Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NOC2L	26155	genome.wustl.edu	37	1	891523	891523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015658.3	-1	validated	p.D187N	1.000	19	0%	36	69.4%	62	51.6%	benign(0.275)	deleterious(0.01)	neutral(0.435)	NULL
ATAD3B	83858	genome.wustl.edu	37	1	1416264	1416264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031921.4	+1	provisional	p.E154D	0.998	30	0%	33	21.2%	25	12%	benign(0.032)	tolerated(0.18)	neutral(0.058)	NULL
SLC35E2	9906	genome.wustl.edu	37	1	1599838	1599838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001110781.1	-1	validated	p.D303G	0.998	77	1.3%	67	16.4%	9	11.1%	probably_damaging(0.958)	tolerated(0.35)	neutral(0.422)	HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE
CDK11A	728642	genome.wustl.edu	37	1	1647886	1647886	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024011.2	-1	reviewed	p.H129	0.294	90	0%	101	14.9%	5	40%	-	-	-	NULL
SLC35E2	9906	genome.wustl.edu	37	1	1666201	1666201	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182838.1	-1	validated	p.R220	0.997	58	0%	63	15.9%	15	0%	-	-	-	NULL
ACTRT2	140625	genome.wustl.edu	37	1	2938643	2938643	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080431.4	+1	reviewed	p.F131	0.909	22	0%	20	20%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTRT2	140625	genome.wustl.edu	37	1	2938986	2938986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080431.4	+1	reviewed	p.D246N	0.998	31	0%	20	30%	0	-	possibly_damaging(0.874)	deleterious(0)	deleterious(0.784)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTRT2	140625	genome.wustl.edu	37	1	2939133	2939133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080431.4	+1	reviewed	p.L295I	0.999	52	0%	31	41.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PRDM16	63976	genome.wustl.edu	37	1	3319387	3319387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022114.3	+1	reviewed	p.E237K	1.000	21	0%	16	31.2%	0	-	possibly_damaging(0.942)	tolerated(1)	neutral(0.387)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MEGF6	1953	genome.wustl.edu	37	1	3425194	3425194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001409.3	-1	validated	p.G530R	1.000	18	0%	21	33.3%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00181,superfamily_EGF/Laminin
TPRG1L	127262	genome.wustl.edu	37	1	3545084	3545084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182752.3	+1	validated	p.E246K	1.000	26	0%	19	26.3%	32	28.1%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	NULL
CCDC27	148870	genome.wustl.edu	37	1	3680308	3680308	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152492.2	+1	validated	p.E454*	0.065	107	0%	111	34.2%	0	-	-	-	-	NULL
CHD5	26038	genome.wustl.edu	37	1	6188584	6188584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015557.1	-1	provisional	p.K1235N	0.998	12	0%	15	46.7%	0	-	benign(0.17)	tolerated(0.08)	neutral(0.316)	NULL
CHD5	26038	genome.wustl.edu	37	1	6206455	6206455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015557.1	-1	provisional	p.R540H	1.000	48	0%	38	15.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_CHROMO,superfamily_Chromodomain-like
TAS1R1	80835	genome.wustl.edu	37	1	6630992	6630992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138697.3	+1	reviewed	p.G72D	1.000	579	0%	682	30.9%	2	50%	unknown(0)	deleterious(0.04)	-	superfamily_Periplasmic binding protein-like I
CAMTA1	23261	genome.wustl.edu	37	1	7723933	7723933	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015215.1	+1	validated	p.F442	1.000	65	1.5%	51	39.2%	0	-	-	-	-	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7724121	7724121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015215.1	+1	validated	p.A505V	0.347	59	0%	55	32.7%	0	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
PER3	8863	genome.wustl.edu	37	1	7869050	7869050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016831.1	+1	reviewed	p.L411I	1.000	70	0%	43	30.2%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
PER3	8863	genome.wustl.edu	37	1	7897173	7897173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016831.1	+1	reviewed	p.I1162M	0.996	199	0%	197	34.5%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
UTS2	10911	genome.wustl.edu	37	1	7912977	7912977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021995.2	-1	reviewed	p.I44M	0.000	192	0%	174	31%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
UTS2	10911	genome.wustl.edu	37	1	7913394	7913394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021995.2	-1	reviewed	p.S33N	0.427	129	0%	92	10.9%	1	0%	benign(0.418)	deleterious(0)	deleterious(0.580)	NULL
TNFRSF9	3604	genome.wustl.edu	37	1	7993313	7993313	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001561.4	-1	reviewed	p.S196	0.000	71	0%	80	35%	0	-	-	-	-	NULL
TNFRSF9	3604	genome.wustl.edu	37	1	7998818	7998818	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001561.4	-1	reviewed	p.G57	0.012	204	0%	212	27.4%	0	-	-	-	-	HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1
RERE	473	genome.wustl.edu	37	1	8421484	8421484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042681.1	-1	reviewed	p.D695N	1.000	51	0%	55	32.7%	16	37.5%	unknown(0)	deleterious(0.02)	-	HMMPfam_Atrophin-1
SLC25A33	84275	genome.wustl.edu	37	1	9642445	9642445	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032315.2	+1	validated	p.Y284*	0.990	59	0%	44	18.2%	42	42.8%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
C1orf200	644997	genome.wustl.edu	37	1	9714360	9714360	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000377320	-1	known	p.G45	0.006	61	0%	53	26.4%	0	-	-	-	-	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9793473	9793473	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009566.1	-1	validated	p.E805*	0.978	62	0%	33	15.2%	72	1.3%	-	-	-	NULL
KIF1B	23095	genome.wustl.edu	37	1	10363226	10363226	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183416.3	+1	reviewed	p.A661	1.000	209	0%	137	37.2%	2	0%	-	-	-	NULL
KIF1B	23095	genome.wustl.edu	37	1	10363932	10363932	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183416.3	+1	reviewed	p.E897*	0.923	208	0%	187	26.7%	5	0%	-	-	-	NULL
KIF1B	23095	genome.wustl.edu	37	1	10364406	10364406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183416.3	+1	reviewed	p.N1055D	1.000	569	0%	463	34.6%	0	-	possibly_damaging(0.776)	tolerated(0.47)	neutral(0.300)	NULL
KIF1B	23095	genome.wustl.edu	37	1	10434937	10434937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015074.3	+1	reviewed	p.L1662I	1.000	124	0%	128	10.2%	34	29.4%	possibly_damaging(0.849)	tolerated(0.07)	deleterious(0.645)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
APITD1	378708	genome.wustl.edu	37	1	10500410	10500410	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198544.2	+1	reviewed	p.A72	0.886	73	0%	73	24.7%	37	40.5%	-	-	-	superfamily_Histone-fold
MASP2	10747	genome.wustl.edu	37	1	11087403	11087403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006610.2	-1	reviewed	p.A534T	1.000	354	0%	361	28.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MASP2	10747	genome.wustl.edu	37	1	11097811	11097811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006610.2	-1	reviewed	p.A316D	0.305	40	0%	45	24.4%	0	-	benign(0.019)	tolerated(0.19)	neutral(0.051)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
EXOSC10	5394	genome.wustl.edu	37	1	11147599	11147599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001998.1	-1	validated	p.S332Y	1.000	207	0.5%	231	26.4%	49	46.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_3_5_exonuc,HMMSmart_SM00474,superfamily_Ribonuclease H-like
MTOR	2475	genome.wustl.edu	37	1	11206811	11206811	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004958.3	-1	reviewed	p.I1536	1.000	94	0%	72	30.6%	11	72.7%	-	-	-	HMMPfam_FAT,superfamily_ARM-type_fold,superfamily_SSF48452
UBIAD1	29914	genome.wustl.edu	37	1	11346073	11346073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013319.2	+1	reviewed	p.R301Q	1.000	452	0%	492	33.1%	23	65.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UbiA
MTHFR	4524	genome.wustl.edu	37	1	11851348	11851348	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005957.4	-1	reviewed	p.P556	1.000	45	0%	47	40.4%	9	33.3%	-	-	-	NULL
CLCN6	1185	genome.wustl.edu	37	1	11883876	11883876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001286.2	+1	reviewed	p.F189S	1.000	132	0%	102	29.4%	0	-	probably_damaging(0.998)	tolerated(0.55)	deleterious(0.481)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
VPS13D	55187	genome.wustl.edu	37	1	12317133	12317133	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015378.2	+1	reviewed	p.A310	0.001	109	0%	126	31.7%	0	-	-	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12338060	12338060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015378.2	+1	reviewed	p.R1472Q	1.000	279	0%	225	32.9%	1	0%	probably_damaging(0.981)	tolerated(0.59)	neutral(0.430)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12343196	12343196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015378.2	+1	reviewed	p.K1679N	0.959	452	0%	481	37.4%	2	50%	benign(0.06)	tolerated(0.43)	neutral(0.018)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12382644	12382644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015378.2	+1	reviewed	p.F2586L	1.000	188	0%	168	33.3%	0	-	probably_damaging(0.958)	tolerated(0.13)	deleterious(0.654)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12438521	12438521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015378.2	+1	reviewed	p.T3653A	0.412	121	0%	98	35.7%	1	100%	benign(0.015)	tolerated(0.46)	neutral(0.013)	NULL
AADACL3	126767	genome.wustl.edu	37	1	12785212	12785212	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001103170.1	+1	validated	p.K101T	0.000	394	0%	347	33.1%	0	-	benign(0.389)	tolerated(0.07)	neutral(0.444)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
PRAMEF1	65121	genome.wustl.edu	37	1	12855950	12855950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023013.1	+1	provisional	p.E410D	0.006	730	0%	717	27.9%	0	-	benign(0.08)	deleterious(0.01)	neutral(0.411)	superfamily_SSF52047
PRAMEF11	440560	genome.wustl.edu	37	1	12887406	12887406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000331684	-1	known	p.P151S	0.000	1152	0%	1380	33.2%	0	-	benign(0.01)	tolerated(0.05)	neutral(0.346)	superfamily_SSF52047
PRAMEF10	343071	genome.wustl.edu	37	1	12955534	12955534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039361.3	-1	validated	p.F49V	0.000	115	0%	114	49.1%	0	-	benign(0.069)	tolerated(0.42)	neutral(0.018)	NULL
PRAMEF18	391003	genome.wustl.edu	37	1	13474910	13474910	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099850.1	-1	validated	p.L407V	0.000	475	0%	390	18.7%	0	-	possibly_damaging(0.744)	tolerated(0.07)	deleterious(0.592)	superfamily_SSF52047
KAZ	23254	genome.wustl.edu	37	1	15287359	15287359	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201628.2	+1	validated	p.E136*	1.000	22	0%	17	41.2%	11	0%	-	-	-	NULL
DNAJC16	23341	genome.wustl.edu	37	1	15874785	15874785	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015291.2	+1	provisional	p.K295N	0.992	131	0%	96	36.5%	3	33.3%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	superfamily_Thioredoxin-like
DNAJC16	23341	genome.wustl.edu	37	1	15888819	15888819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015291.2	+1	provisional	p.A446V	0.657	161	0%	173	33.5%	8	50%	benign(0.121)	tolerated(0.31)	neutral(0.036)	NULL
AGMAT	79814	genome.wustl.edu	37	1	15905466	15905466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024758.3	-1	validated	p.A203V	1.000	36	0%	31	45.2%	5	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Arginase,superfamily_SSF52768
DDI2	84301	genome.wustl.edu	37	1	15957014	15957014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032341.3	+1	provisional	p.R155C	1.000	143	0%	173	31.2%	1	100%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
SPEN	23013	genome.wustl.edu	37	1	16200652	16200652	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000375753	+1	known	p.E15*	1.000	144	0%	172	30.2%	0	-	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16247445	16247445	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015001.2	+1	reviewed	p.T572	1.000	89	0%	73	23.3%	1	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
EPHA2	1969	genome.wustl.edu	37	1	16475362	16475362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004431.3	-1	reviewed	p.A112T	0.987	56	0%	39	15.4%	24	33.3%	benign(0.048)	tolerated(0.39)	neutral(0.019)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
NBPF1	55672	genome.wustl.edu	37	1	16905891	16905891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017940.3	-1	predicted	p.G533D	0.232	1094	0.1%	1004	6.5%	2	0%	-	-	-	NULL
MFAP2	4237	genome.wustl.edu	37	1	17301829	17301829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002403.3	-1	reviewed	p.R128H	0.990	38	0%	39	46.2%	243	25.9%	possibly_damaging(0.807)	deleterious(0)	deleterious(0.748)	HMMPfam_MAGP
PADI3	51702	genome.wustl.edu	37	1	17601154	17601154	+	Missense_Mutation	SNP	C	C	T	rs190222448	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016233.2	+1	reviewed	p.R394W	0.937	61	0%	46	34.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAD,superfamily_SSF55909
IGSF21	84966	genome.wustl.edu	37	1	18691886	18691886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032880.3	+1	validated	p.R237Q	0.993	109	0%	134	32.1%	3	0%	benign(0.074)	tolerated(0.46)	neutral(0.017)	superfamily_SSF48726
PAX7	5081	genome.wustl.edu	37	1	19071355	19071355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135254.1	+1	reviewed	p.R484C	0.942	10	0.000	9	0.556	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAS1R2	80834	genome.wustl.edu	37	1	19166951	19166951	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152232.2	-1	validated	p.R554	0.731	58	0%	78	29.5%	0	-	-	-	-	NULL
HTR6	3362	genome.wustl.edu	37	1	19992562	19992562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000871.1	+1	provisional	p.D106N	1.000	95	0%	67	38.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OTUD3	23252	genome.wustl.edu	37	1	20224099	20224099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015207.1	+1	validated	p.D184N	1.000	105	0%	116	33.6%	0	-	possibly_damaging(0.892)	tolerated(0.62)	neutral(0.355)	superfamily_SSF54001
PLA2G5	5322	genome.wustl.edu	37	1	20416366	20416366	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000929.2	+1	reviewed	p.F90	0.000	51	0%	53	35.8%	1	0%	-	-	-	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
PLA2G2D	26279	genome.wustl.edu	37	1	20440660	20440660	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012400.2	-1	provisional	p.R129*	0.000	34	0%	32	21.9%	1	0%	-	-	-	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
PLA2G2C	391013	genome.wustl.edu	37	1	20499297	20499297	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000429261	-1	known	p.A84V	0.007	72	0%	63	25.4%	0	-	-	-	-	HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2
PINK1	65018	genome.wustl.edu	37	1	20964487	20964487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032409.2	+1	reviewed	p.Q180	0.181	93	0%	80	37.5%	33	39.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
DDOST	1650	genome.wustl.edu	37	1	20982214	20982214	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005216.4	-1	reviewed	p.T154	0.131	191	0%	221	23.5%	489	38%	-	-	-	HMMPfam_DDOST_48kD
HP1BP3	50809	genome.wustl.edu	37	1	21091910	21091910	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016287.3	-1	validated	p.Y284D	1.000	204	0%	157	26.8%	20	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
USP48	84196	genome.wustl.edu	37	1	22041927	22041927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032236.5	-1	reviewed	p.E640*	1.000	79	0%	66	36.4%	8	0%	-	-	-	NULL
HSPG2	3339	genome.wustl.edu	37	1	22207931	22207931	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005529.5	-1	reviewed	p.R553*	0.982	63	0%	46	26.1%	10	0%	-	-	-	NULL
EPHA8	2046	genome.wustl.edu	37	1	22923940	22923940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020526.3	+1	reviewed	p.R634M	1.000	25	0%	18	38.9%	0	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	superfamily_Kinase_like
C1QA	712	genome.wustl.edu	37	1	22964130	22964130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015991.2	+1	reviewed	p.W7C	1.000	37	0%	27	14.8%	39	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C1QB	713	genome.wustl.edu	37	1	22986015	22986015	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000491.3	+1	reviewed	p.I22	0.000	197	0%	169	29.6%	200	0%	-	-	-	NULL
LUZP1	7798	genome.wustl.edu	37	1	23418970	23418970	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142546.1	-1	reviewed	p.P595	0.000	362	0%	427	35.8%	6	33.3%	-	-	-	NULL
PITHD1	57095	genome.wustl.edu	37	1	24112859	24112859	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020362.4	+1	validated	p.F160	1.000	52	0%	62	24.2%	28	46.4%	-	-	-	HMMPfam_DUF1000
IL22RA1	58985	genome.wustl.edu	37	1	24447366	24447366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021258.2	-1	reviewed	p.D552Y	0.004	90	0%	86	20.9%	2	0%	possibly_damaging(0.66)	deleterious(0)	deleterious(0.677)	NULL
GRHL3	57822	genome.wustl.edu	37	1	24664219	24664219	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021180.2	+1	reviewed	p.P265	0.003	54	0%	52	28.8%	0	-	-	-	-	HMMPfam_CP2
C1orf201	90529	genome.wustl.edu	37	1	24727861	24727861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000437986	-1	known	p.Q6H	0.001	106	0%	81	23.5%	5	60%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
NIPAL3	57185	genome.wustl.edu	37	1	24746101	24746101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020448.4	+1	validated	p.A22T	0.000	36	0%	31	41.9%	12	58.3%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
NIPAL3	57185	genome.wustl.edu	37	1	24768670	24768670	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020448.4	+1	validated	p.F96	0.976	85	0%	63	33.3%	4	75%	-	-	-	HMMPfam_DUF803
C1orf63	57035	genome.wustl.edu	37	1	25570093	25570093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020317.3	-1	validated	p.R235Q	0.639	127	0%	97	37.1%	14	28.5%	possibly_damaging(0.581)	deleterious(0.05)	deleterious(0.545)	NULL
RHCE	6006	genome.wustl.edu	37	1	25718594	25718594	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020485.3	-1	reviewed	p.F175	0.997	225	0%	220	30.9%	1	0%	-	-	-	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
TMEM57	55219	genome.wustl.edu	37	1	25785170	25785170	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018202.4	+1	validated	p.S314*	1.000	508	0%	473	30.9%	13	7.6%	-	-	-	HMMPfam_Macoilin
MAN1C1	57134	genome.wustl.edu	37	1	26109103	26109103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020379.2	+1	validated	p.A560T	0.116	71	0%	71	29.6%	4	0%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
SEPN1	57190	genome.wustl.edu	37	1	26136208	26136208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000354177	+1	known	p.D269N	0.544	36	0%	33	30.3%	21	33.3%	benign(0.01)	tolerated(0.84)	neutral(0.001)	NULL
SEPN1	57190	genome.wustl.edu	37	1	26140411	26140411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000354177	+1	known	p.S442L	1.000	100	0%	79	26.6%	28	14.2%	benign(0.002)	tolerated(0.4)	neutral(0.016)	NULL
CATSPER4	378807	genome.wustl.edu	37	1	26517128	26517128	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198137.1	+1	validated	p.N4H	0.000	12	0%	15	26.7%	0	-	possibly_damaging(0.69)	deleterious(0.01)	deleterious(0.653)	NULL
SH3BGRL3	83442	genome.wustl.edu	37	1	26607563	26607563	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031286.3	+1	validated	p.F77	1.000	38	0%	18	61.1%	879	26.3%	-	-	-	HMMPfam_SH3BGR,superfamily_Thioredoxin-like
UBXN11	91544	genome.wustl.edu	37	1	26610676	26610676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183008.2	-1	reviewed	p.G345D	1.000	156	0%	105	32.4%	49	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF683	257101	genome.wustl.edu	37	1	26691430	26691430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114759.1	-1	validated	p.P203S	0.025	63	0%	63	27%	2	0%	unknown(0)	deleterious(0)	-	NULL
ZNF683	257101	genome.wustl.edu	37	1	26691694	26691694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114759.1	-1	validated	p.A115T	0.000	20	0%	10	60%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27058068	27058068	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006015.4	+1	reviewed	p.Y592*	0.997	264	0%	199	28.1%	10	0%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006015.4	+1	reviewed	p.R1989*	1.000	282	0.4%	263	31.6%	32	75%	-	-	-	NULL
NR0B2	8431	genome.wustl.edu	37	1	27240179	27240179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021969.2	-1	reviewed	p.R85W	0.180	45	2.2%	48	22.9%	0	-	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
C1orf172	126695	genome.wustl.edu	37	1	27278385	27278385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152365.2	-1	validated	p.D163N	1.000	18	0%	30	36.7%	18	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LOC440577	440577	genome.wustl.edu	37	1	27533676	27533676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_496355.5	+1	model	p.T82S	0.987	115	0%	119	25.2%	0	-	-	-	-	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain
AHDC1	27245	genome.wustl.edu	37	1	27874532	27874532	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029882.2	-1	validated	p.C1365	1.000	30	0%	16	37.5%	25	40%	-	-	-	NULL
OPRD1	4985	genome.wustl.edu	37	1	29185812	29185812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000911.3	+1	validated	p.R192W	1.000	41	0%	67	25.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EPB41	2035	genome.wustl.edu	37	1	29342238	29342238	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203343.2	+1	reviewed	p.F253L	1.000	132	0%	123	13%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_B41,superfamily_SSF54236
EPB41	2035	genome.wustl.edu	37	1	29365900	29365900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203343.2	+1	reviewed	p.R498H	1.000	114	0%	128	37.5%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FA,superfamily_SSF50729
MECR	51102	genome.wustl.edu	37	1	29528456	29528456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016011.2	-1	validated	p.K252R	1.000	339	0%	356	35.1%	15	6.6%	possibly_damaging(0.546)	deleterious(0.03)	deleterious(0.550)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
SPOCD1	90853	genome.wustl.edu	37	1	32256441	32256442	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144569.4	-1	provisional	p.H1138fs	0.999:0.997	-	-	-	-	-	-	-	-	-	NULL
KPNA6	23633	genome.wustl.edu	37	1	32625024	32625024	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012316.4	+1	reviewed	p.T150	0.576	177	0%	184	29.9%	5	40%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
TXLNA	200081	genome.wustl.edu	37	1	32650159	32650159	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175852.3	+1	validated	p.N180T	1.000	119	0%	120	32.5%	9	22.2%	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	HMMPfam_Taxilin
LCK	3932	genome.wustl.edu	37	1	32740586	32740586	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000373564	+1	known	p.V118	0.778	146	0%	174	33.3%	0	-	-	-	-	superfamily_SH3
TSSK3	81629	genome.wustl.edu	37	1	32828395	32828395	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052841.3	+1	reviewed	p.K31N	1.000	220	0%	182	18.7%	0	-	benign(0.429)	tolerated(0.25)	neutral(0.177)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ADC	113451	genome.wustl.edu	37	1	33585656	33585656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052998.2	+1	validated	p.R419Q	0.068	127	0%	134	35.1%	9	0%	benign(0.002)	tolerated(0.87)	neutral(0.001)	superfamily_Alanine racemase C-terminal domain-like
ZSCAN20	7579	genome.wustl.edu	37	1	33955121	33955121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145238.3	+1	validated	p.A229T	0.957	82	0%	61	13.1%	0	-	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
ZSCAN20	7579	genome.wustl.edu	37	1	33960385	33960385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145238.3	+1	validated	p.R814I	0.992	688	0%	614	28.5%	1	0%	benign(0.203)	deleterious(0.01)	neutral(0.425)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CSMD2	114784	genome.wustl.edu	37	1	34076780	34076780	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052896.3	-1	validated	p.P2028	0.108	121	0%	114	28.9%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD2	114784	genome.wustl.edu	37	1	34102148	34102148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052896.3	-1	validated	p.P1554L	1.000	56	0%	49	32.7%	0	-	probably_damaging(0.998)	tolerated(0.81)	deleterious(0.475)	superfamily_Spermadhesin CUB domain
CSMD2	114784	genome.wustl.edu	37	1	34204922	34204922	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052896.3	-1	validated	p.N689	0.265	86	0%	63	23.8%	0	-	-	-	-	superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain
HMGB4	127540	genome.wustl.edu	37	1	34329990	34329990	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145205.4	+1	validated	p.L66	0.047	133	0%	122	18%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
CSMD2	114784	genome.wustl.edu	37	1	34383824	34383824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052896.3	-1	validated	p.N224I	1.000	64	0%	48	20.8%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZMYM6	9204	genome.wustl.edu	37	1	35453310	35453310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007167.3	-1	validated	p.E1125K	0.997	13	0%	15	26.7%	3	33.3%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35579264	35579264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024772.3	+1	validated	p.F611L	1.000	82	0%	94	25.5%	3	0%	probably_damaging(0.987)	tolerated(0.62)	neutral(0.441)	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35580326	35580326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024772.3	+1	validated	p.I965M	0.995	73	0%	76	31.6%	0	-	benign(0.417)	tolerated(0.08)	neutral(0.435)	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35824900	35824900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005095.2	+1	validated	p.D154Y	1.000	105	0%	93	31.2%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35824975	35824975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005095.2	+1	validated	p.R179C	1.000	108	0%	85	30.6%	5	20%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35855612	35855612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005095.2	+1	validated	p.E834K	0.999	120	0%	94	37.2%	8	12.5%	benign(0.138)	tolerated(0.15)	neutral(0.253)	HMMPfam_zf-FCS,HMMSmart_SM00746
NCDN	23154	genome.wustl.edu	37	1	36024804	36024804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014839.1	+1	reviewed	p.R44C	1.000	50	0%	39	41%	4	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Neurochondrin
TFAP2E	339488	genome.wustl.edu	37	1	36055544	36055544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178548.3	+1	validated	p.N267H	1.000	156	0%	133	28.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TF_AP-2
EIF2C4	192670	genome.wustl.edu	37	1	36297437	36297437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017629.2	+1	reviewed	p.R341*	1.000	193	0%	121	28.9%	0	-	-	-	-	HMMPfam_PAZ,superfamily_PAZ domain
EIF2C1	26523	genome.wustl.edu	37	1	36354152	36354152	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012199.2	+1	reviewed	p.I50	0.998	237	0%	213	30%	1	100%	-	-	-	superfamily_PAZ domain
THRAP3	9967	genome.wustl.edu	37	1	36755130	36755130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005119.3	+1	validated	p.R504W	0.999	343	0%	394	34.3%	36	41.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
STK40	83931	genome.wustl.edu	37	1	36820009	36820009	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032017.1	-1	provisional	p.I193	0.915	86	0%	61	36.1%	20	35%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STK40	83931	genome.wustl.edu	37	1	36826893	36826893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032017.1	-1	provisional	p.S14L	1.000	111	0%	111	28.8%	12	16.6%	benign(0.021)	tolerated(0.26)	neutral(0.035)	NULL
GRIK3	2899	genome.wustl.edu	37	1	37324798	37324798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000831.3	-1	reviewed	p.R339W	1.000	54	0%	46	34.8%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_ANF_receptor,superfamily_SSF53822
INPP5B	3633	genome.wustl.edu	37	1	38328018	38328018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005540.2	-1	reviewed	p.F904C	1.000	91	0%	95	38.9%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SF3A3	10946	genome.wustl.edu	37	1	38435314	38435314	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006802.2	-1	reviewed	p.S367R	1.000	300	0%	305	25.6%	85	32.9%	probably_damaging(0.978)	tolerated(0.48)	neutral(0.431)	NULL
UTP11L	51118	genome.wustl.edu	37	1	38489295	38489295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016037.3	+1	validated	p.R253C	1.000	90	0%	102	30.4%	38	60.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Utp11
POU3F1	5453	genome.wustl.edu	37	1	38511642	38511642	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002699.3	-1	validated	p.F258	1.000	31	0%	23	52.2%	0	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
RRAGC	64121	genome.wustl.edu	37	1	39321416	39321416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022157.2	-1	provisional	p.D202G	1.000	271	0%	221	24%	19	63.1%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMPfam_Gtr1_RagA,superfamily_SSF52540
GJA9	81025	genome.wustl.edu	37	1	39340690	39340690	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030772.3	-1	provisional	p.E361*	0.994	120	0%	131	36.6%	0	-	-	-	-	NULL
GJA9	81025	genome.wustl.edu	37	1	39341673	39341673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030772.3	-1	provisional	p.R33Q	1.000	408	0%	345	31.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Connexin
MACF1	23499	genome.wustl.edu	37	1	39776096	39776096	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000372925	+1	known	p.E171*	1.000	111	0%	116	34.5%	0	-	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39801805	39801805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033044.2	+1	reviewed	p.R1622I	0.045	293	0%	231	33.8%	0	-	possibly_damaging(0.923)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39812692	39812692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033044.2	+1	reviewed	p.A1982V	0.944	234	0%	152	28.9%	0	-	possibly_damaging(0.659)	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39827282	39827282	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033044.2	+1	reviewed	p.K2675T	0.998	195	0%	213	34.3%	1	0%	possibly_damaging(0.501)	tolerated(0.27)	neutral(0.201)	HMMSmart_SPEC
KIAA0754	643314	genome.wustl.edu	37	1	39877214	39877214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015038.1	+1	predicted	p.D426V	0.001	298	0%	284	32.4%	2	0%	unknown(0)	deleterious(0.02)	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39889725	39889725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033044.2	+1	reviewed	p.R3832Q	1.000	248	0%	290	33.8%	3	66.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39896382	39896382	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000372925	+1	known	p.E2655*	1.000	54	0%	43	18.6%	10	60%	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39906689	39906689	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000372925	+1	known	p.D3099N	1.000	129	0%	95	27.4%	12	50%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39913518	39913518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033044.2	+1	reviewed	p.R5082Q	1.000	191	0%	142	18.3%	20	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39926400	39926400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033044.2	+1	reviewed	p.R5596C	1.000	119	0%	120	27.5%	64	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
MACF1	23499	genome.wustl.edu	37	1	39927585	39927585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033044.2	+1	reviewed	p.A5628V	1.000	294	0.3%	276	31.5%	42	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
OXCT2	64064	genome.wustl.edu	37	1	40235541	40235541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022120.1	-1	provisional	p.V463M	0.843	124	0%	119	12.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CoA_trans,superfamily_SSF100950
CAP1	10487	genome.wustl.edu	37	1	40531962	40531962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105530.1	+1	reviewed	p.F200L	1.000	80	0%	63	25.4%	163	40.4%	benign(0.023)	tolerated(0.06)	neutral(0.324)	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP
SMAP2	64744	genome.wustl.edu	37	1	40875448	40875448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022733.1	+1	provisional	p.R115*	1.000	119	0%	102	27.5%	6	0%	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
ZNF643	65243	genome.wustl.edu	37	1	40929140	40929140	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000411995	+1	known	p.E468*	0.999	209	0%	239	26.4%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF642	339559	genome.wustl.edu	37	1	40960983	40960983	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198494.2	+1	validated	p.K278T	0.983	120	0%	149	32.2%	1	0%	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF642	339559	genome.wustl.edu	37	1	40961389	40961389	+	Silent	SNP	C	C	T	rs187272521	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198494.2	+1	validated	p.C413	0.040	123	0%	158	32.9%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DEM1	64789	genome.wustl.edu	37	1	40980305	40980305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022774.1	+1	provisional	p.D30G	0.986	163	0%	162	34.6%	5	60%	benign(0.029)	deleterious(0.04)	neutral(0.350)	NULL
DEM1	64789	genome.wustl.edu	37	1	40981073	40981073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022774.1	+1	provisional	p.V286A	0.945	209	0%	155	34.8%	3	0%	benign(0)	tolerated(1)	-	HMMPfam_Morph_protein1
ZNF684	127396	genome.wustl.edu	37	1	41006374	41006374	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152373.3	+1	validated	p.L44	0.950	147	0%	175	27.4%	5	40%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF684	127396	genome.wustl.edu	37	1	41013104	41013104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152373.3	+1	validated	p.L370R	0.156	136	0%	177	36.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CTPS	1503	genome.wustl.edu	37	1	41454346	41454346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001905.2	+1	validated	p.E173D	1.000	210	0%	232	24.6%	17	58.8%	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_CTP_synth_N,superfamily_SSF52540
SCMH1	22955	genome.wustl.edu	37	1	41579033	41579033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031694.2	-1	validated	p.R213C	1.000	243	0%	197	36.5%	10	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
HIVEP3	59269	genome.wustl.edu	37	1	41990565	41990565	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024503.3	-1	validated	p.E1742*	1.000	38	0%	28	35.7%	3	0%	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42048309	42048309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024503.3	-1	validated	p.S720R	1.000	149	0%	110	30%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42048938	42048938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024503.3	-1	validated	p.S511P	0.798	100	0%	72	26.4%	1	0%	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
GUCA2A	2980	genome.wustl.edu	37	1	42629141	42629141	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033553.2	-1	validated	p.P72	0.000	35	0%	37	32.4%	0	-	-	-	-	HMMPfam_Guanylin,superfamily_Proguanylin
RIMKLA	284716	genome.wustl.edu	37	1	42880437	42880437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173642.3	+1	validated	p.K323T	1.000	152	0%	160	30.6%	2	50%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43004960	43004960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080850.2	+1	validated	p.E78D	1.000	307	0%	226	22.1%	0	-	possibly_damaging(0.741)	deleterious(0)	deleterious(0.716)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43032110	43032110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080850.2	+1	validated	p.K273N	1.000	187	0%	194	33.5%	1	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
PPIH	10465	genome.wustl.edu	37	1	43130577	43130577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006347.3	+1	reviewed	p.A96E	1.000	102	0%	90	27.8%	86	33.7%	benign(0)	tolerated(1)	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
LEPRE1	64175	genome.wustl.edu	37	1	43213442	43213442	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022356.3	-1	reviewed	p.F622	0.707	155	0%	133	31.6%	71	9.8%	-	-	-	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
ERMAP	114625	genome.wustl.edu	37	1	43308309	43308309	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017922.1	+1	reviewed	p.F278	0.000	241	0%	236	11.4%	3	0%	-	-	-	HMMSmart_PRY
ZNF691	51058	genome.wustl.edu	37	1	43317577	43317577	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000372503	+1	known	p.L298	0.004	46	0%	48	43.8%	8	37.5%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
EBNA1BP2	10969	genome.wustl.edu	37	1	43634651	43634651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006824.2	-1	validated	p.K166Q	1.000	549	0%	471	28.9%	201	46.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Ebp2
WDR65	149465	genome.wustl.edu	37	1	43675431	43675431	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152498.3	+1	validated	p.S591	0.392	132	0%	170	34.7%	0	-	-	-	-	superfamily_WD40_like
ELOVL1	64834	genome.wustl.edu	37	1	43830011	43830011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022821.2	-1	validated	p.M201T	1.000	202	0%	237	31.2%	255	42.3%	benign(0.245)	deleterious(0)	deleterious(0.470)	HMMPfam_ELO
SZT2	23334	genome.wustl.edu	37	1	43908279	43908279	+	Missense_Mutation	SNP	G	G	A	rs192016258	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015284.2	+1	predicted	p.R1815Q	0.968	288	0%	223	31.4%	6	16.6%	probably_damaging(0.995)	tolerated(0.81)	neutral(0.458)	NULL
SZT2	23334	genome.wustl.edu	37	1	43912750	43912750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015284.2	+1	predicted	p.R2167Q	1.000	27	0%	25	24%	3	66.6%	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	NULL
PTPRF	5792	genome.wustl.edu	37	1	44083138	44083138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002840.3	+1	reviewed	p.F1365S	1.000	146	0%	119	27.7%	152	44%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ST3GAL3	6487	genome.wustl.edu	37	1	44280571	44280571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174963.2	+1	reviewed	p.R74W	0.998	587	0%	426	27%	3	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ST3GAL3	6487	genome.wustl.edu	37	1	44386140	44386140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174963.2	+1	reviewed	p.R339Q	1.000	115	0%	182	13.7%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
B4GALT2	8704	genome.wustl.edu	37	1	44456098	44456098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005417.1	+1	reviewed	p.P366L	0.966	136	0%	112	41.1%	98	53%	benign(0.009)	deleterious(0.02)	neutral(0.384)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
CCDC24	149473	genome.wustl.edu	37	1	44461274	44461274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152499.1	+1	provisional	p.R185H	0.863	46	0%	32	28.1%	36	50%	probably_damaging(0.98)	tolerated(0.42)	neutral(0.438)	NULL
SLC6A9	6536	genome.wustl.edu	37	1	44466899	44466899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201649.2	-1	validated	p.K497N	1.000	223	0%	171	29.8%	23	43.4%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_SNF
KIF2C	11004	genome.wustl.edu	37	1	45225001	45225001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006845.3	+1	validated	p.D450N	0.981	41	0%	31	35.5%	32	43.7%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
SNORD46	94161	genome.wustl.edu	37	1	45242180	45242180	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_000024.2	+1	provisional	NULL	0.008	117	0%	156	30.8%	0	-	-	-	-	-
RPS8	6202	genome.wustl.edu	37	1	45243675	45243675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012.1	+1	reviewed	p.P131S	1.000	74	0%	69	31.9%	2761	39.1%	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_Ribosomal_S8e
HECTD3	79654	genome.wustl.edu	37	1	45472633	45472633	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024602.5	-1	validated	p.I537	1.000	85	0%	105	39%	18	33.3%	-	-	-	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
ZSWIM5	57643	genome.wustl.edu	37	1	45504721	45504721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020883.1	-1	validated	p.T594I	1.000	73	0%	90	31.1%	0	-	possibly_damaging(0.675)	tolerated(0.26)	neutral(0.273)	NULL
ZSWIM5	57643	genome.wustl.edu	37	1	45506126	45506126	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020883.1	-1	validated	p.I565S	1.000	65	0%	62	29%	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
HPDL	84842	genome.wustl.edu	37	1	45793425	45793425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032756.2	+1	validated	p.E202G	0.992	58	0%	60	28.3%	3	0%	benign(0.141)	tolerated(0.11)	neutral(0.284)	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
TESK2	10420	genome.wustl.edu	37	1	45923441	45923441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007170.2	-1	reviewed	p.R6L	1.000	352	0%	343	30.6%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
AKR1A1	10327	genome.wustl.edu	37	1	46035586	46035586	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006066.2	+1	reviewed	p.R312	1.000	133	0%	145	31.7%	226	50.8%	-	-	-	superfamily_NAD(P)-linked oxidoreductase
IPP	3652	genome.wustl.edu	37	1	46193465	46193465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005897.2	-1	reviewed	p.Y296H	1.000	166	0%	144	30.6%	2	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
IPP	3652	genome.wustl.edu	37	1	46206618	46206618	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005897.2	-1	reviewed	p.R227*	1.000	138	0%	129	34.9%	7	28.5%	-	-	-	HMMPfam_BACK
MAST2	23139	genome.wustl.edu	37	1	46487717	46487717	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015112.2	+1	validated	p.I462	1.000	199	0%	199	29.1%	8	62.5%	-	-	-	HMMPfam_DUF1908
MAST2	23139	genome.wustl.edu	37	1	46500561	46500561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015112.2	+1	validated	p.S1407L	1.000	194	0%	133	33.8%	28	25%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
PIK3R3	8503	genome.wustl.edu	37	1	46521556	46521556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114172.1	-1	validated	p.Q284H	1.000	167	0%	140	27.9%	29	37.9%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
RAD54L	8438	genome.wustl.edu	37	1	46740345	46740345	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142548.1	+1	reviewed	p.R609*	1.000	281	0%	293	27.6%	5	0%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
NSUN4	387338	genome.wustl.edu	37	1	46827307	46827307	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199044.2	+1	validated	p.L315*	1.000	246	0%	270	32.2%	17	52.9%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DMBX1	127343	genome.wustl.edu	37	1	46976279	46976279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147192.2	+1	reviewed	p.R101C	1.000	73	0%	45	31.1%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
KIAA0494	9813	genome.wustl.edu	37	1	47144187	47144187	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014774.2	-1	validated	p.S478	0.116	216	0%	200	17%	22	9%	-	-	-	NULL
STIL	6491	genome.wustl.edu	37	1	47746208	47746208	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001048166.1	-1	reviewed	p.S641*	0.001	447	0%	363	33.6%	3	0%	-	-	-	NULL
STIL	6491	genome.wustl.edu	37	1	47767909	47767909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001048166.1	-1	reviewed	p.E88K	1.000	47	0%	39	35.9%	2	50%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
STIL	6491	genome.wustl.edu	37	1	47767983	47767983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001048166.1	-1	reviewed	p.R63Q	0.976	73	0%	73	32.9%	1	100%	benign(0.062)	deleterious(0)	neutral(0.449)	NULL
SLC5A9	200010	genome.wustl.edu	37	1	48690420	48690420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135181.1	+1	validated	p.T63A	1.000	179	0%	165	29.7%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
BEND5	79656	genome.wustl.edu	37	1	49202000	49202000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024603.2	-1	validated	p.N340S	1.000	429	0.2%	366	28.4%	3	33.3%	possibly_damaging(0.794)	tolerated(0.19)	neutral(0.347)	HMMPfam_BEN
FAF1	11124	genome.wustl.edu	37	1	51005293	51005293	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007051.2	-1	reviewed	p.S459*	1.000	42	0%	36	36.1%	35	0%	-	-	-	HMMSmart_SM00594
FAF1	11124	genome.wustl.edu	37	1	51323642	51323642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007051.2	-1	reviewed	p.E25K	1.000	202	0%	160	36.2%	6	0%	unknown(0)	deleterious(0.01)	-	NULL
CDKN2C	1031	genome.wustl.edu	37	1	51436162	51436162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001262.2	+1	reviewed	p.A41V	1.000	81	0%	48	33.3%	22	36.3%	possibly_damaging(0.945)	deleterious(0.04)	deleterious(0.738)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CDKN2C	1031	genome.wustl.edu	37	1	51439631	51439631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001262.2	+1	reviewed	p.K66E	1.000	91	0%	63	31.7%	8	62.5%	benign(0.034)	tolerated(0.5)	neutral(0.012)	HMMPfam_Ank,superfamily_Ankyrin repeat
NRD1	4898	genome.wustl.edu	37	1	52256640	52256640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002525.2	-1	validated	p.I1063V	1.000	88	0%	63	22.2%	133	42.1%	possibly_damaging(0.896)	deleterious(0.01)	deleterious(0.759)	HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd
NRD1	4898	genome.wustl.edu	37	1	52269502	52269502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002525.2	-1	validated	p.F834S	1.000	113	0.9%	122	33.6%	71	40.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Metalloenz_metal-bd
NRD1	4898	genome.wustl.edu	37	1	52275032	52275032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002525.2	-1	validated	p.E717K	0.977	300	0%	297	31%	50	38%	benign(0.01)	tolerated(0.48)	neutral(0.011)	NULL
NRD1	4898	genome.wustl.edu	37	1	52293535	52293535	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002525.2	-1	validated	p.A359	0.862	117	0%	73	27.4%	33	39.3%	-	-	-	superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16
ZFYVE9	9372	genome.wustl.edu	37	1	52703621	52703621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004799.2	+1	reviewed	p.M178V	0.993	163	0%	135	22.2%	1	0%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
PRPF38A	84950	genome.wustl.edu	37	1	52870538	52870538	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032864.3	+1	validated	p.C39*	0.998	90	0%	77	28.6%	28	53.5%	-	-	-	HMMPfam_PRP38
ZYG11B	79699	genome.wustl.edu	37	1	53236989	53236989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024646.2	+1	validated	p.R165Q	1.000	159	0.6%	165	38.8%	0	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	superfamily_ARM repeat,superfamily_RNI-like
ZYG11B	79699	genome.wustl.edu	37	1	53237393	53237393	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024646.2	+1	validated	p.L300V	1.000	225	0%	190	23.7%	6	66.6%	possibly_damaging(0.799)	tolerated(0.34)	neutral(0.324)	superfamily_ARM repeat
SCP2	6342	genome.wustl.edu	37	1	53407488	53407488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002979.3	+1	reviewed	p.E30D	0.775	148	0%	137	30.7%	6	33.3%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
PODN	127435	genome.wustl.edu	37	1	53537224	53537224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153703.3	+1	validated	p.K158N	1.000	14	0%	14	28.6%	8	0%	benign(0.116)	tolerated(0.29)	neutral(0.038)	superfamily_SSF52058
PODN	127435	genome.wustl.edu	37	1	53546492	53546492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153703.3	+1	validated	p.S583R	0.299	32	0%	30	26.7%	6	0%	possibly_damaging(0.891)	deleterious(0.03)	deleterious(0.715)	HMMPfam_LRR_1,superfamily_SSF52047
DIO1	1733	genome.wustl.edu	37	1	54360102	54360102	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039715.1	+1	reviewed	p.F73	0.920	224	0%	226	31%	0	-	-	-	-	HMMPfam_T4_deiodinase
LRRC42	115353	genome.wustl.edu	37	1	54418120	54418120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052940.3	+1	provisional	p.L150F	1.000	93	0%	127	25.2%	35	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
TCEANC2	127428	genome.wustl.edu	37	1	54562073	54562073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153035.1	+1	predicted	p.R185Q	0.986	89	0%	76	28.9%	2	50%	benign(0.014)	tolerated(0.13)	neutral(0.253)	NULL
FAM151A	338094	genome.wustl.edu	37	1	55075025	55075025	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176782.2	-1	validated	p.A558	1.000	54	0%	83	32.5%	6	33.3%	-	-	-	NULL
HEATR8	374977	genome.wustl.edu	37	1	55119197	55119197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039464.2	+1	validated	p.A200S	0.002	383	0%	411	32.8%	0	-	benign(0.253)	deleterious(0.02)	neutral(0.409)	NULL
HEATR8	374977	genome.wustl.edu	37	1	55148422	55148422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039464.2	+1	validated	p.E825D	1.000	100	0%	72	31.9%	0	-	benign(0.008)	tolerated(0.33)	neutral(0.024)	superfamily_ARM repeat
TMEM61	199964	genome.wustl.edu	37	1	55452088	55452088	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182532.1	+1	provisional	p.T112P	0.971	87	0%	74	39.2%	9	33.3%	probably_damaging(0.996)	-	-	NULL
PRKAA2	5563	genome.wustl.edu	37	1	57140116	57140116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006252.3	+1	validated	p.R53C	1.000	323	0%	293	28%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PRKAA2	5563	genome.wustl.edu	37	1	57171819	57171819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006252.3	+1	validated	p.Y450H	1.000	121	0%	100	29%	1	100%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
C8A	731	genome.wustl.edu	37	1	57333291	57333291	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000562.2	+1	reviewed	p.R29	0.741	173	0%	150	26.7%	0	-	-	-	-	NULL
TM2D1	83941	genome.wustl.edu	37	1	62190631	62190631	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032027.2	-1	reviewed	p.G54	1.000	35	0%	39	33.3%	20	25%	-	-	-	NULL
L1TD1	54596	genome.wustl.edu	37	1	62672398	62672398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019079.4	+1	validated	p.T33I	0.001	22	0%	21	23.8%	0	-	unknown(0)	deleterious(0)	-	NULL
KANK4	163782	genome.wustl.edu	37	1	62737179	62737179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181712.4	-1	validated	p.K661N	1.000	153	0%	156	30.1%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KANK4	163782	genome.wustl.edu	37	1	62739866	62739866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181712.4	-1	validated	p.E304K	0.998	70	0%	92	29.3%	0	-	possibly_damaging(0.918)	tolerated(0.1)	deleterious(0.655)	NULL
