Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AFF3	3899	genome.wustl.edu	37	2	100623894	100623894	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	100623894	100623894	C	T	SNP	AFF3	NM_001025108.1	human	genbank	58_37c	-1	reviewed	missense	c.278	p.R93Q	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AQP6	363	genome.wustl.edu	37	12	50368232	50368232	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	50368232	50368232	T	A	SNP	AQP6	NM_001652.3	human	genbank	58_37c	+1	reviewed	silent	c.528	p.I176	0.975	HMMPfam_MIP,superfamily_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
ATG4D	84971	genome.wustl.edu	37	19	10663675	10663675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	19	10663675	10663675	C	T	SNP	ATG4D	NM_032885.4	human	genbank	58_37c	+1	reviewed	missense	c.1357	p.R453W	0.130	NULL	HMMPfam_Peptidase_C54	-	no_errors
ATM	472	genome.wustl.edu	37	11	108164150	108164151	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	108164150	108164151	GC	-	DEL	ATM	NM_000051.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.4722_4723	p.R1575fs	1.000:1.000	superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
ATM	472	genome.wustl.edu	37	11	108164152	108164152	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	108164152	108164152	G	T	SNP	ATM	NM_000051.3	human	genbank	58_37c	+1	reviewed	missense	c.4724	p.R1575L	0.997	superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
ATP10A	57194	genome.wustl.edu	37	15	25925049	25925049	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	15	25925049	25925049	C	A	SNP	ATP10A	NM_024490.3	human	genbank	58_37c	-1	reviewed	missense	c.3939	p.K1313N	0.002	NULL	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660	-	no_errors
ATP8A1	10396	genome.wustl.edu	37	4	42416696	42416696	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	4	42416696	42416696	C	A	SNP	ATP8A1	NM_006095.2	human	genbank	58_37c	-1	reviewed	missense	c.3345	p.K1115N	1.000	NULL	HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
C13orf33	84935	genome.wustl.edu	37	13	31495228	31495228	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	13	31495228	31495228	A	G	SNP	C13orf33	NM_032849.3	human	genbank	58_37c	+1	validated	missense	c.466	p.I156V	1.000	NULL	NULL	-	no_errors
C14orf159	80017	genome.wustl.edu	37	14	91639748	91639748	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	14	91639748	91639748	G	A	SNP	C14orf159	NM_001102369.1	human	genbank	58_37c	+1	validated	splice_site	c.556+1	e4+1	0.000	-	-	-	no_errors
C17orf102	0	genome.wustl.edu	37	17	32905986	32905986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	17	32905986	32905986	C	T	SNP	C17orf102	NM_207454.2	human	genbank	58_37c	-1	validated	missense	c.314	p.R105H	0.000	NULL	NULL	-	no_errors
C3orf24	115795	genome.wustl.edu	37	3	10146188	10146188	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	3	10146188	10146188	G	A	SNP	C3orf24	NM_173472.1	human	genbank	58_37c	-1	validated	missense	c.271	p.P91S	1.000	NULL	NULL	-	no_errors
C6orf105	84830	genome.wustl.edu	37	6	11768480	11768480	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	6	11768480	11768480	A	G	SNP	C6orf105	NM_001143948.1	human	genbank	58_37c	-1	validated	splice_site	c.342+2	e3+2	1.000	-	-	-	no_errors
C9orf7	11094	genome.wustl.edu	37	9	136333148	136333148	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	9	136333148	136333148	A	T	SNP	C9orf7	NM_017586.2	human	genbank	58_37c	+1	validated	missense	c.426	p.K142N	0.878	HMMPfam_Cg6151-P	HMMPfam_Cg6151-P	-	no_errors
CD302	9936	genome.wustl.edu	37	2	160628389	160628391	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	160628389	160628391	TTC	-	DEL	CD302	NM_014880.4	human	genbank	58_37c	-1	validated	in_frame_del	c.672_670	p.E224in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
