genome.wustl.edu	37	3	121980842	121980842	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	121980842	121980842	C	T	SNP	CASR	NM_000388.3	human	genbank	58_37c	+1	reviewed	silent	c.960	p.F320	0.980	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I	-	no_errors
CHD4	1108	genome.wustl.edu	37	12	6702335	6702335	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	6702335	6702335	G	A	SNP	CHD4	NM_001273.2	human	genbank	58_37c	-1	reviewed	silent	c.2574	p.D858	1.000	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00249,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1086,HMMPfam_DUF1087,superfamily_FYVE/PHD zinc finger,HMMPfam_CHDCT2,HMMPfam_CHDNT,HMMSmart_SM00487,superfamily_Chromo domain-like,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CYP11B2	1585	genome.wustl.edu	37	8	143994076	143994076	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	143994076	143994076	T	A	SNP	CYP11B2	NM_000498.3	human	genbank	58_37c	-1	reviewed	missense	c.1268	p.Y423F	0.852	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DLGAP4	22839	genome.wustl.edu	37	20	35060254	35060254	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	35060254	35060254	G	A	SNP	DLGAP4	NM_014902.4	human	genbank	58_37c	+1	reviewed	missense	c.134	p.R45H	1.000	NULL	HMMPfam_GKAP	-	no_errors
DNAH11	8701	genome.wustl.edu	37	7	21805205	21805205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	7	21805205	21805205	G	A	SNP	DNAH11	NM_003777.3	human	genbank	58_37c	+1	reviewed	missense	c.9121	p.E3041K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FGFR4	2264	genome.wustl.edu	37	5	176522628	176522628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	5	176522628	176522628	C	T	SNP	FGFR4	ENST00000511076	human	ensembl	58_37c	+1	known	missense	c.619	p.R207W	0.011	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
HSPBAP1	79663	genome.wustl.edu	37	3	122459670	122459670	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	122459670	122459670	G	A	SNP	HSPBAP1	NM_024610.4	human	genbank	58_37c	-1	provisional	missense	c.989	p.S330F	0.807	NULL	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors
LAMA1	284217	genome.wustl.edu	37	18	7015822	7015822	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	18	7015822	7015822	G	A	SNP	LAMA1	NM_005559.2	human	genbank	58_37c	-1	validated	missense	c.3025	p.P1009S	0.751	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LAMA4	3910	genome.wustl.edu	37	6	112512915	112512915	+	Missense_Mutation	SNP	C	C	T	rs139146419	by1000genomes	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	6	112512915	112512915	C	T	SNP	LAMA4	NM_001105206.1	human	genbank	58_37c	-1	reviewed	missense	c.641	p.R214H	0.957	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
LOC55908	55908	genome.wustl.edu	37	19	11350320	11350330	+	Frame_Shift_Del	DEL	GTGCCTGCTCT	GTGCCTGCTCT	-	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	GTGCCTGCTCT	GTGCCTGCTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	11350320	11350330	GTGCCTGCTCT	-	DEL	LOC55908	NM_018687.6	human	genbank	58_37c	+1	validated	frame_shift_del	c.166_176	p.L59fs	0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.004:0.949:0.993	NULL	NULL	-	no_errors
LRP6	4040	genome.wustl.edu	37	12	12311946	12311946	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	12311946	12311946	G	T	SNP	LRP6	NM_002336.2	human	genbank	58_37c	-1	reviewed	missense	c.2608	p.Q870K	1.000	HMMPfam_Ldl_recept_b,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
MARCH7	64844	genome.wustl.edu	37	2	160605150	160605150	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	2	160605150	160605150	C	T	SNP	MARCH7	NM_022826.2	human	genbank	58_37c	+1	validated	missense	c.1349	p.A450V	1.000	NULL	HMMSmart_RINGv,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
MLYCD	23417	genome.wustl.edu	37	16	83948559	83948560	+	Splice_Site	DEL	AG	AG	-	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	16	83948559	83948560	AG	-	DEL	MLYCD	NM_012213.2	human	genbank	58_37c	+1	reviewed	splice_site_del	c.949-2_949-1	e5-1	1.000:1.000	-	-	-	no_errors
MTMR11	10903	genome.wustl.edu	37	1	149908094	149908094	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	149908094	149908094	G	A	SNP	MTMR11	ENST00000439741	human	ensembl	58_37c	-1	known	missense	c.95	p.P32L	0.988	NULL	HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9065839	9065839	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	9065839	9065839	A	C	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.21607	p.S7203A	0.007	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1264973	1264973	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	1264973	1264973	C	T	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.6872	p.P2291L	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
NBEA	26960	genome.wustl.edu	37	13	35733461	35733463	+	In_Frame_Del	DEL	AGT	AGT	-	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	AGT	AGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	13	35733461	35733463	AGT	-	DEL	NBEA	NM_015678.4	human	genbank	58_37c	+1	validated	in_frame_del	c.3153_3155	p.V1052in_frame_del	1.000:1.000:1.000	superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