DOCK7	85440	genome.wustl.edu	37	1	62941521	62941521	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033407.2	-1	validated	p.R1909*	1.000	337	0.3%	311	24.1%	11	0%	-	-	-	HMMPfam_Ded_cyto
ANGPTL3	27329	genome.wustl.edu	37	1	63066774	63066774	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014495.2	+1	reviewed	p.E210*	1.000	193	0%	151	27.2%	0	-	-	-	-	NULL
ANGPTL3	27329	genome.wustl.edu	37	1	63069884	63069884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014495.2	+1	reviewed	p.F392L	0.203	224	0%	152	28.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
ALG6	29929	genome.wustl.edu	37	1	63894444	63894444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013339.3	+1	reviewed	p.T367A	0.936	202	0%	176	21%	15	13.3%	benign(0.013)	tolerated(0.22)	neutral(0.043)	HMMPfam_Alg6_Alg8
EFCAB7	84455	genome.wustl.edu	37	1	64038176	64038176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032437.2	+1	validated	p.L627F	0.861	70	0%	50	32%	1	100%	possibly_damaging(0.882)	deleterious(0.03)	deleterious(0.709)	NULL
AK4	205	genome.wustl.edu	37	1	65684575	65684575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005353.1	+1	reviewed	p.V135A	0.997	167	0%	129	27.1%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	"HMMPfam_ADK,HMMPfam_ADK_lid,superfamily_Microbial and mitochondrial ADK insert ""zinc finger"" domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"
AK4	205	genome.wustl.edu	37	1	65691804	65691804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005353.1	+1	reviewed	p.V206I	0.988	189	0%	161	28.6%	6	33.3%	benign(0.043)	tolerated(0.15)	neutral(0.243)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LEPR	3953	genome.wustl.edu	37	1	66062163	66062163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002303.4	+1	reviewed	p.E246K	1.000	154	0%	108	20.4%	2	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SGIP1	84251	genome.wustl.edu	37	1	67101642	67101642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032291.2	+1	validated	p.E39K	1.000	319	0%	257	26.8%	0	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
TCTEX1D1	200132	genome.wustl.edu	37	1	67242046	67242046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152665.2	+1	validated	p.E99A	1.000	114	0%	113	36.3%	0	-	benign(0.009)	deleterious(0.04)	neutral(0.349)	HMMPfam_Tctex-1
SLC35D1	23169	genome.wustl.edu	37	1	67470088	67470088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015139.2	-1	reviewed	p.E335K	1.000	202	0%	170	35.3%	2	50%	benign(0.002)	tolerated(0.73)	neutral(0.002)	NULL
C1orf141	400757	genome.wustl.edu	37	1	67561052	67561052	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013674.1	-1	predicted	p.R157	0.004	54	0%	62	30.6%	0	-	-	-	-	NULL
C1orf141	400757	genome.wustl.edu	37	1	67581139	67581139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013674.1	-1	predicted	p.S81Y	0.002	205	0%	150	27.3%	0	-	probably_damaging(0.991)	tolerated(0.21)	deleterious(0.488)	NULL
IL12RB2	3595	genome.wustl.edu	37	1	67845728	67845728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001559.2	+1	reviewed	p.T593A	0.276	284	0%	228	32%	0	-	possibly_damaging(0.688)	tolerated(0.61)	neutral(0.250)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LOC100133029	100133029	genome.wustl.edu	37	1	68509804	68509804	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078220.1	+1	model	NULL	1.000	77	0%	68	25%	0	-	-	-	-	-
DIRAS3	9077	genome.wustl.edu	37	1	68512579	68512579	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004675.2	-1	reviewed	p.I134	0.997	154	0%	157	35.7%	2	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RPE65	6121	genome.wustl.edu	37	1	68904979	68904979	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000329.2	-1	reviewed	p.V251	0.993	235	0%	169	29.6%	0	-	-	-	-	HMMPfam_RPE65
DEPDC1	55635	genome.wustl.edu	37	1	68955277	68955277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114120.1	-1	validated	p.S110L	1.000	108	0%	99	25.3%	3	33.3%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_SSF46785
LRRC7	57554	genome.wustl.edu	37	1	70226020	70226020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020794.2	+1	validated	p.E45K	1.000	164	0%	133	32.3%	0	-	possibly_damaging(0.858)	tolerated(0.16)	neutral(0.391)	superfamily_L domain-like
LRRC7	57554	genome.wustl.edu	37	1	70493987	70493987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020794.2	+1	validated	p.T605M	1.000	124	0%	123	38.2%	0	-	probably_damaging(0.995)	tolerated(0.15)	deleterious(0.699)	NULL
LRRC40	55631	genome.wustl.edu	37	1	70654896	70654896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017768.4	-1	validated	p.S71L	0.946	275	0%	242	12.4%	11	27.2%	possibly_damaging(0.905)	deleterious(0.05)	deleterious(0.705)	superfamily_SSF52058
SRSF11	9295	genome.wustl.edu	37	1	70703154	70703154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004768.2	+1	reviewed	p.D213N	1.000	100	0%	110	34.5%	29	34.4%	unknown(0)	tolerated(0.36)	-	NULL
PTGER3	5733	genome.wustl.edu	37	1	71512841	71512841	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198718.1	-1	reviewed	p.F140	0.670	9	0.000	11	0.455	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PTGER3	5733	genome.wustl.edu	37	1	71513072	71513072	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198718.1	-1	reviewed	p.F63	1.000	11	0%	11	36.4%	0	-	-	-	-	superfamily_SSF81321
FPGT	8790	genome.wustl.edu	37	1	74670700	74670700	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003838.2	+1	reviewed	p.V323	1.000	126	0%	138	30.4%	4	75%	-	-	-	HMMPfam_Fucokinase
TNNI3K	51086	genome.wustl.edu	37	1	74835139	74835139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001112808.1	+1	validated	p.L614I	1.000	168	0%	131	36.6%	1	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
C1orf173	127254	genome.wustl.edu	37	1	75037897	75037897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002912.4	-1	validated	p.S1166L	0.036	464	0.2%	369	32%	0	-	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75038106	75038106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002912.4	-1	validated	p.Q1096H	0.000	609	0%	472	32.4%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75038707	75038707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002912.4	-1	validated	p.E896G	0.000	700	0%	560	29.6%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
LHX8	431707	genome.wustl.edu	37	1	75606762	75606762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001933.1	+1	validated	p.K120N	0.990	123	0%	77	26%	0	-	probably_damaging(0.974)	tolerated(0.36)	neutral(0.436)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MSH4	4438	genome.wustl.edu	37	1	76343887	76343887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002440.2	+1	validated	p.Y475C	1.000	71	0%	48	29.2%	0	-	possibly_damaging(0.46)	deleterious(0.03)	deleterious(0.515)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII
MSH4	4438	genome.wustl.edu	37	1	76363709	76363709	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002440.2	+1	validated	p.E825*	1.000	238	0%	147	23.1%	0	-	-	-	-	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
USP33	23032	genome.wustl.edu	37	1	78189051	78189051	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015017.3	-1	validated	p.I483L	1.000	95	0%	72	12.5%	28	28.5%	benign(0.169)	tolerated(0.99)	neutral(0.015)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP33	23032	genome.wustl.edu	37	1	78207369	78207369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015017.3	-1	validated	p.R36Q	0.997	87	0%	68	23.5%	3	0%	possibly_damaging(0.516)	tolerated(0.05)	deleterious(0.519)	NULL
FAM73A	374986	genome.wustl.edu	37	1	78324721	78324721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198549.2	+1	predicted	p.K365N	1.000	129	0%	170	22.4%	0	-	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	HMMPfam_DUF2217
FUBP1	8880	genome.wustl.edu	37	1	78426167	78426167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003902.3	-1	reviewed	p.P453H	1.000	40	0%	55	27.3%	129	41.8%	probably_damaging(0.999)	tolerated(0.54)	deleterious(0.498)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
FUBP1	8880	genome.wustl.edu	37	1	78433875	78433875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003902.3	-1	reviewed	p.A75G	1.000	140	0%	110	29.1%	22	72.7%	possibly_damaging(0.556)	tolerated(0.26)	neutral(0.224)	NULL
DNAJB4	11080	genome.wustl.edu	37	1	78481792	78481792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007034.3	+1	provisional	p.R292I	1.000	110	0%	105	31.4%	9	55.5%	benign(0.222)	tolerated(0.29)	neutral(0.051)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
GIPC2	54810	genome.wustl.edu	37	1	78546431	78546431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017655.4	+1	validated	p.D105Y	1.000	234	0%	195	29.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PDZ
GIPC2	54810	genome.wustl.edu	37	1	78585118	78585118	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017655.4	+1	validated	p.K217Q	0.255	103	0%	82	30.5%	0	-	probably_damaging(0.996)	tolerated(0.45)	deleterious(0.474)	NULL
PTGFR	5737	genome.wustl.edu	37	1	78959101	78959101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000959.3	+1	reviewed	p.I225V	1.000	108	0%	110	28.2%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
PTGFR	5737	genome.wustl.edu	37	1	79002235	79002235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000959.3	+1	reviewed	p.L315I	1.000	224	0%	184	29.9%	0	-	possibly_damaging(0.849)	tolerated(0.45)	neutral(0.338)	superfamily_SSF81321
IFI44	10561	genome.wustl.edu	37	1	79116329	79116329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006417.4	+1	validated	p.R150Q	0.887	166	0.6%	172	29.1%	4	25%	probably_damaging(0.957)	tolerated(0.12)	deleterious(0.661)	superfamily_SSF52540
IFI44	10561	genome.wustl.edu	37	1	79129490	79129490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006417.4	+1	validated	p.K443N	0.000	120	0%	92	32.6%	3	0%	possibly_damaging(0.774)	deleterious(0)	deleterious(0.733)	NULL
ELTD1	64123	genome.wustl.edu	37	1	79392576	79392576	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022159.3	-1	validated	p.R360*	0.028	123	0%	125	31.2%	1	0%	-	-	-	NULL
ELTD1	64123	genome.wustl.edu	37	1	79403949	79403949	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022159.3	-1	validated	p.E138*	0.611	103	0%	65	36.9%	0	-	-	-	-	NULL
ELTD1	64123	genome.wustl.edu	37	1	79404928	79404928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022159.3	-1	validated	p.N114S	0.941	60	0%	40	35%	5	0%	benign(0.009)	tolerated(0.25)	neutral(0.037)	NULL
TTLL7	79739	genome.wustl.edu	37	1	84408255	84408255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024686.4	-1	validated	p.R205Q	1.000	92	0%	52	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
RPF1	80135	genome.wustl.edu	37	1	84946689	84946689	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025065.6	+1	validated	p.G93	0.948	216	0%	215	31.6%	45	46.6%	-	-	-	NULL
MCOLN2	255231	genome.wustl.edu	37	1	85417962	85417962	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153259.2	-1	reviewed	p.S237	0.417	143	0%	135	11.1%	0	-	-	-	-	NULL
MCOLN3	55283	genome.wustl.edu	37	1	85491841	85491841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000370587	-1	known	p.A320V	0.000	201	0%	170	34.1%	0	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
MCOLN3	55283	genome.wustl.edu	37	1	85506698	85506698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018298.9	-1	validated	p.N131H	0.512	363	0%	316	29.4%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
WDR63	126820	genome.wustl.edu	37	1	85548073	85548073	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145172.3	+1	validated	p.E126*	1.000	90	0%	76	32.9%	0	-	-	-	-	superfamily_WD40 repeat-like
WDR63	126820	genome.wustl.edu	37	1	85550265	85550265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145172.3	+1	validated	p.E143*	0.997	404	0%	338	25.4%	0	-	-	-	-	superfamily_WD40 repeat-like
SYDE2	84144	genome.wustl.edu	37	1	85624566	85624566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032184.1	-1	validated	p.Y1151C	0.995	131	0%	113	28.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYDE2	84144	genome.wustl.edu	37	1	85630256	85630256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032184.1	-1	validated	p.F1013S	1.000	29	0%	23	26.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SYDE2	84144	genome.wustl.edu	37	1	85643939	85643939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032184.1	-1	validated	p.R854Q	1.000	32	0%	26	23.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
BCL10	8915	genome.wustl.edu	37	1	85736389	85736389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003921.4	-1	reviewed	p.I86M	0.992	187	0%	205	32.7%	16	37.5%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_CARD,superfamily_DEATH domain
BCL10	8915	genome.wustl.edu	37	1	85736574	85736574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003921.4	-1	reviewed	p.R25C	1.000	171	0%	193	25.4%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CARD,superfamily_DEATH domain
COL24A1	255631	genome.wustl.edu	37	1	86249997	86249997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152890.5	-1	validated	p.R1371Q	0.000	196	0%	150	36%	1	0%	benign(0.009)	tolerated(0.47)	neutral(0.011)	HMMPfam_Collagen
COL24A1	255631	genome.wustl.edu	37	1	86590830	86590830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152890.5	-1	validated	p.L397I	0.016	166	0%	204	30.4%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
CLCA1	1179	genome.wustl.edu	37	1	86939500	86939500	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000495894	+1	known	NULL	0.002	305	0%	249	21.3%	0	-	-	-	-	-
CLCA1	1179	genome.wustl.edu	37	1	86951090	86951090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001285.3	+1	reviewed	p.C267Y	1.000	440	0%	467	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLCA4	22802	genome.wustl.edu	37	1	87041050	87041050	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012128.3	+1	reviewed	p.A573	0.000	210	0%	178	29.2%	0	-	-	-	-	HMMPfam_DUF1973
RBMXL1	494115	genome.wustl.edu	37	1	89448540	89448540	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000321792	-1	known	p.R324*	1.000	301	0%	271	29.2%	6	0%	-	-	-	NULL
GBP3	2635	genome.wustl.edu	37	1	89486336	89486336	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018284.2	-1	reviewed	p.A23	0.000	380	0%	385	28.3%	9	33.3%	-	-	-	superfamily_SSF52540
GBP7	388646	genome.wustl.edu	37	1	89607325	89607325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207398.2	-1	validated	p.E458K	0.001	222	0%	209	14.4%	0	-	benign(0.003)	tolerated(0.08)	neutral(0.300)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
GBP4	115361	genome.wustl.edu	37	1	89651095	89651095	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052941.4	-1	validated	p.E589*	0.047	255	0%	273	27.5%	5	0%	-	-	-	HMMPfam_GBP_C,superfamily_GBP
GBP4	115361	genome.wustl.edu	37	1	89658671	89658671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052941.4	-1	validated	p.R196W	0.274	179	0%	234	27.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GBP,superfamily_SSF52540
GBP4	115361	genome.wustl.edu	37	1	89659033	89659033	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052941.4	-1	validated	p.V142	1.000	172	0%	158	30.4%	7	0%	-	-	-	HMMPfam_GBP,superfamily_SSF52540
LRRC8C	84230	genome.wustl.edu	37	1	90179583	90179583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032270.4	+1	validated	p.A485V	1.000	201	0%	174	37.9%	7	42.8%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_L domain-like
LRRC8C	84230	genome.wustl.edu	37	1	90180019	90180019	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032270.4	+1	validated	p.I630	0.047	151	0%	101	30.7%	4	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LRRC8D	55144	genome.wustl.edu	37	1	90399926	90399926	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134479.1	+1	validated	p.R433	0.750	123	0%	113	32.7%	23	30.4%	-	-	-	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90400375	90400375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134479.1	+1	validated	p.S583Y	1.000	149	0%	104	19.2%	61	40.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF52058
BARHL2	343472	genome.wustl.edu	37	1	91182708	91182708	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020063.1	-1	validated	p.T15	0.999	103	0%	55	27.3%	0	-	-	-	-	NULL
ZNF644	84146	genome.wustl.edu	37	1	91404729	91404729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201269.1	-1	validated	p.E728*	1.000	132	0%	163	35%	2	50%	-	-	-	NULL
ZNF644	84146	genome.wustl.edu	37	1	91404952	91404952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201269.1	-1	validated	p.K653N	1.000	198	0%	239	29.7%	6	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF644	84146	genome.wustl.edu	37	1	91405066	91405066	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201269.1	-1	validated	p.D615	1.000	196	0%	207	29%	1	0%	-	-	-	NULL
ZNF644	84146	genome.wustl.edu	37	1	91405533	91405533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201269.1	-1	validated	p.R460C	1.000	221	0%	241	32.4%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF644	84146	genome.wustl.edu	37	1	91406406	91406406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201269.1	-1	validated	p.A169T	0.957	214	0%	238	24.8%	1	0%	benign(0.129)	deleterious(0)	neutral(0.456)	NULL
HFM1	164045	genome.wustl.edu	37	1	91781509	91781509	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430465	-1	known	p.R213Q	0.000	79	0%	95	26.3%	0	-	-	-	-	NULL
CDC7	8317	genome.wustl.edu	37	1	91985764	91985764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134419.1	+1	reviewed	p.D420Y	1.000	209	0%	201	28.9%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TGFBR3	7049	genome.wustl.edu	37	1	92182141	92182141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003243.3	-1	validated	p.R564Q	0.037	531	0%	400	29.5%	0	-	possibly_damaging(0.893)	tolerated(0.52)	neutral(0.360)	HMMPfam_Zona_pellucida,HMMSmart_ZP
TGFBR3	7049	genome.wustl.edu	37	1	92193247	92193247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003243.3	-1	validated	p.S285Y	1.000	263	0%	290	36.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
BRDT	676	genome.wustl.edu	37	1	92446270	92446270	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001726.3	+1	validated	p.E453A	0.960	190	0%	142	33.1%	0	-	benign(0.033)	tolerated(0.43)	neutral(0.015)	NULL
BRDT	676	genome.wustl.edu	37	1	92446528	92446528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001726.3	+1	validated	p.K515E	1.000	191	0%	112	22.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BRDT	676	genome.wustl.edu	37	1	92467670	92467670	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001726.3	+1	validated	p.T784	0.000	183	0%	131	32.1%	0	-	-	-	-	NULL
EPHX4	253152	genome.wustl.edu	37	1	92528711	92528711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173567.4	+1	validated	p.K319N	1.000	188	0%	145	31.7%	0	-	benign(0.025)	tolerated(0.46)	neutral(0.013)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
BTBD8	284697	genome.wustl.edu	37	1	92606759	92606759	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183242.3	+1	validated	p.F307	1.000	128	0%	88	33%	0	-	-	-	-	NULL
EVI5	7813	genome.wustl.edu	37	1	93101866	93101866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005665.4	-1	validated	p.D458Y	1.000	222	0.5%	158	31%	1	0%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
RPL5	6125	genome.wustl.edu	37	1	93306145	93306145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000969.3	+1	reviewed	p.R248Q	1.000	432	0%	314	28.7%	1320	42.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Translational machinery components
MTF2	22823	genome.wustl.edu	37	1	93584893	93584893	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007358.3	+1	validated	p.F244L	1.000	50	0%	53	32.1%	12	75%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
CCDC18	343099	genome.wustl.edu	37	1	93649649	93649649	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206886.2	+1	validated	p.N201	0.278	175	0%	140	32.9%	1	0%	-	-	-	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94342538	94342538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014597.3	-1	provisional	p.S318Y	0.063	150	0%	154	31.2%	25	40%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ABCA4	24	genome.wustl.edu	37	1	94495985	94495985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000350.2	-1	reviewed	p.P1451S	0.330	94	0%	94	34%	1	100%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
DPYD	1806	genome.wustl.edu	37	1	97564181	97564181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000110.3	-1	reviewed	p.P877Q	1.000	174	0%	155	11%	1	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	superfamily_SSF54862
DPYD	1806	genome.wustl.edu	37	1	98186483	98186483	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000306031	-1	known	e6-1	0.002	53	0%	44	31.8%	0	-	-	-	-	-
DPYD	1806	genome.wustl.edu	37	1	98348842	98348842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000110.3	-1	reviewed	p.R43I	1.000	80	0%	57	26.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Helical_ferredxn
LPPR5	163404	genome.wustl.edu	37	1	99387499	99387499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037317.1	-1	reviewed	p.R246Q	1.000	221	0%	175	24.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
AGL	178	genome.wustl.edu	37	1	100342057	100342057	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000028.2	+1	reviewed	p.E443*	0.999	81	0%	44	25%	1	0%	-	-	-	superfamily_(Trans)glycosidases
AGL	178	genome.wustl.edu	37	1	100361928	100361928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000028.2	+1	reviewed	p.R1116C	0.997	167	0.6%	123	31.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Six-hairpin glycosidases,HMMPfam_GDE_C
SASS6	163786	genome.wustl.edu	37	1	100591457	100591457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194292.1	-1	validated	p.S36Y	0.998	167	0%	130	26.9%	3	0%	probably_damaging(0.972)	tolerated(0.06)	deleterious(0.736)	NULL
CCDC76	54482	genome.wustl.edu	37	1	100605798	100605798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019083.2	+1	validated	p.A129T	1.000	106	0%	66	37.9%	3	66.6%	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	NULL
VCAM1	7412	genome.wustl.edu	37	1	101190371	101190371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001078.2	+1	reviewed	p.D285Y	1.000	149	0%	171	35.7%	13	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
VCAM1	7412	genome.wustl.edu	37	1	101198074	101198074	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001078.2	+1	reviewed	p.P542	0.024	132	0%	128	25.8%	11	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
VCAM1	7412	genome.wustl.edu	37	1	101200164	101200164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001078.2	+1	reviewed	p.I633M	1.000	199	0%	153	22.2%	17	0%	possibly_damaging(0.756)	deleterious(0.01)	deleterious(0.685)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
EXTL2	2135	genome.wustl.edu	37	1	101343416	101343416	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033025.1	-1	validated	p.R17*	0.710	166	0%	116	27.6%	4	25%	-	-	-	NULL
S1PR1	1901	genome.wustl.edu	37	1	101705150	101705150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001400.4	+1	reviewed	p.L204I	1.000	175	0%	193	36.3%	19	15.7%	possibly_damaging(0.661)	deleterious(0.01)	deleterious(0.639)	HMMPfam_7tm_1,superfamily_SSF81321
COL11A1	1301	genome.wustl.edu	37	1	103347308	103347308	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080629.2	-1	reviewed	p.S1674*	1.000	91	0%	95	35.8%	16	0%	-	-	-	HMMPfam_COLFI,HMMSmart_COLFI
AMY2B	280	genome.wustl.edu	37	1	104116430	104116430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020978.3	+1	reviewed	p.G205V	1.000	698	0%	442	31.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
PRMT6	55170	genome.wustl.edu	37	1	107599942	107599942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018137.2	+1	validated	p.E143A	0.989	44	0%	54	38.9%	10	0%	possibly_damaging(0.531)	deleterious(0.01)	deleterious(0.585)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
NTNG1	22854	genome.wustl.edu	37	1	107691410	107691410	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113226.1	+1	validated	p.L65	1.000	151	0%	116	34.5%	1	100%	-	-	-	HMMPfam_Laminin_N,HMMSmart_SM00136
NTNG1	22854	genome.wustl.edu	37	1	107961238	107961238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113228.1	+1	validated	p.S375Y	1.000	30	0%	23	26.1%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
VAV3	10451	genome.wustl.edu	37	1	108291648	108291648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006113.4	-1	reviewed	p.F482V	1.000	100	0%	70	27.1%	2	100%	benign(0.001)	tolerated(0.15)	neutral(0.241)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FNDC7	163479	genome.wustl.edu	37	1	109271421	109271421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144937.1	+1	provisional	p.P513S	1.000	124	0%	111	29.7%	0	-	probably_damaging(1)	tolerated(0.49)	deleterious(0.510)	HMMSmart_SM00060,superfamily_Fibronectin type III
AKNAD1	254268	genome.wustl.edu	37	1	109358873	109358873	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152763.3	-1	validated	p.E811*	0.992	250	0%	244	14.3%	0	-	-	-	-	NULL
AKNAD1	254268	genome.wustl.edu	37	1	109373196	109373196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152763.3	-1	validated	p.R608H	0.003	101	0%	76	34.2%	0	-	benign(0.165)	tolerated(0.06)	neutral(0.338)	NULL
GPSM2	29899	genome.wustl.edu	37	1	109441519	109441519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013296.4	+1	validated	p.E234*	1.000	151	0%	123	24.4%	1	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
GPSM2	29899	genome.wustl.edu	37	1	109472452	109472452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013296.4	+1	validated	p.L649F	1.000	308	0%	222	29.3%	10	10%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_GoLoco,HMMSmart_GoLoco
KIAA1324	57535	genome.wustl.edu	37	1	109707137	109707137	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020775.3	+1	validated	p.A97	0.379	201	0%	209	29.7%	1	0%	unknown(0)	-	-	superfamily_Growth factor receptor domain
SORT1	6272	genome.wustl.edu	37	1	109859531	109859531	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002959.4	-1	reviewed	p.R731*	0.525	332	0%	262	29%	34	0%	-	-	-	HMMSmart_SM00602
SYPL2	284612	genome.wustl.edu	37	1	110019591	110019591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040709.1	+1	validated	p.P150T	0.998	149	0%	159	23.9%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_MARVEL
ATXN7L2	127002	genome.wustl.edu	37	1	110031050	110031050	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153340.4	+1	validated	p.E249A	1.000	35	0%	30	43.3%	2	50%	possibly_damaging(0.891)	deleterious(0.01)	deleterious(0.756)	HMMPfam_SCA7
AMIGO1	57463	genome.wustl.edu	37	1	110051072	110051072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020703.2	-1	validated	p.D155N	0.821	76	0%	60	41.7%	1	0%	benign(0.01)	tolerated(0.47)	neutral(0.011)	superfamily_SSF52058
GPR61	83873	genome.wustl.edu	37	1	110086751	110086751	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031936.4	+1	validated	p.R369	1.000	68	0%	47	21.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
GNAT2	2780	genome.wustl.edu	37	1	110155384	110155384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005272.3	-1	reviewed	p.L37I	1.000	96	0%	108	13.9%	2	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
GSTM5	2949	genome.wustl.edu	37	1	110257850	110257850	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000851.3	+1	reviewed	p.I185	0.016	166	0%	206	20.9%	2	0%	-	-	-	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
EPS8L3	79574	genome.wustl.edu	37	1	110293371	110293371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139053.1	-1	reviewed	p.R562C	0.521	64	0%	75	32%	1	0%	possibly_damaging(0.893)	tolerated(0.08)	deleterious(0.652)	NULL
EPS8L3	79574	genome.wustl.edu	37	1	110300103	110300103	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139053.1	-1	reviewed	p.F324	0.000	38	0%	45	26.7%	2	0%	-	-	-	NULL
ALX3	257	genome.wustl.edu	37	1	110607456	110607456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006492.2	-1	reviewed	p.D116G	0.230	16	0%	11	36.4%	0	-	benign(0.4)	deleterious(0.04)	deleterious(0.477)	NULL
UBL4B	164153	genome.wustl.edu	37	1	110655237	110655237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203412.1	+1	validated	p.K27N	1.000	79	0%	116	36.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
SLC6A17	388662	genome.wustl.edu	37	1	110716596	110716596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010898.2	+1	validated	p.V149A	1.000	65	1.5%	56	33.9%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_SNF
SLC6A17	388662	genome.wustl.edu	37	1	110740893	110740893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010898.2	+1	validated	p.D671N	1.000	68	0%	57	28.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KCNA10	3744	genome.wustl.edu	37	1	111060307	111060307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005549.2	-1	reviewed	p.L368R	1.000	260	0.4%	265	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNA10	3744	genome.wustl.edu	37	1	111060647	111060647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005549.2	-1	reviewed	p.L255I	0.003	241	0%	271	29.9%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	superfamily_SSF81324
KCNA3	3738	genome.wustl.edu	37	1	111215867	111215867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002232.3	-1	reviewed	p.S522L	1.000	154	0%	81	29.6%	0	-	benign(0.023)	tolerated(0.06)	neutral(0.324)	NULL
LRIF1	55791	genome.wustl.edu	37	1	111495024	111495024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018372.3	-1	validated	p.S161Y	0.993	317	0%	262	32.1%	4	25%	possibly_damaging(0.509)	deleterious(0.04)	deleterious(0.519)	NULL
DENND2D	79961	genome.wustl.edu	37	1	111730975	111730975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024901.3	-1	provisional	p.E373K	0.985	156	0%	123	33.3%	2	0%	benign(0.002)	tolerated(0.79)	neutral(0.001)	HMMPfam_dDENN,HMMSmart_SM00801
CHI3L2	1117	genome.wustl.edu	37	1	111773879	111773879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004000.2	+1	validated	p.L98I	1.000	66	0%	72	33.3%	8	12.5%	possibly_damaging(0.924)	deleterious(0.04)	deleterious(0.722)	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
C1orf88	128344	genome.wustl.edu	37	1	111889580	111889580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181643.4	+1	validated	p.F23C	1.000	91	0%	55	18.2%	27	59.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OVGP1	5016	genome.wustl.edu	37	1	111964193	111964193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002557.3	-1	reviewed	p.K237N	0.936	179	0%	187	28.9%	1	0%	benign(0.062)	tolerated(0.2)	neutral(0.053)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
OVGP1	5016	genome.wustl.edu	37	1	111964246	111964246	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002557.3	-1	reviewed	p.E220*	1.000	198	0%	196	30.6%	1	0%	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
ADORA3	140	genome.wustl.edu	37	1	112042916	112042916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000677.3	-1	reviewed	p.R205W	0.993	361	0%	309	29.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KCND3	3752	genome.wustl.edu	37	1	112525100	112525100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004980.3	-1	reviewed	p.F83L	1.000	139	0%	99	26.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
SLC16A1	6566	genome.wustl.edu	37	1	113456590	113456590	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003051.3	-1	reviewed	p.E476*	0.478	266	0%	275	33.5%	15	13.3%	-	-	-	NULL
SLC16A1	6566	genome.wustl.edu	37	1	113460045	113460045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003051.3	-1	reviewed	p.R328Q	0.988	134	0%	158	39.2%	15	26.6%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
LRIG2	9860	genome.wustl.edu	37	1	113658960	113658960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014813.1	+1	provisional	p.T861M	1.000	81	0%	45	24.4%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MAGI3	260425	genome.wustl.edu	37	1	114225877	114225877	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142782.1	+1	validated	p.S1229	0.011	225	0%	215	15.8%	2	0%	-	-	-	NULL
PTPN22	26191	genome.wustl.edu	37	1	114375722	114375722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012411.3	-1	reviewed	p.F688L	0.000	71	0%	105	25.7%	0	-	unknown(0)	-	-	NULL
PTPN22	26191	genome.wustl.edu	37	1	114380396	114380396	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015967.4	-1	reviewed	p.P542	0.756	264	0%	322	26.4%	1	0%	-	-	-	NULL
PTPN22	26191	genome.wustl.edu	37	1	114414192	114414192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015967.4	-1	reviewed	p.K18N	0.295	218	0%	300	36%	0	-	benign(0.182)	deleterious(0.01)	neutral(0.422)	superfamily_SSF52799
DCLRE1B	64858	genome.wustl.edu	37	1	114453897	114453897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022836.3	+1	validated	p.R228H	1.000	99	0%	150	26%	14	28.5%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_DRMBL
HIPK1	204851	genome.wustl.edu	37	1	114508829	114508829	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000361587	+1	known	p.L53F	1.000	94	0%	86	33.7%	12	33.3%	-	-	-	NULL
TRIM33	51592	genome.wustl.edu	37	1	114948090	114948090	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015906.3	-1	reviewed	p.K904Q	1.000	550	0%	464	30.2%	7	71.4%	possibly_damaging(0.918)	tolerated(0.12)	deleterious(0.629)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
TRIM33	51592	genome.wustl.edu	37	1	114976295	114976295	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000448034	-1	known	p.R65Q	1.000	120	0%	103	29.1%	6	50%	-	-	-	HMMSmart_SM00502
AMPD1	270	genome.wustl.edu	37	1	115216292	115216292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000036.2	-1	reviewed	p.N685D	1.000	74	0%	72	20.8%	0	-	possibly_damaging(0.899)	deleterious(0)	deleterious(0.800)	HMMPfam_A_deaminase,superfamily_SSF51556
AMPD1	270	genome.wustl.edu	37	1	115217471	115217471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000036.2	-1	reviewed	p.L568M	1.000	65	0%	76	40.8%	0	-	benign(0.027)	tolerated(0.15)	neutral(0.242)	HMMPfam_A_deaminase,superfamily_SSF51556
CSDE1	7812	genome.wustl.edu	37	1	115261263	115261263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130523.1	-1	validated	p.R789C	1.000	88	0%	77	35.1%	433	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSDE1	7812	genome.wustl.edu	37	1	115263259	115263259	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130523.1	-1	validated	p.S666	1.000	180	0%	133	36.1%	399	40.6%	-	-	-	NULL
CSDE1	7812	genome.wustl.edu	37	1	115272974	115272974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130523.1	-1	validated	p.H436N	1.000	180	0%	140	34.3%	278	42%	possibly_damaging(0.952)	tolerated(0.17)	neutral(0.455)	NULL
CSDE1	7812	genome.wustl.edu	37	1	115277136	115277136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130523.1	-1	validated	p.A185V	1.000	164	0%	165	29.1%	139	47.4%	possibly_damaging(0.918)	tolerated(0.24)	neutral(0.406)	NULL
SIKE1	80143	genome.wustl.edu	37	1	115321846	115321846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102396.1	-1	validated	p.R113W	1.000	170	0%	143	24.5%	33	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF837
SYCP1	6847	genome.wustl.edu	37	1	115453072	115453072	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003176.2	+1	validated	p.E459*	1.000	231	0%	157	36.3%	0	-	-	-	-	HMMPfam_SCP-1
TSHB	7252	genome.wustl.edu	37	1	115576028	115576028	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000549.3	+1	reviewed	p.C15	0.997	275	0%	235	35.7%	0	-	-	-	-	NULL
TSPAN2	10100	genome.wustl.edu	37	1	115596074	115596074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005725.4	-1	reviewed	p.D176N	0.998	213	0%	164	29.3%	3	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
TSPAN2	10100	genome.wustl.edu	37	1	115604812	115604812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005725.4	-1	reviewed	p.V72M	1.000	13	0%	10	60%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Tetraspannin,PatternScan_TM4_1
NGF	4803	genome.wustl.edu	37	1	115829175	115829175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002506.2	-1	reviewed	p.R81Q	0.559	71	0%	50	36%	0	-	benign(0.404)	deleterious(0.04)	deleterious(0.479)	NULL
VANGL1	81839	genome.wustl.edu	37	1	116226668	116226668	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138959.2	+1	reviewed	p.H350	0.060	99	0%	79	30.4%	18	33.3%	-	-	-	HMMPfam_Strabismus
CASQ2	845	genome.wustl.edu	37	1	116243955	116243955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001232.3	-1	reviewed	p.K369N	0.998	116	0%	99	26.3%	0	-	probably_damaging(0.979)	tolerated(0.18)	deleterious(0.478)	HMMPfam_Calsequestrin,PatternScan_CALSEQUESTRIN_2
CASQ2	845	genome.wustl.edu	37	1	116275589	116275589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001232.3	-1	reviewed	p.K180T	1.000	157	0%	138	22.5%	2	100%	possibly_damaging(0.561)	deleterious(0.05)	deleterious(0.537)	HMMPfam_Calsequestrin,superfamily_Thioredoxin-like
IGSF3	3321	genome.wustl.edu	37	1	117120139	117120139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001542.2	-1	validated	p.Y1147C	1.000	133	0%	116	36.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IGSF3	3321	genome.wustl.edu	37	1	117122389	117122389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001542.2	-1	validated	p.A1007T	1.000	43	0%	67	16.4%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
CD2	914	genome.wustl.edu	37	1	117303043	117303043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001767.3	+1	validated	p.K134N	0.000	126	0%	135	33.3%	22	0%	benign(0.001)	tolerated(0.49)	neutral(0.011)	superfamily_Immunoglobulin
CD101	9398	genome.wustl.edu	37	1	117554205	117554205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004258.3	+1	validated	p.S153Y	0.918	156	0%	83	41%	0	-	possibly_damaging(0.46)	deleterious(0.03)	deleterious(0.515)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
WDR3	10885	genome.wustl.edu	37	1	118476052	118476052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006784.2	+1	reviewed	p.R37H	1.000	203	0%	162	31.5%	8	50%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_WD40 repeat-like
WDR3	10885	genome.wustl.edu	37	1	118477158	118477158	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006784.2	+1	reviewed	p.L78	1.000	186	0%	147	36.1%	11	54.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SPAG17	200162	genome.wustl.edu	37	1	118640370	118640370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206996.2	-1	validated	p.L312F	1.000	138	0%	97	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HAO2	51179	genome.wustl.edu	37	1	119923829	119923829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005783.1	+1	reviewed	p.A41S	1.000	180	0%	157	31.2%	0	-	benign(0.338)	tolerated(0.06)	neutral(0.429)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
HAO2	51179	genome.wustl.edu	37	1	119925542	119925542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005783.1	+1	reviewed	p.R46C	1.000	103	0%	93	33.3%	0	-	probably_damaging(0.98)	deleterious(0.05)	deleterious(0.769)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
HSD3B2	3284	genome.wustl.edu	37	1	119958163	119958163	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000198.3	+1	reviewed	p.E41*	0.025	225	0%	205	34.1%	0	-	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-binding Rossmann-fold domains
HSD3B1	3283	genome.wustl.edu	37	1	120056674	120056674	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000862.2	+1	validated	p.N176	1.000	293	0%	288	14.6%	0	-	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
ZNF697	90874	genome.wustl.edu	37	1	120168510	120168510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080470.1	-1	provisional	p.D72N	0.000	74	0%	42	31%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
NBPF7	343505	genome.wustl.edu	37	1	120378766	120378766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001047980.1	-1	predicted	p.S327Y	0.000	155	0%	157	21.7%	0	-	-	-	-	HMMPfam_DUF1220
NBPF7	343505	genome.wustl.edu	37	1	120381872	120381872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001047980.1	-1	predicted	p.S258L	0.000	519	0%	449	27.8%	0	-	-	-	-	HMMPfam_DUF1220
NOTCH2	4853	genome.wustl.edu	37	1	120464410	120464410	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024408.2	-1	reviewed	p.E1746*	1.000	162	0%	108	34.3%	4	0%	-	-	-	NULL
NOTCH2	4853	genome.wustl.edu	37	1	120464896	120464896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024408.2	-1	reviewed	p.R1726C	1.000	135	0%	126	33.3%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100132733	100132733	genome.wustl.edu	37	1	143211639	143211639	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001715342.2	-1	model	p.E230*	0.036	47	0%	26	34.6%	0	-	-	-	-	NULL
FAM72D	728833	genome.wustl.edu	37	1	143910092	143910092	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207418.2	-1	predicted	p.I72	0.968	629	0%	668	9.1%	5	0%	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144874007	144874007	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014644.4	-1	validated	p.H1650	0.863	586	0%	473	15.2%	0	-	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144877269	144877269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014644.4	-1	validated	p.K1473T	1.000	235	0%	172	22.1%	0	-	unknown(0)	deleterious(0)	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144881520	144881520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014644.4	-1	validated	p.R1226C	0.982	292	0%	289	17%	0	-	unknown(0)	deleterious(0)	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144931212	144931212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002811.1	-1	validated	p.R166K	1.000	215	0%	154	14.9%	2	0%	possibly_damaging(0.945)	tolerated(0.55)	neutral(0.397)	NULL
ITGA10	8515	genome.wustl.edu	37	1	145537526	145537526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003637.3	+1	reviewed	p.F846V	1.000	621	0%	568	28.9%	0	-	possibly_damaging(0.83)	tolerated(0.15)	deleterious(0.556)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ANKRD35	148741	genome.wustl.edu	37	1	145549338	145549338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144698.3	+1	validated	p.S8P	1.000	38	0%	54	25.9%	0	-	-	-	-	NULL
PDZK1	5174	genome.wustl.edu	37	1	145747117	145747117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002614.3	+1	provisional	p.R25Q	1.000	204	0%	222	26.1%	0	-	possibly_damaging(0.943)	tolerated(0.05)	deleterious(0.733)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PDZK1	5174	genome.wustl.edu	37	1	145748568	145748568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002614.3	+1	provisional	p.F147L	1.000	92	0%	94	30.9%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
FMO5	2330	genome.wustl.edu	37	1	146673055	146673055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001461.2	-1	reviewed	p.D288Y	1.000	270	0.4%	234	30.3%	0	-	benign(0.015)	deleterious(0.03)	neutral(0.365)	HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain
LOC100289179	100289179	genome.wustl.edu	37	1	146747861	146747861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342114.1	-1	model	p.D108Y	1.000	124	0%	169	30.8%	17	17.6%	-	-	-	NULL
FCGR1A	2209	genome.wustl.edu	37	1	149761831	149761831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000566.3	+1	reviewed	p.E261K	0.788	43	0%	57	38.6%	18	0%	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
BOLA1	51027	genome.wustl.edu	37	1	149871663	149871663	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016074.3	+1	validated	p.V17	0.953	18	0%	21	42.9%	3	0%	-	-	-	superfamily_BolA-like
BOLA1	51027	genome.wustl.edu	37	1	149871843	149871843	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016074.3	+1	validated	p.F77	0.967	29	0%	22	36.4%	5	0%	-	-	-	HMMPfam_BolA,superfamily_BolA-like
MTMR11	10903	genome.wustl.edu	37	1	149906098	149906098	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181873.3	-1	validated	p.F151	1.000	253	0%	239	31%	5	0%	-	-	-	HMMPfam_Myotub-related,superfamily_SSF52799
MTMR11	10903	genome.wustl.edu	37	1	149907229	149907229	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181873.3	-1	validated	p.Y24	1.000	288	0%	231	34.2%	2	50%	-	-	-	superfamily_SSF50729
MRPS21	54460	genome.wustl.edu	37	1	150280627	150280627	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018997.2	+1	reviewed	p.R77*	1.000	74	0%	78	35.9%	340	39.1%	-	-	-	NULL
PRPF3	9129	genome.wustl.edu	37	1	150307679	150307679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004698.2	+1	reviewed	p.K334N	1.000	117	0%	105	12.4%	17	11.7%	possibly_damaging(0.783)	deleterious(0)	deleterious(0.738)	HMMPfam_PRP3
RPRD2	23248	genome.wustl.edu	37	1	150444919	150444919	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015203.3	+1	validated	p.A1165	0.998	144	0%	98	30.6%	31	51.6%	-	-	-	NULL
SEMA6C	10500	genome.wustl.edu	37	1	151110875	151110875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030913.4	-1	reviewed	p.S155L	0.981	43	0%	39	33.3%	1	0%	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
RFX5	5993	genome.wustl.edu	37	1	151315110	151315110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000449.3	-1	reviewed	p.R468H	1.000	431	0%	490	23.9%	12	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SELENBP1	8991	genome.wustl.edu	37	1	151339310	151339310	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000424475	-1	known	p.H145R	0.001	285	0%	279	31.5%	14	35.7%	-	-	-	HMMPfam_SBP56,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
POGZ	23126	genome.wustl.edu	37	1	151377514	151377514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015100.2	-1	reviewed	p.D1333N	1.000	317	0%	359	30.9%	13	46.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CGN	57530	genome.wustl.edu	37	1	151496745	151496745	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020770.2	+1	validated	p.R438*	0.034	62	0%	78	41%	8	0%	-	-	-	NULL
SNX27	81609	genome.wustl.edu	37	1	151655871	151655871	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030918.5	+1	reviewed	p.E397*	1.000	107	0%	100	30%	4	0%	-	-	-	NULL
THEM5	284486	genome.wustl.edu	37	1	151823623	151823623	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182578.3	-1	validated	p.G124*	0.997	54	0%	46	17.4%	2	0%	-	-	-	superfamily_SSF54637
HRNR	388697	genome.wustl.edu	37	1	152195694	152195694	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009931.1	-1	validated	p.I12	0.000	171	0%	116	29.3%	0	-	-	-	-	HMMPfam_S_100,superfamily_SSF47473
FLG	2312	genome.wustl.edu	37	1	152279606	152279606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002016.1	-1	reviewed	p.S2586P	0.017	422	0%	304	24%	0	-	unknown(0)	deleterious(0)	-	NULL
FLG	2312	genome.wustl.edu	37	1	152285773	152285773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002016.1	-1	reviewed	p.S530F	0.004	344	0.3%	284	30.6%	0	-	benign(0.196)	deleterious(0.04)	neutral(0.367)	NULL
FLG2	388698	genome.wustl.edu	37	1	152326872	152326872	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014342.2	-1	provisional	p.Q1130	0.000	508	0%	424	29.5%	0	-	-	-	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152327190	152327190	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014342.2	-1	provisional	p.G1024	0.002	700	0.3%	537	28.9%	0	-	-	-	-	HMMPfam_SVS_QK
FLG2	388698	genome.wustl.edu	37	1	152327772	152327772	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014342.2	-1	provisional	p.S830	0.000	715	0.1%	595	31.4%	0	-	-	-	-	NULL
CRNN	49860	genome.wustl.edu	37	1	152382182	152382182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016190.2	-1	reviewed	p.N459S	0.008	224	0%	205	32.2%	0	-	benign(0)	tolerated(1)	-	NULL
LCE3E	353145	genome.wustl.edu	37	1	152538491	152538491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178435.2	-1	validated	p.R65H	0.988	162	0%	141	18.4%	0	-	unknown(0)	-	-	NULL
LCE4A	199834	genome.wustl.edu	37	1	152681622	152681622	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178356.2	+1	validated	p.K24T	0.008	235	0%	251	27.1%	0	-	unknown(0)	-	-	NULL
IVL	3713	genome.wustl.edu	37	1	152882277	152882277	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005547.2	+1	reviewed	p.S2A	1.000	133	0.8%	121	24%	1	100%	unknown(0)	deleterious(0)	-	HMMPfam_Involucrin_N,PatternScan_INVOLUCRIN
IVL	3713	genome.wustl.edu	37	1	152882632	152882632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005547.2	+1	reviewed	p.N120S	0.000	215	0%	208	29.8%	0	-	unknown(0)	tolerated(0.45)	-	NULL
SPRR2E	6704	genome.wustl.edu	37	1	153066117	153066117	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024209.2	-1	validated	p.P37	0.000	464	0%	382	27.2%	0	-	-	-	-	NULL
PGLYRP4	57115	genome.wustl.edu	37	1	153315607	153315607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020393.2	-1	validated	p.N144S	0.983	297	0%	317	27.8%	0	-	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	HMMPfam_Amidase_2,HMMSmart_SM00644,superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701
S100A7	6278	genome.wustl.edu	37	1	153430401	153430401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002963.3	-1	reviewed	p.D63Y	0.011	215	0%	217	23%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_S100_CABP,PatternScan_EF_HAND_1,superfamily_SSF47473
ILF2	3608	genome.wustl.edu	37	1	153636900	153636900	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004515.2	-1	reviewed	p.W210G	1.000	182	0%	138	27.5%	482	41.9%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_DZF,HMMSmart_SM00572
ENSG00000234010	0	genome.wustl.edu	37	1	153907566	153907566	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000413970	+1	known	NULL	0.000	16	0%	17	29.4%	0	-	-	-	-	-
RAB13	5872	genome.wustl.edu	37	1	153955043	153955043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002870.2	-1	provisional	p.T150P	1.000	156	0%	193	31.6%	149	39.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
NUP210L	91181	genome.wustl.edu	37	1	154090291	154090291	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207308.2	-1	validated	p.T510	0.106	174	0%	175	40%	0	-	-	-	-	superfamily_Invasin_intimin
C1orf43	25912	genome.wustl.edu	37	1	154192369	154192369	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098616.1	-1	validated	p.R37	0.999	58	0%	46	28.3%	119	31.9%	-	-	-	HMMPfam_NICE-3
TDRD10	126668	genome.wustl.edu	37	1	154517359	154517359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098475.1	+1	validated	p.R296C	0.061	176	0%	169	10.7%	0	-	probably_damaging(1)	-	-	HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT
FLAD1	80308	genome.wustl.edu	37	1	154965222	154965222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025207.4	+1	reviewed	p.R530C	1.000	152	0%	178	15.2%	57	28%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAPS_reduct,superfamily_Adenine nucleotide alpha hydrolases-like
ZBTB7B	51043	genome.wustl.edu	37	1	154987340	154987340	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015872.2	+1	validated	p.G68	0.768	145	0%	98	30.6%	14	21.4%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
KRTCAP2	200185	genome.wustl.edu	37	1	155145087	155145087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173852.3	-1	validated	p.E85D	1.000	191	0%	164	18.3%	396	16.6%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_Keratin_assoc
RUSC1-AS1	284618	genome.wustl.edu	37	1	155290615	155290615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039517.1	-1	predicted	p.A222V	0.000	69	0%	96	34.4%	0	-	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155448327	155448327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018489.2	-1	reviewed	p.K1445T	1.000	182	0%	180	24.4%	4	50%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155449676	155449676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018489.2	-1	reviewed	p.K995N	1.000	236	0%	232	30.2%	0	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155491082	155491082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018489.2	-1	reviewed	p.E77*	1.000	994	0%	982	30.3%	0	-	-	-	-	NULL
MSTO1	55154	genome.wustl.edu	37	1	155582702	155582702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018116.2	+1	validated	p.R345H	1.000	89	0%	92	30.4%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tubulin nucleotide-binding domain-like
YY1AP1	55249	genome.wustl.edu	37	1	155646361	155646361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139118.1	-1	reviewed	p.R167I	0.979	315	0%	305	27.5%	28	35.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GON4L	54856	genome.wustl.edu	37	1	155726770	155726770	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037533.1	-1	validated	p.I1832	0.940	111	0%	116	31%	7	42.8%	-	-	-	NULL
GON4L	54856	genome.wustl.edu	37	1	155735914	155735914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037533.1	-1	validated	p.R1117Q	0.013	126	0.8%	122	34.4%	6	66.6%	possibly_damaging(0.9)	tolerated(0.14)	deleterious(0.606)	NULL
SYT11	23208	genome.wustl.edu	37	1	155850988	155850988	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152280.4	+1	reviewed	e4-1	1.000	478	0%	437	25.4%	0	-	-	-	-	-
KIAA0907	22889	genome.wustl.edu	37	1	155896610	155896610	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014949.2	-1	predicted	p.E180*	1.000	144	0%	141	35.5%	6	33.3%	-	-	-	superfamily_Eukaryotic type KH-domain (KH-domain type I)
RXFP4	339403	genome.wustl.edu	37	1	155911539	155911539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181885.2	+1	validated	p.F13L	0.951	135	0%	112	31.2%	1	0%	benign(0)	tolerated(0.95)	-	superfamily_SSF81321
PMF1	11243	genome.wustl.edu	37	1	156202162	156202162	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007221.2	+1	validated	p.A71	0.643	185	0%	178	32%	72	41.6%	-	-	-	HMMPfam_Nnf1
SMG5	23381	genome.wustl.edu	37	1	156228859	156228859	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015327.2	-1	validated	p.F793	0.994	30	0%	27	29.6%	29	31%	-	-	-	NULL
CCT3	7203	genome.wustl.edu	37	1	156294827	156294827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005998.3	-1	reviewed	p.T120A	0.996	70	0%	41	31.7%	177	42.9%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase
INSRR	3645	genome.wustl.edu	37	1	156812241	156812241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014215.1	-1	validated	p.M1062I	1.000	199	0%	126	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
NTRK1	4914	genome.wustl.edu	37	1	156848967	156848967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002529.3	+1	reviewed	p.G620D	0.911	48	0%	57	31.6%	0	-	probably_damaging(0.979)	tolerated(0.23)	neutral(0.463)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PEAR1	375033	genome.wustl.edu	37	1	156884574	156884574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080471.1	+1	provisional	p.R1033Q	0.019	70	0%	36	41.7%	0	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	NULL
FCRL5	83416	genome.wustl.edu	37	1	157516862	157516862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031281.2	-1	validated	p.R60W	0.000	153	0%	138	31.9%	3	0%	benign(0.004)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCRL4	83417	genome.wustl.edu	37	1	157548550	157548550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000438714	-1	known	p.S457F	0.000	31	0%	46	34.8%	0	-	-	-	-	NULL
FCRL4	83417	genome.wustl.edu	37	1	157559026	157559026	+	Missense_Mutation	SNP	C	C	T	rs138667797	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031282.2	-1	reviewed	p.R92Q	0.000	183	0%	176	27.3%	0	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
FCRL3	115352	genome.wustl.edu	37	1	157668291	157668291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052939.3	-1	reviewed	p.D61N	0.000	184	0%	158	33.5%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	HMMSmart_SM00409,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158064182	158064182	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018240.5	+1	validated	e14+2	0.997	33	0%	29	44.8%	0	-	-	-	-	-
CD1C	911	genome.wustl.edu	37	1	158261938	158261938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001765.2	+1	reviewed	p.F131L	0.009	668	0%	678	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
OR10T2	128360	genome.wustl.edu	37	1	158368614	158368614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004475.1	-1	provisional	p.I215L	0.833	113	0%	94	23.4%	0	-	possibly_damaging(0.601)	deleterious(0.04)	deleterious(0.557)	HMMPfam_7tm_1,superfamily_SSF81321
OR10T2	128360	genome.wustl.edu	37	1	158368668	158368668	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004475.1	-1	provisional	p.E197*	0.716	119	0%	121	28.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10K2	391107	genome.wustl.edu	37	1	158389756	158389756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004476.1	-1	provisional	p.L301I	0.582	136	0%	150	31.3%	0	-	benign(0.01)	tolerated(0.09)	neutral(0.297)	superfamily_SSF81321
OR10K2	391107	genome.wustl.edu	37	1	158390348	158390348	+	Silent	SNP	G	G	T	rs191673533	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004476.1	-1	provisional	p.S103	0.005	428	0.2%	374	31.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158589094	158589094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003126.2	-1	reviewed	p.A2150T	0.003	253	0%	238	28.2%	0	-	benign(0.018)	tolerated(0.06)	neutral(0.323)	superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158615027	158615027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003126.2	-1	reviewed	p.K1382M	1.000	310	0%	260	25.8%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158621162	158621162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003126.2	-1	reviewed	p.R1158W	0.473	165	0%	142	33.1%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158626432	158626432	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003126.2	-1	reviewed	p.K940	0.998	196	0%	197	27.9%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158655006	158655006	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003126.2	-1	reviewed	p.S52	0.999	185	0.5%	174	32.8%	0	-	-	-	-	superfamily_Spectrin repeat
OR6K2	81448	genome.wustl.edu	37	1	158670372	158670372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005279.1	-1	provisional	p.S24Y	0.005	395	0%	314	19.1%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_Family A G protein-coupled receptor-like
OR6N1	128372	genome.wustl.edu	37	1	158736164	158736164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005185.1	-1	provisional	p.F103L	1.000	258	0%	274	19.7%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_7tm_1,superfamily_SSF81321
OR6N2	81442	genome.wustl.edu	37	1	158747148	158747148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005278.1	-1	provisional	p.S93Y	1.000	747	0.1%	752	30.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
MNDA	4332	genome.wustl.edu	37	1	158813174	158813174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002432.1	+1	reviewed	p.S124L	0.000	77	0%	97	27.8%	2	0%	benign(0.353)	tolerated(0.07)	neutral(0.430)	NULL
MNDA	4332	genome.wustl.edu	37	1	158815720	158815720	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002432.1	+1	reviewed	p.K305T	0.000	177	0%	177	28.8%	13	0%	possibly_damaging(0.719)	tolerated(0.36)	neutral(0.281)	HMMPfam_HIN
PYHIN1	149628	genome.wustl.edu	37	1	158906748	158906748	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152501.3	+1	validated	p.V16	0.000	192	0%	155	26.5%	0	-	-	-	-	HMMPfam_PAAD_DAPIN
PYHIN1	149628	genome.wustl.edu	37	1	158911835	158911835	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152501.3	+1	validated	p.I216	0.017	112	0%	72	30.6%	1	0%	-	-	-	HMMPfam_HIN
IFI16	3428	genome.wustl.edu	37	1	158984515	158984515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005531.2	+1	reviewed	p.E15D	0.000	243	0%	200	16%	8	0%	possibly_damaging(0.45)	deleterious(0.04)	deleterious(0.496)	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
IFI16	3428	genome.wustl.edu	37	1	158984677	158984677	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005531.2	+1	reviewed	p.F69	0.000	343	0%	285	31.6%	16	0%	-	-	-	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
AIM2	9447	genome.wustl.edu	37	1	159035917	159035917	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004833.1	-1	reviewed	p.K200T	0.012	258	0%	193	13.5%	2	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_HIN
AIM2	9447	genome.wustl.edu	37	1	159035991	159035991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004833.1	-1	reviewed	p.E175D	0.389	291	0%	212	34%	2	0%	benign(0.256)	tolerated(0.22)	neutral(0.069)	HMMPfam_HIN
AIM2	9447	genome.wustl.edu	37	1	159043239	159043239	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004833.1	-1	reviewed	p.I17	0.003	234	0%	209	30.6%	1	0%	-	-	-	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
FCER1A	2205	genome.wustl.edu	37	1	159273786	159273786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002001.2	+1	reviewed	p.L49I	0.114	139	0%	148	23.6%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
OR10J1	26476	genome.wustl.edu	37	1	159410228	159410228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012351.2	+1	validated	p.S227Y	0.975	206	0%	212	34.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10J5	127385	genome.wustl.edu	37	1	159504990	159504990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004469.1	-1	provisional	p.D270Y	0.997	249	0%	174	27.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TAGLN2	8407	genome.wustl.edu	37	1	159890243	159890243	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003564.1	-1	reviewed	p.E19	1.000	56	0%	75	22.7%	775	44.5%	-	-	-	superfamily_Calponin-homology
IGSF9	57549	genome.wustl.edu	37	1	159901685	159901685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135050.1	-1	validated	p.E427*	1.000	170	0%	146	24.7%	4	0%	-	-	-	superfamily_SSF48726
IGSF8	93185	genome.wustl.edu	37	1	160064854	160064854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052868.2	-1	provisional	p.D83N	1.000	162	0%	127	33.1%	96	36.4%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ATP1A2	477	genome.wustl.edu	37	1	160105654	160105654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000702.3	+1	reviewed	p.K770N	1.000	286	0%	338	30.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81665
ATP1A4	480	genome.wustl.edu	37	1	160141530	160141530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144699.3	+1	reviewed	p.R613C	1.000	181	0%	166	36.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
PEX19	5824	genome.wustl.edu	37	1	160253319	160253319	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002857.3	-1	reviewed	e2+1	1.000	32	0%	36	38.9%	0	-	-	-	-	-
PEX19	5824	genome.wustl.edu	37	1	160253339	160253339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002857.3	-1	reviewed	p.S54L	1.000	36	0%	39	30.8%	8	75%	benign(0.079)	tolerated(0.24)	neutral(0.043)	NULL
COPA	1314	genome.wustl.edu	37	1	160295403	160295403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098398.1	-1	reviewed	p.S179L	0.999	307	0%	203	31%	55	41.8%	benign(0.003)	tolerated(0.37)	neutral(0.019)	superfamily_WD40_like
COPA	1314	genome.wustl.edu	37	1	160305094	160305094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098398.1	-1	reviewed	p.R83W	1.000	100	0%	56	26.8%	51	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CD48	962	genome.wustl.edu	37	1	160648862	160648862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001778.2	-1	provisional	p.L238I	0.000	170	0%	175	28.6%	22	0%	possibly_damaging(0.49)	tolerated(0.55)	neutral(0.170)	NULL
SLAMF7	57823	genome.wustl.edu	37	1	160722947	160722947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021181.3	+1	provisional	p.A330S	0.000	110	0%	96	28.1%	6	0%	benign(0)	tolerated(0.9)	-	NULL
LY9	4063	genome.wustl.edu	37	1	160769685	160769685	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002348.2	+1	validated	p.F89	0.000	175	0%	123	34.1%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
CD244	51744	genome.wustl.edu	37	1	160808276	160808276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016382.3	-1	reviewed	p.E267K	0.995	254	0%	234	24.8%	0	-	probably_damaging(0.995)	tolerated(0.15)	deleterious(0.699)	NULL
ITLN1	55600	genome.wustl.edu	37	1	160851887	160851887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017625.2	-1	validated	p.D89Y	0.109	123	0%	130	36.9%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	superfamily_Fibrinogen C-terminal domain-like
ITLN2	142683	genome.wustl.edu	37	1	160922485	160922485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080878.2	-1	validated	p.E40K	0.000	120	0%	105	31.4%	0	-	possibly_damaging(0.602)	tolerated(0.22)	neutral(0.251)	superfamily_Fibrinogen C-terminal domain-like
USF1	7391	genome.wustl.edu	37	1	161012364	161012364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007122.3	-1	reviewed	p.R52Q	1.000	64	0%	52	34.6%	10	10%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161018629	161018629	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025598.1	-1	validated	p.S728R	0.000	690	0%	531	28.8%	9	11.1%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161024200	161024200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025598.1	-1	validated	p.M164I	1.000	14	0%	18	33.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
NIT1	4817	genome.wustl.edu	37	1	161089367	161089367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005600.1	+1	provisional	p.K141T	1.000	52	0%	82	29.3%	33	36.3%	possibly_damaging(0.864)	deleterious(0.02)	deleterious(0.718)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
B4GALT3	8703	genome.wustl.edu	37	1	161145604	161145604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003779.2	-1	reviewed	p.L83I	0.976	675	0%	683	31.6%	28	39.2%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
HSPA6	3310	genome.wustl.edu	37	1	161495037	161495037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002155.3	+1	validated	p.V197M	0.996	28	0%	16	43.8%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
FCGR2C	9103	genome.wustl.edu	37	1	161569434	161569434	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201563.4	+1	reviewed	p.Q271H	0.005	129	0%	143	30.1%	8	0%	possibly_damaging(0.842)	tolerated(0.07)	deleterious(0.641)	NULL
ATF6	22926	genome.wustl.edu	37	1	161789484	161789484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007348.2	+1	validated	p.R324H	1.000	132	0%	146	36.3%	15	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1
ATF6	22926	genome.wustl.edu	37	1	161790891	161790891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007348.2	+1	validated	p.R376Q	1.000	188	0%	179	30.2%	13	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ATF6	22926	genome.wustl.edu	37	1	161833097	161833097	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007348.2	+1	validated	p.R572*	1.000	130	0%	109	25.7%	31	3.2%	-	-	-	NULL
OLFML2B	25903	genome.wustl.edu	37	1	161970098	161970098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015441.1	-1	provisional	p.V252M	0.995	94	0%	123	23.6%	29	0%	possibly_damaging(0.746)	deleterious(0.02)	deleterious(0.657)	NULL
DDR2	4921	genome.wustl.edu	37	1	162745581	162745581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014796.1	+1	reviewed	p.L666I	1.000	400	0%	341	28.4%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
RGS4	5999	genome.wustl.edu	37	1	163039240	163039240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102445.2	+1	reviewed	p.S86Y	0.000	51	0%	54	48.1%	0	-	unknown(0)	deleterious(0)	-	NULL
RGS4	5999	genome.wustl.edu	37	1	163043373	163043373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102445.2	+1	reviewed	p.K210N	1.000	130	0%	126	11.9%	3	0%	benign(0.059)	tolerated(0.08)	neutral(0.304)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
RGS4	5999	genome.wustl.edu	37	1	163044194	163044194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102445.2	+1	reviewed	p.K251N	1.000	582	0%	532	31.4%	3	0%	benign(0.186)	tolerated(0.14)	neutral(0.267)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
RXRG	6258	genome.wustl.edu	37	1	165378874	165378874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006917.3	-1	reviewed	p.D323Y	1.000	27	0%	52	28.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
RXRG	6258	genome.wustl.edu	37	1	165397995	165397995	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006917.3	-1	reviewed	p.A86	0.727	63	0%	59	45.8%	0	-	-	-	-	NULL
LRRC52	440699	genome.wustl.edu	37	1	165513903	165513903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005214.3	+1	validated	p.L124I	0.987	406	0%	422	30.8%	0	-	probably_damaging(0.999)	tolerated(0.41)	deleterious(0.505)	HMMPfam_LRR_1,superfamily_SSF52058
TMCO1	54499	genome.wustl.edu	37	1	165721402	165721402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019026.3	-1	validated	p.R87Q	1.000	103	0%	81	27.2%	163	35.5%	possibly_damaging(0.493)	deleterious(0)	deleterious(0.609)	HMMPfam_DUF841
TMCO1	54499	genome.wustl.edu	37	1	165723481	165723481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019026.3	-1	validated	p.N80T	1.000	119	0%	78	35.9%	145	56.5%	possibly_damaging(0.675)	deleterious(0.01)	deleterious(0.645)	HMMPfam_DUF841
POGK	57645	genome.wustl.edu	37	1	166818706	166818706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017542.3	+1	reviewed	p.N297S	1.000	86	0%	106	36.8%	15	33.3%	benign(0.388)	tolerated(0.11)	neutral(0.396)	HMMSmart_SM00674,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind
ILDR2	387597	genome.wustl.edu	37	1	166927298	166927298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199351.1	-1	provisional	p.K29N	1.000	201	0%	195	33.3%	0	-	possibly_damaging(0.922)	tolerated(0.09)	deleterious(0.668)	HMMSmart_IG,superfamily_SSF48726
MAEL	84944	genome.wustl.edu	37	1	166959019	166959019	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032858.1	+1	validated	p.E60*	0.984	48	0%	34	14.7%	0	-	-	-	-	superfamily_HMG-box,HMMPfam_DUF1898
POU2F1	5451	genome.wustl.edu	37	1	167341173	167341173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002697.2	+1	provisional	p.S78L	0.985	423	0%	481	30.1%	3	66.6%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
POU2F1	5451	genome.wustl.edu	37	1	167353143	167353143	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002697.2	+1	provisional	p.Q233	1.000	233	0%	207	25.6%	1	100%	-	-	-	NULL
CREG1	8804	genome.wustl.edu	37	1	167515477	167515477	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003851.2	-1	reviewed	p.R174*	0.986	58	0%	48	27.1%	47	2.1%	-	-	-	superfamily_FMN-binding split barrel
ADCY10	55811	genome.wustl.edu	37	1	167814993	167814993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018417.4	-1	reviewed	p.E939K	0.997	111	0%	96	30.2%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
DCAF6	55827	genome.wustl.edu	37	1	167962640	167962640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018442.2	+1	validated	p.E289K	1.000	88	0%	89	33.7%	15	40%	probably_damaging(0.982)	tolerated(0.52)	neutral(0.435)	superfamily_WD40_like
DCAF6	55827	genome.wustl.edu	37	1	168044653	168044653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018442.2	+1	validated	p.E875*	1.000	94	0%	87	25.3%	33	36.3%	-	-	-	NULL
GPR161	23432	genome.wustl.edu	37	1	168066442	168066442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153832.1	-1	provisional	p.Y135H	1.000	119	0%	69	26.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BLZF1	8548	genome.wustl.edu	37	1	169345936	169345936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003666.2	+1	validated	p.L63I	1.000	317	0%	249	30.5%	10	0%	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	NULL
C1orf114	57821	genome.wustl.edu	37	1	169391220	169391220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021179.1	-1	predicted	p.R150Q	0.799	350	0%	293	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC19A2	10560	genome.wustl.edu	37	1	169435152	169435152	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006996.2	-1	reviewed	p.S477R	0.996	196	0%	176	27.8%	15	86.6%	benign(0.132)	tolerated(0.62)	neutral(0.015)	superfamily_MFS general substrate transporter
F5	2153	genome.wustl.edu	37	1	169511959	169511959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000130.4	-1	reviewed	p.N790S	0.010	464	0%	408	29.9%	1	0%	benign(0.085)	deleterious(0.01)	neutral(0.412)	NULL
SELP	6403	genome.wustl.edu	37	1	169565238	169565238	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003005.3	-1	reviewed	p.F676I	0.969	780	0%	777	31.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SELL	6402	genome.wustl.edu	37	1	169672435	169672435	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000655.4	-1	reviewed	p.S305A	0.074	48	0%	53	20.8%	0	-	benign(0.008)	tolerated(1)	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
SELL	6402	genome.wustl.edu	37	1	169676499	169676499	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000655.4	-1	reviewed	p.G188	0.975	205	0%	153	34%	6	0%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196
METTL18	92342	genome.wustl.edu	37	1	169761782	169761782	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033418.1	-1	provisional	p.L352R	0.464	96	0%	83	25.3%	4	75%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
C1orf112	55732	genome.wustl.edu	37	1	169777011	169777011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018186.2	+1	predicted	p.L215I	0.752	256	0.8%	170	35.3%	5	40%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
C1orf129	80133	genome.wustl.edu	37	1	170961422	170961422	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025063.2	+1	validated	p.T382	0.000	267	0%	193	23.8%	0	-	-	-	-	NULL
C1orf129	80133	genome.wustl.edu	37	1	170965723	170965723	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000426136	+1	known	p.E78*	0.001	375	0%	230	14.3%	0	-	benign(0.025)	tolerated(0.17)	neutral(0.060)	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171482160	171482160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015172.3	+1	validated	p.L45I	1.000	223	0%	189	29.1%	6	66.6%	unknown(0)	-	-	HMMPfam_BAT2_N
C1orf9	51430	genome.wustl.edu	37	1	172539284	172539284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014283.3	+1	validated	p.K318N	1.000	46	0%	23	43.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose-binding domain-like
C1orf9	51430	genome.wustl.edu	37	1	172579251	172579251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014283.3	+1	validated	p.R1206Q	1.000	291	0%	230	28.7%	9	11.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TNFSF4	7292	genome.wustl.edu	37	1	173157689	173157689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003326.3	-1	reviewed	p.R58Q	0.391	201	0%	142	12%	0	-	possibly_damaging(0.516)	tolerated(0.08)	deleterious(0.473)	NULL
LOC646870	646870	genome.wustl.edu	37	1	173332765	173332765	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_040282.2	-1	model	NULL	0.762	124	0%	89	33.7%	0	-	-	-	-	-
PRDX6	9588	genome.wustl.edu	37	1	173456983	173456983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004905.2	+1	reviewed	p.R219H	1.000	121	0%	159	30.8%	305	44.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Thioredoxin-like
ANKRD45	339416	genome.wustl.edu	37	1	173628241	173628241	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198493.2	-1	validated	p.K106T	0.872	188	0%	155	35.5%	0	-	benign(0.15)	tolerated(0.37)	neutral(0.032)	HMMPfam_Ank,superfamily_Ankyrin repeat
KLHL20	27252	genome.wustl.edu	37	1	173703126	173703126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014458.3	+1	reviewed	p.E100K	1.000	215	0%	205	30.2%	5	20%	benign(0.01)	tolerated(0.05)	neutral(0.346)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
DARS2	55157	genome.wustl.edu	37	1	173822993	173822993	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018122.4	+1	reviewed	p.R542*	1.000	87	0%	79	19%	34	0%	-	-	-	HMMPfam_tRNA-synt_2,superfamily_SSF55681
RC3H1	149041	genome.wustl.edu	37	1	173951907	173951907	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172071.2	-1	validated	p.I242	0.998	367	0%	258	21.3%	0	-	-	-	-	NULL
RABGAP1L	9910	genome.wustl.edu	37	1	174210750	174210750	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014857.3	+1	validated	p.S224	0.998	143	0%	100	22%	2	0%	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
TNN	63923	genome.wustl.edu	37	1	175049316	175049316	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022093.1	+1	validated	p.L268	0.964	73	0%	27	25.9%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TNN	63923	genome.wustl.edu	37	1	175087821	175087821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022093.1	+1	validated	p.E837D	0.916	236	0%	195	34.4%	0	-	benign(0.007)	tolerated(0.63)	neutral(0.004)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNR	7143	genome.wustl.edu	37	1	175299322	175299322	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003285.2	-1	validated	p.R1227	0.001	216	0%	253	39.5%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
TNR	7143	genome.wustl.edu	37	1	175325554	175325554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003285.2	-1	validated	p.R1007W	1.000	235	0%	181	34.3%	0	-	possibly_damaging(0.893)	deleterious(0.03)	deleterious(0.716)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RFWD2	64326	genome.wustl.edu	37	1	176132077	176132077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022457.5	-1	validated	p.Q230H	1.000	160	0%	150	31.3%	19	31.5%	possibly_damaging(0.808)	tolerated(0.12)	deleterious(0.565)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176563750	176563750	+	Missense_Mutation	SNP	G	G	A	rs150105070	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020318.2	+1	validated	p.R337H	1.000	138	0.7%	92	22.8%	0	-	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	HMMSmart_SM00560,superfamily_Concanavalin A-like lectins/glucanases
PAPPA2	60676	genome.wustl.edu	37	1	176564207	176564207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020318.2	+1	validated	p.E489D	0.735	186	0%	159	28.3%	0	-	benign(0.178)	tolerated(0.24)	neutral(0.054)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176564676	176564676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020318.2	+1	validated	p.D646N	0.998	102	0%	83	28.9%	0	-	possibly_damaging(0.866)	tolerated(0.34)	neutral(0.359)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
SEC16B	89866	genome.wustl.edu	37	1	177911106	177911106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033127.2	-1	validated	p.E651K	1.000	98	0%	95	33.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177934260	177934260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033127.2	-1	validated	p.R152Q	0.002	32	0%	30	16.7%	0	-	benign(0.018)	tolerated(0.36)	neutral(0.021)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177937094	177937094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033127.2	-1	validated	p.R8M	0.001	48	0%	42	21.4%	0	-	possibly_damaging(0.888)	tolerated(0.05)	deleterious(0.693)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178423602	178423602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170692.2	+1	reviewed	p.Y659C	1.000	285	0%	228	30.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_RasGAP,superfamily_Rho_GAP
C1orf49	84066	genome.wustl.edu	37	1	178485789	178485789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032126.4	+1	validated	p.E86K	0.998	63	0%	29	24.1%	0	-	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
ANGPTL1	9068	genome.wustl.edu	37	1	178834782	178834782	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004673.3	-1	reviewed	p.E44*	1.000	180	0%	217	34.1%	0	-	-	-	-	NULL
ABL2	27	genome.wustl.edu	37	1	179077329	179077329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007314.3	-1	reviewed	p.A1025T	1.000	112	0%	79	26.6%	3	0%	benign(0.087)	tolerated(0.1)	neutral(0.293)	HMMPfam_F_actin_bind
ABL2	27	genome.wustl.edu	37	1	179078125	179078125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007314.3	-1	reviewed	p.K759N	1.000	103	0%	81	38.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ABL2	27	genome.wustl.edu	37	1	179100501	179100501	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007314.3	-1	reviewed	p.F112	0.997	163	0%	175	29.7%	0	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SOAT1	6646	genome.wustl.edu	37	1	179292605	179292605	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003101.4	+1	provisional	p.K51T	1.000	76	0%	68	32.4%	3	0%	possibly_damaging(0.561)	deleterious(0.03)	deleterious(0.556)	NULL
AXDND1	126859	genome.wustl.edu	37	1	179494534	179494534	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144696.4	+1	validated	p.S854	0.000	144	0%	157	33.1%	0	-	-	-	-	NULL
NPHS2	7827	genome.wustl.edu	37	1	179526197	179526197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014625.2	-1	reviewed	p.L235I	1.000	88	0%	116	33.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Band_7,HMMSmart_SM00244
NPHS2	7827	genome.wustl.edu	37	1	179533877	179533877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014625.2	-1	reviewed	p.S109F	0.968	166	0.6%	157	33.8%	0	-	unknown(0)	deleterious(0)	-	NULL
TDRD5	163589	genome.wustl.edu	37	1	179562608	179562608	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173533.2	+1	provisional	p.E82	1.000	111	0%	55	29.1%	0	-	-	-	-	NULL
TDRD5	163589	genome.wustl.edu	37	1	179632482	179632482	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173533.2	+1	provisional	e14-1	0.882	298	0%	174	24.1%	0	-	-	-	-	-
TDRD5	163589	genome.wustl.edu	37	1	179660016	179660016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173533.2	+1	provisional	p.R962W	0.050	65	0%	60	36.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TOR1AIP2	163590	genome.wustl.edu	37	1	179815330	179815330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145034.3	-1	validated	p.D430G	0.002	113	0%	136	34.6%	0	-	benign(0.009)	tolerated(0.5)	neutral(0.011)	HMMPfam_LAP1C
CEP350	9857	genome.wustl.edu	37	1	180006096	180006096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014810.4	+1	reviewed	p.R1328C	1.000	18	0%	18	22.2%	1	100%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
CEP350	9857	genome.wustl.edu	37	1	180022189	180022189	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014810.4	+1	reviewed	p.S1626*	1.000	161	0%	141	29.8%	0	-	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180061833	180061833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014810.4	+1	reviewed	p.R2198Q	0.000	52	0%	27	44.4%	0	-	benign(0.038)	tolerated(0.46)	neutral(0.014)	NULL
QSOX1	5768	genome.wustl.edu	37	1	180153184	180153184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002826.4	+1	reviewed	p.R296C	1.000	312	0%	263	27%	122	48.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ACBD6	84320	genome.wustl.edu	37	1	180461490	180461490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032360.3	-1	validated	p.K100E	1.000	173	0%	122	28.7%	51	45%	probably_damaging(0.981)	tolerated(0.06)	deleterious(0.748)	HMMPfam_ACBP,superfamily_ACBP
XPR1	9213	genome.wustl.edu	37	1	180849378	180849378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004736.3	+1	validated	p.R659W	1.000	157	0%	136	37.5%	22	59%	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	NULL
MR1	3140	genome.wustl.edu	37	1	181018257	181018257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001531.1	+1	provisional	p.S46L	0.095	56	0%	34	32.4%	2	0%	probably_damaging(0.955)	tolerated(0.13)	deleterious(0.651)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
MR1	3140	genome.wustl.edu	37	1	181018422	181018422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001531.1	+1	provisional	p.R101H	0.000	31	0%	21	28.6%	3	0%	benign(0.003)	deleterious(0.05)	neutral(0.345)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
MR1	3140	genome.wustl.edu	37	1	181021641	181021641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001531.1	+1	provisional	p.P292L	0.006	57	0%	38	28.9%	4	0%	benign(0.139)	tolerated(0.07)	neutral(0.331)	superfamily_Immunoglobulin
CACNA1E	777	genome.wustl.edu	37	1	181684473	181684473	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000721.2	+1	reviewed	e9-1	1.000	35	0%	27	14.8%	0	-	-	-	-	-
CACNA1E	777	genome.wustl.edu	37	1	181701978	181701978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000721.2	+1	reviewed	p.R919Q	1.000	133	0%	95	20%	0	-	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181702645	181702645	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000721.2	+1	reviewed	p.V1007	0.002	83	0%	67	25.4%	0	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181705487	181705487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000721.2	+1	reviewed	p.K1113N	0.974	31	0%	24	29.2%	0	-	benign(0.263)	tolerated(0.08)	neutral(0.328)	superfamily_Voltage-gated potassium channels
ZNF648	127665	genome.wustl.edu	37	1	182026755	182026755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009992.1	-1	provisional	p.A131T	0.000	86	0%	77	22.1%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
ZNF648	127665	genome.wustl.edu	37	1	182027057	182027057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009992.1	-1	provisional	p.S30I	0.019	121	0%	100	41%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
ZNF648	127665	genome.wustl.edu	37	1	182027108	182027108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009992.1	-1	provisional	p.A13V	0.000	103	0%	95	24.2%	0	-	benign(0)	tolerated(1)	-	NULL
TEDDM1	127670	genome.wustl.edu	37	1	182369115	182369115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172000.3	-1	validated	p.S169Y	1.000	123	0%	157	29.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF716
RNASEL	6041	genome.wustl.edu	37	1	182545506	182545506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021133.2	-1	reviewed	p.K642E	0.000	80	0%	80	33.8%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_Ribonuc_2-5A
SHCBP1L	81626	genome.wustl.edu	37	1	182869308	182869308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030933.2	-1	validated	p.G591V	1.000	88	0%	72	31.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_PbH1,superfamily_Pectin_lyas_like
SHCBP1L	81626	genome.wustl.edu	37	1	182921884	182921884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030933.2	-1	validated	p.E129K	0.878	14	0.000	9	0.444	0	-	benign(0.004)	tolerated(0.2)	neutral(0.049)	NULL
LAMC1	3915	genome.wustl.edu	37	1	183111751	183111751	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002293.3	+1	reviewed	p.S1552	0.327	152	0%	98	33.7%	211	41.2%	-	-	-	NULL
SMG7	9887	genome.wustl.edu	37	1	183486803	183486803	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000444547	+1	known	p.*74Y	1.000	197	0%	165	25.5%	1	0%	-	-	-	NULL
RGL1	23179	genome.wustl.edu	37	1	183885604	183885604	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015149.3	+1	validated	p.C626	0.985	222	0%	218	41.3%	3	0%	-	-	-	NULL
GLT25D2	23127	genome.wustl.edu	37	1	183914602	183914602	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015101.2	-1	validated	p.I411	0.126	325	0%	280	30.7%	2	0%	-	-	-	HMMPfam_Glyco_transf_25
SWT1	54823	genome.wustl.edu	37	1	185130006	185130006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105518.1	+1	validated	p.E11D	0.755	374	0%	289	22.5%	0	-	benign(0.181)	deleterious(0)	neutral(0.461)	NULL
HMCN1	83872	genome.wustl.edu	37	1	185833660	185833660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031935.2	+1	reviewed	p.S133Y	1.000	215	0%	191	34.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_vWA-like
HMCN1	83872	genome.wustl.edu	37	1	185878513	185878513	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031935.2	+1	reviewed	p.H222	1.000	129	0%	114	34.2%	0	-	-	-	-	superfamily_vWA-like
HMCN1	83872	genome.wustl.edu	37	1	185959469	185959469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031935.2	+1	reviewed	p.V1091I	1.000	440	0%	387	26.9%	0	-	possibly_damaging(0.889)	tolerated(0.47)	neutral(0.360)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186026424	186026424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031935.2	+1	reviewed	p.K2401N	1.000	281	0%	200	28.5%	0	-	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186050501	186050501	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031935.2	+1	reviewed	p.F2921C	0.426	410	0%	326	29.8%	0	-	possibly_damaging(0.654)	deleterious(0.04)	deleterious(0.579)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186143645	186143645	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031935.2	+1	reviewed	e103-1	1.000	157	0%	136	33.8%	0	-	-	-	-	-
PRG4	10216	genome.wustl.edu	37	1	186273349	186273349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005807.3	+1	reviewed	p.K143N	1.000	178	0%	175	30.3%	0	-	unknown(0)	tolerated(0.09)	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186275670	186275670	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005807.3	+1	reviewed	p.E273	0.112	240	0%	197	30.5%	0	-	-	-	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186277699	186277699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005807.3	+1	reviewed	p.E950K	0.000	106	0%	105	29.5%	0	-	unknown(0)	deleterious(0)	-	NULL
TPR	7175	genome.wustl.edu	37	1	186304589	186304589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003292.2	-1	reviewed	p.R1598C	1.000	213	0%	150	37.3%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTGS2	5743	genome.wustl.edu	37	1	186648497	186648497	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000963.2	-1	reviewed	p.C42	0.998	98	1%	74	37.8%	1	0%	-	-	-	HMMPfam_EGF,superfamily_EGF/Laminin
PLA2G4A	5321	genome.wustl.edu	37	1	186862208	186862208	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024420.2	+1	reviewed	p.R61	0.997	348	0%	304	27%	9	66.6%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PLA2G4A	5321	genome.wustl.edu	37	1	186946857	186946857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024420.2	+1	reviewed	p.D633Y	1.000	276	0%	204	31.9%	29	65.5%	possibly_damaging(0.51)	deleterious(0.02)	deleterious(0.554)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
FAM5C	339479	genome.wustl.edu	37	1	190067580	190067580	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199051.1	-1	provisional	p.E623	1.000	504	0%	345	25.8%	0	-	-	-	-	NULL
FAM5C	339479	genome.wustl.edu	37	1	190068098	190068098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199051.1	-1	provisional	p.T451A	0.757	69	0%	72	29.2%	0	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
FAM5C	339479	genome.wustl.edu	37	1	190129923	190129923	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199051.1	-1	provisional	p.R353	1.000	218	0%	207	27.5%	0	-	-	-	-	NULL
RGS21	431704	genome.wustl.edu	37	1	192321288	192321288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039152.3	+1	validated	p.A67D	0.995	82	0%	60	26.7%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
RGS1	5996	genome.wustl.edu	37	1	192548420	192548420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002922.3	+1	reviewed	p.L200I	0.997	192	0%	183	34.4%	17	0%	possibly_damaging(0.826)	tolerated(0.95)	neutral(0.314)	HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS13	6003	genome.wustl.edu	37	1	192627471	192627471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002927.3	+1	reviewed	p.Y90D	0.995	137	0%	105	31.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
KCNT2	343450	genome.wustl.edu	37	1	196197412	196197412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198503.2	-1	validated	p.R1117Q	0.989	103	0%	93	33.3%	0	-	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196205127	196205127	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198503.2	-1	validated	p.L1095	1.000	261	0%	202	30.7%	0	-	-	-	-	NULL
KCNT2	343450	genome.wustl.edu	37	1	196395070	196395070	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198503.2	-1	validated	p.R345*	1.000	124	0%	171	29.8%	0	-	-	-	-	NULL
KCNT2	343450	genome.wustl.edu	37	1	196451500	196451500	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198503.2	-1	validated	p.I95	0.968	93	0%	86	27.9%	0	-	-	-	-	NULL
CFH	3075	genome.wustl.edu	37	1	196709837	196709837	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000186.3	+1	reviewed	p.Y957	0.423	200	0%	169	32.5%	7	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFH	3075	genome.wustl.edu	37	1	196714950	196714950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000186.3	+1	reviewed	p.S1105Y	0.011	263	0%	229	25.3%	11	0%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	superfamily_Complement control module/SCR domain
CFHR4	10877	genome.wustl.edu	37	1	196881872	196881872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006684.2	+1	validated	p.T87S	0.970	150	0%	93	31.2%	0	-	possibly_damaging(0.67)	tolerated(0.65)	neutral(0.240)	superfamily_Complement_control_module
CFHR4	10877	genome.wustl.edu	37	1	196881927	196881927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006684.2	+1	validated	p.S105Y	0.000	189	0%	132	16.7%	0	-	benign(0.017)	tolerated(0.21)	neutral(0.044)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR4	10877	genome.wustl.edu	37	1	196883708	196883708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006684.2	+1	validated	p.E175*	0.454	88	0%	61	34.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197025017	197025017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001994.2	-1	reviewed	p.E394D	0.657	196	0%	143	36.4%	0	-	probably_damaging(0.983)	tolerated(0.49)	neutral(0.440)	superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197026458	197026458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001994.2	-1	reviewed	p.R315C	0.589	315	0%	255	29.4%	0	-	probably_damaging(0.961)	tolerated(0.18)	neutral(0.460)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197071296	197071296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018136.4	-1	reviewed	p.V2362A	0.000	169	0%	173	28.9%	0	-	benign(0.065)	tolerated(0.06)	neutral(0.327)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB41	360023	genome.wustl.edu	37	1	197168690	197168690	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194314.2	-1	validated	p.E305A	0.996	309	0%	282	26.6%	0	-	benign(0.076)	deleterious(0)	neutral(0.450)	NULL
ZBTB41	360023	genome.wustl.edu	37	1	197169117	197169117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194314.2	-1	validated	p.K163Q	1.000	103	0%	88	29.5%	0	-	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
DENND1B	163486	genome.wustl.edu	37	1	197611950	197611950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142795.1	-1	validated	p.R168I	1.000	41	0%	37	24.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DENN,HMMSmart_SM00799
DENND1B	163486	genome.wustl.edu	37	1	197627435	197627435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142795.1	-1	validated	p.E121K	1.000	205	0%	147	32%	0	-	benign(0.002)	tolerated(0.87)	neutral(0.001)	HMMPfam_DENN,HMMSmart_SM00799
NEK7	140609	genome.wustl.edu	37	1	198222180	198222180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133494.2	+1	validated	p.R23Q	1.000	228	0%	186	34.4%	5	0%	benign(0.034)	tolerated(0.29)	neutral(0.031)	superfamily_Kinase_like
PTPRC	5788	genome.wustl.edu	37	1	198703468	198703468	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002838.3	+1	reviewed	p.E729*	1.000	473	0%	510	32.2%	4	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ZNF281	23528	genome.wustl.edu	37	1	200376936	200376936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012482.3	-1	provisional	p.V633A	1.000	96	0%	127	34.6%	7	0%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
ZNF281	23528	genome.wustl.edu	37	1	200377137	200377137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012482.3	-1	provisional	p.V566A	1.000	47	0%	65	33.8%	0	-	possibly_damaging(0.945)	tolerated(0.07)	deleterious(0.709)	NULL
ZNF281	23528	genome.wustl.edu	37	1	200377415	200377415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012482.3	-1	provisional	p.K473N	0.379	75	0%	72	30.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KIF14	9928	genome.wustl.edu	37	1	200561305	200561305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014875.2	-1	validated	p.K906Q	1.000	155	0%	164	31.1%	2	100%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200817362	200817362	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203459.1	+1	validated	p.E489*	1.000	258	0%	252	27.8%	1	0%	-	-	-	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200818838	200818838	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203459.1	+1	validated	p.N981H	1.000	372	0.3%	403	32.3%	7	28.5%	possibly_damaging(0.749)	tolerated(0.08)	deleterious(0.575)	NULL
CACNA1S	779	genome.wustl.edu	37	1	201044737	201044737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000069.2	-1	reviewed	p.T612A	1.000	297	0%	244	34.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_SSF81324
IGFN1	91156	genome.wustl.edu	37	1	201183353	201183353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000451870	+1	known	p.P469L	0.007	76	0%	33	24.2%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TNNT2	7139	genome.wustl.edu	37	1	201332492	201332492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000364.2	-1	reviewed	p.A178T	1.000	249	0%	155	33.5%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Troponin
TNNT2	7139	genome.wustl.edu	37	1	201337309	201337309	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000364.2	-1	reviewed	p.T48	0.001	59	0%	41	26.8%	0	-	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201751445	201751445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020443.4	+1	reviewed	p.S602L	0.392	333	0%	309	31.7%	9	22.2%	possibly_damaging(0.849)	tolerated(0.07)	deleterious(0.645)	NULL
IPO9	55705	genome.wustl.edu	37	1	201832707	201832707	+	Nonsense_Mutation	SNP	C	C	T	rs12135069		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018085.4	+1	validated	p.R534*	1.000	124	0%	134	31.3%	16	6.2%	-	-	-	superfamily_ARM repeat
LGR6	59352	genome.wustl.edu	37	1	202266662	202266662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017403.1	+1	reviewed	p.E248A	1.000	167	0%	127	33.9%	3	33.3%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like
LGR6	59352	genome.wustl.edu	37	1	202270330	202270330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017403.1	+1	reviewed	p.S299L	0.994	178	0%	148	31.8%	4	25%	probably_damaging(0.994)	tolerated(0.32)	deleterious(0.476)	superfamily_RNI-like
PPP1R12B	4660	genome.wustl.edu	37	1	202396302	202396302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032105.2	+1	reviewed	p.R279Q	0.999	178	0%	158	32.9%	0	-	possibly_damaging(0.501)	tolerated(0.56)	neutral(0.174)	HMMPfam_Ank,superfamily_Ankyrin repeat
PPP1R12B	4660	genome.wustl.edu	37	1	202407121	202407121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032105.2	+1	reviewed	p.R476Q	1.000	231	0%	203	39.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPP1R12B	4660	genome.wustl.edu	37	1	202407145	202407145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032105.2	+1	reviewed	p.K484R	1.000	218	0%	186	29.6%	1	100%	benign(0.01)	deleterious(0)	neutral(0.445)	NULL
KDM5B	10765	genome.wustl.edu	37	1	202727577	202727577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006618.3	-1	validated	p.R380H	0.994	146	0%	117	22.2%	7	57.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KLHL12	59349	genome.wustl.edu	37	1	202878177	202878177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021633.2	-1	provisional	p.R265W	1.000	170	0%	156	28.8%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Gal_oxid_central
TMEM183A	92703	genome.wustl.edu	37	1	202985259	202985259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138391.4	+1	validated	p.K233N	1.000	202	0%	271	27.3%	56	37.5%	possibly_damaging(0.7)	deleterious(0.03)	deleterious(0.616)	NULL
LOC100288349	100288349	genome.wustl.edu	37	1	203311585	203311585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342128.1	+1	model	p.D102N	1.000	25	0%	20	45%	19	21%	-	-	-	NULL
PRELP	5549	genome.wustl.edu	37	1	203453282	203453282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002725.3	+1	reviewed	p.E324K	0.900	81	1.2%	92	21.7%	2	0%	benign(0.009)	tolerated(0.62)	neutral(0.005)	HMMPfam_LRR_1,superfamily_L domain-like
ATP2B4	493	genome.wustl.edu	37	1	203676262	203676262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001684.3	+1	reviewed	p.F409V	1.000	98	0%	88	33%	33	42.4%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
SNRPE	6635	genome.wustl.edu	37	1	203831348	203831348	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003094.2	+1	provisional	p.N27H	1.000	46	0%	50	32%	173	46.2%	possibly_damaging(0.598)	tolerated(0.17)	neutral(0.266)	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
PLEKHA6	22874	genome.wustl.edu	37	1	204219742	204219742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014935.2	-1	validated	p.V509I	1.000	46	0%	31	12.9%	1	0%	possibly_damaging(0.639)	tolerated(0.13)	deleterious(0.476)	NULL
LRRN2	10446	genome.wustl.edu	37	1	204587951	204587951	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006338.2	-1	reviewed	p.I390	0.990	68	0%	42	28.6%	18	72.2%	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
NFASC	23114	genome.wustl.edu	37	1	204913384	204913384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000367169	+1	known	p.R47W	0.262	36	0%	21	23.8%	1	100%	-	-	-	NULL