CELA2A	63036	genome.wustl.edu	37	1	15793991	15793991	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	15793991	15793991	C	T	SNP	CELA2A	NM_033440.2	human	genbank	58_37c	+1	reviewed	silent	c.750	p.S250	0.987	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CHRM2	1129	genome.wustl.edu	37	7	136699781	136699781	+	Missense_Mutation	SNP	G	G	A	rs143842239	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	7	136699781	136699781	G	A	SNP	CHRM2	NM_000739.2	human	genbank	58_37c	+1	reviewed	missense	c.169	p.V57I	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CMPK2	129607	genome.wustl.edu	37	2	6990088	6990088	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	6990088	6990088	G	A	SNP	CMPK2	NM_207315.2	human	genbank	58_37c	-1	validated	nonsense	c.1243	p.Q415*	0.838	HMMPfam_Thymidylate_kin,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Thymidylate_kin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CTNNA2	1496	genome.wustl.edu	37	2	80136769	80136769	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	80136769	80136769	C	T	SNP	CTNNA2	NM_004389.3	human	genbank	58_37c	+1	validated	missense	c.902	p.P301L	1.000	HMMPfam_Vinculin	PatternScan_VINCULIN_1,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
DMBX1	127343	genome.wustl.edu	37	1	46976927	46976927	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	46976927	46976927	G	T	SNP	DMBX1	NM_147192.2	human	genbank	58_37c	+1	reviewed	silent	c.669	p.L223	0.973	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_OAR,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
DTX1	1840	genome.wustl.edu	37	12	113532684	113532684	+	Missense_Mutation	SNP	C	C	T	rs183848543	by1000genomes	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	113532684	113532684	C	T	SNP	DTX1	NM_004416.2	human	genbank	58_37c	+1	reviewed	missense	c.1318	p.R440C	1.000	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850	HMMSmart_RING,HMMPfam_WWE,PatternScan_ZF_RING_1,HMMSmart_WWE,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ENSG00000222777	0	genome.wustl.edu	37	17	37702410	37702410	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	17	37702410	37702410	C	A	SNP	ENSG00000222777	ENST00000410845	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.154	-	-	-	no_errors
ENSG00000245029	0	genome.wustl.edu	37	1	16889820	16889820	+	RNA	SNP	C	C	T	rs78775795	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	16889820	16889820	C	T	SNP	NBPF1	ENST00000392963	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-16889820	NULL	0.025	-	-	-	no_coding_region
FABP1	2168	genome.wustl.edu	37	2	88425708	88425708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	88425708	88425708	C	T	SNP	FABP1	NM_001443.1	human	genbank	58_37c	-1	reviewed	missense	c.227	p.G76E	1.000	HMMPfam_Lipocalin,superfamily_Lipocalins	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Lipocalins	-	no_errors
GLI1	2735	genome.wustl.edu	37	12	57859576	57859576	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	57859576	57859576	C	T	SNP	GLI1	NM_005269.2	human	genbank	58_37c	+1	reviewed	silent	c.630	p.P210	0.994	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
GRM6	2916	genome.wustl.edu	37	5	178408823	178408823	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	5	178408823	178408823	G	T	SNP	GRM6	NM_000843.3	human	genbank	58_37c	-1	reviewed	silent	c.2469	p.S823	1.000	HMMPfam_7tm_3	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors
HADHA	3030	genome.wustl.edu	37	2	26417472	26417472	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	26417472	26417472	C	T	SNP	HADHA	NM_000182.4	human	genbank	58_37c	-1	reviewed	silent	c.1656	p.A552	0.629	HMMPfam_3HCDH,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like	HMMPfam_ECH,HMMPfam_3HCDH,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_ENOYL_COA_HYDRATASE,superfamily_ClpP/crotonase	-	no_errors
IL16	3603	genome.wustl.edu	37	15	81517749	81517749	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	15	81517749	81517749	G	A	SNP	IL16	NM_172217.3	human	genbank	58_37c	+1	reviewed	silent	c.9	p.S3	0.020	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
ITPKB	3707	genome.wustl.edu	37	1	226825450	226825450	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	226825450	226825450	A	G	SNP	ITPKB	NM_002221.3	human	genbank	58_37c	-1	reviewed	missense	c.2555	p.I852T	0.053	HMMPfam_IPK,superfamily_SAICAR synthase-like	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	no_errors
KCNK5	8645	genome.wustl.edu	37	6	39158914	39158914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	6	39158914	39158914	C	T	SNP	KCNK5	NM_003740.3	human	genbank	58_37c	-1	reviewed	missense	c.1252	p.A418T	0.873	NULL	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