NUDT6	11162	genome.wustl.edu	37	4	123814333	123814333	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	4	123814333	123814333	C	T	SNP	NUDT6	NM_007083.3	human	genbank	58_37c	-1	validated	missense	c.601	p.E201K	1.000	HMMPfam_NUDIX,superfamily_Nudix	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX	-	no_errors
OR2W5	441932	genome.wustl.edu	37	1	247654793	247654793	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	247654793	247654793	C	T	SNP	OR2W5	NM_001004698.2	human	genbank	58_37c	+1	validated	missense	c.364	p.R122C	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PARP6	56965	genome.wustl.edu	37	15	72559136	72559136	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	15	72559136	72559136	C	T	SNP	PARP6	NM_020214.2	human	genbank	58_37c	-1	provisional	missense	c.31	p.D11N	1.000	NULL	HMMPfam_PARP,superfamily_ADP-ribosylation	-	no_errors
PCMTD2	55251	genome.wustl.edu	37	20	62891426	62891426	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	62891426	62891426	C	T	SNP	PCMTD2	NM_018257.2	human	genbank	58_37c	+1	validated	silent	c.108	p.I36	0.609	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
PCSK5	5125	genome.wustl.edu	37	9	78772039	78772039	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	9	78772039	78772039	G	A	SNP	PCSK5	NM_006200.3	human	genbank	58_37c	+1	reviewed	missense	c.1391	p.R464Q	1.000	superfamily_Galactose-binding domain-like	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Subtilisin-like,HMMPfam_P_proprotein,HMMSmart_SM00261,superfamily_Galactose-binding domain-like,superfamily_Protease propeptides/inhibitors,superfamily_Growth factor receptor domain,HMMPfam_PLAC	-	no_errors
PPM1L	151742	genome.wustl.edu	37	3	160474474	160474474	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	160474474	160474474	C	G	SNP	PPM1L	NM_139245.2	human	genbank	58_37c	+1	provisional	missense	c.378	p.I126M	1.000	PatternScan_PP2C,HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	PatternScan_PP2C,HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors
PREX2	80243	genome.wustl.edu	37	8	68965476	68965476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	68965476	68965476	G	A	SNP	PREX2	NM_024870.2	human	genbank	58_37c	+1	validated	missense	c.1088	p.R363Q	1.000	HMMSmart_SM00233,superfamily_PH domain-like	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
SALL4	57167	genome.wustl.edu	37	20	50400810	50400810	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	50400810	50400810	G	A	SNP	SALL4	NM_020436.3	human	genbank	58_37c	-1	reviewed	silent	c.3156	p.V1052	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
SCN3B	55800	genome.wustl.edu	37	11	123513189	123513189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	123513189	123513189	G	A	SNP	SCN3B	NM_001040151.1	human	genbank	58_37c	-1	reviewed	missense	c.410	p.T137M	1.000	HMMSmart_SM00409,HMMPfam_V-set	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
SCO2	9997	genome.wustl.edu	37	22	50962301	50962301	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	22	50962301	50962301	G	A	SNP	SCO2	NM_005138.2	human	genbank	58_37c	-1	reviewed	silent	c.540	p.Y180	0.986	HMMPfam_SCO1-SenC,superfamily_Thiordxn-like_fd	HMMPfam_SCO1-SenC,superfamily_Thiordxn-like_fd	-	no_errors
SP1	6667	genome.wustl.edu	37	12	53776064	53776064	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	53776064	53776064	T	C	SNP	SP1	NM_138473.2	human	genbank	58_37c	+1	validated	silent	c.333	p.S111	0.909	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
SPHK2	56848	genome.wustl.edu	37	19	49131440	49131440	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	49131440	49131440	C	T	SNP	SPHK2	NM_020126.3	human	genbank	58_37c	+1	provisional	missense	c.778	p.R260C	0.977	HMMPfam_DAGK_cat,HMMSmart_SM00046	HMMPfam_DAGK_cat,HMMSmart_SM00046	-	no_errors
ST18	9705	genome.wustl.edu	37	8	53079446	53079446	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	53079446	53079446	C	T	SNP	ST18	NM_014682.2	human	genbank	58_37c	-1	validated	silent	c.1170	p.S390	0.179	HMMPfam_zf-C2HC,superfamily_SSF103637	HMMPfam_zf-C2HC,HMMPfam_MYT1,superfamily_SSF103637	-	no_errors
TCHP	84260	genome.wustl.edu	37	12	110346447	110346447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	110346447	110346447	G	A	SNP	TCHP	NM_001143852.1	human	genbank	58_37c	+1	validated	silent	c.756	p.E252	0.320	NULL	NULL	-	no_errors
TMEM131	23505	genome.wustl.edu	37	2	98475800	98475802	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	2	98475800	98475802	TGT	-	DEL	TMEM131	NM_015348.1	human	genbank	58_37c	-1	validated	in_frame_del	c.450_448	p.T150in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	17	7579311	7579311	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	splice_site	c.375+1	e3+1	1.000	-	-	-	no_errors
UQCRC1	7384	genome.wustl.edu	37	3	48641015	48641015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	48641015	48641015	C	G	SNP	UQCRC1	NM_003365.2	human	genbank	58_37c	-1	validated	missense	c.688	p.V230L	1.000	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16	-	no_errors