NFASC	23114	genome.wustl.edu	37	1	204970324	204970324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000367172	+1	known	p.V1123I	0.997	19	0%	26	30.8%	0	-	benign(0.001)	tolerated(0.52)	neutral(0.009)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN2	6900	genome.wustl.edu	37	1	205031672	205031672	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005076.2	+1	reviewed	p.Y405	0.929	53	0%	34	35.3%	0	-	-	-	-	HMMPfam_I-set,superfamily_SSF48726
CDK18	5129	genome.wustl.edu	37	1	205498487	205498487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_212503.2	+1	validated	p.A400T	0.004	66	0%	57	28.1%	4	0%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PM20D1	148811	genome.wustl.edu	37	1	205799418	205799418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152491.4	-1	validated	p.D459N	0.015	141	0%	126	34.9%	0	-	possibly_damaging(0.501)	deleterious(0.01)	deleterious(0.573)	HMMPfam_Peptidase_M20,superfamily_Zn-dependent exopeptidases
PM20D1	148811	genome.wustl.edu	37	1	205799492	205799492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152491.4	-1	validated	p.N434S	0.999	129	0%	111	16.2%	0	-	benign(0.346)	tolerated(0.16)	neutral(0.169)	HMMPfam_Peptidase_M20,superfamily_Zn-dependent exopeptidases
SLC26A9	115019	genome.wustl.edu	37	1	205904837	205904837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_134325.2	-1	reviewed	p.R38C	0.592	138	0%	189	31.2%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
C1orf186	440712	genome.wustl.edu	37	1	206239473	206239473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000331555	-1	known	p.V142A	1.000	111	0%	92	31.5%	6	50%	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	NULL
CTSE	1510	genome.wustl.edu	37	1	206327534	206327534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001910.2	+1	reviewed	p.F241L	1.000	314	0%	282	27%	1	100%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Asp,superfamily_Pept_Aspartic
IKBKE	9641	genome.wustl.edu	37	1	206667274	206667274	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014002.2	+1	validated	p.G689	0.998	40	0%	30	16.7%	17	35.2%	-	-	-	NULL
DYRK3	8444	genome.wustl.edu	37	1	206821626	206821626	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003582.2	+1	reviewed	p.F361	0.482	320	0%	348	35.3%	6	33.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAPKAPK2	9261	genome.wustl.edu	37	1	206902059	206902059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032960.2	+1	reviewed	p.L95R	0.998	38	0%	30	33.3%	33	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IL10	3586	genome.wustl.edu	37	1	206943236	206943236	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000572.2	-1	reviewed	p.R128*	1.000	55	0%	53	41.5%	0	-	-	-	-	superfamily_4-helical cytokines,HMMPfam_IL10,HMMSmart_SM00188
IL20	50604	genome.wustl.edu	37	1	207041897	207041897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018724.3	+1	reviewed	p.E173D	0.946	46	0%	44	29.5%	1	0%	possibly_damaging(0.646)	tolerated(0.44)	neutral(0.239)	superfamily_4_helix_cytokine,HMMPfam_IL10,HMMSmart_IL10
IL24	11009	genome.wustl.edu	37	1	207076347	207076347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006850.2	+1	reviewed	p.K188N	1.000	196	0%	276	30.1%	4	0%	benign(0.113)	deleterious(0)	neutral(0.454)	superfamily_4_helix_cytokine
YOD1	55432	genome.wustl.edu	37	1	207225563	207225563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000367084	-1	known	p.I6M	0.000	74	0%	110	16.4%	0	-	benign(0.076)	tolerated(0.12)	neutral(0.266)	superfamily_SSF54236
C4BPB	725	genome.wustl.edu	37	1	207262894	207262894	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000716.3	+1	reviewed	p.A6	0.000	84	0%	87	26.4%	0	-	-	-	-	NULL
C4BPB	725	genome.wustl.edu	37	1	207263668	207263668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000716.3	+1	reviewed	p.E25G	0.001	140	0%	122	27%	0	-	probably_damaging(0.98)	tolerated(0.2)	deleterious(0.473)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C4BPB	725	genome.wustl.edu	37	1	207265062	207265062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000716.3	+1	reviewed	p.K102N	0.001	151	0%	138	32.6%	0	-	possibly_damaging(0.81)	tolerated(0.15)	deleterious(0.546)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CD55	1604	genome.wustl.edu	37	1	207498083	207498083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114752.1	+1	reviewed	p.E156K	0.027	173	0%	177	11.3%	56	10.7%	possibly_damaging(0.869)	deleterious(0.03)	deleterious(0.702)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR2	1380	genome.wustl.edu	37	1	207643046	207643046	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001006658.2	+1	reviewed	p.F275C	0.999	143	0%	173	31.2%	0	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	superfamily_Complement_control_module
CR1	1378	genome.wustl.edu	37	1	207749006	207749006	+	Silent	SNP	G	G	A	rs56249955	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000651.4	+1	reviewed	p.T1506	0.000	247	0%	215	29.3%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207758001	207758001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000651.4	+1	reviewed	p.F1770L	0.998	343	0%	283	27.6%	0	-	probably_damaging(0.967)	tolerated(1)	neutral(0.409)	superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207758215	207758215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000651.4	+1	reviewed	p.R1842C	0.000	341	0%	296	29.1%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
CD34	947	genome.wustl.edu	37	1	208070891	208070891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025109.1	-1	validated	p.E182K	0.995	11	0%	12	33.3%	17	0%	possibly_damaging(0.862)	tolerated(0.05)	deleterious(0.678)	NULL
TRAF3IP3	80342	genome.wustl.edu	37	1	209955413	209955413	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025228.2	+1	reviewed	p.R506*	0.007	167	0%	125	30.4%	5	40%	-	-	-	NULL
SERTAD4	56256	genome.wustl.edu	37	1	210415597	210415597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019605.3	+1	validated	p.N329S	0.999	106	0%	122	24.6%	1	0%	benign(0)	tolerated(1)	-	NULL
KCNH1	3756	genome.wustl.edu	37	1	211263968	211263968	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172362.2	-1	reviewed	p.L125	1.000	230	0%	160	36.9%	0	-	-	-	-	HMMSmart_SM00086,superfamily_PYP-like sensor domain (PAS domain)
TRAF5	7188	genome.wustl.edu	37	1	211533365	211533365	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033910.2	+1	reviewed	p.R164*	1.000	126	0%	101	28.7%	2	0%	-	-	-	HMMPfam_zf-TRAF,superfamily_TRAF domain-like
INTS7	25896	genome.wustl.edu	37	1	212115237	212115237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015434.2	-1	provisional	p.R940C	1.000	99	0%	81	34.6%	30	46.6%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
DTL	51514	genome.wustl.edu	37	1	212241979	212241979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016448.2	+1	validated	p.L286V	0.987	166	0%	139	34.5%	3	0%	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	superfamily_WD40 repeat-like
PPP2R5A	5525	genome.wustl.edu	37	1	212532091	212532091	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006243.2	+1	reviewed	p.F430	0.916	134	0%	89	62.9%	36	88.8%	-	-	-	HMMPfam_B56,superfamily_ARM repeat
RPS6KC1	26750	genome.wustl.edu	37	1	213277819	213277819	+	Missense_Mutation	SNP	G	G	A	rs56032860		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012424.3	+1	validated	p.E96K	1.000	209	0%	143	24.5%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
RPS6KC1	26750	genome.wustl.edu	37	1	213341224	213341224	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012424.3	+1	validated	p.E287*	1.000	214	0%	193	26.4%	1	0%	-	-	-	HMMPfam_MIT,HMMSmart_SM00745
PROX1	5629	genome.wustl.edu	37	1	214170344	214170344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002763.3	+1	provisional	p.R156C	1.000	244	0%	217	33.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Prox1
SMYD2	56950	genome.wustl.edu	37	1	214491451	214491451	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020197.2	+1	validated	p.E126D	0.999	184	0%	195	21.5%	22	45.4%	probably_damaging(0.976)	tolerated(0.85)	neutral(0.418)	HMMSmart_SET,superfamily_SSF82199
PTPN14	5784	genome.wustl.edu	37	1	214537857	214537857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005401.4	-1	reviewed	p.E1145K	1.000	113	0%	115	30.4%	3	66.6%	probably_damaging(0.986)	deleterious(0.05)	deleterious(0.780)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPN14	5784	genome.wustl.edu	37	1	214625241	214625241	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005401.4	-1	reviewed	p.K84T	1.000	130	0%	107	28%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_B41,superfamily_SSF54236
CENPF	1063	genome.wustl.edu	37	1	214791936	214791936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.R127I	1.000	166	0%	137	28.5%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214792495	214792495	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.E169*	1.000	86	0%	56	21.4%	1	0%	-	-	-	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214794125	214794125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.R234I	0.389	321	0.3%	362	29.8%	1	100%	possibly_damaging(0.462)	deleterious(0.03)	deleterious(0.516)	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214813956	214813956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.E759K	0.232	84	0%	68	38.2%	3	0%	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	superfamily_Spectrin repeat
CENPF	1063	genome.wustl.edu	37	1	214814423	214814423	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.Q914	0.001	140	0%	141	22.7%	4	0%	-	-	-	NULL
CENPF	1063	genome.wustl.edu	37	1	214814550	214814550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.E957K	1.000	126	0%	139	33.8%	0	-	probably_damaging(0.971)	tolerated(0.07)	deleterious(0.732)	NULL
CENPF	1063	genome.wustl.edu	37	1	214814622	214814622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.E981K	0.997	150	0%	174	27%	3	100%	benign(0.244)	tolerated(0.12)	neutral(0.285)	NULL
CENPF	1063	genome.wustl.edu	37	1	214816194	214816194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.D1505Y	0.003	100	0%	123	23.6%	6	83.3%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
CENPF	1063	genome.wustl.edu	37	1	214816385	214816385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.E1568D	0.022	111	0%	117	19.7%	6	100%	benign(0.001)	tolerated(0.48)	neutral(0.011)	NULL
CENPF	1063	genome.wustl.edu	37	1	214819670	214819670	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016343.3	+1	reviewed	p.E2253*	0.941	282	0%	270	27.4%	14	0%	-	-	-	superfamily_Prefoldin,HMMPfam_Cenp-F_leu_zip
KCNK2	3776	genome.wustl.edu	37	1	215345363	215345363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017425.2	+1	reviewed	p.K220N	1.000	395	0%	377	35.3%	0	-	probably_damaging(0.979)	tolerated(0.09)	deleterious(0.718)	superfamily_Voltage-gated potassium channels
USH2A	7399	genome.wustl.edu	37	1	215844381	215844381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206933.2	-1	reviewed	p.I4689T	0.953	461	0%	387	26.4%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215847561	215847561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206933.2	-1	reviewed	p.N4564K	0.996	441	0%	485	28.5%	0	-	probably_damaging(0.99)	tolerated(0.38)	neutral(0.459)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215914807	215914807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206933.2	-1	reviewed	p.V3874A	0.000	174	0%	174	37.9%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215940060	215940060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206933.2	-1	reviewed	p.E3670D	1.000	221	0%	158	29.7%	0	-	benign(0.046)	tolerated(0.55)	neutral(0.009)	HMMPfam_fn3
USH2A	7399	genome.wustl.edu	37	1	216052350	216052350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206933.2	-1	reviewed	p.T2772A	0.002	265	0%	227	27.8%	0	-	benign(0.059)	tolerated(0.45)	neutral(0.016)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216246482	216246482	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206933.2	-1	reviewed	p.G1911	0.003	156	0%	125	26.4%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
ESRRG	2104	genome.wustl.edu	37	1	216692698	216692698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001438.2	-1	validated	p.I310V	1.000	147	0%	110	24.5%	0	-	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
GPATCH2	55105	genome.wustl.edu	37	1	217793630	217793630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018040.2	-1	provisional	p.E90K	1.000	157	0%	162	32.1%	3	0%	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	NULL
EPRS	2058	genome.wustl.edu	37	1	220192394	220192394	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004446.2	-1	reviewed	p.R459	0.998	382	0%	295	32.2%	29	48.2%	-	-	-	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
RAB3GAP2	25782	genome.wustl.edu	37	1	220379342	220379342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012414.3	-1	reviewed	p.E207K	1.000	93	0%	72	29.2%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RAB3GAP2	25782	genome.wustl.edu	37	1	220387198	220387198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012414.3	-1	reviewed	p.P102S	1.000	61	0%	60	10%	0	-	benign(0)	tolerated(0.98)	-	NULL
HLX	3142	genome.wustl.edu	37	1	221057717	221057717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021958.3	+1	validated	p.D380N	1.000	31	0%	24	33.3%	12	0%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
TAF1A	9015	genome.wustl.edu	37	1	222761887	222761887	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005681.2	-1	reviewed	p.E7*	0.995	383	0.3%	312	29.5%	5	40%	-	-	-	NULL
MIA3	375056	genome.wustl.edu	37	1	222803505	222803505	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000354906	+1	known	p.F564V	0.000	167	0%	232	29.3%	5	0%	-	-	-	NULL
MIA3	375056	genome.wustl.edu	37	1	222805558	222805558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198551.2	+1	validated	p.L1074R	0.000	163	0%	198	29.3%	4	50%	possibly_damaging(0.856)	deleterious(0.01)	deleterious(0.736)	NULL
MIA3	375056	genome.wustl.edu	37	1	222833606	222833606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198551.2	+1	validated	p.R1688K	0.947	182	0%	151	27.2%	19	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AIDA	64853	genome.wustl.edu	37	1	222843305	222843305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022831.2	-1	validated	p.R284I	1.000	235	0%	176	18.2%	14	14.2%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_DUF1855
BROX	148362	genome.wustl.edu	37	1	222892617	222892617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144695.2	+1	validated	p.S74Y	1.000	188	0%	199	13.6%	5	20%	possibly_damaging(0.807)	deleterious(0.03)	deleterious(0.668)	HMMPfam_BRO1
BROX	148362	genome.wustl.edu	37	1	222902986	222902986	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144695.2	+1	validated	p.L261V	0.148	107	0%	103	34%	14	35.7%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_BRO1
TLR5	7100	genome.wustl.edu	37	1	223284179	223284179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003268.5	-1	reviewed	p.R732I	1.000	109	0%	136	29.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
TLR5	7100	genome.wustl.edu	37	1	223285902	223285902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003268.5	-1	reviewed	p.R158C	0.000	189	0%	211	29.9%	0	-	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	HMMPfam_LRR_1,superfamily_SSF52058
SUSD4	55061	genome.wustl.edu	37	1	223402693	223402693	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017982.3	-1	validated	p.F254	1.000	60	0%	54	24.1%	1	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SUSD4	55061	genome.wustl.edu	37	1	223408404	223408404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037175.2	-1	validated	p.P255T	0.000	140	0%	114	32.5%	0	-	unknown(0)	tolerated(0.05)	-	NULL
SUSD4	55061	genome.wustl.edu	37	1	223438013	223438013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017982.3	-1	validated	p.L228R	0.995	119	0%	93	22.6%	2	0%	probably_damaging(0.998)	tolerated(0.34)	deleterious(0.497)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C1orf65	164127	genome.wustl.edu	37	1	223568322	223568322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152610.2	+1	validated	p.R502H	0.001	69	0%	63	36.5%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
TP53BP2	7159	genome.wustl.edu	37	1	223971816	223971816	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031685.2	-1	reviewed	e17+1	1.000	175	0%	155	34.2%	1	100%	-	-	-	-
DEGS1	8560	genome.wustl.edu	37	1	224377745	224377745	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003676.2	+1	reviewed	p.T183	0.007	328	0%	359	31.8%	38	26.3%	-	-	-	HMMPfam_FA_desaturase
WDR26	80232	genome.wustl.edu	37	1	224612384	224612384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000366852	-1	known	p.P206L	1.000	133	0%	104	26.9%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
PYCR2	29920	genome.wustl.edu	37	1	226110080	226110080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013328.2	-1	provisional	p.M48V	1.000	72	0%	50	28%	82	40.2%	benign(0.018)	tolerated(0.05)	neutral(0.346)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
PARP1	142	genome.wustl.edu	37	1	226551739	226551739	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001618.3	-1	reviewed	p.F897	0.993	129	0%	82	26.8%	129	50.3%	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
CDC42BPA	8476	genome.wustl.edu	37	1	227211015	227211015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003607.3	-1	reviewed	p.L1487I	1.000	62	0%	47	21.3%	2	0%	benign(0.136)	tolerated(0.09)	neutral(0.308)	HMMSmart_CNH
CDC42BPA	8476	genome.wustl.edu	37	1	227333226	227333226	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003607.3	-1	reviewed	p.S369	0.480	359	0%	284	35.6%	0	-	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like,HMMPfam_Pkinase_C
CDC42BPA	8476	genome.wustl.edu	37	1	227333349	227333349	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003607.3	-1	reviewed	p.R328	0.977	336	0%	259	30.1%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZNF678	339500	genome.wustl.edu	37	1	227843009	227843009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178549.3	+1	validated	p.E353G	0.594	200	0%	156	25.6%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF678	339500	genome.wustl.edu	37	1	227843393	227843393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178549.3	+1	validated	p.R481I	0.311	207	0.5%	166	34.9%	0	-	benign(0.005)	tolerated(0.18)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PRSS38	339501	genome.wustl.edu	37	1	228004950	228004950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183062.2	+1	validated	p.V118I	0.001	69	0%	45	31.1%	0	-	possibly_damaging(0.775)	tolerated(0.53)	neutral(0.296)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ACTA1	58	genome.wustl.edu	37	1	229567496	229567496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100.3	-1	reviewed	p.A321V	1.000	51	0%	50	30%	1	0%	possibly_damaging(0.495)	deleterious(0)	deleterious(0.610)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ABCB10	23456	genome.wustl.edu	37	1	229676405	229676405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012089.2	-1	reviewed	p.V384A	1.000	215	0%	166	30.7%	5	60%	benign(0.038)	tolerated(0.36)	neutral(0.022)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
URB2	9816	genome.wustl.edu	37	1	229770710	229770710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014777.2	+1	provisional	p.R117I	0.015	50	0%	33	18.2%	4	25%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
AGT	183	genome.wustl.edu	37	1	230841816	230841816	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000029.3	-1	reviewed	p.F329	0.639	173	0%	142	33.8%	9	0%	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CAPN9	10753	genome.wustl.edu	37	1	230895373	230895373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006615.2	+1	reviewed	p.F133L	1.000	149	0%	128	28.9%	1	0%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN9	10753	genome.wustl.edu	37	1	230930952	230930952	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006615.2	+1	reviewed	p.R638	0.996	63	0%	45	31.1%	3	100%	-	-	-	superfamily_EF-hand
TRIM67	440730	genome.wustl.edu	37	1	231342486	231342486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004342.3	+1	validated	p.S590Y	0.672	95	0%	55	32.7%	0	-	possibly_damaging(0.757)	deleterious(0.02)	deleterious(0.663)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TRIM67	440730	genome.wustl.edu	37	1	231344989	231344989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004342.3	+1	validated	p.T706A	1.000	74	0%	61	34.4%	0	-	possibly_damaging(0.676)	tolerated(0.32)	neutral(0.265)	HMMPfam_SPRY,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449
C1orf131	128061	genome.wustl.edu	37	1	231374789	231374789	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152379.2	-1	validated	p.S88	0.017	101	0%	77	27.3%	13	38.4%	-	-	-	NULL
GNPAT	8443	genome.wustl.edu	37	1	231396393	231396393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014236.3	+1	reviewed	p.F134L	0.999	410	0%	476	29.6%	30	26.6%	benign(0.104)	tolerated(0.17)	neutral(0.067)	NULL
GNPAT	8443	genome.wustl.edu	37	1	231402128	231402128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014236.3	+1	reviewed	p.R344W	0.997	74	0%	112	37.5%	46	52.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF69593
EXOC8	149371	genome.wustl.edu	37	1	231471787	231471787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175876.3	-1	validated	p.R569C	1.000	118	0%	108	26.9%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DISC1	27185	genome.wustl.edu	37	1	231829850	231829850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018662.2	+1	reviewed	p.A116T	0.000	60	0%	55	38.2%	1	0%	possibly_damaging(0.527)	tolerated(0.14)	neutral(0.427)	NULL
DISC1	27185	genome.wustl.edu	37	1	231902927	231902927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018662.2	+1	reviewed	p.P437L	0.000	80	0%	97	33%	1	0%	benign(0.011)	tolerated(0.24)	neutral(0.038)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232538167	232538167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020808.3	-1	validated	p.L1665I	1.000	59	0%	47	44.7%	20	85%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232575141	232575141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020808.3	-1	validated	p.M1248I	1.000	59	0%	172	80.2%	11	81.8%	possibly_damaging(0.448)	tolerated(0.09)	neutral(0.443)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232626677	232626677	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020808.3	-1	validated	p.R583	0.536	187	0%	183	34.4%	5	100%	-	-	-	superfamily_Rap/Ran-GAP (Pfam 02145)
SIPA1L2	57568	genome.wustl.edu	37	1	232626724	232626724	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020808.3	-1	validated	p.E568*	1.000	113	0%	116	40.5%	7	0%	-	-	-	superfamily_Rap/Ran-GAP (Pfam 02145)
SIPA1L2	57568	genome.wustl.edu	37	1	232650179	232650179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020808.3	-1	validated	p.E303K	0.996	243	0%	262	13.7%	3	0%	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233136093	233136093	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000429988	-1	known	p.H563N	1.000	125	0%	116	26.7%	1	0%	-	-	-	HMMPfam_Pecanex_C
KIAA1804	84451	genome.wustl.edu	37	1	233498021	233498021	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032435.2	+1	validated	p.R512*	0.999	125	0%	126	26.2%	1	0%	-	-	-	NULL
SLC35F3	148641	genome.wustl.edu	37	1	234444895	234444895	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173508.2	+1	provisional	p.F219L	1.000	105	0%	93	46.2%	0	-	benign(0.145)	tolerated(0.13)	neutral(0.265)	NULL
B3GALNT2	148789	genome.wustl.edu	37	1	235618932	235618932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152490.2	-1	validated	p.E364K	1.000	94	0%	92	28.3%	5	20%	possibly_damaging(0.832)	tolerated(0.11)	deleterious(0.589)	HMMPfam_Galactosyl_T
LYST	1130	genome.wustl.edu	37	1	235907331	235907331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000081.2	-1	reviewed	p.P2700Q	1.000	99	0%	76	32.9%	2	50%	probably_damaging(0.997)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235944236	235944236	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000081.2	-1	reviewed	p.E1715*	1.000	74	0%	58	29.3%	1	0%	-	-	-	NULL
NID1	4811	genome.wustl.edu	37	1	236189263	236189263	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002508.2	-1	reviewed	p.F639	0.958	146	0%	138	36.2%	18	0%	-	-	-	HMMSmart_SM00682,superfamily_GFP-like
NID1	4811	genome.wustl.edu	37	1	236212061	236212061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002508.2	-1	reviewed	p.A152T	0.977	53	0%	48	39.6%	11	0%	benign(0.014)	tolerated(0.43)	neutral(0.014)	HMMSmart_SM00539
GPR137B	7107	genome.wustl.edu	37	1	236341832	236341832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003272.3	+1	validated	p.V195L	1.000	333	0.6%	277	34.7%	11	9%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
ERO1LB	56605	genome.wustl.edu	37	1	236389777	236389777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019891.3	-1	validated	p.E282*	1.000	214	0%	177	28.8%	1	100%	-	-	-	HMMPfam_ERO1,superfamily_ERO1
ERO1LB	56605	genome.wustl.edu	37	1	236413255	236413255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019891.3	-1	validated	p.A121T	1.000	123	0%	117	29.1%	0	-	possibly_damaging(0.822)	tolerated(0.16)	neutral(0.370)	HMMPfam_ERO1,superfamily_ERO1
ERO1LB	56605	genome.wustl.edu	37	1	236433237	236433237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019891.3	-1	validated	p.T54A	1.000	173	0%	187	36.4%	2	50%	possibly_damaging(0.677)	deleterious(0.02)	deleterious(0.624)	superfamily_ERO1
LGALS8	3964	genome.wustl.edu	37	1	236706247	236706247	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006499.3	+1	reviewed	p.I194	0.119	198	0%	161	30.4%	2	50%	-	-	-	NULL
HEATR1	55127	genome.wustl.edu	37	1	236734928	236734928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018072.4	-1	validated	p.L1256I	1.000	203	0%	172	34.9%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
ACTN2	88	genome.wustl.edu	37	1	236900459	236900459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001103.2	+1	reviewed	p.A274V	1.000	61	0%	58	25.9%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	superfamily_Spectrin repeat
MTR	4548	genome.wustl.edu	37	1	237057732	237057732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000254.2	+1	reviewed	p.R1094C	0.005	166	0%	119	25.2%	4	50%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_Met_synt_B12,superfamily_Methionine synthase activation domain-like
RYR2	6262	genome.wustl.edu	37	1	237538020	237538020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.L130M	1.000	32	0%	29	37.9%	0	-	probably_damaging(0.991)	-	-	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
RYR2	6262	genome.wustl.edu	37	1	237659983	237659983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.E712K	1.000	149	0%	122	27.9%	1	100%	benign(0.15)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237664180	237664180	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.V791	0.998	353	0%	403	31.8%	3	100%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237711798	237711798	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.Q992*	1.000	76	0%	52	38.5%	0	-	-	-	-	HMMPfam_RyR
RYR2	6262	genome.wustl.edu	37	1	237791142	237791142	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.R2068*	0.937	49	0%	42	50%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237843758	237843758	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.V2966	0.008	86	0%	78	24.4%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237870347	237870347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.R3227C	0.998	177	0%	164	32.3%	0	-	probably_damaging(1)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237875071	237875071	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.F3419	0.981	45	0%	40	42.5%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237947138	237947138	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035.2	+1	reviewed	p.V4042	1.000	57	0%	58	32.8%	0	-	-	-	-	superfamily_EF-hand
ZP4	57829	genome.wustl.edu	37	1	238049185	238049185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021186.2	-1	reviewed	p.L281F	0.962	126	0%	93	29%	0	-	possibly_damaging(0.584)	deleterious(0.02)	deleterious(0.584)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
FMN2	56776	genome.wustl.edu	37	1	240370340	240370340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020066.4	+1	validated	p.S743L	0.998	110	0%	110	30%	0	-	unknown(0)	deleterious(0)	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240492391	240492391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020066.4	+1	validated	p.E1411K	1.000	173	0%	163	11.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
FMN2	56776	genome.wustl.edu	37	1	240493936	240493936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020066.4	+1	validated	p.L1491I	0.991	142	0%	124	12.9%	0	-	possibly_damaging(0.919)	tolerated(0.14)	deleterious(0.619)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
FMN2	56776	genome.wustl.edu	37	1	240497471	240497471	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020066.4	+1	validated	p.S1569	0.007	488	0%	376	30.9%	0	-	-	-	-	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
GREM2	64388	genome.wustl.edu	37	1	240656276	240656276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022469.3	-1	reviewed	p.K167R	1.000	25	0%	19	31.6%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
FH	2271	genome.wustl.edu	37	1	241667423	241667423	+	Nonsense_Mutation	SNP	G	G	A	rs121913122		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000143.2	-1	reviewed	p.R343*	1.000	161	0%	140	27.9%	68	0%	-	-	-	HMMPfam_Lyase_1,superfamily_L-aspartase-like
KMO	8564	genome.wustl.edu	37	1	241752099	241752099	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000366555	+1	known	p.D41N	0.695	106	0%	100	27%	2	0%	-	-	-	NULL
WDR64	128025	genome.wustl.edu	37	1	241850886	241850886	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144625.4	+1	validated	p.L31	0.964	140	0%	167	29.9%	0	-	-	-	-	superfamily_WD40 repeat-like
WDR64	128025	genome.wustl.edu	37	1	241912991	241912991	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000425826	+1	known	p.P48H	0.929	265	0%	258	29.1%	0	-	-	-	-	superfamily_WD40 repeat-like
PLD5	200150	genome.wustl.edu	37	1	242271077	242271077	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152666.1	-1	provisional	p.R287*	1.000	444	0%	382	26.7%	0	-	-	-	-	HMMPfam_PLD_envelope,superfamily_SSF56024
PLD5	200150	genome.wustl.edu	37	1	242428741	242428741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152666.1	-1	provisional	p.L77I	1.000	142	0%	114	36.8%	0	-	probably_damaging(0.998)	tolerated(0.65)	deleterious(0.477)	superfamily_SSF56024
CEP170	9859	genome.wustl.edu	37	1	243362487	243362487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014812.2	-1	reviewed	p.A169V	0.997	66	0%	49	28.6%	1	0%	possibly_damaging(0.848)	tolerated(0.37)	neutral(0.345)	NULL
ZNF238	10472	genome.wustl.edu	37	1	244217802	244217802	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205768.2	+1	validated	p.S242	0.964	129	0%	153	25.5%	4	0%	-	-	-	NULL
ZNF238	10472	genome.wustl.edu	37	1	244218009	244218009	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205768.2	+1	validated	p.S311	1.000	80	0%	87	35.6%	6	33.3%	-	-	-	NULL
ADSS	159	genome.wustl.edu	37	1	244583524	244583524	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001126.2	-1	reviewed	p.P246	0.997	109	0%	78	25.6%	10	30%	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
C1orf101	257044	genome.wustl.edu	37	1	244735751	244735751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130957.1	+1	validated	p.F543L	0.000	154	0%	107	31.8%	0	-	benign(0)	tolerated(1)	-	NULL
C1orf101	257044	genome.wustl.edu	37	1	244735828	244735828	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130957.1	+1	validated	p.L568	0.268	201	0.5%	128	35.9%	0	-	-	-	-	NULL
PPPDE1	51029	genome.wustl.edu	37	1	244849911	244849911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016076.3	+1	validated	p.E19K	1.000	75	0%	51	21.6%	8	12.5%	benign(0.362)	tolerated(0.23)	neutral(0.157)	HMMPfam_DUF862
HNRNPU	3192	genome.wustl.edu	37	1	245019366	245019366	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031844.2	-1	reviewed	p.Y669	1.000	252	0%	248	27.8%	292	46.5%	-	-	-	NULL
ZNF695	57116	genome.wustl.edu	37	1	247150534	247150534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020394.3	-1	validated	p.R428I	1.000	248	0%	229	32.8%	1	0%	benign(0.044)	tolerated(0.33)	neutral(0.026)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NLRP3	114548	genome.wustl.edu	37	1	247582186	247582186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079821.2	+1	reviewed	p.E30D	0.915	42	0%	55	29.1%	0	-	possibly_damaging(0.574)	tolerated(0.13)	neutral(0.450)	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
NLRP3	114548	genome.wustl.edu	37	1	247582274	247582274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079821.2	+1	reviewed	p.D60N	0.458	56	0%	77	26%	0	-	probably_damaging(0.959)	tolerated(0.4)	neutral(0.419)	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
OR2B11	127623	genome.wustl.edu	37	1	247614342	247614342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004492.1	-1	provisional	p.L315F	0.000	694	0%	639	26.6%	0	-	possibly_damaging(0.45)	tolerated(0.08)	neutral(0.448)	NULL
C1orf150	148823	genome.wustl.edu	37	1	247712513	247712513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145278.3	+1	provisional	p.R7Q	0.001	81	0%	58	43.1%	0	-	possibly_damaging(0.852)	-	-	NULL
OR2G2	81470	genome.wustl.edu	37	1	247752208	247752208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001915.1	+1	provisional	p.E183K	1.000	324	0%	382	29.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
OR2G3	81469	genome.wustl.edu	37	1	247769796	247769796	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001914.1	+1	provisional	p.K303N	0.055	196	0%	165	30.9%	0	-	possibly_damaging(0.492)	tolerated(0.23)	neutral(0.206)	superfamily_Family A G protein-coupled receptor-like
OR1C1	26188	genome.wustl.edu	37	1	247921073	247921073	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012353.2	-1	validated	p.V212	0.090	122	0%	135	23%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR11L1	391189	genome.wustl.edu	37	1	248005120	248005120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001959.1	-1	provisional	p.L27F	0.961	94	0%	106	29.2%	0	-	possibly_damaging(0.854)	tolerated(0.1)	deleterious(0.615)	superfamily_SSF81321
OR2L13	284521	genome.wustl.edu	37	1	248263598	248263598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175911.2	+1	provisional	p.F307L	0.000	105	0%	116	21.6%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
OR2M3	127062	genome.wustl.edu	37	1	248366449	248366449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004689.1	+1	provisional	p.L27P	0.028	753	0%	731	29.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Family A G protein-coupled receptor-like
OR2M4	26245	genome.wustl.edu	37	1	248403107	248403107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017504.1	+1	provisional	p.R293C	0.000	172	0%	144	25%	0	-	benign(0.233)	deleterious(0.01)	neutral(0.429)	superfamily_SSF81321
OR2T33	391195	genome.wustl.edu	37	1	248436341	248436341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004695.1	-1	provisional	p.R259I	0.000	294	0%	295	29.2%	0	-	possibly_damaging(0.951)	tolerated(0.36)	neutral(0.414)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T12	127064	genome.wustl.edu	37	1	248458302	248458302	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004692.1	-1	provisional	p.F193	0.001	107	0%	119	21%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512190	248512190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001918.1	+1	provisional	p.M38I	0.008	313	0%	184	21.2%	0	-	possibly_damaging(0.452)	tolerated(0.31)	neutral(0.175)	superfamily_SSF81321
OR2T4	127074	genome.wustl.edu	37	1	248525908	248525908	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004696.1	+1	provisional	p.A342	0.000	274	0%	207	29%	0	-	-	-	-	NULL
OR2T6	254879	genome.wustl.edu	37	1	248551552	248551552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005471.1	+1	provisional	p.T215A	0.000	96	0%	90	28.9%	0	-	benign(0.01)	tolerated(0.31)	neutral(0.028)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T1	26696	genome.wustl.edu	37	1	248569526	248569526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030904.1	+1	provisional	p.I77M	0.759	249	0%	177	40.7%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	superfamily_SSF81321
OR2T1	26696	genome.wustl.edu	37	1	248570400	248570400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030904.1	+1	provisional	p.F369V	0.001	116	0%	70	48.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
OR2T2	401992	genome.wustl.edu	37	1	248616110	248616110	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004136.1	+1	provisional	p.E4	0.002	336	0%	284	20.1%	0	-	-	-	-	NULL
OR2T3	343173	genome.wustl.edu	37	1	248637506	248637506	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005495.1	+1	provisional	p.I285	0.000	897	0%	748	17.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T5	401993	genome.wustl.edu	37	1	248651994	248651994	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004697.1	+1	provisional	p.I35	0.023	575	0.2%	454	16.7%	0	-	-	-	-	superfamily_SSF81321
OR2G6	391211	genome.wustl.edu	37	1	248685338	248685338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013355.1	+1	validated	p.R131C	0.991	126	0%	153	13.1%	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2G6	391211	genome.wustl.edu	37	1	248685523	248685523	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013355.1	+1	validated	p.T192	0.018	192	0%	211	28.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T10	127069	genome.wustl.edu	37	1	248756887	248756887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004693.1	-1	provisional	p.F61L	0.626	140	0%	186	22%	0	-	benign(0.092)	tolerated(0.14)	neutral(0.257)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF672	79894	genome.wustl.edu	37	1	249142607	249142607	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024836.1	+1	provisional	p.V378	0.001	45	0%	39	35.9%	44	31.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PGBD2	267002	genome.wustl.edu	37	1	249211948	249211948	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170725.2	+1	validated	p.E389*	0.979	228	0.4%	217	30.9%	2	100%	-	-	-	NULL
TMEM18	129787	genome.wustl.edu	37	2	669842	669842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152834.2	-1	validated	p.S81L	0.998	68	0%	48	29.2%	48	45.8%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
SNTG2	54221	genome.wustl.edu	37	2	1093905	1093905	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018968.3	+1	reviewed	p.R78	1.000	247	0%	210	26.2%	0	-	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
TPO	7173	genome.wustl.edu	37	2	1418270	1418270	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000547.5	+1	reviewed	p.L30	0.000	24	0%	24	16.7%	0	-	-	-	-	NULL
PXDN	7837	genome.wustl.edu	37	2	1691435	1691435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012293.1	-1	validated	p.A129T	1.000	32	0%	12	41.7%	1	0%	benign(0.229)	tolerated(0.08)	neutral(0.323)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
MYT1L	23040	genome.wustl.edu	37	2	1926268	1926268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015025.2	-1	validated	p.D425N	1.000	115	0%	104	26.9%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
MYT1L	23040	genome.wustl.edu	37	2	1926428	1926428	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015025.2	-1	validated	p.T371	0.912	77	0%	73	31.5%	0	-	-	-	-	NULL
RNASEH1	246243	genome.wustl.edu	37	2	3599890	3599890	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002936.3	-1	validated	p.N85H	0.037	90	0%	101	30.7%	29	48.2%	possibly_damaging(0.654)	tolerated(0.12)	deleterious(0.491)	NULL
COLEC11	78989	genome.wustl.edu	37	2	3691534	3691534	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024027.3	+1	validated	p.F214	1.000	29	0%	26	26.9%	5	80%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
RSAD2	91543	genome.wustl.edu	37	2	7023644	7023644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080657.4	+1	validated	p.E163D	0.946	67	0%	54	27.8%	0	-	benign(0.017)	deleterious(0.04)	neutral(0.349)	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114
RNF144A	9781	genome.wustl.edu	37	2	7154890	7154890	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000432850	+1	known	p.Y92C	0.998	68	0%	52	28.8%	4	0%	-	-	-	HMMPfam_IBR,HMMSmart_SM00647
KIDINS220	57498	genome.wustl.edu	37	2	8871069	8871069	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020738.2	-1	validated	p.F1699	0.033	102	0%	90	34.4%	35	57.1%	-	-	-	NULL
KIDINS220	57498	genome.wustl.edu	37	2	8891731	8891731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020738.2	-1	validated	p.L1019I	1.000	113	0%	99	27.3%	7	28.5%	probably_damaging(0.961)	tolerated(0.06)	deleterious(0.727)	NULL
MBOAT2	129642	genome.wustl.edu	37	2	9017115	9017115	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000474341	-1	known	NULL	0.000	96	0%	79	43%	1	0%	-	-	-	-
ASAP2	8853	genome.wustl.edu	37	2	9419459	9419459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003887.2	+1	reviewed	p.D47G	1.000	130	0%	112	25%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ASAP2	8853	genome.wustl.edu	37	2	9496336	9496336	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003887.2	+1	reviewed	p.E397*	1.000	164	0%	140	35.7%	9	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ASAP2	8853	genome.wustl.edu	37	2	9496450	9496450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003887.2	+1	reviewed	p.V435I	0.935	72	0%	69	36.2%	9	55.5%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
IAH1	285148	genome.wustl.edu	37	2	9621568	9621568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039613.1	+1	provisional	p.I146S	0.010	67	0%	67	29.9%	60	36.6%	benign(0.174)	tolerated(0.39)	neutral(0.032)	HMMPfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type
ADAM17	6868	genome.wustl.edu	37	2	9633917	9633917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003183.4	-1	reviewed	p.R651Q	1.000	125	0%	108	29.6%	19	21%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ADAM17	6868	genome.wustl.edu	37	2	9668046	9668046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003183.4	-1	reviewed	p.R163I	1.000	99	0%	75	41.3%	1	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
TAF1B	9014	genome.wustl.edu	37	2	10016042	10016042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005680.2	+1	reviewed	p.R201Q	0.041	317	0%	301	31.9%	5	20%	benign(0.076)	tolerated(0.11)	neutral(0.277)	NULL
ODC1	4953	genome.wustl.edu	37	2	10583902	10583902	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002539.1	-1	reviewed	p.F170	1.000	135	0%	136	32.4%	312	47.7%	-	-	-	HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel
GREB1	9687	genome.wustl.edu	37	2	11716519	11716519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014668.3	+1	reviewed	p.F165L	1.000	152	0%	160	31.9%	1	100%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
GREB1	9687	genome.wustl.edu	37	2	11728910	11728910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014668.3	+1	reviewed	p.D400Y	1.000	95	0%	74	33.8%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
LPIN1	23175	genome.wustl.edu	37	2	11959611	11959611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145693.1	+1	reviewed	p.E766K	1.000	284	0%	202	24.3%	9	22.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784
TRIB2	28951	genome.wustl.edu	37	2	12858460	12858460	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021643.3	+1	reviewed	p.I9	1.000	53	0%	59	30.5%	27	18.5%	-	-	-	NULL
DDX1	1653	genome.wustl.edu	37	2	15736871	15736871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004939.1	+1	reviewed	p.G49E	1.000	206	0%	159	23.3%	36	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD51AP2	729475	genome.wustl.edu	37	2	17695303	17695303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099218.2	-1	provisional	p.E1102*	0.882	98	0%	73	27.4%	0	-	-	-	-	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17696783	17696783	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099218.2	-1	provisional	p.K967T	1.000	163	0%	121	13.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17697825	17697825	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099218.2	-1	provisional	p.N620H	0.169	56	0%	62	35.5%	0	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
SMC6	79677	genome.wustl.edu	37	2	17896261	17896261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142286.1	-1	validated	p.A533T	0.997	484	0.2%	340	25.9%	8	25%	possibly_damaging(0.704)	tolerated(0.19)	neutral(0.303)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNS3	3790	genome.wustl.edu	37	2	18112795	18112795	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002252.3	+1	reviewed	p.R174	0.001	211	0%	224	33%	1	0%	-	-	-	NULL
NT5C1B	93034	genome.wustl.edu	37	2	18768783	18768783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002006.1	-1	validated	p.R36C	0.186	303	0%	189	29.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
APOB	338	genome.wustl.edu	37	2	21229215	21229215	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000384.2	-1	reviewed	p.Y3509D	0.993	173	0%	173	30.6%	0	-	probably_damaging(1)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21230434	21230434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000384.2	-1	reviewed	p.F3102L	0.998	263	0%	239	35.1%	0	-	probably_damaging(0.982)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21230968	21230968	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000384.2	-1	reviewed	p.S2924	0.864	376	0%	353	32%	0	-	-	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21234054	21234054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000384.2	-1	reviewed	p.F1896I	0.017	356	0%	338	36.1%	0	-	probably_damaging(0.958)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21256201	21256201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000384.2	-1	reviewed	p.S365Y	0.150	257	0%	266	28.2%	0	-	probably_damaging(0.999)	-	-	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain
ATAD2B	54454	genome.wustl.edu	37	2	24046307	24046307	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017552.1	-1	validated	p.Q651P	0.753	103	0%	80	20%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	superfamily_P-loop containing nucleoside triphosphate hydrolases
UBXN2A	165324	genome.wustl.edu	37	2	24207600	24207600	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181713.3	+1	validated	p.N161K	0.009	137	0%	118	36.4%	13	53.8%	benign(0)	tolerated(0.89)	-	superfamily_SSF54236
TP53I3	9540	genome.wustl.edu	37	2	24307063	24307063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004881.2	-1	reviewed	p.M45T	0.369	39	0%	38	36.8%	44	50%	benign(0.029)	deleterious(0)	neutral(0.446)	superfamily_GroES-like,HMMPfam_ADH_N
PFN4	375189	genome.wustl.edu	37	2	24344080	24344080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199346.1	-1	provisional	p.D70Y	1.000	241	0%	163	21.5%	2	0%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Profilin,HMMSmart_SM00392,superfamily_Profilin (actin-binding protein)
ITSN2	50618	genome.wustl.edu	37	2	24426614	24426614	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006277.2	-1	reviewed	p.R1659*	1.000	113	0%	91	24.2%	6	50%	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ITSN2	50618	genome.wustl.edu	37	2	24509131	24509131	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006277.2	-1	reviewed	p.E605*	1.000	148	0%	112	34.8%	3	0%	-	-	-	NULL
ITSN2	50618	genome.wustl.edu	37	2	24524861	24524861	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006277.2	-1	reviewed	p.P323fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00027,superfamily_EF-hand
NCOA1	8648	genome.wustl.edu	37	2	24888650	24888650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003743.4	+1	reviewed	p.K41T	1.000	106	0%	107	29%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
NCOA1	8648	genome.wustl.edu	37	2	24930610	24930610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003743.4	+1	reviewed	p.E757D	1.000	183	0%	207	42%	3	33.3%	probably_damaging(0.994)	tolerated(1)	neutral(0.452)	NULL
NCOA1	8648	genome.wustl.edu	37	2	24951184	24951184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003743.4	+1	reviewed	p.I909L	1.000	127	0%	101	22.8%	12	33.3%	benign(0.061)	tolerated(0.83)	neutral(0.005)	NULL
POMC	5443	genome.wustl.edu	37	2	25384246	25384246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000939.2	-1	reviewed	p.E170K	1.000	19	0%	21	38.1%	1	0%	benign(0.014)	deleterious(0.01)	neutral(0.406)	HMMPfam_ACTH_domain
DNMT3A	1788	genome.wustl.edu	37	2	25463270	25463270	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022552.3	-1	reviewed	p.A741	0.998	93	0%	82	34.1%	14	42.8%	-	-	-	HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DTNB	1838	genome.wustl.edu	37	2	25851158	25851158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021907.3	-1	reviewed	p.E82K	1.000	79	0%	71	42.3%	11	63.6%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_efhand_1,superfamily_EF-hand
ASXL2	55252	genome.wustl.edu	37	2	25966396	25966396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018263.4	-1	validated	p.G937E	0.999	302	0%	281	31.3%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR113	165082	genome.wustl.edu	37	2	26534793	26534793	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145168.1	-1	validated	p.F601	0.289	50	0%	51	19.6%	0	-	-	-	-	NULL
CCDC164	92749	genome.wustl.edu	37	2	26671587	26671587	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145038.2	+1	validated	p.A475	0.000	64	0%	53	39.6%	0	-	-	-	-	NULL
OTOF	9381	genome.wustl.edu	37	2	26688692	26688692	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194248.2	-1	reviewed	p.A1549	1.000	49	0%	54	11.1%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CIB4	130106	genome.wustl.edu	37	2	26818053	26818053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029881.1	-1	provisional	p.R107C	1.000	86	0%	88	28.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
AGBL5	60509	genome.wustl.edu	37	2	27276329	27276329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021831.5	+1	validated	p.I92S	1.000	121	0%	108	31.5%	28	64.2%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
AGBL5	60509	genome.wustl.edu	37	2	27278836	27278836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021831.5	+1	validated	p.L399F	0.018	165	0%	165	31.5%	32	50%	benign(0.003)	tolerated(0.16)	neutral(0.059)	superfamily_Zn-dependent exopeptidases