KDM4C	23081	genome.wustl.edu	37	9	6814672	6814672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	9	6814672	6814672	G	A	SNP	KDM4C	NM_015061.3	human	genbank	58_37c	+1	reviewed	missense	c.362	p.R121H	1.000	NULL	HMMSmart_SM00249,HMMSmart_SM00333,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,superfamily_Tudor/PWWP/MBT	-	no_errors
KPRP	448834	genome.wustl.edu	37	1	152733785	152733785	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	152733785	152733785	C	A	SNP	KPRP	NM_001025231.1	human	genbank	58_37c	+1	provisional	missense	c.1721	p.A574E	0.000	NULL	NULL	-	no_errors
L3MBTL4	91133	genome.wustl.edu	37	18	6080916	6080917	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	18	6080916	6080917	-	T	INS	L3MBTL4	NM_173464.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1408_1407	p.G469fs	1.000:1.000	NULL	HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_zf-C2HC,HMMPfam_MBT,HMMSmart_MBT,superfamily_SAM_homology,superfamily_SSF103637,superfamily_SSF63748	-	no_errors
LOC100287354	0	genome.wustl.edu	37	9	68455095	68455095	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	9	68455095	68455095	G	C	SNP	LOC100287354	XM_002344262.1	human	genbank	58_37c	+1	model	missense	c.214	p.G72R	0.000	NULL	PatternScan_COX1_CUB	-	no_errors
MLL	4297	genome.wustl.edu	37	11	118350902	118350902	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	118350902	118350902	C	T	SNP	MLL	NM_005933.2	human	genbank	58_37c	+1	validated	nonsense	c.3583	p.Q1195*	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,PatternScan_RECR,HMMPfam_AT_hook,PatternScan_EF_HAND_1,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MRPS35	60488	genome.wustl.edu	37	12	27890496	27890496	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	27890496	27890496	C	T	SNP	MRPS35	NM_021821.2	human	genbank	58_37c	+1	reviewed	silent	c.657	p.Y219	0.950	HMMPfam_MRP-S28	HMMPfam_MRP-S28	-	no_errors
NR1D1	9572	genome.wustl.edu	37	17	38251892	38251892	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	17	38251892	38251892	A	T	SNP	NR1D1	NM_021724.2	human	genbank	58_37c	-1	provisional	missense	c.1053	p.H351Q	0.991	superfamily_Str_ncl_receptor	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
NRIP1	8204	genome.wustl.edu	37	21	16338239	16338239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	21	16338239	16338239	G	A	SNP	NRIP1	NM_003489.3	human	genbank	58_37c	-1	reviewed	missense	c.2275	p.P759S	1.000	NULL	NULL	-	no_errors
ODZ1	10178	genome.wustl.edu	37	X	123680767	123680767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	X	123680767	123680767	C	T	SNP	ODZ1	NM_014253.3	human	genbank	58_37c	-1	reviewed	missense	c.2608	p.D870N	1.000	NULL	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196	-	no_errors
OR51G2	81282	genome.wustl.edu	37	11	4936757	4936757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	4936757	4936757	C	T	SNP	OR51G2	NM_001005238.1	human	genbank	58_37c	-1	provisional	missense	c.137	p.G46D	0.684	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
P2RX3	5024	genome.wustl.edu	37	11	57114069	57114069	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	11	57114069	57114069	G	C	SNP	P2RX3	NM_002559.2	human	genbank	58_37c	+1	reviewed	missense	c.171	p.E57D	1.000	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	no_errors
PAFAH1B1	5048	genome.wustl.edu	37	17	2575983	2575983	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	17	2575983	2575983	G	T	SNP	PAFAH1B1	NM_000430.3	human	genbank	58_37c	+1	reviewed	missense	c.603	p.M201I	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,HMMSmart_SM00667,superfamily_WD40 repeat-like,HMMPfam_LisH,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_Lissencephaly-1 protein (Lis-1 PAF-AH alpha) N-terminal domain	-	no_errors
PPEF1	5475	genome.wustl.edu	37	X	18768068	18768068	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	X	18768068	18768068	C	T	SNP	PPEF1	NM_006240.2	human	genbank	58_37c	+1	reviewed	nonsense	c.394	p.Q132*	0.747	HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases	HMMPfam_IQ,HMMSmart_SM00015,HMMSmart_SM00054,HMMPfam_Metallophos,HMMSmart_SM00156,PatternScan_SER_THR_PHOSPHATASE,HMMPfam_PPP5,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Metallo-dependent phosphatases	-	no_errors
PSMD4	5710	genome.wustl.edu	37	1	151238994	151238994	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	1	151238994	151238994	A	G	SNP	PSMD4	NM_002810.2	human	genbank	58_37c	+1	reviewed	splice_site	c.896-2	e9-2	1.000	-	-	-	no_errors
