Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGXT2	64902	genome.wustl.edu	37	5	35039475	35039475	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	5	35039475	35039475	C	A	SNP	AGXT2	NM_031900.3	human	genbank	58_37c	-1	reviewed	missense	c.316	p.D106Y	1.000	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major	HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3,superfamily_PyrdxlP-dep_Trfase_major	-	no_errors
BEND3	57673	genome.wustl.edu	37	6	107390228	107390228	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	6	107390228	107390228	C	T	SNP	BEND3	NM_001080450.2	human	genbank	58_37c	-1	validated	missense	c.2167	p.D723N	1.000	NULL	HMMPfam_BEN	-	no_errors
BOD1L	259282	genome.wustl.edu	37	4	13605938	13605938	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	4	13605938	13605938	G	A	SNP	BOD1L	NM_148894.2	human	genbank	58_37c	-1	validated	silent	c.2586	p.I862	0.000	superfamily_SSF81995	HMMPfam_AT_hook,HMMSmart_AT_hook,superfamily_SSF81995	-	no_errors
C7orf51	222950	genome.wustl.edu	37	7	100088184	100088184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	100088184	100088184	C	T	SNP	C7orf51	NM_173564.2	human	genbank	58_37c	+1	predicted	missense	c.1990	p.P664S	0.995	NULL	NULL	-	no_errors
CUX2	23316	genome.wustl.edu	37	12	111785675	111785675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	12	111785675	111785675	C	T	SNP	CUX2	NM_015267.3	human	genbank	58_37c	+1	validated	missense	c.4007	p.P1336L	0.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
CYTH3	9265	genome.wustl.edu	37	7	6210581	6210581	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	6210581	6210581	G	A	SNP	CYTH3	NM_004227.3	human	genbank	58_37c	-1	reviewed	silent	c.591	p.I197	1.000	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
DCAF12	25853	genome.wustl.edu	37	9	34125232	34125232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	9	34125232	34125232	G	A	SNP	DCAF12	NM_015397.3	human	genbank	58_37c	-1	reviewed	missense	c.122	p.P41L	0.974	NULL	HMMSmart_WD40,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_SSF75011	-	no_errors
EPHA6	285220	genome.wustl.edu	37	3	97185269	97185269	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	97185269	97185269	C	G	SNP	EPHA6	NM_173655.2	human	genbank	58_37c	+1	provisional	missense	c.13	p.P5A	0.001	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP	-	no_errors
EXOC4	60412	genome.wustl.edu	37	7	132937919	132937919	+	Missense_Mutation	SNP	C	C	T	rs183280115	by1000genomes	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	132937919	132937919	C	T	SNP	EXOC4	NM_021807.3	human	genbank	58_37c	+1	reviewed	missense	c.62	p.S21L	1.000	HMMPfam_Sec8_exocyst	PatternScan_DEAH_ATP_HELICASE,HMMPfam_Sec8_exocyst	-	no_errors
FAM192A	80011	genome.wustl.edu	37	16	57188235	57188235	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	16	57188235	57188235	G	A	SNP	FAM192A	NM_024946.2	human	genbank	58_37c	-1	validated	silent	c.732	p.I244	1.000	NULL	HMMPfam_Nefa_Nip30_N	-	no_errors
FAM196B	0	genome.wustl.edu	37	5	169310560	169310560	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	5	169310560	169310560	G	A	SNP	FAM196B	NM_001129891.1	human	genbank	58_37c	-1	predicted	missense	c.343	p.L115F	0.999	NULL	NULL	-	no_errors
FAM38A	9780	genome.wustl.edu	37	16	88799821	88799821	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	16	88799821	88799821	G	A	SNP	FAM38A	ENST00000451779	human	ensembl	58_37c	-1	known	silent	c.1140	p.F380	0.994	NULL	PatternScan_IG_MHC	-	no_errors
GBP5	115362	genome.wustl.edu	37	1	89732775	89732775	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	1	89732775	89732775	C	G	SNP	GBP5	NM_001134486.1	human	genbank	58_37c	-1	validated	missense	c.490	p.E164Q	0.156	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GFM1	85476	genome.wustl.edu	37	3	158376754	158376754	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	158376754	158376754	G	A	SNP	GFM1	NM_024996.5	human	genbank	58_37c	+1	reviewed	missense	c.1127	p.G376E	1.000	HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor	HMMPfam_EFG_C,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D2,HMMPfam_EFG_IV,superfamily_Translat_factor,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF52540	-	no_errors
GLRB	2743	genome.wustl.edu	37	4	158065056	158065056	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	4	158065056	158065056	C	T	SNP	GLRB	NM_000824.4	human	genbank	58_37c	+1	reviewed	silent	c.849	p.L283	0.751	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GREB1L	80000	genome.wustl.edu	37	18	19019528	19019528	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	18	19019528	19019528	C	T	SNP	GREB1L	NM_001142966.1	human	genbank	58_37c	+1	provisional	silent	c.879	p.S293	0.656	NULL	PatternScan_ASP_PROTEASE	-	no_errors
HIVEP2	3097	genome.wustl.edu	37	6	143091478	143091478	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	6	143091478	143091478	G	A	SNP	HIVEP2	NM_006734.3	human	genbank	58_37c	-1	provisional	silent	c.4398	p.Y1466	0.147	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195506364	195506364	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	195506364	195506364	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11703	p.H3901Q	0.005	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MYST4	23522	genome.wustl.edu	37	10	76603067	76603067	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	10	76603067	76603067	G	A	SNP	MYST4	NM_012330.2	human	genbank	58_37c	+1	validated	missense	c.452	p.R151Q	1.000	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ODZ1	10178	genome.wustl.edu	37	X	123518516	123518516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	123518516	123518516	C	T	SNP	ODZ1	NM_014253.3	human	genbank	58_37c	-1	reviewed	missense	c.6244	p.V2082I	1.000	NULL	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196	-	no_errors