EMILIN1	11117	genome.wustl.edu	37	2	27306779	27306779	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000433140	+1	known	p.S106L	0.211	12	0%	14	42.9%	107	0%	-	-	-	NULL
PREB	10113	genome.wustl.edu	37	2	27354655	27354655	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000456259	-1	known	p.C92R	0.982	196	0%	161	24.2%	67	44.7%	-	-	-	superfamily_WD40 repeat-like
PREB	10113	genome.wustl.edu	37	2	27356559	27356559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013388.4	-1	reviewed	p.R56C	0.973	47	0%	27	18.5%	32	43.7%	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
SLC5A6	8884	genome.wustl.edu	37	2	27426157	27426157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021095.2	-1	validated	p.R384Q	1.000	240	0%	220	32.7%	35	62.8%	benign(0.013)	tolerated(0.13)	neutral(0.253)	HMMPfam_SSF
DNAJC5G	285126	genome.wustl.edu	37	2	27500695	27500695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173650.1	+1	provisional	p.D63N	1.000	110	0%	91	40.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
GTF3C2	2976	genome.wustl.edu	37	2	27551331	27551331	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000415683	-1	known	p.Y155	0.985	211	0%	241	28.2%	2	0%	unknown(0)	tolerated(0.07)	-	superfamily_WD40 repeat-like
EIF2B4	8890	genome.wustl.edu	37	2	27591956	27591956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172195.3	-1	reviewed	p.R132Q	1.000	143	0%	161	32.9%	42	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
IFT172	26160	genome.wustl.edu	37	2	27670410	27670410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015662.1	-1	validated	p.R1544H	1.000	190	0%	196	33.7%	22	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IFT172	26160	genome.wustl.edu	37	2	27699521	27699521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015662.1	-1	validated	p.K466N	1.000	272	0%	209	32.5%	3	0%	possibly_damaging(0.76)	deleterious(0.04)	deleterious(0.630)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
C2orf16	84226	genome.wustl.edu	37	2	27799476	27799476	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032266.3	+1	validated	p.N13H	0.003	83	0%	106	32.1%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27800640	27800640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032266.3	+1	validated	p.E401*	0.088	113	0%	170	23.5%	0	-	-	-	-	NULL
C2orf16	84226	genome.wustl.edu	37	2	27803796	27803796	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032266.3	+1	validated	p.R1453*	0.003	228	0%	216	29.6%	2	100%	-	-	-	NULL
C2orf16	84226	genome.wustl.edu	37	2	27805240	27805240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032266.3	+1	validated	p.R1934H	0.000	179	0.6%	180	31.1%	0	-	unknown(0)	deleterious(0.01)	-	NULL
ZNF512	84450	genome.wustl.edu	37	2	27821023	27821023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032434.2	+1	validated	p.S60L	0.986	206	0%	176	29.5%	4	100%	possibly_damaging(0.832)	tolerated(0.1)	deleterious(0.603)	NULL
ZNF512	84450	genome.wustl.edu	37	2	27825385	27825385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032434.2	+1	validated	p.R242Q	1.000	138	0%	131	29.8%	7	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZNF512	84450	genome.wustl.edu	37	2	27844109	27844109	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032434.2	+1	validated	p.R495	1.000	185	0%	175	33.7%	9	33.3%	-	-	-	NULL
PLB1	151056	genome.wustl.edu	37	2	28752630	28752630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153021.4	+1	validated	p.N151S	0.024	73	0%	84	39.3%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
TRMT61B	55006	genome.wustl.edu	37	2	29092451	29092451	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017910.3	-1	validated	p.F231	0.046	461	0%	387	31.3%	7	42.8%	-	-	-	HMMPfam_GCD14,superfamily_SSF53335
TRMT61B	55006	genome.wustl.edu	37	2	29092644	29092644	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017910.3	-1	validated	p.K167T	0.000	183	0%	187	34.8%	3	33.3%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_GCD14,superfamily_SSF53335
WDR43	23160	genome.wustl.edu	37	2	29152559	29152559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015131.1	+1	validated	p.D474N	1.000	191	0%	140	27.9%	24	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
FAM179A	165186	genome.wustl.edu	37	2	29237302	29237302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199280.2	+1	validated	p.A307T	0.000	70	0%	62	38.7%	1	100%	benign(0.14)	tolerated(0.11)	neutral(0.284)	NULL
C2orf71	388939	genome.wustl.edu	37	2	29294133	29294133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029883.1	-1	provisional	p.T999A	0.207	30	0%	20	45%	0	-	benign(0.007)	tolerated(1)	-	NULL
LCLAT1	253558	genome.wustl.edu	37	2	30790941	30790941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182551.3	+1	validated	p.R214Q	0.995	188	0%	107	22.4%	7	71.4%	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	HMMPfam_Acyltransferase,HMMSmart_SM00563
CAPN13	92291	genome.wustl.edu	37	2	30964804	30964804	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000450650	-1	known	p.N66S	0.000	115	0%	88	33%	0	-	-	-	-	NULL
EHD3	30845	genome.wustl.edu	37	2	31457522	31457522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014600.2	+1	validated	p.R12M	1.000	37	0%	21	47.6%	1	0%	benign(0.026)	deleterious(0.01)	neutral(0.407)	NULL
EHD3	30845	genome.wustl.edu	37	2	31457533	31457533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014600.2	+1	validated	p.E16K	1.000	42	0%	29	27.6%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
EHD3	30845	genome.wustl.edu	37	2	31489265	31489265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014600.2	+1	validated	p.D435N	1.000	61	0%	41	26.8%	1	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	superfamily_EF-hand
XDH	7498	genome.wustl.edu	37	2	31600092	31600092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000379.3	-1	reviewed	p.F418L	1.000	133	0%	100	19%	2	0%	benign(0.038)	tolerated(0.1)	neutral(0.288)	superfamily_CO_deh_flav_C
SRD5A2	6716	genome.wustl.edu	37	2	31754438	31754438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000233139	-1	known	p.A212T	0.864	245	0%	212	35.8%	0	-	-	-	-	HMMPfam_Steroid_dh
MEMO1	51072	genome.wustl.edu	37	2	32117134	32117134	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000422936	-1	known	p.S51L	1.000	336	0%	284	39.1%	15	6.6%	-	-	-	HMMPfam_Memo
DPY30	84661	genome.wustl.edu	37	2	32264386	32264386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032574.2	-1	validated	p.N16H	1.000	157	0%	147	12.2%	123	18.6%	possibly_damaging(0.873)	deleterious(0.03)	deleterious(0.704)	NULL
SPAST	6683	genome.wustl.edu	37	2	32361680	32361680	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014946.3	+1	reviewed	p.E432*	1.000	255	0%	284	25.7%	3	0%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRC4	58484	genome.wustl.edu	37	2	32475828	32475828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000360906	-1	known	p.L369M	0.278	190	0%	119	27.7%	0	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	NULL
NLRC4	58484	genome.wustl.edu	37	2	32476016	32476016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000360906	-1	known	p.Q306R	0.098	162	0%	170	29.4%	1	100%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
YIPF4	84272	genome.wustl.edu	37	2	32515564	32515564	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032312.3	+1	validated	p.S31*	1.000	118	0%	84	32.1%	9	11.1%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32640968	32640968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016252.3	+1	reviewed	p.R870Q	1.000	205	0%	202	31.7%	0	-	probably_damaging(0.987)	tolerated(0.25)	deleterious(0.473)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32704682	32704682	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016252.3	+1	reviewed	p.T2469P	1.000	55	0%	57	26.3%	2	50%	benign(0.039)	tolerated(0.08)	neutral(0.302)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32724695	32724695	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016252.3	+1	reviewed	p.V2850	0.876	96	0%	112	31.2%	0	-	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32735648	32735648	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016252.3	+1	reviewed	p.T3431	0.110	403	0%	301	28.9%	8	25%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32740507	32740507	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016252.3	+1	reviewed	p.C3673	0.153	96	0%	98	32.7%	9	88.8%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32740650	32740650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016252.3	+1	reviewed	p.H3721R	1.000	153	0%	121	26.4%	9	33.3%	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32774544	32774544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016252.3	+1	reviewed	p.D4380E	0.997	148	0%	109	28.4%	11	45.4%	possibly_damaging(0.689)	deleterious(0)	deleterious(0.691)	NULL
LTBP1	4052	genome.wustl.edu	37	2	33623458	33623458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206943.2	+1	reviewed	p.N1672S	0.997	173	0%	125	24%	63	34.9%	benign(0.003)	tolerated(0.29)	neutral(0.029)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
ENSG00000181250	0	genome.wustl.edu	37	2	33952572	33952572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000322472	-1	known	p.Y91D	1.000	46	0%	39	35.9%	0	-	-	-	-	HMMPfam_MARVEL
CRIM1	51232	genome.wustl.edu	37	2	36623862	36623862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016441.1	+1	provisional	p.R146Q	1.000	167	0%	190	28.9%	13	23%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
VIT	5212	genome.wustl.edu	37	2	37036099	37036099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053276.3	+1	validated	p.R625Q	0.997	43	0%	50	10%	0	-	possibly_damaging(0.87)	tolerated(0.22)	neutral(0.380)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
HEATR5B	54497	genome.wustl.edu	37	2	37286077	37286077	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019024.1	-1	validated	p.R635*	1.000	82	0%	64	21.9%	0	-	-	-	-	superfamily_ARM repeat
HEATR5B	54497	genome.wustl.edu	37	2	37292013	37292013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019024.1	-1	validated	p.D485G	1.000	129	0%	131	38.2%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_ARM repeat
CEBPZ	10153	genome.wustl.edu	37	2	37449554	37449554	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005760.2	-1	validated	p.V678	0.275	290	0%	284	36.6%	15	40%	-	-	-	HMMPfam_CBF,superfamily_ARM repeat
PRKD3	23683	genome.wustl.edu	37	2	37520341	37520341	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005813.3	-1	reviewed	p.I121S	1.000	254	0%	208	28.4%	2	100%	benign(0.103)	deleterious(0)	neutral(0.453)	NULL
QPCT	25797	genome.wustl.edu	37	2	37594509	37594509	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012413.3	+1	reviewed	p.P227	0.003	212	0.5%	222	30.6%	6	0%	-	-	-	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
CDC42EP3	10602	genome.wustl.edu	37	2	37873097	37873097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006449.3	-1	reviewed	p.E212K	0.689	124	0%	89	33.7%	18	50%	benign(0.048)	deleterious(0.02)	neutral(0.386)	NULL
LOC344382	344382	genome.wustl.edu	37	2	38044521	38044521	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_293026.6	+1	model	p.K155T	0.997	165	0%	113	29.2%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
SOS1	6654	genome.wustl.edu	37	2	39249815	39249815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005633.3	-1	reviewed	p.N585T	1.000	168	0%	123	30.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ras GEF
MAP4K3	8491	genome.wustl.edu	37	2	39477794	39477794	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000437545	-1	known	p.F850S	0.999	77	0%	73	20.5%	15	33.3%	-	-	-	NULL
SLC8A1	6546	genome.wustl.edu	37	2	40655918	40655918	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021097.2	-1	validated	p.S501	0.051	126	0%	111	27.9%	2	0%	-	-	-	NULL
EML4	27436	genome.wustl.edu	37	2	42515438	42515438	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019063.3	+1	validated	p.K398	0.999	134	0%	143	30.1%	10	20%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
HAAO	23498	genome.wustl.edu	37	2	42995063	42995063	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012205.2	-1	reviewed	p.I212	0.000	78	0%	75	29.3%	3	0%	-	-	-	superfamily_RmlC-like cupins
THADA	63892	genome.wustl.edu	37	2	43776470	43776470	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083953.1	-1	validated	p.I995	0.998	37	0%	35	31.4%	2	0%	-	-	-	HMMPfam_DUF2428
THADA	63892	genome.wustl.edu	37	2	43814117	43814117	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083953.1	-1	validated	p.F109L	0.018	158	0%	197	36%	2	0%	benign(0.014)	tolerated(0.95)	neutral(0.001)	NULL
LOC728819	728819	genome.wustl.edu	37	2	43903162	43903162	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001101330.1	-1	provisional	p.L100	0.220	324	0%	264	12.5%	0	-	-	-	-	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43921627	43921627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172069.3	+1	validated	p.E132*	1.000	200	0.5%	185	27.6%	0	-	-	-	-	NULL
LRPPRC	10128	genome.wustl.edu	37	2	44187771	44187771	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133259.3	-1	reviewed	p.E497D	1.000	170	0%	119	26.9%	22	63.6%	probably_damaging(0.998)	tolerated(0.51)	deleterious(0.483)	NULL
PREPL	9581	genome.wustl.edu	37	2	44586756	44586756	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006036.4	-1	reviewed	p.F33	0.967	259	0%	206	27.7%	3	100%	-	-	-	NULL
CAMKMT	79823	genome.wustl.edu	37	2	44970791	44970791	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024766.3	+1	validated	p.V218	1.000	99	0%	72	29.2%	16	6.2%	-	-	-	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SRBD1	55133	genome.wustl.edu	37	2	45826598	45826598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018079.4	-1	validated	p.D213G	1.000	611	0%	686	28.1%	3	33.3%	possibly_damaging(0.949)	tolerated(0.15)	deleterious(0.634)	NULL
ATP6V1E2	90423	genome.wustl.edu	37	2	46739186	46739186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080653.3	-1	validated	p.R222I	1.000	147	0%	140	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTC7A	57217	genome.wustl.edu	37	2	47300973	47300973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020458.2	+1	validated	p.E830K	0.996	25	0%	20	50%	28	17.8%	possibly_damaging(0.49)	tolerated(0.07)	deleterious(0.482)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
EPCAM	4072	genome.wustl.edu	37	2	47604182	47604182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002354.2	+1	reviewed	p.Y174C	0.987	95	0%	79	26.6%	806	45.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MSH2	4436	genome.wustl.edu	37	2	47710069	47710069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000251.1	+1	reviewed	p.R929Q	0.989	46	0%	57	33.3%	34	38.2%	probably_damaging(0.959)	tolerated(0.23)	neutral(0.444)	NULL
MSH6	2956	genome.wustl.edu	37	2	48026567	48026567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000179.2	+1	reviewed	p.R482Q	1.000	187	0%	241	29.9%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MutS_I,superfamily_DNA repair protein MutS domain I
MSH6	2956	genome.wustl.edu	37	2	48028001	48028001	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000179.2	+1	reviewed	p.N960T	0.984	252	0%	256	16.4%	29	13.7%	benign(0.008)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III,HMMPfam_MutS_IV
MSH6	2956	genome.wustl.edu	37	2	48030686	48030686	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000179.2	+1	reviewed	p.T1100	0.559	346	0%	306	34.3%	71	36.6%	-	-	-	HMMPfam_MutS_V,HMMSmart_SM00533,superfamily_P-loop containing nucleoside triphosphate hydrolases
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48809500	48809500	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172311.1	+1	reviewed	p.S576	0.000	150	0%	153	26.1%	0	-	-	-	-	HMMPfam_Adap_comp_sub,superfamily_AP50
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48873710	48873710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172311.1	+1	reviewed	p.Q873H	0.275	225	0.4%	128	18%	1	0%	possibly_damaging(0.496)	tolerated(0.06)	deleterious(0.488)	HMMPfam_TFIIA
LHCGR	3973	genome.wustl.edu	37	2	48915014	48915014	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000233.3	-1	reviewed	p.F641C	1.000	515	0%	487	33.9%	0	-	possibly_damaging(0.502)	tolerated(0.19)	neutral(0.217)	superfamily_Family A G protein-coupled receptor-like
GTF2A1L	11036	genome.wustl.edu	37	2	48960042	48960042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172196.1	+1	reviewed	p.R447I	0.000	405	0%	302	10.3%	0	-	benign(0.006)	tolerated(0.14)	neutral(0.249)	HMMPfam_TFIIA
FSHR	2492	genome.wustl.edu	37	2	49189898	49189898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000145.3	-1	reviewed	p.P688S	1.000	185	0%	126	29.4%	0	-	possibly_damaging(0.773)	deleterious(0.03)	deleterious(0.652)	NULL
FSHR	2492	genome.wustl.edu	37	2	49190009	49190009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000145.3	-1	reviewed	p.A651T	1.000	139	0%	106	34%	0	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	superfamily_Family A G protein-coupled receptor-like
FSHR	2492	genome.wustl.edu	37	2	49216149	49216149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000145.3	-1	reviewed	p.S164Y	1.000	171	0%	180	26.7%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_L domain-like
NRXN1	9378	genome.wustl.edu	37	2	50318556	50318556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135659.1	-1	reviewed	p.N1248T	1.000	154	0%	141	31.9%	0	-	possibly_damaging(0.452)	deleterious(0.01)	deleterious(0.553)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	51149007	51149007	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135659.1	-1	reviewed	p.G311*	1.000	85	0%	78	34.6%	0	-	-	-	-	superfamily_ConA_like_lec_gl
ASB3	51130	genome.wustl.edu	37	2	53943731	53943731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016115.3	-1	reviewed	p.H252Y	1.000	408	0%	317	28.1%	6	66.6%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ASB3	51130	genome.wustl.edu	37	2	53977996	53977996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016115.3	-1	reviewed	p.K93N	0.984	174	0%	169	24.9%	8	62.5%	benign(0.013)	tolerated(0.17)	neutral(0.059)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PSME4	23198	genome.wustl.edu	37	2	54114472	54114472	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014614.2	-1	validated	p.I1551M	1.000	256	0%	241	30.3%	20	60%	possibly_damaging(0.911)	tolerated(0.21)	neutral(0.407)	superfamily_ARM repeat
SPTBN1	6711	genome.wustl.edu	37	2	54858699	54858699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003128.2	+1	reviewed	p.Q1172R	1.000	136	0%	87	27.6%	27	25.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
RTN4	57142	genome.wustl.edu	37	2	55253096	55253096	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020532.4	-1	reviewed	p.P713	0.995	219	0%	217	27.2%	1	100%	-	-	-	NULL
RTN4	57142	genome.wustl.edu	37	2	55253208	55253208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020532.4	-1	reviewed	p.E676A	0.928	175	0%	194	29.9%	2	50%	possibly_damaging(0.675)	tolerated(0.65)	neutral(0.242)	NULL
C2orf63	130162	genome.wustl.edu	37	2	55403096	55403096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152385.2	-1	validated	p.D531Y	0.955	124	0%	158	36.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C2orf63	130162	genome.wustl.edu	37	2	55436805	55436805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152385.2	-1	validated	p.R221Q	0.970	355	0%	315	23.2%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55523610	55523610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135597.1	-1	validated	p.E1624D	0.999	78	0%	76	34.2%	6	33.3%	benign(0.001)	tolerated(0.66)	neutral(0.003)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55646031	55646031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135597.1	-1	validated	p.A29T	1.000	136	0%	105	22.9%	1	100%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
CCDC104	112942	genome.wustl.edu	37	2	55756108	55756108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080667.5	+1	validated	p.R126Q	1.000	60	0%	54	38.9%	124	37.9%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
CCDC104	112942	genome.wustl.edu	37	2	55771189	55771189	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080667.5	+1	validated	p.A252	0.008	247	0%	195	13.3%	179	13.4%	-	-	-	NULL
PNPT1	87178	genome.wustl.edu	37	2	55872517	55872517	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033109.3	-1	validated	p.R597*	1.000	82	0%	47	19.1%	15	0%	-	-	-	superfamily_3_ExoRNase,superfamily_SSF54791
MIR216A	406998	genome.wustl.edu	37	2	56216086	56216086	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385063	-1	known	NULL	0.996	309	0%	266	33.1%	0	-	-	-	-	-
CCDC85A	114800	genome.wustl.edu	37	2	56419897	56419897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080433.1	+1	provisional	p.D188N	1.000	55	0%	51	33.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DUF2216
CCDC85A	114800	genome.wustl.edu	37	2	56420020	56420020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080433.1	+1	provisional	p.A229T	0.007	59	0%	41	34.1%	0	-	benign(0.291)	tolerated(0.58)	neutral(0.095)	NULL
FANCL	55120	genome.wustl.edu	37	2	58431291	58431291	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114636.1	-1	reviewed	p.L149V	0.999	187	0%	98	32.7%	7	42.8%	possibly_damaging(0.637)	tolerated(0.66)	neutral(0.226)	HMMPfam_WD-3
FANCL	55120	genome.wustl.edu	37	2	58456962	58456962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114636.1	-1	reviewed	p.R68Q	0.716	141	0%	105	26.7%	12	25%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
BCL11A	53335	genome.wustl.edu	37	2	60689494	60689494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022893.3	-1	reviewed	p.L185I	1.000	84	0%	71	28.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PAPOLG	64895	genome.wustl.edu	37	2	61002213	61002213	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022894.2	+1	reviewed	p.E217*	1.000	105	0%	87	26.4%	2	0%	-	-	-	HMMPfam_PAP_central,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain
PAPOLG	64895	genome.wustl.edu	37	2	61009113	61009113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022894.2	+1	reviewed	p.T334A	1.000	279	0%	280	28.6%	7	14.2%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_PAP_central,superfamily_PAP/OAS1 substrate-binding domain
AHSA2	130872	genome.wustl.edu	37	2	61411852	61411852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000389584	+1	known	p.T161A	1.000	87	0%	72	23.6%	3	66.6%	probably_damaging(0.99)	tolerated(0.19)	deleterious(0.491)	HMMPfam_Aha1_N,superfamily_Activator of Hsp90 ATPase Aha1
USP34	9736	genome.wustl.edu	37	2	61468730	61468730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014709.3	-1	validated	p.E2248K	1.000	115	0%	83	34.9%	5	40%	benign(0)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61484030	61484030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014709.3	-1	validated	p.V2035A	1.000	93	0%	68	23.5%	1	0%	probably_damaging(1)	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP34	9736	genome.wustl.edu	37	2	61484360	61484360	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014709.3	-1	validated	p.I1990	0.999	142	0%	114	30.7%	6	33.3%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP34	9736	genome.wustl.edu	37	2	61486889	61486889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014709.3	-1	validated	p.K1934T	1.000	127	0%	129	37.2%	9	22.2%	benign(0.428)	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP34	9736	genome.wustl.edu	37	2	61561087	61561087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014709.3	-1	validated	p.R922C	1.000	69	0%	26	19.2%	2	0%	probably_damaging(1)	-	-	NULL
XPO1	7514	genome.wustl.edu	37	2	61725817	61725817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003400.3	-1	reviewed	p.L250F	1.000	118	0%	89	24.7%	22	22.7%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Xpo1,superfamily_ARM-type_fold
FAM161A	84140	genome.wustl.edu	37	2	62066926	62066926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032180.2	-1	validated	p.G405R	0.000	128	0%	153	34.6%	1	0%	possibly_damaging(0.731)	tolerated(0.78)	neutral(0.268)	HMMPfam_UPF0564
FAM161A	84140	genome.wustl.edu	37	2	62067079	62067079	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032180.2	-1	validated	p.R354*	0.004	285	0%	347	26.2%	0	-	-	-	-	HMMPfam_UPF0564
EHBP1	23301	genome.wustl.edu	37	2	63169980	63169980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015252.3	+1	reviewed	p.R473I	1.000	179	0%	117	27.4%	4	75%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
UGP2	7360	genome.wustl.edu	37	2	64113605	64113605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006759.3	+1	reviewed	p.S335Y	1.000	207	0%	199	31.2%	74	43.2%	probably_damaging(0.961)	tolerated(0.07)	deleterious(0.723)	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases
AFTPH	54812	genome.wustl.edu	37	2	64778749	64778749	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203437.2	+1	validated	p.F47	1.000	245	0%	215	27.9%	9	66.6%	-	-	-	NULL
CEP68	23177	genome.wustl.edu	37	2	65300091	65300091	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015147.2	+1	validated	p.E621*	0.095	104	0%	78	29.5%	4	0%	-	-	-	NULL
RAB1A	5861	genome.wustl.edu	37	2	65318184	65318184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004161.4	-1	reviewed	p.R74Q	1.000	69	0%	95	12.6%	198	4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ETAA1	54465	genome.wustl.edu	37	2	67630504	67630504	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019002.3	+1	validated	p.N230K	0.177	133	0%	146	26%	2	0%	probably_damaging(0.97)	tolerated(0.07)	deleterious(0.732)	NULL
BMP10	27302	genome.wustl.edu	37	2	69098343	69098343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014482.1	-1	reviewed	p.D50N	0.988	237	0%	244	34.4%	0	-	possibly_damaging(0.582)	tolerated(0.71)	neutral(0.202)	NULL
AAK1	22848	genome.wustl.edu	37	2	69732723	69732723	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014911.3	-1	reviewed	p.T749	0.038	85	0%	90	17.8%	1	0%	-	-	-	NULL
GMCL1	64395	genome.wustl.edu	37	2	70106122	70106122	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178439.3	+1	provisional	p.E512*	1.000	371	0%	281	35.2%	16	43.7%	-	-	-	NULL
TIA1	7072	genome.wustl.edu	37	2	70439877	70439877	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022173.2	-1	reviewed	p.R379G	1.000	212	0%	191	26.2%	43	37.2%	benign(0.001)	tolerated(0.79)	neutral(0.001)	NULL
PCYOX1	51449	genome.wustl.edu	37	2	70504364	70504364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016297.3	+1	validated	p.R453Q	0.112	200	0%	152	32.2%	33	54.5%	benign(0.025)	tolerated(0.44)	neutral(0.014)	HMMPfam_Prenylcys_lyase,superfamily_FAD/NAD(P)-binding domain
MPHOSPH10	10199	genome.wustl.edu	37	2	71360708	71360708	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005791.1	+1	reviewed	e2+2	1.000	164	0%	192	40.6%	0	-	-	-	-	-
MPHOSPH10	10199	genome.wustl.edu	37	2	71368480	71368480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005791.1	+1	reviewed	p.E476A	1.000	393	0%	407	16.7%	16	37.5%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Mpp10
PAIP2B	400961	genome.wustl.edu	37	2	71417072	71417072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020459.1	-1	validated	p.F73C	1.000	55	0%	31	32.3%	10	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZNF638	27332	genome.wustl.edu	37	2	71592592	71592592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014972.1	+1	reviewed	p.R584Q	0.795	117	0%	85	35.3%	5	60%	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
ZNF638	27332	genome.wustl.edu	37	2	71592753	71592753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014972.1	+1	reviewed	p.R638C	0.999	100	0%	95	29.5%	11	27.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CYP26B1	56603	genome.wustl.edu	37	2	72371271	72371271	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019885.2	-1	reviewed	p.P92	0.941	51	0%	27	48.1%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
RAB11FIP5	26056	genome.wustl.edu	37	2	73316113	73316113	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015470.2	-1	validated	p.S254	0.003	61	0%	65	15.4%	3	0%	-	-	-	NULL
SMYD5	10322	genome.wustl.edu	37	2	73453017	73453017	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006062.2	+1	validated	p.E400	0.980	169	0%	192	28.6%	19	42.1%	-	-	-	NULL
EGR4	1961	genome.wustl.edu	37	2	73519596	73519596	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001965.3	-1	validated	p.G150	0.992	11	0%	13	61.5%	1	0%	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73646281	73646281	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015120.4	+1	reviewed	p.E161*	1.000	298	0%	216	30.1%	0	-	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73651668	73651668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015120.4	+1	reviewed	p.R292H	0.492	119	0%	75	33.3%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73675941	73675941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015120.4	+1	reviewed	p.S762A	0.000	566	0%	524	30.7%	0	-	possibly_damaging(0.882)	deleterious(0.04)	deleterious(0.694)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73676993	73676993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015120.4	+1	reviewed	p.E1112D	0.000	464	0%	426	32.6%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73680437	73680437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015120.4	+1	reviewed	p.E2260D	0.992	106	0%	78	38.5%	2	50%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73784461	73784461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015120.4	+1	reviewed	p.S3397Y	0.001	299	0%	269	27.1%	1	100%	possibly_damaging(0.776)	deleterious(0)	deleterious(0.734)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73828398	73828398	+	Silent	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015120.4	+1	reviewed	p.P3982	0.992	118	0%	100	30%	8	75%	-	-	-	NULL
DCTN1	1639	genome.wustl.edu	37	2	74601454	74601454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004082.3	-1	reviewed	p.R143Q	1.000	91	1.1%	75	34.7%	0	-	possibly_damaging(0.781)	tolerated(0.48)	neutral(0.303)	NULL
DQX1	165545	genome.wustl.edu	37	2	74746774	74746774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133637.2	-1	validated	p.R572Q	0.928	145	0%	148	36.5%	0	-	benign(0.066)	deleterious(0.03)	neutral(0.369)	HMMPfam_DUF1605
C2orf65	130951	genome.wustl.edu	37	2	74802591	74802591	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138804.3	-1	predicted	p.F350V	1.000	335	0%	297	30.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SEMA4F	10505	genome.wustl.edu	37	2	74883687	74883687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004263.3	+1	provisional	p.A58T	0.003	185	0%	135	39.3%	1	100%	benign(0.006)	tolerated(1)	-	superfamily_Sema domain
SEMA4F	10505	genome.wustl.edu	37	2	74900866	74900866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004263.3	+1	provisional	p.D245N	0.968	107	0%	97	23.7%	0	-	benign(0.05)	deleterious(0.01)	neutral(0.409)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA4F	10505	genome.wustl.edu	37	2	74902371	74902371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004263.3	+1	provisional	p.H411R	1.000	128	0%	142	32.4%	1	0%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
TACR1	6869	genome.wustl.edu	37	2	75278512	75278512	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001058.3	-1	reviewed	p.I266	1.000	81	0%	86	41.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TACR1	6869	genome.wustl.edu	37	2	75425860	75425860	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001058.3	-1	reviewed	p.T67	0.999	90	0%	89	21.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM176A	84141	genome.wustl.edu	37	2	75745244	75745244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135032.1	-1	validated	p.S8N	0.001	144	0%	119	27.7%	41	26.8%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
GCFC2	6936	genome.wustl.edu	37	2	75929471	75929471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003203.4	-1	validated	p.S158Y	1.000	164	0.6%	186	28.5%	11	9%	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	NULL
LRRTM4	80059	genome.wustl.edu	37	2	77746874	77746874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134745.1	-1	validated	p.D41N	1.000	103	0%	122	35.2%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	superfamily_L domain-like
MAT2A	4144	genome.wustl.edu	37	2	85768848	85768848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005911.4	+1	validated	p.D129Y	1.000	68	0%	64	31.2%	37	62.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_S-AdoMet_synt_M,superfamily_S-adenosylmethionine synthetase
GGCX	2677	genome.wustl.edu	37	2	85781371	85781371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000821.4	-1	reviewed	p.L262I	0.998	202	0%	160	26.3%	18	44.4%	benign(0.176)	tolerated(0.24)	neutral(0.053)	HMMPfam_VKG_Carbox,HMMSmart_HTTM
USP39	10713	genome.wustl.edu	37	2	85857895	85857895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006590.2	+1	validated	p.Y259H	1.000	162	0%	176	30.1%	34	47%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP39	10713	genome.wustl.edu	37	2	85872076	85872076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006590.2	+1	validated	p.V478A	1.000	93	0%	75	29.3%	66	40.9%	possibly_damaging(0.795)	deleterious(0.01)	deleterious(0.704)	HMMPfam_UCH,superfamily_Cysteine proteinases
POLR1A	25885	genome.wustl.edu	37	2	86315739	86315739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015425.3	-1	validated	p.F227S	0.010	107	0%	88	27.3%	2	0%	benign(0)	tolerated(0.37)	neutral(0.019)	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
PTCD3	55037	genome.wustl.edu	37	2	86357833	86357833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017952.5	+1	validated	p.R404G	0.818	194	0%	173	27.7%	16	81.2%	benign(0.069)	tolerated(0.12)	neutral(0.265)	NULL
PTCD3	55037	genome.wustl.edu	37	2	86360381	86360381	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017952.5	+1	validated	e18+2	1.000	180	0%	166	33.1%	0	-	-	-	-	-
IMMT	10989	genome.wustl.edu	37	2	86406557	86406557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006839.2	-1	validated	p.S103L	1.000	100	0%	121	28.1%	29	31%	benign(0.019)	deleterious(0.04)	neutral(0.350)	HMMPfam_Mitofilin
IMMT	10989	genome.wustl.edu	37	2	86406637	86406637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006839.2	-1	validated	p.E76D	1.000	113	0%	128	26.6%	36	36.1%	possibly_damaging(0.693)	deleterious(0)	deleterious(0.693)	HMMPfam_Mitofilin
RNF103	7844	genome.wustl.edu	37	2	86831398	86831398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005667.2	-1	reviewed	p.E542D	0.179	644	0%	548	29.7%	35	40%	possibly_damaging(0.686)	tolerated(0.9)	neutral(0.245)	NULL
RNF103	7844	genome.wustl.edu	37	2	86832111	86832111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005667.2	-1	reviewed	p.E305K	1.000	298	0%	263	31.9%	13	46.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RMND5A	64795	genome.wustl.edu	37	2	87000524	87000524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022780.3	+1	validated	p.I389T	1.000	111	0%	87	21.8%	18	61.1%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	superfamily_RING/U-box
CD8A	925	genome.wustl.edu	37	2	87017470	87017470	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001768.6	-1	reviewed	p.F128	0.582	38	0%	28	28.6%	5	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
CD8A	925	genome.wustl.edu	37	2	87017745	87017745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001768.6	-1	reviewed	p.E37K	0.000	33	0%	22	18.2%	9	0%	benign(0.04)	tolerated(0.34)	neutral(0.025)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CD8B	926	genome.wustl.edu	37	2	87049482	87049482	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172101.3	-1	reviewed	p.P212	0.000	180	0%	145	28.3%	1	0%	-	-	-	NULL
LOC440871	440871	genome.wustl.edu	37	2	87565660	87565660	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001719095.2	+1	model	p.F9	0.000	259	0%	245	24.5%	0	-	-	-	-	NULL
LOC440871	440871	genome.wustl.edu	37	2	87565921	87565921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001719095.2	+1	model	p.R38I	0.126	213	0%	183	14.2%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
KRCC1	51315	genome.wustl.edu	37	2	88327448	88327448	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016618.1	-1	provisional	p.E212A	0.963	306	0%	294	25.9%	15	40%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
THNSL2	55258	genome.wustl.edu	37	2	88478438	88478438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018271.3	+1	validated	p.F236L	1.000	297	0%	214	28.5%	3	0%	benign(0.195)	tolerated(0.05)	neutral(0.364)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
C2orf51	200523	genome.wustl.edu	37	2	88828705	88828705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152670.2	+1	validated	p.F86V	1.000	195	0%	204	32.8%	0	-	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	NULL
ANKRD36BP2	645784	genome.wustl.edu	37	2	89084256	89084256	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_015424.1	+1	predicted	NULL	0.040	145	0%	89	31.5%	0	-	-	-	-	-
IGKJ5	28946	genome.wustl.edu	37	2	89160094	89160094	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390238	-1	known	p.T8	0.000	142	0%	122	32.8%	68	0%	unknown(0)	-	-	NULL
IGKV3-11	28914	genome.wustl.edu	37	2	89326809	89326809	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000483158	-1	known	p.I68	0.038	288	0%	283	32.9%	53	0%	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGKV1D-33	28896	genome.wustl.edu	37	2	89953268	89953268	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390265	+1	known	p.G88	0.965	246	0%	252	14.3%	12	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
LOC344065	344065	genome.wustl.edu	37	2	95880418	95880418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_292895.7	+1	model	p.E228D	0.838	37	0%	40	22.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PROM2	150696	genome.wustl.edu	37	2	95950849	95950849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144707.2	+1	reviewed	p.D621N	0.017	19	0%	10	40%	18	38.8%	benign(0.025)	tolerated(0.27)	neutral(0.035)	HMMPfam_Prominin
LOC400986	400986	genome.wustl.edu	37	2	96593132	96593132	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001717763.2	-1	model	p.E306	0.016	184	0%	193	20.2%	0	-	-	-	-	NULL
ADRA2B	151	genome.wustl.edu	37	2	96780785	96780785	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000409345	-1	known	p.F368	0.635	33	0%	21	33.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ADRA2B	151	genome.wustl.edu	37	2	96781109	96781109	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000409345	-1	known	p.E260	0.009	36	0%	20	30%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ASTL	431705	genome.wustl.edu	37	2	96789646	96789646	+	Silent	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002036.3	-1	validated	p.P413	0.931	57	0%	62	33.9%	0	-	-	-	-	NULL
ASTL	431705	genome.wustl.edu	37	2	96795653	96795653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002036.3	-1	validated	p.G262S	1.000	77	0%	96	29.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Astacin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ASTL	431705	genome.wustl.edu	37	2	96799277	96799277	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002036.3	-1	validated	p.E114	0.982	56	0%	57	15.8%	0	-	-	-	-	"HMMPfam_Astacin,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
SNRNP200	23020	genome.wustl.edu	37	2	96969062	96969062	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014014.3	-1	reviewed	p.R72S	1.000	343	0%	321	29.9%	14	42.8%	possibly_damaging(0.607)	tolerated(0.18)	neutral(0.267)	NULL
ITPRIPL1	150771	genome.wustl.edu	37	2	96992640	96992640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178495.5	+1	validated	p.D99Y	0.174	120	0%	121	42.1%	0	-	possibly_damaging(0.824)	deleterious(0.01)	deleterious(0.718)	NULL
FER1L5	90342	genome.wustl.edu	37	2	97370056	97370056	+	Missense_Mutation	SNP	C	C	T	rs187999544	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113382.1	+1	provisional	p.S2005L	0.000	94	0%	103	25.2%	0	-	benign(0)	tolerated(1)	-	NULL
CNNM3	26505	genome.wustl.edu	37	2	97492678	97492678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017623.4	+1	validated	p.S493L	0.999	118	0%	107	38.3%	15	20%	benign(0.08)	deleterious(0)	neutral(0.450)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97853084	97853084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000461153	+1	known	p.D697Y	0.017	55	0%	54	25.9%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97871818	97871818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000461153	+1	known	p.D867Y	0.004	16	0%	23	30.4%	0	-	possibly_damaging(0.538)	deleterious(0)	deleterious(0.627)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97911336	97911336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000461153	+1	known	p.S1474Y	0.018	165	0%	150	25.3%	0	-	benign(0.113)	tolerated(0.06)	neutral(0.332)	NULL
TMEM131	23505	genome.wustl.edu	37	2	98431735	98431735	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015348.1	-1	validated	p.K407Q	1.000	115	0%	83	36.1%	6	83.3%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
VWA3B	200403	genome.wustl.edu	37	2	98797510	98797510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000416277	+1	known	p.R407Q	0.008	162	0.6%	109	25.7%	0	-	unknown(0)	-	-	NULL
VWA3B	200403	genome.wustl.edu	37	2	98828447	98828447	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144992.4	+1	provisional	p.E598*	0.998	93	0%	73	35.6%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWA3B	200403	genome.wustl.edu	37	2	98887319	98887319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144992.4	+1	provisional	p.K1006N	0.999	181	0%	180	29.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CNGA3	1261	genome.wustl.edu	37	2	98996717	98996717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001298.2	+1	reviewed	p.P99T	1.000	40	0%	32	28.1%	0	-	benign(0.131)	deleterious(0.02)	neutral(0.394)	NULL
CNGA3	1261	genome.wustl.edu	37	2	99012564	99012564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001298.2	+1	reviewed	p.L311I	1.000	139	0%	162	11.7%	0	-	possibly_damaging(0.493)	tolerated(0.12)	neutral(0.425)	HMMPfam_Ion_trans,superfamily_SSF81324
CNGA3	1261	genome.wustl.edu	37	2	99012779	99012779	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001298.2	+1	reviewed	p.V382	0.021	101	0%	105	33.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
INPP4A	3631	genome.wustl.edu	37	2	99162480	99162480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134224.1	+1	reviewed	p.F333C	1.000	32	0%	22	18.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UNC50	25972	genome.wustl.edu	37	2	99232737	99232737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014044.5	+1	validated	p.F157V	1.000	279	0%	245	35.5%	63	46%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_UNC-50
TSGA10	80705	genome.wustl.edu	37	2	99695153	99695153	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025244.2	-1	validated	p.I284S	1.000	109	0%	79	24.1%	1	0%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
TSGA10	80705	genome.wustl.edu	37	2	99695167	99695167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025244.2	-1	validated	p.K279N	1.000	114	0%	81	46.9%	1	100%	benign(0.315)	deleterious(0.02)	deleterious(0.482)	NULL
EIF5B	9669	genome.wustl.edu	37	2	99980137	99980137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015904.3	+1	reviewed	p.D317Y	1.000	189	0%	160	34.4%	50	40%	benign(0.113)	deleterious(0.02)	neutral(0.392)	NULL
REV1	51455	genome.wustl.edu	37	2	100065942	100065942	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016316.2	-1	reviewed	p.K69T	1.000	157	0%	93	34.4%	7	71.4%	benign(0.086)	deleterious(0.02)	neutral(0.390)	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
NPAS2	4862	genome.wustl.edu	37	2	101565837	101565837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002518.3	+1	reviewed	p.D165N	1.000	71	0%	51	21.6%	1	0%	possibly_damaging(0.822)	deleterious(0.01)	deleterious(0.717)	NULL
NPAS2	4862	genome.wustl.edu	37	2	101581341	101581341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002518.3	+1	reviewed	p.E246K	1.000	91	0%	87	42.5%	4	25%	possibly_damaging(0.946)	deleterious(0.04)	deleterious(0.739)	HMMSmart_PAS
TBC1D8	11138	genome.wustl.edu	37	2	101624620	101624620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102426.1	-1	validated	p.E1029G	1.000	40	0%	52	32.7%	8	25%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TBC1D8	11138	genome.wustl.edu	37	2	101624732	101624732	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102426.1	-1	validated	p.E992*	1.000	27	0%	33	18.2%	13	7.6%	-	-	-	NULL
TBC1D8	11138	genome.wustl.edu	37	2	101666932	101666932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102426.1	-1	validated	p.R253Q	0.997	43	0%	40	32.5%	9	44.4%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
C2orf29	55571	genome.wustl.edu	37	2	101874291	101874291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017546.4	+1	validated	p.L185I	1.000	235	0%	231	24.7%	22	54.5%	benign(0.05)	tolerated(0.25)	neutral(0.040)	NULL
IL18R1	8809	genome.wustl.edu	37	2	102992424	102992424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003855.2	+1	reviewed	p.E176K	0.076	144	0%	124	41.9%	1	0%	benign(0.091)	tolerated(0.39)	neutral(0.022)	superfamily_SSF48726
IL18RAP	8807	genome.wustl.edu	37	2	103063584	103063584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003853.2	+1	reviewed	p.A376V	0.000	331	0.3%	294	29.9%	0	-	benign(0)	tolerated(1)	-	NULL
SLC9A2	6549	genome.wustl.edu	37	2	103324601	103324601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003048.3	+1	validated	p.A698T	0.000	309	0%	206	26.2%	1	0%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
MRPS9	64965	genome.wustl.edu	37	2	105687916	105687916	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182640.2	+1	reviewed	e4-1	1.000	183	0%	155	35.5%	0	-	-	-	-	-
GPR45	11250	genome.wustl.edu	37	2	105859134	105859134	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007227.3	+1	reviewed	p.F273	0.982	276	0.7%	222	31.5%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C2orf40	84417	genome.wustl.edu	37	2	106688349	106688349	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032411.2	+1	validated	e2+2	1.000	81	0%	47	38.3%	0	-	-	-	-	-
C2orf40	84417	genome.wustl.edu	37	2	106690392	106690392	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032411.2	+1	validated	p.E60*	0.710	183	0%	129	31.8%	0	-	-	-	-	NULL
ENSG00000169659	0	genome.wustl.edu	37	2	107002858	107002858	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000324709	+1	known	p.E58*	0.077	661	0%	559	29.7%	0	-	-	-	-	HMMPfam_PAN_1,HMMSmart_PAN_AP,superfamily_SSF57414
RGPD3	653489	genome.wustl.edu	37	2	107040243	107040243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144013.1	-1	validated	p.R1394C	0.930	1059	0.2%	926	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RGPD3	653489	genome.wustl.edu	37	2	107040579	107040579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144013.1	-1	validated	p.L1282I	0.979	894	0%	753	29.1%	0	-	probably_damaging(0.998)	tolerated(0.45)	deleterious(0.486)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107049414	107049414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144013.1	-1	validated	p.R816C	1.000	392	2.3%	430	20.9%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107049644	107049644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144013.1	-1	validated	p.S768Y	0.281	843	0%	791	17.4%	0	-	possibly_damaging(0.928)	deleterious(0.03)	deleterious(0.740)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107064045	107064045	+	Silent	SNP	C	C	T	rs2556188		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144013.1	-1	validated	p.A269	1.000	643	0%	550	9.5%	0	-	-	-	-	superfamily_SSF48452
RGPD3	653489	genome.wustl.edu	37	2	107069174	107069174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144013.1	-1	validated	p.S205L	0.946	684	0%	688	14.1%	0	-	possibly_damaging(0.484)	tolerated(0.36)	neutral(0.180)	superfamily_SSF48452
ST6GAL2	84620	genome.wustl.edu	37	2	107450546	107450546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142351.1	-1	validated	p.D334Y	1.000	217	0%	133	27.1%	2	0%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase
ST6GAL2	84620	genome.wustl.edu	37	2	107459863	107459863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142351.1	-1	validated	p.D191N	0.117	68	0%	54	31.5%	1	0%	benign(0.174)	tolerated(0.09)	neutral(0.312)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108475841	108475841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182588.2	+1	validated	p.L489I	1.000	367	0%	402	23.4%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108477333	108477333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182588.2	+1	validated	p.P624S	1.000	379	0%	399	20.3%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108478154	108478154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182588.2	+1	validated	p.K721N	1.000	471	0%	442	25.3%	0	-	probably_damaging(0.958)	tolerated(0.34)	neutral(0.425)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108499260	108499260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182588.2	+1	validated	p.L1733I	1.000	413	0%	316	22.2%	1	0%	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	HMMPfam_GRIP,HMMSmart_Grip
RGPD4	285190	genome.wustl.edu	37	2	108499318	108499318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182588.2	+1	validated	p.A1752V	1.000	419	0%	354	19.5%	2	0%	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	HMMSmart_Grip
SLC5A7	60482	genome.wustl.edu	37	2	108624944	108624944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021815.2	+1	provisional	p.L307F	0.000	80	0%	91	35.2%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_SSF
SLC5A7	60482	genome.wustl.edu	37	2	108626705	108626705	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021815.2	+1	provisional	p.I377	0.184	107	0%	115	35.7%	0	-	-	-	-	HMMPfam_SSF
SULT1C3	442038	genome.wustl.edu	37	2	108869811	108869811	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008743.1	+1	provisional	p.F104	0.000	274	0%	247	34.4%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