PSMD5	5711	genome.wustl.edu	37	9	123593626	123593626	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	9	123593626	123593626	G	A	SNP	PSMD5	NM_005047.2	human	genbank	58_37c	-1	reviewed	nonsense	c.544	p.R182*	1.000	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB	-	no_errors
RAD21	5885	genome.wustl.edu	37	8	117875465	117875466	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	8	117875465	117875466	AG	-	DEL	RAD21	NM_006265.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.178_177	p.L60fs	1.000:0.978	HMMPfam_Rad21_Rec8_N	HMMPfam_Rad21_Rec8,HMMPfam_Rad21_Rec8_N	-	no_errors
RYR3	6263	genome.wustl.edu	37	15	34131109	34131109	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	15	34131109	34131109	G	T	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	missense	c.12928	p.D4310Y	0.640	HMMPfam_RR_TM4-6	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SERPINB7	8710	genome.wustl.edu	37	18	61471507	61471507	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	18	61471507	61471507	T	A	SNP	SERPINB7	NM_001040147.1	human	genbank	58_37c	+1	validated	missense	c.781	p.W261R	0.992	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SETX	23064	genome.wustl.edu	37	9	135211712	135211712	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	9	135211712	135211712	T	C	SNP	SETX	NM_015046.5	human	genbank	58_37c	-1	reviewed	missense	c.689	p.D230G	0.996	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SIGLEC9	27180	genome.wustl.edu	37	19	51629052	51629052	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	19	51629052	51629052	A	G	SNP	SIGLEC9	NM_014441.1	human	genbank	58_37c	+1	provisional	missense	c.620	p.H207R	0.668	HMMPfam_ig,superfamily_SSF48726	HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
SLC15A4	121260	genome.wustl.edu	37	12	129285502	129285502	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	129285502	129285502	C	A	SNP	SLC15A4	NM_145648.3	human	genbank	58_37c	-1	validated	missense	c.1311	p.Q437H	1.000	HMMPfam_PTR2,superfamily_MFS general substrate transporter	HMMPfam_PTR2,PatternScan_MULTICOPPER_OXIDASE1,superfamily_MFS general substrate transporter,PatternScan_PTR2_2	-	no_errors
SLC20A1	6574	genome.wustl.edu	37	2	113405016	113405016	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	2	113405016	113405016	C	T	SNP	SLC20A1	NM_005415.3	human	genbank	58_37c	+1	provisional	silent	c.450	p.V150	1.000	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors
STIM2	57620	genome.wustl.edu	37	4	27009202	27009202	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	4	27009202	27009202	C	T	SNP	STIM2	NM_020860.3	human	genbank	58_37c	+1	reviewed	silent	c.1290	p.S430	1.000	NULL	superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
STOX2	56977	genome.wustl.edu	37	4	184932355	184932355	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	4	184932355	184932355	G	T	SNP	STOX2	ENST00000506529	human	ensembl	58_37c	+1	known	nonsense	c.430	p.E144*	0.231	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TP63	8626	genome.wustl.edu	37	3	189582203	189582203	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	3	189582203	189582203	C	T	SNP	TP63	NM_003722.4	human	genbank	58_37c	+1	reviewed	silent	c.762	p.N254	0.236	superfamily_p53-like transcription factors,HMMPfam_P53	HMMSmart_SM00454,PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_P53	-	no_errors
TREML2	79865	genome.wustl.edu	37	6	41162312	41162312	+	Silent	SNP	G	G	A	rs141822677	byCluster;byFrequency;by1000genomes	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	6	41162312	41162312	G	A	SNP	TREML2	NM_024807.2	human	genbank	58_37c	-1	validated	silent	c.636	p.T212	0.003	NULL	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
WDR66	144406	genome.wustl.edu	37	12	122437780	122437780	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07P-01A-11W-A019-09	TCGA-A8-A07P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b88ff64-bf43-43e8-9ea9-0de571520d72	43c44bf2-cb01-4747-8481-ce0c65be4863	12	122437780	122437780	C	T	SNP	WDR66	NM_144668.4	human	genbank	58_37c	+1	validated	silent	c.3165	p.L1055	0.444	superfamily_EF-hand	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,superfamily_EF-hand	-	no_errors