OR2B11	127623	genome.wustl.edu	37	1	247614573	247614573	+	Nonsense_Mutation	SNP	G	G	A	rs145019591	byFrequency	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	1	247614573	247614573	G	A	SNP	OR2B11	NM_001004492.1	human	genbank	58_37c	-1	provisional	nonsense	c.712	p.R238*	0.198	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHA5	56143	genome.wustl.edu	37	5	140203377	140203377	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	5	140203377	140203377	C	A	SNP	PCDHA5	NM_018908.2	human	genbank	58_37c	+1	reviewed	missense	c.2017	p.Q673K	0.073	HMMSmart_SM00112	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PDGFRA	5156	genome.wustl.edu	37	4	55141065	55141065	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	4	55141065	55141065	G	A	SNP	PDGFRA	NM_006206.4	human	genbank	58_37c	+1	reviewed	missense	c.1711	p.E571K	1.000	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
PLCG1	5335	genome.wustl.edu	37	20	39802138	39802138	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	20	39802138	39802138	G	A	SNP	PLCG1	NM_002660.2	human	genbank	58_37c	+1	reviewed	missense	c.3358	p.E1120K	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,HMMPfam_PH,HMMSmart_PH,superfamily_C2_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl,PatternScan_EF_HAND_1,superfamily_SSF47473,superfamily_SSF50729,superfamily_SSF55550	-	no_errors
PRAMEF17	0	genome.wustl.edu	37	1	13716922	13716922	+	Missense_Mutation	SNP	G	G	A	rs76434036	byFrequency	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	1	13716922	13716922	G	A	SNP	PRAMEF17	NM_001099851.1	human	genbank	58_37c	+1	provisional	missense	c.409	p.D137N	0.005	superfamily_RNI-like	superfamily_RNI-like	-	no_errors
PRKRIR	5612	genome.wustl.edu	37	11	76062204	76062204	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	11	76062204	76062204	C	T	SNP	PRKRIR	NM_004705.2	human	genbank	58_37c	-1	provisional	missense	c.1990	p.E664K	1.000	HMMPfam_hATC	HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC	-	no_errors
SEC31B	25956	genome.wustl.edu	37	10	102255183	102255183	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	10	102255183	102255183	C	G	SNP	SEC31B	NM_015490.3	human	genbank	58_37c	-1	reviewed	missense	c.2431	p.E811Q	0.283	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
SEC31B	25956	genome.wustl.edu	37	10	102269149	102269149	+	Missense_Mutation	SNP	G	G	A	rs148779271	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	10	102269149	102269149	G	A	SNP	SEC31B	NM_015490.3	human	genbank	58_37c	-1	reviewed	missense	c.323	p.S108L	0.985	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
SLCO5A1	81796	genome.wustl.edu	37	8	70591657	70591657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	8	70591657	70591657	G	T	SNP	SLCO5A1	NM_030958.2	human	genbank	58_37c	-1	reviewed	missense	c.1980	p.F660L	1.000	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
TGFBR1	7046	genome.wustl.edu	37	9	101900249	101900249	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	9	101900249	101900249	A	T	SNP	TGFBR1	NM_004612.2	human	genbank	58_37c	+1	reviewed	missense	c.683	p.E228V	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	17	7577558	7577558	G	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.723	p.C242fs	1.000	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPO	7173	genome.wustl.edu	37	2	1500429	1500429	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	2	1500429	1500429	G	A	SNP	TPO	NM_000547.5	human	genbank	58_37c	+1	reviewed	missense	c.2278	p.G760R	0.793	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMSmart_SM00179,HMMPfam_An_peroxidase,HMMSmart_SM00181,superfamily_Heme-dependent peroxidases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,PatternScan_PEROXIDASE_1,superfamily_EGF/Laminin	-	no_errors
TRIM55	84675	genome.wustl.edu	37	8	67040682	67040682	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	8	67040682	67040682	C	A	SNP	TRIM55	NM_184085.1	human	genbank	58_37c	+1	reviewed	silent	c.312	p.I104	1.000	superfamily_RING/U-box	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
UPK2	7379	genome.wustl.edu	37	11	118828354	118828354	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	11	118828354	118828354	G	C	SNP	UPK2	NM_006760.3	human	genbank	58_37c	+1	reviewed	missense	c.394	p.E132Q	0.316	HMMPfam_Uroplakin_II	HMMPfam_Uroplakin_II	-	no_errors
VPS33A	65082	genome.wustl.edu	37	12	122716807	122716807	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	12	122716807	122716807	C	G	SNP	VPS33A	NM_022916.4	human	genbank	58_37c	-1	validated	missense	c.1777	p.E593Q	1.000	superfamily_Sec1-like	HMMPfam_Sec1,superfamily_Sec1-like	-	no_errors
XRN2	22803	genome.wustl.edu	37	20	21329049	21329049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	20	21329049	21329049	G	A	SNP	XRN2	NM_012255.3	human	genbank	58_37c	+1	reviewed	missense	c.1844	p.R615Q	1.000	NULL	HMMPfam_XRN_N	-	no_errors
ZNF157	7712	genome.wustl.edu	37	X	47270116	47270116	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	47270116	47270116	G	C	SNP	ZNF157	NM_003446.3	human	genbank	58_37c	+1	reviewed	missense	c.237	p.L79F	1.000	HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF41	7592	genome.wustl.edu	37	X	47307056	47307056	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	47307056	47307056	G	A	SNP	ZNF41	NM_007130.2	human	genbank	58_37c	-1	reviewed	missense	c.2113	p.R705C	0.021	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