RANBP2	5903	genome.wustl.edu	37	2	109357091	109357091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006267.4	+1	reviewed	p.R310Q	1.000	592	0%	562	30.2%	3	66.6%	unknown(0)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109367738	109367738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006267.4	+1	reviewed	p.N431T	0.989	324	0%	257	26.8%	1	0%	unknown(0)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109381388	109381388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006267.4	+1	reviewed	p.P1465S	0.998	146	0%	125	22.4%	6	16.6%	benign(0)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109384100	109384100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006267.4	+1	reviewed	p.R2369C	1.000	988	0.1%	830	23.4%	4	100%	probably_damaging(1)	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RANBP2	5903	genome.wustl.edu	37	2	109397730	109397730	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006267.4	+1	reviewed	p.N2869H	1.000	98	0%	78	32.1%	51	35.2%	probably_damaging(0.964)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109398594	109398594	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006267.4	+1	reviewed	p.K2924T	1.000	106	0%	80	26.3%	36	33.3%	benign(0.231)	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
SH3RF3	344558	genome.wustl.edu	37	2	110259140	110259140	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000444352	+1	known	p.R21*	0.033	28	0%	14	28.6%	2	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SOWAHC	65124	genome.wustl.edu	37	2	110373224	110373224	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023016.3	+1	validated	p.I386	0.806	30	0%	23	47.8%	2	0%	-	-	-	NULL
NPHP1	4867	genome.wustl.edu	37	2	110922275	110922275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000272.3	-1	reviewed	p.A254V	0.998	437	0%	387	31.8%	4	25%	possibly_damaging(0.905)	tolerated(0.21)	neutral(0.403)	NULL
NPHP1	4867	genome.wustl.edu	37	2	110936074	110936074	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000272.3	-1	reviewed	p.E85	0.380	212	0%	162	23.5%	2	0%	-	-	-	NULL
BCL2L11	10018	genome.wustl.edu	37	2	111881326	111881326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138621.3	+1	reviewed	p.A2T	1.000	78	0%	59	32.2%	3	66.6%	possibly_damaging(0.509)	deleterious(0)	deleterious(0.615)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112536282	112536282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022662.2	-1	validated	p.E1785D	1.000	187	0%	139	28.1%	25	32%	possibly_damaging(0.525)	tolerated(0.42)	neutral(0.191)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112608479	112608479	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000427997	-1	known	p.G43S	0.987	139	0%	141	24.8%	4	75%	-	-	-	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112630246	112630246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022662.2	-1	validated	p.R191Q	1.000	133	0%	126	23%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FBLN7	129804	genome.wustl.edu	37	2	112942777	112942777	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153214.2	+1	validated	e7-1	1.000	82	0%	61	13.1%	0	-	-	-	-	-
MIR1302-3	100302128	genome.wustl.edu	37	2	114340629	114340629	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000408128	-1	known	NULL	0.012	367	0%	316	19.6%	0	-	-	-	-	-
LOC645529	645529	genome.wustl.edu	37	2	114426093	114426093	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001716670.2	-1	model	p.C159	0.797	120	0%	73	34.2%	1	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SLC35F5	80255	genome.wustl.edu	37	2	114476741	114476741	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025181.2	-1	provisional	p.R496*	1.000	178	0%	157	28.7%	31	19.3%	-	-	-	NULL
ACTR3	10096	genome.wustl.edu	37	2	114699799	114699799	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005721.3	+1	reviewed	p.E241*	1.000	99	0%	81	35.8%	135	1.4%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
DPP10	57628	genome.wustl.edu	37	2	116485481	116485481	+	Silent	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020868.3	+1	validated	p.I222	1.000	80	0%	46	32.6%	2	100%	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP10	57628	genome.wustl.edu	37	2	116538522	116538522	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020868.3	+1	validated	p.F478	0.995	132	0%	137	28.5%	4	25%	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP10	57628	genome.wustl.edu	37	2	116548691	116548691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020868.3	+1	validated	p.K522N	0.921	100	0%	73	31.5%	4	75%	possibly_damaging(0.725)	tolerated(0.14)	deleterious(0.513)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP10	57628	genome.wustl.edu	37	2	116594295	116594295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020868.3	+1	validated	p.I719V	0.919	289	0%	177	29.9%	1	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
MARCO	8685	genome.wustl.edu	37	2	119750794	119750794	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006770.3	+1	reviewed	p.D449	0.004	112	0%	121	27.3%	23	0%	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
C2orf76	130355	genome.wustl.edu	37	2	120097548	120097548	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017927.2	-1	predicted	e1-1	0.965	167	0%	183	35.5%	0	-	-	-	-	-
ENSG00000163075	0	genome.wustl.edu	37	2	120385233	120385233	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000443972	+1	known	p.R66Q	0.000	352	0%	254	36.2%	1	0%	-	-	-	NULL
GLI2	2736	genome.wustl.edu	37	2	121742087	121742087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005270.4	+1	reviewed	p.Y575C	1.000	284	0%	227	12.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GLI2	2736	genome.wustl.edu	37	2	121748150	121748150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005270.4	+1	reviewed	p.P1554S	1.000	167	0.6%	98	35.7%	2	0%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
TFCP2L1	29842	genome.wustl.edu	37	2	121997185	121997185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014553.2	-1	validated	p.A270V	0.813	25	0%	21	33.3%	5	20%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
CLASP1	23332	genome.wustl.edu	37	2	122227474	122227474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015282.2	-1	validated	p.S259A	0.998	149	0%	119	24.4%	0	-	benign(0.375)	tolerated(0.81)	neutral(0.120)	superfamily_ARM repeat
CNTNAP5	129684	genome.wustl.edu	37	2	125175089	125175089	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130773.2	+1	reviewed	p.F151I	0.959	116	0%	103	39.8%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like
CNTNAP5	129684	genome.wustl.edu	37	2	125232366	125232366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130773.2	+1	reviewed	p.K323N	1.000	57	0%	38	21.1%	0	-	benign(0.008)	tolerated(0.08)	neutral(0.300)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CNTNAP5	129684	genome.wustl.edu	37	2	125530596	125530596	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130773.2	+1	reviewed	e17+2	1.000	178	0%	144	28.5%	0	-	-	-	-	-
CNTNAP5	129684	genome.wustl.edu	37	2	125669082	125669082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130773.2	+1	reviewed	p.N1231D	1.000	47	0%	43	14%	0	-	benign(0.037)	tolerated(0.29)	neutral(0.031)	NULL
CYP27C1	339761	genome.wustl.edu	37	2	127956960	127956960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001665.3	-1	reviewed	p.V182I	0.978	42	0%	42	19%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
ERCC3	2071	genome.wustl.edu	37	2	128028923	128028923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000122.1	-1	reviewed	p.R645Q	1.000	498	0%	429	28.7%	31	32.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP3K2	10746	genome.wustl.edu	37	2	128075281	128075281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006609.3	-1	reviewed	p.R417Q	1.000	30	0%	41	22%	8	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAP3K2	10746	genome.wustl.edu	37	2	128079684	128079684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006609.3	-1	reviewed	p.R328I	1.000	107	0%	76	18.4%	12	33.3%	benign(0.046)	tolerated(0.33)	neutral(0.026)	NULL
IWS1	55677	genome.wustl.edu	37	2	128263229	128263229	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017969.2	-1	validated	p.S84R	1.000	250	0%	308	34.1%	18	38.8%	benign(0.132)	deleterious(0.04)	neutral(0.360)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128335788	128335788	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080527.1	+1	provisional	p.F310	1.000	23	0%	25	36%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR33	55339	genome.wustl.edu	37	2	128522458	128522458	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018383.3	-1	reviewed	p.S190	1.000	234	0%	202	37.6%	34	50%	-	-	-	superfamily_WD40_like
SAP130	79595	genome.wustl.edu	37	2	128707919	128707919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024545.3	-1	validated	p.S820F	1.000	575	0%	631	35.5%	36	52.7%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	NULL
SAP130	79595	genome.wustl.edu	37	2	128772379	128772379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024545.3	-1	validated	p.R232Q	1.000	58	0%	57	22.8%	15	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RAB6C	84084	genome.wustl.edu	37	2	130738190	130738190	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032144.2	+1	validated	p.R168*	1.000	743	0%	783	22.6%	1	0%	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
RAB6C	84084	genome.wustl.edu	37	2	130738443	130738443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032144.2	+1	validated	p.S252L	0.872	564	0%	523	29.6%	0	-	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
TUBA3E	112714	genome.wustl.edu	37	2	130953809	130953809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207312.2	-1	validated	p.D47N	1.000	79	0%	85	20%	0	-	possibly_damaging(0.566)	deleterious(0)	deleterious(0.638)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
TUBA3E	112714	genome.wustl.edu	37	2	130953816	130953816	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207312.2	-1	validated	p.G44	0.999	85	0%	84	40.5%	0	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
LOC653269	653269	genome.wustl.edu	37	2	131221415	131221415	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_928585.2	-1	model	p.I734	1.000	46	0%	52	26.9%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ARHGEF4	50649	genome.wustl.edu	37	2	131785611	131785611	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015320.2	+1	reviewed	p.H174P	1.000	23	0%	28	25%	1	0%	benign(0.003)	tolerated(0.24)	neutral(0.037)	superfamily_SH3-domain
ARHGEF4	50649	genome.wustl.edu	37	2	131798809	131798809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015320.2	+1	reviewed	p.D371N	0.878	61	0%	23	17.4%	7	71.4%	benign(0.004)	tolerated(0.16)	neutral(0.059)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF4	50649	genome.wustl.edu	37	2	131799476	131799476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015320.2	+1	reviewed	p.D476N	0.998	36	0%	15	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_DBL homology domain (DH-domain),superfamily_PH domain-like
POTEE	445582	genome.wustl.edu	37	2	131984472	131984472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083538.1	+1	validated	p.A296V	0.013	341	0%	314	14.3%	0	-	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
POTEE	445582	genome.wustl.edu	37	2	132021753	132021753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083538.1	+1	validated	p.V909M	1.000	181	0%	216	13.9%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
LOC150786	150786	genome.wustl.edu	37	2	132121126	132121126	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077637.1	-1	validated	p.Y56*	0.998	817	0.1%	892	18.5%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,PatternScan_BACTERIAL_OPSIN_RET,superfamily_SSF52540
LOC150786	150786	genome.wustl.edu	37	2	132121177	132121177	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077637.1	-1	validated	p.D39E	1.000	643	0%	684	16.7%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
ANKRD30BL	554226	genome.wustl.edu	37	2	132914606	132914606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000409867	-1	known	p.E149D	0.308	63	0%	48	22.9%	0	-	benign(0.012)	tolerated(0.15)	neutral(0.241)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ZNF806	646915	genome.wustl.edu	37	2	133075043	133075043	+	Silent	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001724242.2	+1	model	p.I168	0.038	247	0%	203	15.3%	0	-	-	-	-	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133541680	133541680	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207363.2	-1	validated	p.E902*	0.005	106	0.9%	124	25.8%	2	50%	-	-	-	NULL
TMEM163	81615	genome.wustl.edu	37	2	135223793	135223793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030923.4	-1	validated	p.D187N	0.998	27	0%	43	30.2%	5	0%	possibly_damaging(0.477)	tolerated(0.32)	neutral(0.181)	NULL
ACMSD	130013	genome.wustl.edu	37	2	135616903	135616903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138326.2	+1	validated	p.R59C	0.997	137	0%	107	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_2,superfamily_Metallo-dependent hydrolases
CCNT2	905	genome.wustl.edu	37	2	135711965	135711965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058241.1	+1	reviewed	p.S647Y	1.000	281	0%	235	32.3%	5	40%	possibly_damaging(0.922)	tolerated(0.59)	neutral(0.376)	NULL
YSK4	80122	genome.wustl.edu	37	2	135738803	135738803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025052.3	-1	validated	p.I1170L	1.000	340	0%	317	31.2%	0	-	possibly_damaging(0.495)	tolerated(0.1)	neutral(0.452)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
YSK4	80122	genome.wustl.edu	37	2	135739044	135739044	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025052.3	-1	validated	p.K1089	0.998	270	0.4%	255	29.8%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
YSK4	80122	genome.wustl.edu	37	2	135744337	135744337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025052.3	-1	validated	p.R702Q	0.304	245	0%	229	32.3%	0	-	benign(0.301)	tolerated(0.42)	neutral(0.107)	NULL
YSK4	80122	genome.wustl.edu	37	2	135744570	135744570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025052.3	-1	validated	p.Q624H	0.598	309	0%	305	34.8%	0	-	benign(0.063)	deleterious(0)	neutral(0.449)	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135883788	135883788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012233.2	+1	reviewed	p.E290K	1.000	116	0%	84	21.4%	4	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZRANB3	84083	genome.wustl.edu	37	2	135960485	135960485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032143.2	-1	provisional	p.D1020Y	1.000	37	0%	35	45.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HNH,HMMSmart_SM00507
ZRANB3	84083	genome.wustl.edu	37	2	136033273	136033273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032143.2	-1	provisional	p.K340T	1.000	75	0%	51	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZRANB3	84083	genome.wustl.edu	37	2	136261910	136261910	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032143.2	-1	provisional	p.K50	0.928	218	0%	161	34.8%	0	-	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
R3HDM1	23518	genome.wustl.edu	37	2	136362506	136362506	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015361.2	+1	provisional	p.N31H	1.000	48	0%	51	27.5%	4	75%	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
R3HDM1	23518	genome.wustl.edu	37	2	136374262	136374262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015361.2	+1	provisional	p.R80W	1.000	27	0%	32	31.2%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LCT	3938	genome.wustl.edu	37	2	136564921	136564921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002299.2	-1	reviewed	p.S1317Y	1.000	128	0%	124	29%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136566592	136566592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002299.2	-1	reviewed	p.D1109N	0.987	107	0%	91	33%	0	-	benign(0.183)	tolerated(0.41)	neutral(0.032)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
MCM6	4175	genome.wustl.edu	37	2	136627860	136627860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005915.4	-1	reviewed	p.D109A	1.000	349	0%	333	13.5%	28	21.4%	possibly_damaging(0.5)	tolerated(0.34)	neutral(0.190)	superfamily_Nucleic acid-binding proteins
DARS	1615	genome.wustl.edu	37	2	136678081	136678081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001349.2	-1	validated	p.E301K	1.000	95	0%	72	37.5%	125	44.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
THSD7B	80731	genome.wustl.edu	37	2	138208468	138208468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080427.1	+1	provisional	p.D974N	1.000	135	0%	95	24.2%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7B	80731	genome.wustl.edu	37	2	138208550	138208550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080427.1	+1	provisional	p.Y1001C	1.000	72	0%	59	27.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
HNMT	3176	genome.wustl.edu	37	2	138762705	138762705	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006895.2	+1	reviewed	p.L145	1.000	481	0%	389	35.2%	26	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LOC440917	440917	genome.wustl.edu	37	2	139045434	139045434	+	RNA	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_041289.2	-1	model	NULL	0.963	31	0%	53	26.4%	1	100%	-	-	-	-
LOC440917	440917	genome.wustl.edu	37	2	139045705	139045705	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_041289.2	-1	model	NULL	0.999	245	0%	301	31.6%	0	-	-	-	-	-
SPOPL	339745	genome.wustl.edu	37	2	139318379	139318379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001664.2	+1	validated	p.R240Q	1.000	110	0%	74	28.4%	5	40%	benign(0.002)	deleterious(0.03)	neutral(0.364)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
LRP1B	53353	genome.wustl.edu	37	2	141110559	141110559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.Q3871H	1.000	337	0%	240	22.9%	0	-	benign(0.313)	tolerated(0.1)	neutral(0.384)	HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_SSF57196
LRP1B	53353	genome.wustl.edu	37	2	141130591	141130591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.K3585R	1.000	237	0%	170	37.1%	0	-	benign(0.002)	tolerated(0.6)	neutral(0.004)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141130598	141130598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.D3583Y	1.000	231	0%	175	24.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141200149	141200149	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.T3446	0.966	155	0%	184	26.1%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141272325	141272325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.W2722C	1.000	110	0%	75	37.3%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141359172	141359172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.A2279V	1.000	66	0%	70	15.7%	0	-	probably_damaging(0.958)	tolerated(0.33)	neutral(0.426)	HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141459810	141459810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.D2068N	1.000	267	0%	214	28.5%	0	-	benign(0.018)	tolerated(0.82)	neutral(0.001)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141474326	141474326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.D1940Y	1.000	379	0%	327	11%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141607884	141607884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.L1576I	1.000	103	0%	98	11.2%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_SSF57196,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141625828	141625828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.L1392I	1.000	94	0%	67	22.4%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141641457	141641457	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.G1366	0.995	132	0%	114	33.3%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141707850	141707850	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.D1030	1.000	103	0%	95	22.1%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141806648	141806648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.E566K	1.000	365	0%	234	35%	0	-	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141816552	141816552	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018557.2	-1	validated	p.I436	0.922	188	0%	121	16.5%	0	-	-	-	-	HMMSmart_LY,superfamily_SSF63825
KYNU	8942	genome.wustl.edu	37	2	143798011	143798011	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003937.2	+1	reviewed	p.A352	0.989	188	0%	143	31.5%	7	0%	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
ARHGAP15	55843	genome.wustl.edu	37	2	144244977	144244977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018460.3	+1	validated	p.D247N	1.000	311	0%	225	27.1%	3	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ZEB2	9839	genome.wustl.edu	37	2	145147546	145147546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014795.3	-1	reviewed	p.K1039N	1.000	71	0%	70	31.4%	10	0%	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZEB2	9839	genome.wustl.edu	37	2	145157256	145157256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014795.3	-1	reviewed	p.E500K	1.000	186	0%	196	24%	2	0%	possibly_damaging(0.604)	deleterious(0.05)	deleterious(0.555)	NULL
ACVR2A	92	genome.wustl.edu	37	2	148676061	148676061	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001616.3	+1	reviewed	p.E288*	1.000	148	0%	103	24.3%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ORC4	5000	genome.wustl.edu	37	2	148695750	148695750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002552.2	-1	reviewed	p.S363A	1.000	94	0%	72	37.5%	39	71.7%	benign(0.108)	tolerated(0.15)	neutral(0.249)	NULL
MBD5	55777	genome.wustl.edu	37	2	149226464	149226464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018328.4	+1	reviewed	p.S318P	1.000	134	0%	127	40.2%	1	0%	possibly_damaging(0.741)	tolerated(0.15)	deleterious(0.512)	NULL
MBD5	55777	genome.wustl.edu	37	2	149227503	149227503	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000416015	+1	known	p.R404*	1.000	143	0%	112	23.2%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MBD5	55777	genome.wustl.edu	37	2	149240744	149240744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018328.4	+1	reviewed	p.T862A	1.000	233	0%	278	32%	2	50%	unknown(0)	tolerated(0.24)	-	NULL
LYPD6B	130576	genome.wustl.edu	37	2	150064911	150064911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177964.3	+1	provisional	p.K105E	0.996	110	0%	93	22.6%	12	75%	possibly_damaging(0.786)	tolerated(0.13)	deleterious(0.547)	HMMSmart_LU,superfamily_SSF57302
RBM43	375287	genome.wustl.edu	37	2	152107541	152107541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198557.2	-1	validated	p.S318L	0.000	343	0%	311	31.8%	0	-	benign(0.004)	tolerated(0.36)	neutral(0.020)	NULL
TNFAIP6	7130	genome.wustl.edu	37	2	152226654	152226654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007115.2	+1	reviewed	p.R172H	0.990	248	0%	211	35.5%	21	0%	probably_damaging(0.982)	tolerated(0.07)	deleterious(0.746)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
RIF1	55183	genome.wustl.edu	37	2	152317796	152317796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018151.4	+1	reviewed	p.T1074A	1.000	200	0%	169	29.6%	3	66.6%	benign(0.013)	deleterious(0.01)	neutral(0.406)	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152352870	152352870	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004543.4	-1	reviewed	p.E6280*	1.000	30	0%	25	40%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152468789	152468789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004543.4	-1	reviewed	p.R3663C	1.000	162	0%	127	29.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152486108	152486108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004543.4	-1	reviewed	p.R3016Q	0.886	156	0%	130	30%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152507274	152507274	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004543.4	-1	reviewed	p.K2347	1.000	394	0%	343	16.3%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152522894	152522894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004543.4	-1	reviewed	p.E1581K	1.000	90	1.1%	91	40.7%	0	-	probably_damaging(0.986)	tolerated(0.36)	neutral(0.455)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152566244	152566244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004543.4	-1	reviewed	p.D321Y	1.000	40	0%	27	22.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Nebulin
GALNT13	114805	genome.wustl.edu	37	2	155099387	155099387	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052917.2	+1	validated	p.E219*	1.000	50	0%	43	23.3%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GPD2	2820	genome.wustl.edu	37	2	157414015	157414015	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000408.4	+1	reviewed	p.T362	0.032	119	0%	86	39.5%	7	57.1%	-	-	-	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
GALNT5	11227	genome.wustl.edu	37	2	158157422	158157422	+	Nonsense_Mutation	SNP	C	C	T	rs187784514	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014568.1	+1	provisional	p.R784*	1.000	95	0%	82	34.1%	0	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
CCDC148	130940	genome.wustl.edu	37	2	159033086	159033086	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138803.3	-1	validated	p.E526*	1.000	116	0%	85	30.6%	0	-	-	-	-	NULL
CCDC148	130940	genome.wustl.edu	37	2	159035414	159035414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138803.3	-1	validated	p.R489W	0.970	179	0%	131	28.2%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
CCDC148	130940	genome.wustl.edu	37	2	159035440	159035440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138803.3	-1	validated	p.A480V	0.317	175	0%	125	27.2%	1	100%	benign(0.001)	tolerated(0.66)	neutral(0.003)	NULL
PKP4	8502	genome.wustl.edu	37	2	159499085	159499085	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003628.3	+1	reviewed	p.R595*	1.000	152	0%	150	30%	10	0%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PKP4	8502	genome.wustl.edu	37	2	159522976	159522976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003628.3	+1	reviewed	p.L877I	1.000	340	0%	301	35.9%	9	22.2%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
WDSUB1	151525	genome.wustl.edu	37	2	160139481	160139481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128212.1	-1	validated	p.I34L	0.071	216	0%	193	50.3%	4	0%	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MARCH7	64844	genome.wustl.edu	37	2	160604691	160604691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022826.2	+1	validated	p.R297Q	1.000	115	0%	144	22.2%	11	54.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LY75	4065	genome.wustl.edu	37	2	160661610	160661610	+	Missense_Mutation	SNP	C	C	T	rs34034503	byCluster;byFrequency;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002349.2	-1	validated	p.R1705Q	1.000	81	0%	88	34.1%	1	0%	probably_damaging(0.973)	deleterious(0.04)	deleterious(0.764)	NULL
LY75	4065	genome.wustl.edu	37	2	160746860	160746860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002349.2	-1	validated	p.K222N	0.998	154	0%	131	26%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160873203	160873203	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007366.3	-1	validated	p.K491N	0.983	370	0%	315	31.1%	0	-	possibly_damaging(0.829)	deleterious(0.05)	deleterious(0.660)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ITGB6	3694	genome.wustl.edu	37	2	160968663	160968663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000888.3	-1	provisional	p.E677*	1.000	203	0%	161	29.2%	32	0%	-	-	-	HMMPfam_Integrin_B_tail,superfamily_Integrin beta tail domain
TBR1	10716	genome.wustl.edu	37	2	162274306	162274306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006593.2	+1	reviewed	p.W271L	1.000	189	0%	135	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
FAP	2191	genome.wustl.edu	37	2	163044874	163044874	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004460.2	-1	reviewed	e20-1	1.000	163	0%	156	21.8%	0	-	-	-	-	-
IFIH1	64135	genome.wustl.edu	37	2	163137871	163137871	+	Silent	SNP	C	C	T	rs12479043	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022168.2	-1	reviewed	p.T497	0.002	91	0%	107	37.4%	6	33.3%	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNH7	90134	genome.wustl.edu	37	2	163253366	163253366	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033272.2	-1	reviewed	p.L833	1.000	143	0%	106	27.4%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
GRB14	2888	genome.wustl.edu	37	2	165383625	165383625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004490.2	-1	reviewed	p.E168K	1.000	142	0%	115	28.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RA,HMMSmart_RA
COBLL1	22837	genome.wustl.edu	37	2	165578688	165578688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014900.3	-1	validated	p.P298L	0.999	101	0%	94	33%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cobl
SLC38A11	151258	genome.wustl.edu	37	2	165765232	165765232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173512.1	-1	provisional	p.I260S	0.131	100	1%	97	14.4%	0	-	benign(0.009)	tolerated(0.12)	neutral(0.261)	HMMPfam_Aa_trans
SLC38A11	151258	genome.wustl.edu	37	2	165768194	165768194	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173512.1	-1	provisional	p.G227	0.010	96	0%	90	28.9%	0	-	-	-	-	HMMPfam_Aa_trans
SLC38A11	151258	genome.wustl.edu	37	2	165793879	165793879	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173512.1	-1	provisional	p.I122L	0.062	188	0%	164	29.9%	0	-	benign(0)	tolerated(0.93)	-	HMMPfam_Aa_trans
SCN3A	6328	genome.wustl.edu	37	2	165986649	165986649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006922.3	-1	reviewed	p.Y908C	1.000	325	0%	289	17.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165997297	165997297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006922.3	-1	reviewed	p.A628V	1.000	126	0%	117	35.9%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
SCN3A	6328	genome.wustl.edu	37	2	166003509	166003509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006922.3	-1	reviewed	p.D471Y	1.000	136	0%	135	35.6%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166164357	166164357	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040142.1	+1	reviewed	e3-1	1.000	386	0%	302	33.1%	0	-	-	-	-	-
SCN2A	6326	genome.wustl.edu	37	2	166165182	166165182	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040142.1	+1	reviewed	p.T161	0.999	217	0%	151	33.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166201304	166201304	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040142.1	+1	reviewed	p.I934	0.999	370	0%	451	28.4%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166229751	166229751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040142.1	+1	reviewed	p.L1289S	1.000	194	0%	150	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CSRNP3	80034	genome.wustl.edu	37	2	166536078	166536078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024969.3	+1	validated	p.N525D	0.992	331	0%	320	35.9%	2	0%	benign(0.014)	deleterious(0.02)	neutral(0.384)	NULL
TTC21B	79809	genome.wustl.edu	37	2	166747352	166747352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024753.3	-1	validated	p.L1033I	1.000	70	0%	83	34.9%	8	37.5%	benign(0.067)	tolerated(0.47)	neutral(0.015)	HMMSmart_SM00028,superfamily_TPR-like
SCN1A	6323	genome.wustl.edu	37	2	166847928	166847928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006920.4	-1	reviewed	p.L1942F	0.999	158	0%	183	10.4%	0	-	possibly_damaging(0.561)	tolerated(0.55)	neutral(0.199)	NULL
SCN1A	6323	genome.wustl.edu	37	2	166852557	166852557	+	Missense_Mutation	SNP	G	G	A	rs139300715		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006920.4	-1	reviewed	p.S1505L	1.000	153	0%	120	34.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SSF81324
SCN9A	6335	genome.wustl.edu	37	2	167160829	167160829	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002977.3	-1	reviewed	p.E203*	1.000	97	0%	76	25%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167168168	167168168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002977.3	-1	reviewed	p.K33N	1.000	240	0%	198	30.3%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
SCN7A	6332	genome.wustl.edu	37	2	167288882	167288882	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002976.2	-1	validated	p.E846	0.977	336	0%	244	30.3%	0	-	-	-	-	HMMPfam_Na_trans_assoc
SCN7A	6332	genome.wustl.edu	37	2	167322343	167322343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002976.2	-1	validated	p.E273D	0.986	210	0%	213	26.3%	0	-	benign(0.034)	tolerated(0.93)	neutral(0.002)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	167760391	167760391	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152381.4	+1	validated	p.Y133	0.000	115	0%	116	25%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168100145	168100145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152381.4	+1	validated	p.S748L	0.001	171	0%	174	20.7%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168101663	168101663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152381.4	+1	validated	p.S1254I	0.052	393	0%	376	17%	0	-	possibly_damaging(0.816)	deleterious(0.01)	deleterious(0.714)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168102117	168102117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152381.4	+1	validated	p.N1405K	0.000	303	0%	254	29.9%	0	-	benign(0.055)	tolerated(0.37)	neutral(0.022)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168103610	168103610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152381.4	+1	validated	p.E1903G	1.000	343	0%	321	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168105293	168105293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152381.4	+1	validated	p.K2464T	0.053	401	0.2%	359	30.6%	0	-	possibly_damaging(0.777)	deleterious(0)	deleterious(0.734)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168106476	168106476	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152381.4	+1	validated	p.I2858	0.000	494	0%	417	31.4%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168115609	168115609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079810.2	+1	validated	p.E851D	0.078	140	0%	184	27.7%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
B3GALT1	8708	genome.wustl.edu	37	2	168726445	168726445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020981.2	+1	reviewed	p.R299Q	1.000	90	0%	76	31.6%	0	-	benign(0.133)	tolerated(0.29)	neutral(0.040)	NULL
STK39	27347	genome.wustl.edu	37	2	168986255	168986255	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013233.2	-1	reviewed	p.E330*	1.000	358	0%	378	28.3%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STK39	27347	genome.wustl.edu	37	2	168997201	168997201	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013233.2	-1	reviewed	p.F232	1.000	167	0%	136	25.7%	4	75%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STK39	27347	genome.wustl.edu	37	2	169018330	169018330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013233.2	-1	reviewed	p.L199I	1.000	112	0%	75	26.7%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
G6PC2	57818	genome.wustl.edu	37	2	169761041	169761041	+	Missense_Mutation	SNP	G	G	A	rs191279338	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021176.2	+1	reviewed	p.A119T	0.980	323	0%	262	32.4%	0	-	unknown(0)	-	-	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
ABCB11	8647	genome.wustl.edu	37	2	169787221	169787221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003742.2	-1	reviewed	p.S1122N	1.000	77	0%	93	30.1%	0	-	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB11	8647	genome.wustl.edu	37	2	169851943	169851943	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003742.2	-1	reviewed	p.K176T	0.999	168	0%	140	35.7%	0	-	possibly_damaging(0.839)	tolerated(0.14)	deleterious(0.570)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DHRS9	10170	genome.wustl.edu	37	2	169938167	169938167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142270.1	+1	validated	p.D26Y	0.059	251	0.4%	197	32%	4	0%	possibly_damaging(0.816)	tolerated(0.08)	deleterious(0.609)	NULL
LRP2	4036	genome.wustl.edu	37	2	169985309	169985309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.A4611V	0.000	286	0.3%	186	24.7%	0	-	benign(0)	tolerated(1)	-	NULL
LRP2	4036	genome.wustl.edu	37	2	170003307	170003307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.E4251D	0.996	130	0%	102	28.4%	0	-	benign(0.128)	tolerated(0.15)	neutral(0.252)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170012868	170012868	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.N4023H	0.997	177	0%	209	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
LRP2	4036	genome.wustl.edu	37	2	170013974	170013974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.E3976K	1.000	122	0%	104	28.8%	0	-	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_EGF
LRP2	4036	genome.wustl.edu	37	2	170022469	170022469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.D3911Y	1.000	365	0%	307	12.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170032981	170032981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.G3504V	0.000	44	0%	52	26.9%	0	-	benign(0.282)	tolerated(0.07)	neutral(0.405)	HMMSmart_EGF
LRP2	4036	genome.wustl.edu	37	2	170032999	170032999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.R3498H	0.718	48	0%	47	40.4%	0	-	benign(0.005)	tolerated(0.39)	neutral(0.016)	HMMSmart_EGF
LRP2	4036	genome.wustl.edu	37	2	170042517	170042517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.C3114Y	1.000	124	0%	138	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_EGF,superfamily_SSF57196
LRP2	4036	genome.wustl.edu	37	2	170044741	170044741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.D3023N	1.000	160	0.6%	201	20.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170062974	170062974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.R2419I	0.016	169	0%	152	26.3%	0	-	probably_damaging(0.955)	tolerated(0.32)	neutral(0.423)	HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170083034	170083034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.E1764D	0.897	163	0%	147	25.9%	0	-	benign(0.019)	tolerated(0.7)	neutral(0.003)	superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170101424	170101424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.S1070L	0.005	193	0%	179	34.1%	0	-	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170112623	170112623	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004525.2	-1	reviewed	p.I921	0.969	208	0%	146	28.8%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
KBTBD10	10324	genome.wustl.edu	37	2	170366982	170366982	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006063.2	+1	validated	p.F232V	1.000	118	0%	125	36%	0	-	benign(0.009)	tolerated(0.08)	neutral(0.300)	HMMPfam_BACK
FASTKD1	79675	genome.wustl.edu	37	2	170402874	170402874	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024622.3	-1	validated	p.E519*	0.999	146	0%	118	12.7%	8	0%	-	-	-	NULL
FASTKD1	79675	genome.wustl.edu	37	2	170416995	170416995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024622.3	-1	validated	p.K291N	0.985	217	0%	153	30.1%	3	0%	benign(0.002)	tolerated(0.29)	neutral(0.029)	NULL
FASTKD1	79675	genome.wustl.edu	37	2	170417251	170417251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024622.3	-1	validated	p.R206Q	0.000	77	0%	72	33.3%	6	50%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
PPIG	9360	genome.wustl.edu	37	2	170488365	170488365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004792.2	+1	validated	p.R284I	1.000	303	0%	273	27.8%	15	20%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PPIG	9360	genome.wustl.edu	37	2	170493296	170493296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004792.2	+1	validated	p.D510Y	1.000	128	0%	178	34.3%	25	56%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
PPIG	9360	genome.wustl.edu	37	2	170493913	170493913	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004792.2	+1	validated	p.R715	0.994	96	0%	139	13.7%	11	18.1%	-	-	-	NULL
C2orf77	129881	genome.wustl.edu	37	2	170506892	170506892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085447.1	-1	validated	p.D367Y	0.788	98	0%	86	32.6%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
SSB	6741	genome.wustl.edu	37	2	170662012	170662012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003142.3	+1	provisional	p.R32Q	1.000	84	0%	84	23.8%	52	7.6%	possibly_damaging(0.776)	deleterious(0.04)	deleterious(0.638)	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
SSB	6741	genome.wustl.edu	37	2	170665010	170665010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003142.3	+1	provisional	p.K191N	1.000	87	0%	109	31.2%	134	41.7%	benign(0.041)	tolerated(0.15)	neutral(0.243)	superfamily_RNA-binding domain RBD
SSB	6741	genome.wustl.edu	37	2	170667781	170667781	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003142.3	+1	provisional	p.T362	0.893	90	0%	83	37.3%	115	39.1%	-	-	-	NULL
MYO3B	140469	genome.wustl.edu	37	2	171258191	171258191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138995.3	+1	validated	p.E707K	1.000	126	0%	116	31.9%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO3B	140469	genome.wustl.edu	37	2	171259406	171259406	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138995.3	+1	validated	p.F726	0.942	320	0.3%	226	31.4%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TLK1	9874	genome.wustl.edu	37	2	171939347	171939347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012290.4	-1	validated	p.E92K	1.000	415	0.2%	347	17%	13	15.3%	possibly_damaging(0.808)	deleterious(0.02)	deleterious(0.687)	NULL
SLC25A12	8604	genome.wustl.edu	37	2	172701007	172701007	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003705.3	-1	reviewed	p.E113*	1.000	159	0%	171	41.5%	3	0%	-	-	-	HMMSmart_EFh,superfamily_SSF47473
SLC25A12	8604	genome.wustl.edu	37	2	172749746	172749746	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003705.3	-1	reviewed	p.D12A	1.000	116	0%	97	33%	5	0%	benign(0.017)	tolerated(0.36)	neutral(0.021)	superfamily_SSF47473
LOC100287337	100287337	genome.wustl.edu	37	2	172965686	172965686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342279.1	+1	model	p.D248Y	0.000	31	0%	21	38.1%	0	-	-	-	-	NULL
DLX2	1746	genome.wustl.edu	37	2	172966875	172966875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004405.3	-1	reviewed	p.N131S	1.000	30	0%	23	17.4%	0	-	benign(0.001)	tolerated(0.82)	neutral(0.001)	NULL
RAPGEF4	11069	genome.wustl.edu	37	2	173825908	173825908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007023.3	+1	validated	p.R217Q	1.000	294	0%	183	33.9%	1	0%	probably_damaging(0.987)	tolerated(0.65)	neutral(0.440)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
ZAK	51776	genome.wustl.edu	37	2	174104149	174104149	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016653.2	+1	reviewed	p.P428	0.986	95	0%	88	33%	3	66.6%	-	-	-	NULL
CDCA7	83879	genome.wustl.edu	37	2	174231876	174231876	+	Splice_Site	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031942.4	+1	reviewed	e9-2	1.000	132	0%	128	32.8%	0	-	-	-	-	-
LOC643997	643997	genome.wustl.edu	37	2	174350598	174350598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_292963.7	-1	model	p.E165K	0.765	165	0%	173	32.9%	0	-	-	-	-	superfamily_Cyclophilin-like
SP3	6670	genome.wustl.edu	37	2	174820187	174820187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003111.4	-1	reviewed	p.Q351H	0.997	142	0%	139	24.5%	29	41.3%	probably_damaging(0.977)	tolerated(0.37)	neutral(0.438)	NULL
OLA1	29789	genome.wustl.edu	37	2	174988352	174988352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013341.3	-1	validated	p.R201C	1.000	166	0%	158	27.8%	119	44.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR155	151556	genome.wustl.edu	37	2	175301078	175301078	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033045.2	-1	validated	p.V793	0.043	154	0.6%	119	37%	0	-	-	-	-	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
GPR155	151556	genome.wustl.edu	37	2	175326196	175326196	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033045.2	-1	validated	p.V498	0.991	310	0%	208	26.9%	0	-	-	-	-	NULL
GPR155	151556	genome.wustl.edu	37	2	175337797	175337797	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033045.2	-1	validated	p.F252	1.000	173	0%	176	30.7%	0	-	-	-	-	HMMPfam_Mem_trans
LOC100133109	100133109	genome.wustl.edu	37	2	175584661	175584661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001716442.2	-1	model	p.A106V	1.000	50	0%	57	15.8%	126	0%	-	-	-	NULL
EVX2	344191	genome.wustl.edu	37	2	176948482	176948482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080458.1	-1	reviewed	p.E8A	1.000	120	0%	88	30.7%	0	-	probably_damaging(0.977)	tolerated(0.13)	deleterious(0.671)	NULL
EVX2	344191	genome.wustl.edu	37	2	176948494	176948494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080458.1	-1	reviewed	p.R4I	1.000	109	0%	77	32.5%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
HOXD1	3231	genome.wustl.edu	37	2	177054173	177054173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024501.1	+1	reviewed	p.S215F	0.999	30	0%	24	25%	0	-	possibly_damaging(0.448)	deleterious(0.02)	deleterious(0.529)	NULL
AGPS	8540	genome.wustl.edu	37	2	178310273	178310273	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003659.3	+1	reviewed	e8-1	1.000	207	0%	134	26.9%	0	-	-	-	-	-
AGPS	8540	genome.wustl.edu	37	2	178346807	178346807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003659.3	+1	reviewed	p.E376*	1.000	193	0%	147	32%	6	0%	-	-	-	superfamily_FAD-linked oxidases C-terminal domain,superfamily_FAD-binding domain
TTC30B	150737	genome.wustl.edu	37	2	178416126	178416126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152517.2	-1	validated	p.D456N	1.000	649	0.2%	463	18.6%	7	28.5%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00028,superfamily_TPR-like
TTC30B	150737	genome.wustl.edu	37	2	178416196	178416196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152517.2	-1	validated	p.K432N	0.999	663	0%	500	21.8%	2	0%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMSmart_SM00028,superfamily_TPR-like
PDE11A	50940	genome.wustl.edu	37	2	178769868	178769868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016953.3	-1	reviewed	p.A373V	1.000	121	0%	88	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00065,superfamily_GAF domain-like
OSBPL6	114880	genome.wustl.edu	37	2	179197752	179197752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145739.1	+1	reviewed	p.S193Y	0.989	191	0%	142	13.4%	0	-	benign(0.123)	tolerated(0.3)	neutral(0.038)	NULL
OSBPL6	114880	genome.wustl.edu	37	2	179247784	179247784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145739.1	+1	reviewed	p.R556Q	1.000	124	0%	116	30.2%	0	-	possibly_damaging(0.867)	tolerated(0.59)	neutral(0.341)	HMMPfam_Oxysterol_BP
PRKRA	8575	genome.wustl.edu	37	2	179300964	179300964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003690.4	-1	reviewed	p.R231I	1.000	295	0%	285	29.5%	27	22.2%	possibly_damaging(0.563)	tolerated(0.25)	neutral(0.230)	superfamily_dsRNA-binding domain-like
DFNB59	494513	genome.wustl.edu	37	2	179318141	179318141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042702.3	+1	reviewed	p.F2C	1.000	36	0%	32	21.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gasdermin
DFNB59	494513	genome.wustl.edu	37	2	179318300	179318300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042702.3	+1	reviewed	p.P55H	1.000	37	0%	38	31.6%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Gasdermin
FKBP7	51661	genome.wustl.edu	37	2	179343185	179343185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181342.2	-1	reviewed	p.F14L	0.977	159	0%	133	12%	4	0%	benign(0.009)	tolerated(0.18)	neutral(0.057)	NULL
TTN	7273	genome.wustl.edu	37	2	179393145	179393145	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.S33175A	0.999	122	0%	93	25.8%	0	-	benign(0.006)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179395644	179395644	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133378.4	-1	reviewed	p.E32665*	0.766	299	0%	254	33.1%	0	-	benign(0)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179398749	179398749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.D31628G	1.000	181	0%	166	30.1%	0	-	benign(0.087)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179400750	179400750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.Q31005R	1.000	162	0%	121	29.8%	0	-	benign(0.01)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179404920	179404920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.R30088Q	1.000	383	0%	303	30.4%	0	-	probably_damaging(0.99)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179412801	179412801	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133378.4	-1	reviewed	p.S28616F	1.000	157	0%	186	34.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179413390	179413390	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133378.4	-1	reviewed	p.E28420*	1.000	222	0%	197	26.9%	0	-	probably_damaging(0.995)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179416837	179416837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.K27694E	1.000	236	0%	190	28.9%	0	-	probably_damaging(0.978)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179417770	179417770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133378.4	-1	reviewed	p.C27384*	0.955	68	0%	70	35.7%	0	-	possibly_damaging(0.9)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179418322	179418322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.V27234F	1.000	188	0%	143	37.8%	0	-	probably_damaging(0.963)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179423351	179423351	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133378.4	-1	reviewed	p.H26377R	1.000	74	0%	62	33.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179424449	179424449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.T26234A	1.000	265	0%	261	25.3%	0	-	possibly_damaging(0.656)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179430641	179430641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.T24170A	1.000	267	0%	300	31.7%	0	-	benign(0.311)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179435326	179435326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.D22608G	1.000	69	0%	95	32.6%	0	-	possibly_damaging(0.888)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179435849	179435849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.R22434C	1.000	151	0%	174	33.3%	0	-	probably_damaging(0.998)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179436734	179436734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.A22139T	1.000	75	0%	79	40.5%	0	-	possibly_damaging(0.755)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179436919	179436919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.R22077Q	1.000	77	0%	64	26.6%	0	-	possibly_damaging(0.916)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179441978	179441978	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133378.4	-1	reviewed	p.R20460Q	0.674	68	0%	64	21.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179446396	179446396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.S19630F	0.998	36	0%	33	33.3%	0	-	possibly_damaging(0.847)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179447704	179447704	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133378.4	-1	reviewed	p.V19374A	0.999	51	0%	47	29.8%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179453374	179453374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.Q18456H	1.000	265	0%	257	35.8%	0	-	possibly_damaging(0.951)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179459190	179459190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.Y16774C	1.000	108	0%	109	26.6%	0	-	benign(0.127)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179463909	179463909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.L16301I	1.000	392	0%	384	28.4%	0	-	possibly_damaging(0.539)	-	-	HMMPfam_fn3
TTN	7273	genome.wustl.edu	37	2	179467274	179467274	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.T15717	0.998	51	0%	41	36.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179469563	179469563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.T15517A	0.992	202	0%	188	27.7%	0	-	benign(0.099)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179476304	179476304	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.I14316	0.789	212	0%	197	32.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179480376	179480376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.T13583N	1.000	368	0%	336	16.1%	0	-	possibly_damaging(0.539)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179481733	179481733	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.P13393	0.999	226	0%	261	32.2%	0	-	-	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179485207	179485207	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.V12779	0.031	172	0%	185	34.1%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179496966	179496966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.S11984L	0.996	26	0%	27	44.4%	0	-	benign(0.29)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179496982	179496982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.E11979K	1.000	21	0%	26	34.6%	0	-	benign(0.099)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179523048	179523048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000392423	-1	known	p.K774N	0.174	180	0%	177	21.5%	0	-	unknown(0)	tolerated(0.2)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179523194	179523194	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000392423	-1	known	e27+1	0.352	316	0%	292	17.5%	0	-	-	-	-	-
TTN	7273	genome.wustl.edu	37	2	179527747	179527747	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.E10507*	0.020	160	0%	165	7.3%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179536961	179536961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.A10354V	0.994	90	0%	90	33.3%	0	-	unknown(0)	deleterious(0)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179546457	179546457	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.K9791Q	1.000	108	0%	129	24.8%	0	-	unknown(0)	tolerated(0.22)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179549099	179549099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.L9650I	0.999	56	0%	57	29.8%	0	-	unknown(0)	-	-	HMMPfam_PPAK
TTN	7273	genome.wustl.edu	37	2	179552941	179552941	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.E9492	1.000	216	0%	205	25.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179569635	179569635	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.S8644*	1.000	312	0%	280	31.8%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179572447	179572447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.S8372F	0.997	139	0%	107	27.1%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179577284	179577284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.S7878I	1.000	96	0%	103	39.8%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179582279	179582279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.A7197V	0.788	69	0%	65	23.1%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179582867	179582867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.G7045E	1.000	176	0%	197	36%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179585804	179585804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.E6404K	1.000	187	0%	185	38.4%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179585824	179585824	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.S6397*	0.000	182	0%	182	29.7%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179587600	179587600	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.L6098	1.000	91	0%	83	26.5%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179587888	179587888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.E6038D	0.995	104	0%	105	34.3%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179588030	179588030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.R5991I	0.695	110	0%	107	10.3%	0	-	unknown(0)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179594439	179594439	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.R4937*	1.000	317	0%	289	32.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179594650	179594650	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.K4866	1.000	71	0%	99	29.3%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179595024	179595024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.V4791M	1.000	77	0%	65	18.5%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179595482	179595482	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.K4682	1.000	264	0%	288	31.2%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179597313	179597313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.S4248Y	0.999	90	0%	88	31.8%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179598567	179598567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.Q3939H	0.943	174	0%	185	31.9%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179600376	179600376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.D3689Y	1.000	76	0%	76	30.3%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179603065	179603065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356127	-1	known	p.K3461N	1.000	76	0%	48	29.2%	0	-	benign(0.29)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179611780	179611780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.R5116I	0.000	210	0%	154	27.9%	0	-	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
TTN	7273	genome.wustl.edu	37	2	179613329	179613329	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.E4600*	0.601	390	0.3%	280	33.6%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179613548	179613548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.N4527D	0.000	239	0%	199	30.2%	0	-	benign(0.042)	deleterious(0)	neutral(0.447)	NULL
TTN	7273	genome.wustl.edu	37	2	179615146	179615146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.S3994L	0.216	177	0.6%	156	28.8%	0	-	benign(0.064)	tolerated(0.74)	neutral(0.005)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179615363	179615363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.E3922K	0.007	113	0%	110	37.3%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
TTN	7273	genome.wustl.edu	37	2	179623847	179623847	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.F3389	1.000	153	0%	125	27.2%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179628954	179628954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.V3355A	0.064	98	0%	81	24.7%	0	-	benign(0.099)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179632532	179632532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.V3142A	1.000	244	0%	227	29.5%	0	-	possibly_damaging(0.737)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179640740	179640740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133379.3	-1	reviewed	p.V1951I	0.000	432	0%	372	24.2%	0	-	possibly_damaging(0.539)	-	-	NULL
CCDC141	285025	genome.wustl.edu	37	2	179702464	179702464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173648.2	-1	provisional	p.V586G	0.000	182	0%	168	32.7%	0	-	benign(0.004)	deleterious(0.05)	neutral(0.345)	NULL
CCDC141	285025	genome.wustl.edu	37	2	179742640	179742640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000409284	-1	known	p.K650N	0.997	182	0%	179	31.8%	0	-	unknown(0)	-	-	NULL
SESTD1	91404	genome.wustl.edu	37	2	179981457	179981457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178123.4	-1	validated	p.D529N	1.000	280	0%	207	31.4%	16	43.7%	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	HMMSmart_SPEC,superfamily_Spectrin
ZNF385B	151126	genome.wustl.edu	37	2	180311386	180311386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152520.4	-1	validated	p.S261Y	0.364	187	0%	154	29.9%	0	-	benign(0.127)	tolerated(0.05)	neutral(0.356)	NULL
ZNF385B	151126	genome.wustl.edu	37	2	180409606	180409606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152520.4	-1	validated	p.S115Y	1.000	282	0%	240	15%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
LOC100131482	100131482	genome.wustl.edu	37	2	180679148	180679148	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001722616.1	+1	model	p.V57	1.000	91	0%	77	28.6%	0	-	-	-	-	HMMPfam_DIM1,superfamily_Thioredoxin-like
CWC22	57703	genome.wustl.edu	37	2	180815606	180815606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020943.2	-1	validated	p.R622I	1.000	63	0%	78	35.9%	7	28.5%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
ITGA4	3676	genome.wustl.edu	37	2	182344868	182344868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000885.4	+1	reviewed	p.L210S	1.000	248	0%	178	30.3%	0	-	possibly_damaging(0.897)	deleterious(0.02)	deleterious(0.737)	superfamily_Integrin alpha N-terminal domain
ITGA4	3676	genome.wustl.edu	37	2	182346351	182346351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000885.4	+1	reviewed	p.R261W	0.961	171	0%	105	28.6%	1	0%	benign(0.003)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
SSFA2	6744	genome.wustl.edu	37	2	182780502	182780502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130445.1	+1	validated	p.R712H	1.000	253	0%	319	14.1%	35	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDE1A	5136	genome.wustl.edu	37	2	183066481	183066481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005019.3	-1	validated	p.S329Y	1.000	205	0%	175	33.7%	4	0%	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE1A	5136	genome.wustl.edu	37	2	183094750	183094750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005019.3	-1	validated	p.L236I	1.000	129	0%	108	34.3%	3	0%	benign(0.189)	tolerated(0.36)	neutral(0.038)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE1A	5136	genome.wustl.edu	37	2	183105012	183105012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005019.3	-1	validated	p.L75M	0.420	245	0%	236	30.5%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_PDEase_I_N
FRZB	2487	genome.wustl.edu	37	2	183699601	183699601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001463.3	-1	reviewed	p.S318L	0.058	174	0.6%	185	32.4%	7	0%	benign(0.026)	deleterious(0)	neutral(0.446)	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185731142	185731142	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194250.1	+1	provisional	p.L53R	1.000	127	0%	121	24.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185801972	185801972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194250.1	+1	provisional	p.R617C	0.000	558	0%	435	26.9%	0	-	possibly_damaging(0.454)	deleterious(0.04)	deleterious(0.497)	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185802508	185802508	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194250.1	+1	provisional	p.F795L	0.000	390	0%	349	35.2%	0	-	benign(0.026)	tolerated(0.15)	neutral(0.242)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186669721	186669721	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000424728	+1	known	p.E5230*	1.000	51	0%	72	26.4%	0	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671430	186671430	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000424728	+1	known	p.I5799	0.612	164	0%	172	32.6%	0	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671860	186671860	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000424728	+1	known	p.E5943*	0.045	190	0%	230	39.1%	0	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186673852	186673852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000424728	+1	known	p.P6607S	0.987	108	0%	99	26.3%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ZC3H15	55854	genome.wustl.edu	37	2	187373395	187373395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018471.2	+1	validated	p.L406I	1.000	125	0%	80	43.8%	73	35.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ITGAV	3685	genome.wustl.edu	37	2	187503027	187503027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002210.3	+1	reviewed	p.A276T	1.000	92	0%	79	20.3%	4	100%	benign(0.223)	tolerated(0.09)	neutral(0.319)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ITGAV	3685	genome.wustl.edu	37	2	187514596	187514596	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002210.3	+1	reviewed	p.R461*	1.000	110	0%	97	38.1%	14	7.1%	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
FAM171B	165215	genome.wustl.edu	37	2	187605028	187605028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177454.3	+1	validated	p.E104D	0.987	132	0%	74	28.4%	0	-	benign(0.32)	tolerated(0.21)	neutral(0.144)	HMMPfam_UPF0560
CALCRL	10203	genome.wustl.edu	37	2	188245205	188245205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005795.4	-1	validated	p.E133K	0.594	327	0%	221	31.7%	6	0%	benign(0.408)	tolerated(0.1)	neutral(0.418)	HMMSmart_HormR,superfamily_SSF111418
TFPI	7035	genome.wustl.edu	37	2	188332600	188332600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006287.4	-1	reviewed	p.E230K	0.206	192	0.5%	171	24.6%	7	0%	possibly_damaging(0.544)	deleterious(0.03)	deleterious(0.549)	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,superfamily_BPTI-like
TFPI	7035	genome.wustl.edu	37	2	188368393	188368393	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006287.4	-1	reviewed	p.E35*	0.691	217	0%	162	28.4%	8	0%	-	-	-	NULL
ANKAR	150709	genome.wustl.edu	37	2	190559719	190559719	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144708.3	+1	validated	p.I369	0.058	58	0%	54	42.6%	0	-	-	-	-	superfamily_Ankyrin repeat
PMS1	5378	genome.wustl.edu	37	2	190719217	190719217	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000534.4	+1	reviewed	p.L407V	0.822	210	0%	213	32.4%	5	40%	benign(0.02)	deleterious(0.02)	neutral(0.384)	NULL
STAT1	6772	genome.wustl.edu	37	2	191841713	191841713	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007315.3	-1	reviewed	p.E638*	1.000	186	0%	139	27.3%	62	0%	-	-	-	HMMPfam_SH2,superfamily_SH2 domain
STAT1	6772	genome.wustl.edu	37	2	191841736	191841736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007315.3	-1	reviewed	p.A630V	1.000	163	0%	124	33.1%	59	32.2%	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	HMMPfam_SH2,superfamily_SH2 domain
STAT4	6775	genome.wustl.edu	37	2	191922753	191922753	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003151.2	-1	reviewed	p.F399	1.000	172	0%	192	24%	1	0%	-	-	-	superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind
SLC39A10	57181	genome.wustl.edu	37	2	196545453	196545453	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127257.1	+1	validated	p.P229	0.011	221	0%	194	27.3%	6	50%	-	-	-	NULL
SLC39A10	57181	genome.wustl.edu	37	2	196548480	196548480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127257.1	+1	validated	p.S356P	1.000	335	0%	245	26.5%	3	0%	possibly_damaging(0.813)	deleterious(0.01)	deleterious(0.713)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196659101	196659101	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018897.2	-1	validated	p.P3559	0.072	314	0%	297	30.3%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196673459	196673459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018897.2	-1	validated	p.R3344C	1.000	253	0%	209	27.8%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196681533	196681533	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018897.2	-1	validated	p.K3194Q	0.770	225	0%	197	26.9%	0	-	benign(0.042)	tolerated(0.43)	neutral(0.016)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196709789	196709789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018897.2	-1	validated	p.R2961Q	0.995	79	0%	56	25%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196749422	196749422	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018897.2	-1	validated	p.R1884*	0.000	172	0%	115	21.7%	0	-	-	-	-	NULL
HECW2	57520	genome.wustl.edu	37	2	197086952	197086952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020760.1	-1	provisional	p.E1377K	1.000	124	0%	113	29.2%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECW2	57520	genome.wustl.edu	37	2	197106879	197106879	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020760.1	-1	provisional	p.F1193	1.000	231	0%	177	27.1%	1	0%	-	-	-	NULL
CCDC150	284992	genome.wustl.edu	37	2	197590746	197590746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080539.1	+1	provisional	p.R827C	0.997	96	0%	55	34.5%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
CCDC150	284992	genome.wustl.edu	37	2	197594039	197594039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080539.1	+1	provisional	p.K893N	1.000	395	0%	309	30.4%	1	0%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197634728	197634728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012086.2	-1	provisional	p.E766K	0.846	101	0%	88	22.7%	18	77.7%	benign(0.01)	tolerated(0.81)	neutral(0.001)	superfamily_TPR-like
GTF3C3	9330	genome.wustl.edu	37	2	197654095	197654095	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012086.2	-1	provisional	e6-2	1.000	78	0%	98	29.6%	0	-	-	-	-	-
PGAP1	80055	genome.wustl.edu	37	2	197708733	197708733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024989.3	-1	validated	p.L802I	0.013	90	0%	64	35.9%	5	20%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
PGAP1	80055	genome.wustl.edu	37	2	197757891	197757891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024989.3	-1	validated	p.N336Y	1.000	157	0%	91	24.2%	1	100%	possibly_damaging(0.915)	tolerated(0.13)	deleterious(0.619)	NULL
ANKRD44	91526	genome.wustl.edu	37	2	197953462	197953462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153697.1	-1	provisional	p.T382M	1.000	231	0%	214	35%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK
HSPD1	3329	genome.wustl.edu	37	2	198353095	198353095	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002156.4	-1	reviewed	p.R446*	1.000	133	0.8%	120	30%	326	7%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase
RFTN2	130132	genome.wustl.edu	37	2	198508990	198508990	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144629.2	-1	validated	p.K110	0.760	62	0%	66	16.7%	0	-	-	-	-	NULL
BOLL	66037	genome.wustl.edu	37	2	198631320	198631320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_197970.2	-1	validated	p.S175F	1.000	61	0%	51	31.4%	0	-	possibly_damaging(0.454)	tolerated(0.07)	neutral(0.468)	NULL
BOLL	66037	genome.wustl.edu	37	2	198636692	198636692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_197970.2	-1	validated	p.P135S	1.000	140	0.7%	121	33.9%	0	-	possibly_damaging(0.825)	tolerated(0.09)	deleterious(0.609)	NULL
PLCL1	5334	genome.wustl.edu	37	2	198950163	198950163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006226.3	+1	validated	p.R543I	0.998	212	0%	177	32.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
PLCL1	5334	genome.wustl.edu	37	2	198950324	198950324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006226.3	+1	validated	p.L597I	1.000	276	0%	237	33.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
SATB2	23314	genome.wustl.edu	37	2	200137190	200137190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015265.3	-1	reviewed	p.S649L	1.000	195	0%	190	31.6%	6	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SATB2	23314	genome.wustl.edu	37	2	200245104	200245104	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015265.3	-1	reviewed	p.E194*	1.000	296	0.3%	251	28.7%	2	50%	-	-	-	NULL
SPATS2L	26010	genome.wustl.edu	37	2	201332030	201332030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100422.1	+1	validated	p.R289C	1.000	151	0%	167	37.1%	38	7.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1387
SPATS2L	26010	genome.wustl.edu	37	2	201337625	201337625	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100422.1	+1	validated	p.H377	0.024	107	0%	101	24.8%	42	7.1%	-	-	-	NULL
SPATS2L	26010	genome.wustl.edu	37	2	201342680	201342680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100422.1	+1	validated	p.L535I	0.994	58	0%	40	47.5%	54	11.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KCTD18	130535	genome.wustl.edu	37	2	201369647	201369647	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152387.2	-1	validated	p.K66Q	1.000	132	0%	103	34%	5	100%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_K_tetra,superfamily_POZ domain
SGOL2	151246	genome.wustl.edu	37	2	201436055	201436055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152524.5	+1	validated	p.L329R	0.302	129	0%	114	34.2%	5	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
SGOL2	151246	genome.wustl.edu	37	2	201436947	201436947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152524.5	+1	validated	p.M626I	0.000	318	0%	277	32.9%	6	66.6%	benign(0.074)	tolerated(0.29)	neutral(0.034)	NULL
ORC2	4999	genome.wustl.edu	37	2	201778130	201778130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006190.3	-1	reviewed	p.S512Y	1.000	109	0%	114	31.6%	21	42.8%	possibly_damaging(0.625)	deleterious(0.05)	deleterious(0.564)	HMMPfam_ORC2
FAM126B	285172	genome.wustl.edu	37	2	201846373	201846373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173822.3	-1	validated	p.R405C	1.000	117	0%	95	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CASP10	843	genome.wustl.edu	37	2	202073854	202073854	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032977.3	+1	reviewed	p.T328	0.000	193	0%	221	31.2%	0	-	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_CASc,superfamily_SSF52129
CASP8	841	genome.wustl.edu	37	2	202137666	202137666	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080125.1	+1	reviewed	e5+1	0.943	238	0%	262	31.3%	0	-	-	-	-	-
ALS2CR12	130540	genome.wustl.edu	37	2	202173902	202173902	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000415745	-1	known	p.S24L	0.005	768	0%	562	31%	0	-	-	-	-	NULL
STRADB	55437	genome.wustl.edu	37	2	202323506	202323506	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018571.5	+1	reviewed	e2-1	1.000	124	0%	101	37.6%	0	-	-	-	-	-
STRADB	55437	genome.wustl.edu	37	2	202344745	202344745	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000392249	+1	known	p.F376L	0.997	201	0%	175	32%	0	-	unknown(0)	-	-	superfamily_Kinase_like
ALS2CR11	151254	genome.wustl.edu	37	2	202400820	202400820	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152525.5	-1	validated	p.N477I	0.000	274	0%	189	27%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ALS2	57679	genome.wustl.edu	37	2	202574622	202574622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020919.3	-1	reviewed	p.R1421Q	1.000	260	0%	214	28.5%	3	33.3%	probably_damaging(0.992)	tolerated(0.09)	deleterious(0.744)	superfamily_VPS9 domain (Pfam 02204)
FZD7	8324	genome.wustl.edu	37	2	202899668	202899668	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003507.1	+1	reviewed	p.F100V	1.000	55	0%	38	31.6%	4	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063
FZD7	8324	genome.wustl.edu	37	2	202900184	202900184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003507.1	+1	reviewed	p.V272I	1.000	64	0%	61	39.3%	4	75%	possibly_damaging(0.944)	tolerated(0.06)	deleterious(0.711)	HMMPfam_Frizzled
NOP58	51602	genome.wustl.edu	37	2	203152394	203152394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015934.3	+1	provisional	p.Y149S	1.000	177	0%	155	20%	67	49.2%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
FAM117B	150864	genome.wustl.edu	37	2	203591001	203591001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173511.3	+1	validated	p.R48K	1.000	150	0%	150	23.3%	2	50%	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	NULL
ICA1L	130026	genome.wustl.edu	37	2	203650654	203650654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138468.4	-1	validated	p.K440N	1.000	120	0%	85	11.8%	0	-	benign(0.071)	tolerated(0.98)	neutral(0.005)	HMMPfam_ICA69
NBEAL1	65065	genome.wustl.edu	37	2	204048101	204048101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114132.1	+1	validated	p.R2203M	1.000	146	0%	129	30.2%	0	-	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
NBEAL1	65065	genome.wustl.edu	37	2	204073899	204073899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114132.1	+1	validated	p.I2518V	1.000	93	0%	117	32.5%	4	25%	benign(0.21)	tolerated(0.53)	neutral(0.028)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CYP20A1	57404	genome.wustl.edu	37	2	204111485	204111485	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177538.2	+1	reviewed	p.N44H	1.000	314	0%	319	28.5%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_p450,superfamily_Cytochrome_P450
ABI2	10152	genome.wustl.edu	37	2	204231627	204231627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005759.4	+1	validated	p.E49*	1.000	137	0%	122	25.4%	4	25%	-	-	-	NULL
PARD3B	117583	genome.wustl.edu	37	2	206480282	206480282	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152526.4	+1	validated	p.P1059	0.053	184	0%	151	32.5%	1	0%	-	-	-	NULL
NRP2	8828	genome.wustl.edu	37	2	206587262	206587262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201266.1	+1	reviewed	p.F165C	1.000	129	0%	144	29.2%	21	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
NRP2	8828	genome.wustl.edu	37	2	206608245	206608245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201266.1	+1	reviewed	p.Y537C	0.983	113	0%	103	40.8%	38	42.1%	probably_damaging(0.971)	deleterious(0.04)	deleterious(0.762)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
ZDBF2	57683	genome.wustl.edu	37	2	207170018	207170018	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020923.1	+1	validated	p.E256*	0.001	81	0%	74	21.6%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207176038	207176038	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020923.1	+1	validated	p.A2262	0.005	54	0%	44	34.1%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207176039	207176039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020923.1	+1	validated	p.K2263Q	0.231	54	0%	43	32.6%	0	-	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	NULL
ADAM23	8745	genome.wustl.edu	37	2	207310163	207310163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003812.2	+1	reviewed	p.R116I	1.000	194	0%	114	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pep_M12B_propep
FASTKD2	22868	genome.wustl.edu	37	2	207632019	207632019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136193.1	+1	reviewed	p.R201H	1.000	170	0%	170	28.8%	39	51.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PTH2R	5746	genome.wustl.edu	37	2	209307125	209307125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005048.2	+1	reviewed	p.V150I	0.001	414	0%	312	29.5%	0	-	benign(0.018)	tolerated(0.63)	neutral(0.004)	HMMPfam_7tm_2,superfamily_SSF111418,superfamily_SSF81321
PTH2R	5746	genome.wustl.edu	37	2	209308223	209308223	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005048.2	+1	reviewed	p.Q220	0.000	273	0.4%	162	25.9%	0	-	-	-	-	HMMPfam_7tm_2,superfamily_SSF81321
MAP2	4133	genome.wustl.edu	37	2	210559864	210559864	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002374.3	+1	reviewed	p.F990	0.000	172	0%	187	27.3%	1	100%	-	-	-	HMMPfam_MAP2_projctn
CPS1	1373	genome.wustl.edu	37	2	211469942	211469942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122633.1	+1	reviewed	p.E657D	1.000	85	0%	111	23.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
CPS1	1373	genome.wustl.edu	37	2	211502448	211502448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122633.1	+1	reviewed	p.L910M	0.997	297	0%	206	25.7%	3	0%	possibly_damaging(0.863)	tolerated(0.2)	neutral(0.383)	HMMPfam_CPSase_L_D3,superfamily_Carbamoyl phosphate synthetase large subunit connection domain
CPS1	1373	genome.wustl.edu	37	2	211523389	211523389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122633.1	+1	reviewed	p.L1251I	1.000	124	0%	90	22.2%	0	-	possibly_damaging(0.72)	tolerated(1)	neutral(0.261)	superfamily_Glutathione synthetase ATP-binding domain-like
CPS1	1373	genome.wustl.edu	37	2	211539635	211539635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122633.1	+1	reviewed	p.R1377W	1.000	231	0%	167	31.7%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_Methylglyoxal synthase-like
ERBB4	2066	genome.wustl.edu	37	2	212251730	212251730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005235.2	-1	reviewed	p.T1110I	1.000	108	0%	78	33.3%	0	-	possibly_damaging(0.488)	tolerated(0.09)	neutral(0.459)	NULL
ERBB4	2066	genome.wustl.edu	37	2	212285173	212285173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005235.2	-1	reviewed	p.S1043L	1.000	76	0%	59	40.7%	0	-	possibly_damaging(0.72)	deleterious(0.01)	deleterious(0.667)	NULL
ERBB4	2066	genome.wustl.edu	37	2	212537949	212537949	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000260943	-1	known	p.V552A	1.000	142	0%	113	30.1%	0	-	-	-	-	HMMSmart_SM00261,superfamily_Growth factor receptor domain
BARD1	580	genome.wustl.edu	37	2	215646178	215646178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000465.2	-1	reviewed	p.K140N	1.000	217	0%	196	30.6%	1	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215797379	215797379	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.Q2589	1.000	83	0%	71	31%	2	0%	-	-	-	NULL
ABCA12	26154	genome.wustl.edu	37	2	215807684	215807684	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.F2467L	1.000	149	0%	125	38.4%	0	-	probably_damaging(0.993)	tolerated(0.19)	deleterious(0.499)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA12	26154	genome.wustl.edu	37	2	215819952	215819952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.L2123I	1.000	127	0%	77	37.7%	1	0%	probably_damaging(0.999)	tolerated(0.45)	deleterious(0.502)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215833494	215833494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.D1910Y	0.998	342	0%	301	27.2%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215835087	215835087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.R1867I	1.000	136	0%	144	29.2%	0	-	benign(0.188)	tolerated(0.18)	neutral(0.074)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215835114	215835114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.K1858T	0.236	139	0%	129	16.3%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215838750	215838750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.D1829N	0.000	148	0%	121	25.6%	4	0%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215884496	215884496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.E438K	0.051	206	0%	151	35.1%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215928927	215928927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173076.2	-1	reviewed	p.R60Q	1.000	151	0%	157	32.5%	1	100%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
FN1	2335	genome.wustl.edu	37	2	216271189	216271189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_212482.1	-1	reviewed	p.D920Y	1.000	73	0%	55	29.1%	116	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216272025	216272025	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_212482.1	-1	reviewed	p.S846	0.063	280	0%	207	29.5%	85	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MREG	55686	genome.wustl.edu	37	2	216861088	216861088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018000.2	-1	validated	p.D66N	0.994	311	0%	314	33.4%	7	85.7%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
TNS1	7145	genome.wustl.edu	37	2	218747128	218747128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022648.4	-1	reviewed	p.R293Q	1.000	86	0%	63	34.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2_CaLB,HMMPfam_PTEN_C2
GPBAR1	151306	genome.wustl.edu	37	2	219128278	219128278	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077191.1	+1	reviewed	p.P277	0.926	50	0%	47	25.5%	1	0%	-	-	-	superfamily_Family A G protein-coupled receptor-like
VIL1	7429	genome.wustl.edu	37	2	219295706	219295706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000440053	+1	known	p.E403K	0.000	18	0%	22	22.7%	0	-	benign(0.031)	-	-	NULL
USP37	57695	genome.wustl.edu	37	2	219374823	219374823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020935.2	-1	validated	p.L302V	1.000	418	0%	403	20.6%	0	-	possibly_damaging(0.794)	tolerated(0.12)	deleterious(0.558)	NULL
USP37	57695	genome.wustl.edu	37	2	219399404	219399404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020935.2	-1	validated	p.S236P	0.987	229	0%	202	27.7%	1	0%	possibly_damaging(0.508)	tolerated(0.07)	deleterious(0.489)	NULL
PLCD4	84812	genome.wustl.edu	37	2	219480768	219480768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032726.2	+1	provisional	p.G55D	0.356	19	0%	39	38.5%	0	-	benign(0.224)	tolerated(0.49)	neutral(0.033)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PLCD4	84812	genome.wustl.edu	37	2	219487409	219487409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032726.2	+1	provisional	p.E194K	1.000	148	0%	178	27%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand
CYP27A1	1593	genome.wustl.edu	37	2	219677680	219677680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000784.3	+1	reviewed	p.M293R	0.761	82	0%	88	38.6%	14	0%	benign(0.035)	deleterious(0.01)	neutral(0.408)	HMMPfam_p450,superfamily_Cytochrome P450
NHEJ1	79840	genome.wustl.edu	37	2	219942061	219942061	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024782.2	-1	reviewed	p.A244	0.025	128	0%	119	31.1%	9	22.2%	-	-	-	NULL
GLB1L	79411	genome.wustl.edu	37	2	220104360	220104360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024506.3	-1	provisional	p.Q275H	0.893	225	0%	229	34.9%	8	37.5%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
STK16	8576	genome.wustl.edu	37	2	220111441	220111441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008910.2	+1	validated	p.R50Q	1.000	53	0%	43	39.5%	36	41.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Kinase_like,HMMPfam_Pkinase
PTPRN	5798	genome.wustl.edu	37	2	220160950	220160950	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002846.2	-1	reviewed	p.E836*	1.000	346	0%	225	24.9%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
SPEG	10290	genome.wustl.edu	37	2	220332071	220332071	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005876.4	+1	validated	p.F1019	0.998	29	0%	17	41.2%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
GMPPA	29926	genome.wustl.edu	37	2	220366556	220366556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000373924	+1	known	p.S7L	0.368	89	0%	102	38.2%	0	-	unknown(0)	deleterious(0)	-	NULL
ASIC4	55515	genome.wustl.edu	37	2	220396601	220396601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018674.4	+1	reviewed	p.Y362C	1.000	128	0%	122	35.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ASC
EPHA4	2043	genome.wustl.edu	37	2	222301283	222301283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004438.3	-1	reviewed	p.R728C	1.000	210	0%	225	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PAX3	5077	genome.wustl.edu	37	2	223084957	223084957	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181459.2	-1	reviewed	p.T359P	1.000	76	0%	47	36.2%	0	-	benign(0.051)	tolerated(0.2)	neutral(0.052)	NULL
CCDC140	151278	genome.wustl.edu	37	2	223169040	223169040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153038.1	+1	validated	p.A140V	0.000	67	0%	80	28.7%	0	-	unknown(0)	-	-	NULL
FARSB	10056	genome.wustl.edu	37	2	223513509	223513509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005687.3	-1	reviewed	p.E22K	1.000	179	0%	151	24.5%	22	22.7%	benign(0.03)	tolerated(0.16)	neutral(0.061)	superfamily_Putative DNA-binding domain
DOCK10	55619	genome.wustl.edu	37	2	225651759	225651759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014689.2	-1	validated	p.R1879C	1.000	266	0%	244	27%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOCK10	55619	genome.wustl.edu	37	2	225710341	225710341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014689.2	-1	validated	p.T752A	1.000	340	0%	225	25.8%	1	0%	benign(0.395)	tolerated(0.45)	neutral(0.139)	NULL
NYAP2	57624	genome.wustl.edu	37	2	226447149	226447149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020864.1	+1	validated	p.F339C	1.000	46	0%	43	30.2%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
NYAP2	57624	genome.wustl.edu	37	2	226447216	226447216	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020864.1	+1	validated	p.T361	0.012	27	0%	25	24%	0	-	-	-	-	NULL
COL4A4	1286	genome.wustl.edu	37	2	227872864	227872864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000092.4	-1	reviewed	p.R1560H	0.096	22	0%	25	28%	0	-	unknown(0)	tolerated(0.1)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
WDR69	164781	genome.wustl.edu	37	2	228754597	228754597	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178821.1	+1	provisional	p.E47*	1.000	101	0%	76	22.4%	0	-	-	-	-	superfamily_WD40 repeat-like
SPHKAP	80309	genome.wustl.edu	37	2	228881353	228881353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142644.1	-1	validated	p.S1406F	0.001	140	0%	117	25.6%	0	-	possibly_damaging(0.887)	tolerated(0.2)	neutral(0.396)	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228884290	228884290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142644.1	-1	validated	p.S427Y	0.000	113	0%	69	21.7%	0	-	benign(0.139)	deleterious(0)	neutral(0.457)	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228973649	228973649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142644.1	-1	validated	p.R49C	0.987	178	0%	106	29.2%	0	-	benign(0.078)	tolerated(0.22)	neutral(0.048)	NULL
PID1	55022	genome.wustl.edu	37	2	229890494	229890494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017933.4	-1	validated	p.E201K	1.000	144	0%	141	29.8%	0	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	superfamily_SSF50729
DNER	92737	genome.wustl.edu	37	2	230282898	230282898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139072.3	-1	validated	p.A512V	0.038	89	0%	71	32.4%	5	60%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
DNER	92737	genome.wustl.edu	37	2	230456319	230456319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139072.3	-1	validated	p.E188*	0.945	71	0%	82	31.7%	4	0%	-	-	-	NULL
TRIP12	9320	genome.wustl.edu	37	2	230664097	230664097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004238.1	-1	provisional	p.R995Q	1.000	86	0%	61	24.6%	21	47.6%	possibly_damaging(0.936)	tolerated(0.15)	deleterious(0.623)	NULL
TRIP12	9320	genome.wustl.edu	37	2	230724169	230724169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004238.1	-1	provisional	p.R74C	1.000	289	0%	291	29.6%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC16A14	151473	genome.wustl.edu	37	2	230902145	230902145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152527.4	-1	validated	p.R495Q	0.251	94	0%	71	32.4%	1	0%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
SP100	6672	genome.wustl.edu	37	2	231307662	231307662	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080391.1	+1	validated	p.E40*	0.012	210	0%	193	17.1%	8	37.5%	-	-	-	NULL
SP100	6672	genome.wustl.edu	37	2	231309042	231309042	+	Silent	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080391.1	+1	validated	p.I140	0.000	290	0%	279	31.2%	19	10.5%	-	-	-	HMMPfam_Sp100
SP100	6672	genome.wustl.edu	37	2	231314372	231314372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080391.1	+1	validated	p.S228L	0.001	181	0%	192	34.4%	15	26.6%	benign(0.023)	tolerated(0.17)	neutral(0.060)	NULL
SNORD82	25826	genome.wustl.edu	37	2	232325122	232325122	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_004398.1	-1	provisional	NULL	1.000	379	0%	467	32.5%	0	-	-	-	-	-
NMUR1	10316	genome.wustl.edu	37	2	232392963	232392963	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006056.4	-1	validated	p.R257*	1.000	50	0%	48	37.5%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ALPPL2	251	genome.wustl.edu	37	2	233271828	233271828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031313.2	+1	reviewed	p.K43N	0.992	52	0%	45	24.4%	5	20%	benign(0.332)	deleterious(0.01)	deleterious(0.510)	superfamily_Alkaline_phosphatase_core
EFHD1	80303	genome.wustl.edu	37	2	233546356	233546356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025202.3	+1	validated	p.R216Q	0.997	310	0%	393	29%	3	66.6%	possibly_damaging(0.884)	deleterious(0.02)	deleterious(0.728)	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233651952	233651952	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001103147.1	+1	reviewed	p.E231*	1.000	116	0%	91	26.4%	5	0%	-	-	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233655832	233655832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001103147.1	+1	reviewed	p.D371N	0.998	282	0%	283	30%	3	0%	possibly_damaging(0.895)	tolerated(0.3)	neutral(0.382)	NULL
INPP5D	3635	genome.wustl.edu	37	2	233925237	233925237	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000359570	+1	known	p.E17*	1.000	40	0%	40	35%	1	0%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
DGKD	8527	genome.wustl.edu	37	2	234346115	234346115	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152879.2	+1	reviewed	p.I304	0.987	57	0%	51	39.2%	1	0%	-	-	-	NULL
DGKD	8527	genome.wustl.edu	37	2	234350612	234350612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152879.2	+1	reviewed	p.E389K	1.000	132	0%	115	27.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DAGK_cat,HMMSmart_SM00046
DGKD	8527	genome.wustl.edu	37	2	234365629	234365629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152879.2	+1	reviewed	p.K820N	1.000	128	0%	122	14.8%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_DAGK_acc,HMMSmart_SM00045
USP40	55230	genome.wustl.edu	37	2	234399886	234399886	+	Missense_Mutation	SNP	G	G	A	rs188487360	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018218.2	-1	validated	p.A991V	0.000	33	0%	24	37.5%	14	14.2%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
UGT1A10	54575	genome.wustl.edu	37	2	234545486	234545486	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019075.2	+1	reviewed	p.F106	0.000	430	0%	348	26.1%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A9	54600	genome.wustl.edu	37	2	234581002	234581002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021027.2	+1	reviewed	p.S141Y	0.011	403	0%	497	34.8%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A6	54578	genome.wustl.edu	37	2	234602187	234602187	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001072.3	+1	reviewed	p.E179	0.040	347	0%	388	29.9%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A4	54657	genome.wustl.edu	37	2	234627598	234627598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007120.2	+1	reviewed	p.M44I	1.000	85	0%	82	31.7%	0	-	benign(0.048)	tolerated(0.33)	neutral(0.027)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A1	54658	genome.wustl.edu	37	2	234669542	234669542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000463.2	+1	reviewed	p.H203Q	0.946	289	0%	234	32.5%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
TRPM8	79054	genome.wustl.edu	37	2	234839348	234839348	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024080.4	+1	validated	p.K51	1.000	226	0%	204	33.3%	0	-	-	-	-	NULL
TRPM8	79054	genome.wustl.edu	37	2	234891812	234891812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024080.4	+1	validated	p.S902L	0.996	213	0%	210	35.2%	1	0%	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	HMMPfam_Ion_trans
AGAP1	116987	genome.wustl.edu	37	2	236653450	236653450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037131.1	+1	validated	p.S169G	0.032	87	0%	78	34.6%	6	66.6%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
IQCA1	79781	genome.wustl.edu	37	2	237240133	237240133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024726.3	-1	provisional	p.E748K	0.208	146	0.7%	141	29.8%	0	-	benign(0.03)	tolerated(0.59)	neutral(0.006)	superfamily_P-loop containing nucleoside triphosphate hydrolases
COL6A3	1293	genome.wustl.edu	37	2	238253394	238253394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004369.3	-1	reviewed	p.D2423Y	0.703	190	0%	154	31.8%	158	0.6%	probably_damaging(0.999)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238275575	238275575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004369.3	-1	reviewed	p.G1752E	0.999	108	0%	145	31.7%	67	0%	unknown(0)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238277647	238277647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004369.3	-1	reviewed	p.E1487K	0.974	121	0%	139	15.1%	43	0%	unknown(0)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238303380	238303380	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004369.3	-1	reviewed	p.E187*	0.996	103	0%	97	20.6%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
RAB17	64284	genome.wustl.edu	37	2	238494686	238494686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022449.3	-1	validated	p.R38W	1.000	74	0%	53	35.8%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
RBM44	375316	genome.wustl.edu	37	2	238726387	238726387	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080504.2	+1	validated	p.D276	0.000	80	0%	102	33.3%	0	-	-	-	-	NULL
RBM44	375316	genome.wustl.edu	37	2	238726664	238726664	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080504.2	+1	validated	p.E369*	0.019	203	0%	193	31.1%	0	-	-	-	-	NULL
RBM44	375316	genome.wustl.edu	37	2	238729815	238729815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080504.2	+1	validated	p.H673R	0.000	89	0%	80	27.5%	0	-	benign(0.178)	tolerated(0.43)	neutral(0.030)	NULL
ILKAP	80895	genome.wustl.edu	37	2	239092296	239092296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030768.2	-1	reviewed	p.R238W	1.000	62	0%	90	11.1%	54	18.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
TRAF3IP1	26146	genome.wustl.edu	37	2	239237613	239237613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015650.3	+1	validated	p.R182Q	0.000	23	0%	25	32%	6	66.6%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_MIP-T3
TRAF3IP1	26146	genome.wustl.edu	37	2	239261552	239261552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015650.3	+1	validated	p.E512D	0.750	443	0%	353	27.2%	15	40%	possibly_damaging(0.942)	tolerated(0.34)	neutral(0.410)	HMMPfam_MIP-T3
HDAC4	9759	genome.wustl.edu	37	2	240085556	240085556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006037.3	-1	reviewed	p.A185V	0.999	37	0%	34	44.1%	0	-	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	NULL
OR6B2	389090	genome.wustl.edu	37	2	240969277	240969277	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005853.1	-1	provisional	p.T190	0.002	77	0%	77	32.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYEOV2	150678	genome.wustl.edu	37	2	241066189	241066189	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138336.1	-1	validated	p.N184H	0.000	219	0%	203	31%	0	-	unknown(0)	-	-	NULL
ANKMY1	51281	genome.wustl.edu	37	2	241452248	241452248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016552.2	-1	validated	p.D617N	0.961	16	0%	20	35%	2	100%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_Ankyrin repeat
CAPN10	11132	genome.wustl.edu	37	2	241534461	241534461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023083.2	+1	reviewed	p.R340W	0.490	43	0%	23	21.7%	4	25%	probably_damaging(0.965)	tolerated(0.06)	deleterious(0.730)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)
AQP12A	375318	genome.wustl.edu	37	2	241631644	241631644	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198998.1	+1	provisional	p.E93*	0.465	37	0%	24	33.3%	1	0%	-	-	-	superfamily_MIP
AGXT	189	genome.wustl.edu	37	2	241808766	241808766	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000030.2	+1	reviewed	p.I115	0.923	16	0%	11	45.5%	0	-	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
AGXT	189	genome.wustl.edu	37	2	241813437	241813437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000030.2	+1	reviewed	p.A213V	0.030	68	0%	56	39.3%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases,PatternScan_AA_TRANSFER_CLASS_5
SNED1	25992	genome.wustl.edu	37	2	241992584	241992584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080437.1	+1	provisional	p.P700T	0.029	22	0%	19	31.6%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ANO7	50636	genome.wustl.edu	37	2	242147019	242147019	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001891.3	+1	validated	p.F391	0.000	110	0%	104	27.9%	0	-	-	-	-	NULL
HDLBP	3069	genome.wustl.edu	37	2	242196123	242196123	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005336.3	-1	validated	p.K183N	0.909	117	0%	134	33.6%	115	40.8%	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
CXXC11	285093	genome.wustl.edu	37	2	242815140	242815140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173821.2	+1	validated	p.V478A	0.011	17	0%	19	21.1%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
LOC728323	728323	genome.wustl.edu	37	2	243064522	243064522	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_024437.1	+1	validated	NULL	0.991	68	0%	49	24.5%	2	0%	-	-	-	-
CHL1	10752	genome.wustl.edu	37	3	361529	361529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006614.2	+1	reviewed	p.A24T	0.730	48	0%	26	26.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CHL1	10752	genome.wustl.edu	37	3	403417	403417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006614.2	+1	reviewed	p.N448H	0.001	202	0%	163	23.3%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00409,superfamily_Immunoglobulin
CNTN6	27255	genome.wustl.edu	37	3	1269521	1269521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014461.2	+1	reviewed	p.D68Y	0.980	289	0%	198	27.3%	0	-	possibly_damaging(0.679)	deleterious(0.03)	deleterious(0.607)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1414032	1414032	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014461.2	+1	reviewed	p.G514	0.001	143	0%	134	32.8%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1415682	1415682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014461.2	+1	reviewed	p.R674C	1.000	123	0%	136	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN4	152330	genome.wustl.edu	37	3	3084756	3084756	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175607.1	+1	reviewed	p.G869	1.000	110	0%	103	32%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
IL5RA	3568	genome.wustl.edu	37	3	3116538	3116538	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000564.3	-1	reviewed	p.W368*	1.000	70	0%	66	24.2%	0	-	-	-	-	NULL
IL5RA	3568	genome.wustl.edu	37	3	3139858	3139858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000564.3	-1	reviewed	p.D162Y	0.006	110	0%	123	32.5%	0	-	probably_damaging(0.97)	deleterious(0.04)	deleterious(0.761)	HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_Fibronectin type III
TRNT1	51095	genome.wustl.edu	37	3	3189241	3189241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182916.2	+1	validated	p.D304N	1.000	253	0%	163	30.7%	7	14.2%	benign(0.002)	tolerated(0.25)	neutral(0.037)	superfamily_Poly A polymerase C-terminal region-like
LRRN1	57633	genome.wustl.edu	37	3	3888421	3888421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020873.5	+1	validated	p.S699Y	0.327	106	0%	112	30.4%	0	-	possibly_damaging(0.437)	deleterious(0.01)	deleterious(0.548)	NULL
SUMF1	285362	genome.wustl.edu	37	3	4403847	4403847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182760.3	-1	reviewed	p.R369H	0.718	90	0%	104	27.9%	16	25%	benign(0.008)	tolerated(0.19)	neutral(0.050)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4687308	4687308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099952.2	+1	reviewed	p.L251I	1.000	80	0%	69	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
ITPR1	3708	genome.wustl.edu	37	3	4706873	4706873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099952.2	+1	reviewed	p.L536F	1.000	141	0%	163	34.4%	0	-	benign(0.115)	tolerated(0.05)	neutral(0.354)	HMMPfam_RYDR_ITPR,superfamily_IP3 receptor type 1 binding core domain 2
ITPR1	3708	genome.wustl.edu	37	3	4716885	4716885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099952.2	+1	reviewed	p.A911V	0.934	136	0%	152	27%	0	-	benign(0.004)	tolerated(0.28)	neutral(0.032)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4730241	4730241	+	Silent	SNP	C	C	T	rs140402012	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099952.2	+1	reviewed	p.C1246	0.476	379	0%	314	30.3%	0	-	-	-	-	HMMPfam_RYDR_ITPR
ITPR1	3708	genome.wustl.edu	37	3	4738854	4738854	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099952.2	+1	reviewed	p.F1426	1.000	34	0%	36	27.8%	1	0%	-	-	-	NULL
GRM7	2917	genome.wustl.edu	37	3	7494303	7494303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181874.2	+1	reviewed	p.R395I	1.000	157	0%	166	27.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_ANF_receptor,superfamily_SSF53822
SETD5	55209	genome.wustl.edu	37	3	9477583	9477583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080517.1	+1	provisional	p.K187R	1.000	47	0%	53	32.1%	4	75%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SETD5	55209	genome.wustl.edu	37	3	9495424	9495424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080517.1	+1	provisional	p.R783H	1.000	177	0%	123	30.9%	15	20%	possibly_damaging(0.542)	deleterious(0)	deleterious(0.628)	NULL
RPUSD3	285367	genome.wustl.edu	37	3	9883636	9883636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000433555	-1	known	p.S88I	0.000	228	0%	213	28.6%	8	25%	possibly_damaging(0.574)	-	-	NULL
IL17RC	84818	genome.wustl.edu	37	3	9960203	9960203	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153461.2	+1	reviewed	p.V196	0.861	80	0%	60	26.7%	16	12.5%	-	-	-	NULL
CRELD1	78987	genome.wustl.edu	37	3	9985694	9985694	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031717.3	+1	reviewed	p.A386G	0.000	216	0%	138	29%	0	-	benign(0.041)	tolerated(0.25)	neutral(0.040)	NULL
FANCD2	2177	genome.wustl.edu	37	3	10123089	10123089	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000421731	+1	known	p.T555I	0.773	399	0%	437	34.1%	16	68.7%	-	-	-	NULL
IRAK2	3656	genome.wustl.edu	37	3	10283857	10283857	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001570.3	+1	reviewed	p.N608T	0.932	117	0%	112	25%	0	-	benign(0.099)	deleterious(0.02)	neutral(0.391)	NULL
TATDN2	9797	genome.wustl.edu	37	3	10312598	10312598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014760.3	+1	validated	p.N578H	0.997	221	0%	221	30.8%	26	34.6%	benign(0.007)	tolerated(0.13)	neutral(0.253)	HMMPfam_TatD_DNase,superfamily_SSF51556
GHRLOS2	84657	genome.wustl.edu	37	3	10327344	10327344	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_026829.1	+1	validated	NULL	0.016	26	0%	29	27.6%	0	-	-	-	-	-
SLC6A11	6538	genome.wustl.edu	37	3	10885930	10885930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014229.1	+1	provisional	p.E219K	1.000	41	0%	38	23.7%	0	-	benign(0.054)	deleterious(0.03)	neutral(0.368)	HMMPfam_SNF
SLC6A11	6538	genome.wustl.edu	37	3	10960060	10960060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014229.1	+1	provisional	p.A348S	1.000	103	0%	114	34.2%	0	-	possibly_damaging(0.575)	tolerated(0.18)	neutral(0.253)	HMMPfam_SNF
SLC6A11	6538	genome.wustl.edu	37	3	10974903	10974903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014229.1	+1	provisional	p.A480T	1.000	160	0%	143	30.1%	0	-	probably_damaging(0.988)	tolerated(0.1)	deleterious(0.724)	HMMPfam_SNF
ATG7	10533	genome.wustl.edu	37	3	11374534	11374534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006395.2	+1	validated	p.E286K	1.000	86	0%	93	22.6%	14	28.5%	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
SYN2	6854	genome.wustl.edu	37	3	12224815	12224815	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000341648	+1	known	p.G369fs	0.998	-	-	-	-	-	-	-	-	-	NULL
TSEN2	80746	genome.wustl.edu	37	3	12560645	12560645	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145392.1	+1	reviewed	p.R350*	1.000	235	0%	208	28.8%	6	0%	-	-	-	HMMPfam_tRNA_int_endo,superfamily_tRNA-intron endonuclease catalytic domain-like
TMEM40	55287	genome.wustl.edu	37	3	12778262	12778262	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018306.2	-1	provisional	e8+1	1.000	204	0%	198	33.3%	0	-	-	-	-	-
IQSEC1	9922	genome.wustl.edu	37	3	12966083	12966083	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000450726	-1	known	p.R591*	0.767	25	0%	22	45.5%	3	66.6%	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
NUP210	23225	genome.wustl.edu	37	3	13364836	13364836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024923.2	-1	reviewed	p.V1581M	0.008	220	0%	222	25.7%	18	27.7%	possibly_damaging(0.644)	tolerated(0.09)	deleterious(0.522)	NULL
NUP210	23225	genome.wustl.edu	37	3	13429929	13429929	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024923.2	-1	reviewed	p.T186	0.002	51	0%	47	23.4%	4	50%	-	-	-	NULL
FGD5	152273	genome.wustl.edu	37	3	14862049	14862049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152536.3	+1	validated	p.G491S	0.998	44	0%	53	34%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGD5	152273	genome.wustl.edu	37	3	14862525	14862525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152536.3	+1	validated	p.K649N	1.000	146	0%	170	31.2%	3	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
NR2C2	7182	genome.wustl.edu	37	3	15065707	15065707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003298.3	+1	validated	p.D283N	1.000	199	0%	165	24.8%	3	0%	probably_damaging(0.99)	tolerated(0.29)	deleterious(0.471)	superfamily_Nuclear receptor ligand-binding domain
ZFYVE20	64145	genome.wustl.edu	37	3	15137504	15137504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022340.2	-1	validated	p.R42C	0.999	134	0%	118	33.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SH3BP5	9467	genome.wustl.edu	37	3	15300449	15300449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004844.3	-1	validated	p.R260W	1.000	79	0%	58	31%	17	17.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3BP5
COLQ	8292	genome.wustl.edu	37	3	15563081	15563081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005677.3	-1	reviewed	p.L18I	0.998	139	0%	123	22.8%	0	-	unknown(0)	-	-	NULL
ANKRD28	23243	genome.wustl.edu	37	3	15720871	15720871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015199.2	-1	provisional	p.A803V	1.000	424	0.2%	295	33.9%	11	0%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD28	23243	genome.wustl.edu	37	3	15836768	15836768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015199.2	-1	provisional	p.R25*	1.000	199	0%	147	54.4%	3	100%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GALNTL2	117248	genome.wustl.edu	37	3	16252734	16252734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_054110.4	+1	validated	p.E395K	1.000	75	0%	64	25%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53448
RFTN1	23180	genome.wustl.edu	37	3	16358557	16358557	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015150.1	-1	validated	p.S505	0.000	123	0%	116	30.2%	17	0%	-	-	-	NULL
PLCL2	23228	genome.wustl.edu	37	3	17052089	17052089	+	Silent	SNP	C	C	T	rs184972109	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000419842	+1	known	p.S35L	1.000	218	0%	185	32.4%	2	0%	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
PLCL2	23228	genome.wustl.edu	37	3	17052328	17052328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015184.5	+1	validated	p.R371H	1.000	137	0%	101	34.7%	1	0%	benign(0.182)	tolerated(0.11)	neutral(0.288)	HMMPfam_PI-PLC-X,HMMSmart_PLCXc,superfamily_PLC-like_Pdiesterase_TIM-brl
PLCL2	23228	genome.wustl.edu	37	3	17052335	17052335	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000419842	+1	known	p.S117*	1.000	139	0%	104	28.8%	1	0%	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
PLCL2	23228	genome.wustl.edu	37	3	17131230	17131230	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015184.5	+1	validated	p.Q944H	0.999	298	0%	243	30.9%	1	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
TBC1D5	9779	genome.wustl.edu	37	3	17226618	17226618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134381.1	-1	validated	p.V634A	1.000	138	0%	135	25.2%	7	71.4%	benign(0.023)	tolerated(0.2)	neutral(0.050)	NULL
SATB1	6304	genome.wustl.edu	37	3	18390688	18390688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001131010.1	-1	validated	p.D756Y	1.000	206	0%	169	30.8%	3	0%	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
SATB1	6304	genome.wustl.edu	37	3	18391112	18391112	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001131010.1	-1	validated	p.P614	0.085	44	0%	39	33.3%	5	0%	-	-	-	NULL
SATB1	6304	genome.wustl.edu	37	3	18436040	18436040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001131010.1	-1	validated	p.E374K	1.000	256	0%	238	39.5%	5	0%	benign(0.141)	deleterious(0.01)	neutral(0.418)	HMMPfam_CUT
KCNH8	131096	genome.wustl.edu	37	3	19498286	19498286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144633.2	+1	reviewed	p.L618I	1.000	271	0%	158	32.9%	0	-	benign(0.076)	tolerated(0.84)	neutral(0.006)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
KCNH8	131096	genome.wustl.edu	37	3	19574993	19574993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144633.2	+1	reviewed	p.S909Y	0.994	261	0%	183	27.9%	0	-	benign(0.355)	tolerated(0.05)	neutral(0.458)	NULL
EFHB	151651	genome.wustl.edu	37	3	19938247	19938247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144715.3	-1	validated	p.H553Y	0.930	127	0%	127	28.3%	0	-	benign(0.02)	deleterious(0.04)	neutral(0.350)	NULL
EFHB	151651	genome.wustl.edu	37	3	19975280	19975280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144715.3	-1	validated	p.Q77H	0.007	283	0.4%	263	10.6%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
KAT2B	8850	genome.wustl.edu	37	3	20187848	20187848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003884.4	+1	reviewed	p.R682Q	1.000	552	0%	543	30.9%	8	62.5%	benign(0.114)	tolerated(0.94)	neutral(0.009)	NULL
UBE2E2	7325	genome.wustl.edu	37	3	23258752	23258752	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152653.3	+1	validated	e2-1	1.000	166	1.2%	127	22%	0	-	-	-	-	-
THRB	7068	genome.wustl.edu	37	3	24185133	24185133	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000461.4	-1	reviewed	p.R199	0.933	160	0%	145	38.6%	0	-	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
THRB	7068	genome.wustl.edu	37	3	24231725	24231725	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000461.4	-1	reviewed	p.S41	0.998	148	0%	115	28.7%	0	-	-	-	-	NULL
NGLY1	55768	genome.wustl.edu	37	3	25781264	25781264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018297.3	-1	reviewed	p.L229I	1.000	231	0%	220	27.3%	7	42.8%	possibly_damaging(0.946)	tolerated(0.23)	neutral(0.431)	NULL
NGLY1	55768	genome.wustl.edu	37	3	25805679	25805679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018297.3	-1	reviewed	p.S124P	0.100	252	0.4%	225	32.4%	15	33.3%	possibly_damaging(0.684)	tolerated(0.19)	neutral(0.293)	NULL
LRRC3B	116135	genome.wustl.edu	37	3	26751412	26751412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052953.2	+1	provisional	p.I83M	1.000	195	0%	204	34.3%	0	-	possibly_damaging(0.56)	deleterious(0.02)	deleterious(0.574)	HMMPfam_LRR_1,superfamily_SSF52058
LRRC3B	116135	genome.wustl.edu	37	3	26751473	26751473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052953.2	+1	provisional	p.D104N	0.999	184	0%	189	36.5%	0	-	possibly_damaging(0.741)	tolerated(0.1)	deleterious(0.558)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
NEK10	152110	genome.wustl.edu	37	3	27216204	27216204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000396636	-1	known	p.E876K	0.993	176	0%	152	15.1%	0	-	possibly_damaging(0.601)	tolerated(0.12)	deleterious(0.469)	NULL
SLC4A7	9497	genome.wustl.edu	37	3	27442293	27442293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003615.3	-1	validated	p.T788A	0.092	244	0%	187	41.7%	0	-	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_HCO3_cotransp
ZCWPW2	152098	genome.wustl.edu	37	3	28476733	28476733	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000419130	+1	known	p.R7C	0.509	124	0%	111	34.2%	0	-	-	-	-	NULL
GADL1	339896	genome.wustl.edu	37	3	30842521	30842521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207359.2	-1	validated	p.F370L	1.000	146	0%	130	33.1%	0	-	possibly_damaging(0.68)	tolerated(0.69)	neutral(0.244)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
OSBPL10	114884	genome.wustl.edu	37	3	31921248	31921248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017784.4	-1	reviewed	p.R119Q	0.996	226	0%	218	28.9%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
CNOT10	25904	genome.wustl.edu	37	3	32778971	32778971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015442.1	+1	provisional	p.L528F	1.000	74	0%	78	33.3%	29	58.6%	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
TRIM71	131405	genome.wustl.edu	37	3	32915329	32915329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039111.1	+1	provisional	p.D291G	1.000	401	0.2%	407	28.3%	0	-	possibly_damaging(0.623)	tolerated(0.09)	deleterious(0.513)	HMMPfam_zf-B_box,HMMSmart_BBOX
TRIM71	131405	genome.wustl.edu	37	3	32932414	32932414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039111.1	+1	provisional	p.N573S	1.000	31	0%	38	26.3%	0	-	benign(0.019)	tolerated(0.14)	neutral(0.251)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
CCR4	1233	genome.wustl.edu	37	3	32995445	32995445	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005508.4	+1	reviewed	p.T177	0.002	100	0%	117	37.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GLB1	2720	genome.wustl.edu	37	3	33055619	33055619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000404.2	-1	reviewed	p.N555D	0.983	77	0%	81	29.6%	110	42.7%	possibly_damaging(0.553)	tolerated(0.23)	neutral(0.230)	NULL
SUSD5	26032	genome.wustl.edu	37	3	33255583	33255583	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015551.1	-1	validated	p.L43	0.942	52	0%	72	36.1%	0	-	-	-	-	HMMPfam_Xlink,HMMSmart_LINK,superfamily_C-type_lectin_fold
FBXL2	25827	genome.wustl.edu	37	3	33339438	33339438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000451636	+1	known	p.D48G	1.000	17	0%	14	35.7%	0	-	unknown(0)	-	-	NULL
UBP1	7342	genome.wustl.edu	37	3	33438562	33438562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128161.1	-1	validated	p.R416W	1.000	101	0%	115	30.4%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SAM/Pointed domain
TRANK1	9881	genome.wustl.edu	37	3	36874624	36874624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014831.2	-1	provisional	p.E1556D	1.000	130	0%	76	26.3%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36898642	36898642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014831.2	-1	provisional	p.K263N	0.999	335	0%	307	33.6%	0	-	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
LRRFIP2	9209	genome.wustl.edu	37	3	37125157	37125157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006309.2	-1	validated	p.E416D	1.000	291	0%	208	29.3%	20	40%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_DUF2051
LRRFIP2	9209	genome.wustl.edu	37	3	37138119	37138119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006309.2	-1	validated	p.E302D	1.000	65	0%	82	31.7%	23	56.5%	benign(0.01)	tolerated(0.39)	neutral(0.017)	HMMPfam_DUF2051
GOLGA4	2803	genome.wustl.edu	37	3	37363264	37363264	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002078.4	+1	reviewed	p.E530*	1.000	204	0%	192	37%	0	-	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37365198	37365198	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002078.4	+1	reviewed	p.V607	0.984	158	0%	157	31.2%	8	12.5%	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37365969	37365969	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002078.4	+1	reviewed	p.Q864	0.040	282	0%	221	30.8%	4	100%	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37366090	37366090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002078.4	+1	reviewed	p.I905L	0.000	199	0%	212	34%	1	0%	benign(0)	tolerated(0.93)	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37367855	37367855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002078.4	+1	reviewed	p.K1493T	0.000	302	0%	297	32%	5	20%	possibly_damaging(0.882)	tolerated(0.18)	neutral(0.400)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37368996	37368996	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002078.4	+1	reviewed	p.E1873D	0.015	371	0%	390	33.3%	10	0%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
VILL	50853	genome.wustl.edu	37	3	38048170	38048170	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015873.3	+1	reviewed	p.G812	0.908	102	0%	90	36.7%	1	100%	-	-	-	superfamily_VHP Villin headpiece domain
DLEC1	9940	genome.wustl.edu	37	3	38104098	38104098	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007337.2	+1	reviewed	p.N300	0.000	109	0%	162	17.3%	0	-	-	-	-	NULL
DLEC1	9940	genome.wustl.edu	37	3	38104255	38104255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007337.2	+1	reviewed	p.P353S	0.000	131	0%	151	23.8%	0	-	benign(0.002)	tolerated(0.51)	neutral(0.009)	NULL
XYLB	9942	genome.wustl.edu	37	3	38437043	38437043	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005108.3	+1	reviewed	p.E447*	1.000	93	0%	78	32.1%	3	0%	-	-	-	HMMPfam_FGGY_C,superfamily_SSF53067
ACVR2B	93	genome.wustl.edu	37	3	38519422	38519422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001106.3	+1	reviewed	p.E111K	1.000	228	0%	164	30.5%	0	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	HMMPfam_Activin_recp,superfamily_Snake toxin-like
SCN5A	6331	genome.wustl.edu	37	3	38592490	38592490	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099404.1	-1	reviewed	p.F1791	0.984	229	0%	162	28.4%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
SCN5A	6331	genome.wustl.edu	37	3	38595795	38595795	+	Silent	SNP	G	G	A	rs141789366	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099404.1	-1	reviewed	p.F1596	0.997	161	0%	111	27%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN5A	6331	genome.wustl.edu	37	3	38601752	38601752	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099404.1	-1	reviewed	p.I1377	0.381	127	0%	83	19.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN5A	6331	genome.wustl.edu	37	3	38627422	38627422	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099404.1	-1	reviewed	p.I849	1.000	322	0%	268	31.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN5A	6331	genome.wustl.edu	37	3	38649700	38649700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099404.1	-1	reviewed	p.Y314H	0.999	127	0%	77	28.6%	0	-	benign(0.066)	tolerated(0.26)	neutral(0.038)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN10A	6336	genome.wustl.edu	37	3	38739975	38739975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006514.2	-1	validated	p.R1579Q	0.983	203	0%	250	33.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38797357	38797357	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006514.2	-1	validated	p.R461	0.003	204	0%	225	31.1%	0	-	-	-	-	NULL
SCN11A	11280	genome.wustl.edu	37	3	38904693	38904693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014139.2	-1	validated	p.R1350Q	1.000	184	0%	172	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
SCN11A	11280	genome.wustl.edu	37	3	38927686	38927686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014139.2	-1	validated	p.R960I	0.014	163	0%	146	28.8%	0	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMPfam_Na_trans_assoc
SCN11A	11280	genome.wustl.edu	37	3	38936386	38936386	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014139.2	-1	validated	p.G825*	0.921	233	0%	161	27.3%	0	-	-	-	-	HMMPfam_Na_trans_assoc
GORASP1	64689	genome.wustl.edu	37	3	39140258	39140258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031899.2	-1	reviewed	p.S348Y	0.995	128	0%	86	27.9%	22	40.9%	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_GRASP55_65
XIRP1	165904	genome.wustl.edu	37	3	39227032	39227032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194293.2	-1	provisional	p.R1302I	0.001	75	0%	54	16.7%	0	-	possibly_damaging(0.801)	deleterious(0.01)	deleterious(0.707)	NULL
CCR8	1237	genome.wustl.edu	37	3	39374678	39374678	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005201.3	+1	reviewed	p.E286*	0.030	136	0%	132	33.3%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYRIP	25924	genome.wustl.edu	37	3	40211447	40211447	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015460.2	+1	validated	p.R246*	0.996	105	0%	113	29.2%	0	-	-	-	-	NULL
ZNF620	253639	genome.wustl.edu	37	3	40557900	40557900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175888.2	+1	validated	p.R272I	1.000	193	0%	232	31.9%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF621	285268	genome.wustl.edu	37	3	40573884	40573884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098414.1	+1	validated	p.E208A	0.009	184	0%	209	36.8%	1	100%	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CTNNB1	1499	genome.wustl.edu	37	3	41277291	41277291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098209.1	+1	reviewed	p.R587Q	1.000	312	0%	286	28.7%	366	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
CTNNB1	1499	genome.wustl.edu	37	3	41279564	41279564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098209.1	+1	reviewed	p.D712N	1.000	285	0%	264	27.7%	375	30.9%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
ULK4	54986	genome.wustl.edu	37	3	41996207	41996207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017886.2	-1	validated	p.K15N	1.000	212	0%	183	27.9%	1	0%	benign(0.007)	tolerated(0.36)	neutral(0.020)	superfamily_Kinase_like,HMMPfam_Pkinase
SEC22C	9117	genome.wustl.edu	37	3	42602660	42602660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032970.2	-1	reviewed	p.D159Y	0.876	245	0%	238	25.6%	38	36.8%	possibly_damaging(0.918)	deleterious(0.04)	deleterious(0.718)	NULL
NKTR	4820	genome.wustl.edu	37	3	42681013	42681013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005385.3	+1	reviewed	p.R1273W	0.996	200	0%	202	33.2%	3	66.6%	unknown(0)	deleterious(0)	-	NULL
ZBTB47	92999	genome.wustl.edu	37	3	42703063	42703063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145166.3	+1	validated	p.F144L	1.000	91	0%	68	30.9%	10	10%	possibly_damaging(0.574)	deleterious(0)	deleterious(0.641)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZBTB47	92999	genome.wustl.edu	37	3	42703109	42703109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145166.3	+1	validated	p.R160C	1.000	68	0%	57	31.6%	8	12.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZBTB47	92999	genome.wustl.edu	37	3	42704541	42704541	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145166.3	+1	validated	p.C177	0.792	144	0%	106	24.5%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CCDC13	152206	genome.wustl.edu	37	3	42771960	42771960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144719.3	-1	validated	p.R573W	1.000	54	0%	40	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF662	389114	genome.wustl.edu	37	3	42955845	42955845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134656.1	+1	validated	p.D120Y	0.634	99	0%	74	29.7%	0	-	possibly_damaging(0.861)	deleterious(0.03)	deleterious(0.698)	NULL
ZNF662	389114	genome.wustl.edu	37	3	42956809	42956809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134656.1	+1	validated	p.P441H	0.764	142	0%	121	13.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
C3orf39	84892	genome.wustl.edu	37	3	43121725	43121725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032806.4	-1	provisional	p.N400S	1.000	41	0%	37	24.3%	32	62.5%	probably_damaging(0.97)	deleterious(0.04)	deleterious(0.761)	NULL
C3orf23	285343	genome.wustl.edu	37	3	44441952	44441952	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173826.3	+1	validated	p.E331*	0.995	174	0%	158	27.2%	6	0%	-	-	-	NULL
ZNF445	353274	genome.wustl.edu	37	3	44491085	44491085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181489.5	-1	validated	p.S284F	1.000	83	0%	76	18.4%	0	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF167	55888	genome.wustl.edu	37	3	44612398	44612398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018651.2	+1	validated	p.R599Q	0.937	188	0%	231	29.4%	2	100%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF660	285349	genome.wustl.edu	37	3	44636314	44636314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173658.1	+1	provisional	p.R210I	1.000	175	0%	227	31.7%	1	0%	possibly_damaging(0.891)	tolerated(0.06)	deleterious(0.673)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF197	10168	genome.wustl.edu	37	3	44684193	44684193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006991.3	+1	reviewed	p.S524N	0.993	172	0%	177	29.4%	0	-	probably_damaging(0.992)	tolerated(0.74)	neutral(0.449)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF197	10168	genome.wustl.edu	37	3	44684395	44684395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006991.3	+1	reviewed	p.K591N	1.000	141	0%	148	29.1%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_C2H2 and C2HC zinc fingers
ZNF197	10168	genome.wustl.edu	37	3	44685100	44685100	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006991.3	+1	reviewed	p.V826	0.999	142	0%	163	30.1%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF502	91392	genome.wustl.edu	37	3	44763222	44763222	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134440.1	+1	validated	p.R305*	0.033	347	0%	321	33.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF502	91392	genome.wustl.edu	37	3	44763742	44763742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134440.1	+1	validated	p.L478P	0.018	174	0%	189	36.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KIF15	56992	genome.wustl.edu	37	3	44844445	44844445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020242.2	+1	validated	p.A550V	1.000	241	0%	255	32.5%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
KIF15	56992	genome.wustl.edu	37	3	44867677	44867677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020242.2	+1	validated	p.L899R	0.958	171	0%	141	37.6%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KIF15	56992	genome.wustl.edu	37	3	44879843	44879843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020242.2	+1	validated	p.S1083L	0.482	84	0%	90	33.3%	3	66.6%	benign(0.119)	tolerated(0.06)	neutral(0.332)	NULL
TGM4	7047	genome.wustl.edu	37	3	44943135	44943135	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003241.3	+1	validated	p.T259	0.000	25	0%	22	50%	0	-	-	-	-	superfamily_SSF54001
CLEC3B	7123	genome.wustl.edu	37	3	45077054	45077054	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003278.2	+1	validated	p.L83	1.000	67	0%	60	36.7%	2	0%	-	-	-	HMMSmart_SM00034,superfamily_C-type lectin-like
LARS2	23395	genome.wustl.edu	37	3	45527234	45527234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015340.3	+1	reviewed	p.P357S	1.000	232	0%	204	33.8%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ValRS_IleRS_edit,superfamily_SSF52374
FYCO1	79443	genome.wustl.edu	37	3	46003808	46003808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024513.2	-1	validated	p.R1116C	0.149	385	0%	287	30.7%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47030239	47030239	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015175.1	+1	validated	p.E44	1.000	80	0%	66	34.8%	1	0%	-	-	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47098948	47098948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014159.6	-1	reviewed	p.R2109Q	1.000	123	0%	126	27.8%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SETD2	29072	genome.wustl.edu	37	3	47127805	47127805	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014159.6	-1	reviewed	e11-1	1.000	82	0%	67	38.8%	0	-	-	-	-	-
KIF9	64147	genome.wustl.edu	37	3	47282434	47282434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134878.1	-1	validated	p.R594Q	1.000	160	0%	135	28.9%	2	50%	probably_damaging(0.969)	tolerated(0.43)	neutral(0.425)	NULL
MAP4	4134	genome.wustl.edu	37	3	47957590	47957590	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002375.4	-1	reviewed	p.V576G	0.002	390	0%	359	31.2%	70	35.7%	unknown(0)	deleterious(0)	-	NULL
PLXNB1	5364	genome.wustl.edu	37	3	48451889	48451889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130082.1	-1	validated	p.R1832H	1.000	33	0%	24	33.3%	27	51.8%	possibly_damaging(0.813)	deleterious(0.01)	deleterious(0.713)	PatternScan_LIPOCALIN,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
UQCRC1	7384	genome.wustl.edu	37	3	48638130	48638130	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003365.2	-1	validated	p.F370	1.000	134	0%	117	30.8%	623	45.7%	-	-	-	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
UQCRC1	7384	genome.wustl.edu	37	3	48641675	48641675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003365.2	-1	validated	p.E206A	1.000	120	0%	152	28.9%	494	45.5%	benign(0.002)	tolerated(0.06)	neutral(0.323)	superfamily_LuxS/MPP-like metallohydrolase
SLC26A6	65010	genome.wustl.edu	37	3	48663721	48663721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022911.2	-1	reviewed	p.F732S	1.000	34	0%	59	33.9%	21	52.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
SLC26A6	65010	genome.wustl.edu	37	3	48669454	48669454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000455886	-1	known	p.R169W	0.995	19	0%	23	26.1%	9	22.2%	unknown(0)	deleterious(0)	-	NULL
CELSR3	1951	genome.wustl.edu	37	3	48696431	48696431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001407.2	-1	reviewed	p.G1213S	1.000	53	0%	54	27.8%	4	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SLC25A20	788	genome.wustl.edu	37	3	48921496	48921496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000387.4	-1	reviewed	p.A87V	1.000	69	0%	90	37.8%	11	9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
WDR6	11180	genome.wustl.edu	37	3	49050826	49050826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018031.3	+1	reviewed	p.R650H	0.016	30	0%	30	36.7%	28	17.8%	possibly_damaging(0.723)	tolerated(0.14)	deleterious(0.512)	superfamily_WD40 repeat-like
IMPDH2	3615	genome.wustl.edu	37	3	49061970	49061970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000884.2	-1	reviewed	p.T494M	1.000	79	0%	70	34.3%	260	41.9%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_IMPDH,superfamily_SSF51412
QARS	5859	genome.wustl.edu	37	3	49137863	49137863	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005051.1	-1	reviewed	p.A335	0.972	53	0%	65	23.1%	173	41.6%	-	-	-	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
USP19	10869	genome.wustl.edu	37	3	49147789	49147789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006677.1	-1	provisional	p.R1186H	1.000	53	0%	48	29.2%	50	34%	probably_damaging(0.979)	tolerated(0.29)	neutral(0.451)	HMMPfam_UCH,superfamily_Cysteine proteinases
CCDC36	339834	genome.wustl.edu	37	3	49282143	49282143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135197.1	+1	validated	p.S170Y	1.000	66	0%	76	35.5%	1	0%	possibly_damaging(0.861)	tolerated(0.07)	deleterious(0.652)	NULL
DAG1	1605	genome.wustl.edu	37	3	49569754	49569754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004393.4	+1	reviewed	p.A604T	0.123	97	0%	72	34.7%	75	50.6%	benign(0.258)	tolerated(0.52)	neutral(0.036)	HMMPfam_DAG1
RBM6	10180	genome.wustl.edu	37	3	50006056	50006056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005777.2	+1	validated	p.D400Y	1.000	177	0%	214	31.8%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEMA3F	6405	genome.wustl.edu	37	3	50220902	50220902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004186.3	+1	validated	p.R380C	1.000	29	0%	19	47.4%	26	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CACNA2D2	9254	genome.wustl.edu	37	3	50418438	50418438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005505.1	-1	reviewed	p.R258C	1.000	27	0%	31	22.6%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA_N
DOCK3	1795	genome.wustl.edu	37	3	51266226	51266226	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004947.3	+1	validated	p.I594	1.000	112	0%	107	27.1%	0	-	-	-	-	NULL
ENSG00000250864	0	genome.wustl.edu	37	3	51431586	51431586	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000506856	-1	novel	NULL	0.547	22	0%	19	31.6%	73	36.9%	-	-	-	-
VPRBP	9730	genome.wustl.edu	37	3	51457860	51457860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014703.2	-1	validated	p.R802Q	1.000	172	0%	191	28.8%	11	72.7%	probably_damaging(0.976)	tolerated(0.14)	deleterious(0.667)	HMMSmart_SM00667,HMMPfam_LisH
VPRBP	9730	genome.wustl.edu	37	3	51517749	51517749	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014703.2	-1	validated	p.V32	0.998	339	0%	350	30%	4	25%	-	-	-	NULL
RAD54L2	23132	genome.wustl.edu	37	3	51669729	51669729	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000432863	+1	known	p.E250K	1.000	69	1.4%	50	26%	1	0%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD54L2	23132	genome.wustl.edu	37	3	51696692	51696692	+	Silent	SNP	C	C	T	rs142498948	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000432863	+1	known	p.R1049W	0.963	47	0%	70	34.3%	0	-	-	-	-	NULL
GRM2	2912	genome.wustl.edu	37	3	51746500	51746500	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000839.3	+1	reviewed	p.L154	1.000	24	0%	38	15.8%	0	-	-	-	-	HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,superfamily_Periplasmic binding protein-like I
GRM2	2912	genome.wustl.edu	37	3	51749695	51749695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000839.3	+1	reviewed	p.R636C	1.000	60	0%	85	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
GRM2	2912	genome.wustl.edu	37	3	51750015	51750015	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000839.3	+1	reviewed	p.C742*	1.000	54	0%	84	26.2%	0	-	-	-	-	HMMPfam_7tm_3
IQCF2	389123	genome.wustl.edu	37	3	51897136	51897136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203424.1	+1	validated	p.S82L	0.000	142	0%	184	32.6%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMSmart_IQ,superfamily_SSF52540
PARP3	10039	genome.wustl.edu	37	3	51978459	51978459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003931.2	+1	reviewed	p.K129N	1.000	62	0%	47	34%	12	58.3%	probably_damaging(0.964)	tolerated(0.5)	neutral(0.416)	HMMPfam_WGR,HMMSmart_WGR
ALAS1	211	genome.wustl.edu	37	3	52233336	52233336	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000688.4	+1	validated	p.L27	0.998	96	0%	85	35.3%	75	41.3%	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52428537	52428537	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015512.4	+1	validated	p.P3561	0.971	38	0%	36	41.7%	0	-	-	-	-	HMMPfam_Dynein_heavy
GNL3	26354	genome.wustl.edu	37	3	52727264	52727264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014366.4	+1	validated	p.A369D	1.000	165	0%	146	39%	47	25.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITIH3	3699	genome.wustl.edu	37	3	52842604	52842604	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002217.3	+1	validated	p.I860	0.000	107	0%	95	25.3%	0	-	-	-	-	HMMPfam_ITI_HC_C
ITIH4	3700	genome.wustl.edu	37	3	52848017	52848017	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000441637	-1	known	p.S688P	0.320	14	0%	19	26.3%	0	-	-	-	-	HMMPfam_ITI_HC_C
SFMBT1	51460	genome.wustl.edu	37	3	52945192	52945192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005158.1	-1	reviewed	p.Y578S	1.000	84	0%	100	34%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RFT1	91869	genome.wustl.edu	37	3	53155781	53155781	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052859.3	-1	reviewed	p.S164	0.001	59	0%	61	37.7%	14	21.4%	-	-	-	HMMPfam_Rft-1
CACNA1D	776	genome.wustl.edu	37	3	53837585	53837585	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000720.2	+1	validated	p.S1877	0.994	136	0%	102	32.4%	2	0%	-	-	-	NULL
IL17RB	55540	genome.wustl.edu	37	3	53899087	53899087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018725.3	+1	reviewed	p.D421Y	1.000	151	0%	132	27.3%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SEFIR
CACNA2D3	55799	genome.wustl.edu	37	3	54786663	54786663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018398.2	+1	reviewed	p.A402V	0.997	35	0%	38	34.2%	2	100%	benign(0.406)	deleterious(0.02)	deleterious(0.514)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CACNA2D3	55799	genome.wustl.edu	37	3	54933871	54933871	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018398.2	+1	reviewed	p.E809*	1.000	45	0%	25	20%	0	-	-	-	-	NULL
LRTM1	57408	genome.wustl.edu	37	3	54959101	54959101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020678.2	-1	provisional	p.P50H	1.000	104	0%	101	23.8%	0	-	benign(0.346)	tolerated(0.26)	neutral(0.144)	superfamily_L domain-like
CACNA2D3	55799	genome.wustl.edu	37	3	55021716	55021716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018398.2	+1	reviewed	p.D876Y	1.000	47	0%	46	23.9%	0	-	benign(0.027)	tolerated(0.06)	neutral(0.324)	NULL
ERC2	26059	genome.wustl.edu	37	3	55733440	55733440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015576.1	-1	validated	p.S938L	1.000	422	0%	471	30.8%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
ERC2	26059	genome.wustl.edu	37	3	55922477	55922477	+	Missense_Mutation	SNP	G	G	A	rs138285241	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015576.1	-1	validated	p.A835V	0.981	421	0%	353	29.2%	0	-	benign(0.018)	tolerated(0.28)	neutral(0.032)	HMMPfam_Cast
ERC2	26059	genome.wustl.edu	37	3	56114904	56114904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015576.1	-1	validated	p.R528C	1.000	83	0%	100	31%	0	-	probably_damaging(0.985)	tolerated(0.09)	deleterious(0.728)	superfamily_Prefoldin,HMMPfam_Cast
ERC2	26059	genome.wustl.edu	37	3	56468515	56468515	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015576.1	-1	validated	p.K174T	1.000	629	0%	598	29.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Cast
CCDC66	285331	genome.wustl.edu	37	3	56651313	56651313	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001141947.1	+1	validated	p.E673*	1.000	177	0%	131	32.1%	0	-	-	-	-	NULL
FAM208A	23272	genome.wustl.edu	37	3	56658665	56658665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001112736.1	-1	validated	p.N1442S	0.141	136	0%	92	32.6%	16	43.7%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
ASB14	142686	genome.wustl.edu	37	3	57310733	57310733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142733.2	-1	reviewed	p.L373V	0.030	93	0%	81	42%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_SOCS_box,HMMSmart_SM00253
ASB14	142686	genome.wustl.edu	37	3	57311864	57311864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142733.2	-1	reviewed	p.R342W	0.817	197	0%	93	41.9%	0	-	probably_damaging(0.953)	deleterious(0.02)	deleterious(0.780)	NULL
FLNB	2317	genome.wustl.edu	37	3	58108958	58108958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001457.3	+1	reviewed	p.D1089N	1.000	146	0%	116	25%	32	25%	possibly_damaging(0.875)	tolerated(0.08)	deleterious(0.640)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58109324	58109324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001457.3	+1	reviewed	p.E1211K	0.875	85	0%	48	37.5%	19	42.1%	possibly_damaging(0.785)	tolerated(0.48)	neutral(0.304)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
DNASE1L3	1776	genome.wustl.edu	37	3	58196517	58196517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004944.2	-1	reviewed	p.K39N	0.000	247	0%	229	28.8%	0	-	benign(0.03)	tolerated(0.09)	neutral(0.298)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like,HMMSmart_SM00476
ACOX2	8309	genome.wustl.edu	37	3	58514681	58514681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003500.3	-1	reviewed	p.D332G	0.967	211	0%	116	39.7%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	superfamily_AcylCoADH_C_like
FAM3D	131177	genome.wustl.edu	37	3	58622123	58622123	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138805.2	-1	validated	p.L161	0.120	87	0%	71	26.8%	4	0%	-	-	-	NULL
C3orf67	200844	genome.wustl.edu	37	3	58792129	58792129	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000486145	-1	known	p.*32E	1.000	133	0%	88	31.8%	0	-	-	-	-	NULL
C3orf67	200844	genome.wustl.edu	37	3	58870322	58870322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198463.2	-1	validated	p.R97C	0.977	228	0%	173	28.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PTPRG	5793	genome.wustl.edu	37	3	62204616	62204616	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002841.3	+1	reviewed	p.F749	1.000	192	0%	163	33.7%	14	64.2%	-	-	-	NULL
C3orf14	57415	genome.wustl.edu	37	3	62319035	62319035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020685.3	+1	predicted	p.N120H	0.025	164	0%	138	31.9%	2	0%	benign(0.156)	tolerated(0.16)	neutral(0.073)	NULL
CADPS	8618	genome.wustl.edu	37	3	62452083	62452083	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000473635	-1	known	p.N153S	0.996	47	0%	45	24.4%	2	0%	-	-	-	NULL
THOC7	80145	genome.wustl.edu	37	3	63825447	63825447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025075.2	-1	validated	p.E8K	1.000	64	0%	65	26.2%	46	45.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_THOC7
MAGI1	9223	genome.wustl.edu	37	3	65350539	65350539	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000460329	-1	known	p.P1000L	1.000	217	0%	194	29.4%	5	0%	-	-	-	NULL
MAGI1	9223	genome.wustl.edu	37	3	65416377	65416377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033057.1	-1	reviewed	p.T515A	1.000	183	0%	151	31.8%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
LRIG1	26018	genome.wustl.edu	37	3	66457778	66457778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015541.2	-1	validated	p.R358Q	0.990	46	0%	23	47.8%	57	40.3%	possibly_damaging(0.458)	tolerated(0.51)	neutral(0.159)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
LRIG1	26018	genome.wustl.edu	37	3	66460602	66460602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015541.2	-1	validated	p.A296T	0.926	143	0%	137	27.7%	54	55.5%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMSmart_SM00369,superfamily_L domain-like
LRIG1	26018	genome.wustl.edu	37	3	66465399	66465399	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015541.2	-1	validated	p.N198H	1.000	183	0%	168	30.4%	60	43.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
KBTBD8	84541	genome.wustl.edu	37	3	67053841	67053841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032505.2	+1	validated	p.Q124H	0.964	178	0%	158	33.5%	0	-	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	NULL
FAM19A1	407738	genome.wustl.edu	37	3	68466480	68466480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213609.2	+1	reviewed	p.R57C	1.000	157	0%	145	43.4%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TMF1	7110	genome.wustl.edu	37	3	69096784	69096785	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007114.2	-1	validated	p.I357fs	0.037:0.048	-	-	-	-	-	-	-	-	-	NULL
TMF1	7110	genome.wustl.edu	37	3	69097324	69097324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007114.2	-1	validated	p.E178K	0.837	375	0%	315	34.6%	8	62.5%	benign(0.02)	tolerated(0.22)	neutral(0.043)	NULL
FRMD4B	23150	genome.wustl.edu	37	3	69225804	69225804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015123.1	-1	validated	p.S952Y	1.000	87	0%	86	29.1%	8	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FRMD4B	23150	genome.wustl.edu	37	3	69299242	69299242	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015123.1	-1	validated	p.I170	0.671	270	0.4%	262	36.6%	0	-	-	-	-	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
MITF	4286	genome.wustl.edu	37	3	69928297	69928297	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198159.2	+1	reviewed	p.E39	1.000	79	0%	55	23.6%	0	-	-	-	-	NULL
FOXP1	27086	genome.wustl.edu	37	3	71021776	71021776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032682.4	-1	reviewed	p.N528H	1.000	161	0%	154	30.5%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
FOXP1	27086	genome.wustl.edu	37	3	71026154	71026154	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032682.4	-1	reviewed	p.E490*	1.000	104	0%	93	23.7%	10	0%	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
FOXP1	27086	genome.wustl.edu	37	3	71161692	71161692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032682.4	-1	reviewed	p.L93F	1.000	82	0%	89	25.8%	8	0%	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
RYBP	23429	genome.wustl.edu	37	3	72427728	72427728	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000477973	-1	known	p.R254C	1.000	125	0%	136	29.4%	19	15.7%	-	-	-	NULL
GXYLT2	727936	genome.wustl.edu	37	3	73004489	73004489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080393.1	+1	provisional	p.T281A	0.257	47	0%	46	23.9%	5	60%	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_Glyco_transf_8,superfamily_SSF53448
EBLN2	55096	genome.wustl.edu	37	3	73112027	73112027	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018029.3	+1	provisional	p.L265	0.000	455	0.2%	365	32.3%	0	-	-	-	-	HMMPfam_BDV_P40,superfamily_P40_nucleoprot_BD-vir
PDZRN3	23024	genome.wustl.edu	37	3	73440236	73440236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015009.1	-1	provisional	p.D429G	1.000	365	0%	288	31.6%	12	25%	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
CNTN3	5067	genome.wustl.edu	37	3	74313588	74313588	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020872.1	-1	validated	p.P1017	0.000	103	0%	103	39.8%	0	-	-	-	-	NULL
CNTN3	5067	genome.wustl.edu	37	3	74334517	74334517	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020872.1	-1	validated	p.A881	0.998	420	0%	306	26.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN3	5067	genome.wustl.edu	37	3	74334521	74334521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020872.1	-1	validated	p.R880Q	1.000	419	0%	307	35.2%	0	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN3	5067	genome.wustl.edu	37	3	74384052	74384052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020872.1	-1	validated	p.R501I	0.263	146	0%	143	29.4%	0	-	benign(0.053)	tolerated(0.16)	neutral(0.063)	HMMPfam_I-set,superfamily_Immunoglobulin
CNTN3	5067	genome.wustl.edu	37	3	74411104	74411104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020872.1	-1	validated	p.R434K	0.921	122	0%	109	26.6%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ZNF717	100131827	genome.wustl.edu	37	3	75786874	75786874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128223.1	-1	validated	p.L634I	0.109	29	0%	23	34.8%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ROBO2	6092	genome.wustl.edu	37	3	77629158	77629158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002942.3	+1	reviewed	p.R797W	1.000	110	0%	112	25.9%	5	40%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ROBO1	6091	genome.wustl.edu	37	3	78663819	78663819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002941.3	-1	reviewed	p.R1472C	1.000	29	0%	36	27.8%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GBE1	2632	genome.wustl.edu	37	3	81640278	81640278	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000158.3	-1	reviewed	p.D382G	1.000	50	0%	37	27%	22	27.2%	-	-	-	NULL
HTR1F	3355	genome.wustl.edu	37	3	88040053	88040053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000866.3	+1	validated	p.R52W	0.997	228	0%	172	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
HTR1F	3355	genome.wustl.edu	37	3	88040328	88040328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000866.3	+1	validated	p.M143I	1.000	107	0%	107	32.7%	0	-	benign(0.07)	deleterious(0.01)	neutral(0.411)	HMMPfam_7tm_1,superfamily_SSF81321
CGGBP1	8545	genome.wustl.edu	37	3	88105092	88105092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008390.1	-1	validated	p.R12Q	1.000	119	0%	107	26.2%	25	40%	possibly_damaging(0.666)	tolerated(0.18)	neutral(0.292)	NULL
ZNF654	55279	genome.wustl.edu	37	3	88189843	88189843	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018293.2	+1	validated	p.S461	0.958	286	0%	250	30%	3	66.6%	-	-	-	NULL
C3orf38	285237	genome.wustl.edu	37	3	88205426	88205426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000318887	+1	known	p.L211I	1.000	183	0%	123	27.6%	9	22.2%	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	superfamily_NTF2-like
EPHA3	2042	genome.wustl.edu	37	3	89259262	89259262	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005233.5	+1	reviewed	p.R136*	1.000	361	0%	299	28.4%	2	0%	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
EPHA3	2042	genome.wustl.edu	37	3	89259479	89259479	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005233.5	+1	reviewed	p.N208T	1.000	398	0%	369	29.8%	0	-	possibly_damaging(0.597)	deleterious(0.03)	deleterious(0.571)	NULL
PROS1	5627	genome.wustl.edu	37	3	93598159	93598159	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000313.3	-1	reviewed	e13-1	0.992	165	0%	165	30.3%	0	-	-	-	-	-
PROS1	5627	genome.wustl.edu	37	3	93615493	93615493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000313.3	-1	reviewed	p.E298*	1.000	298	0%	261	27.2%	2	0%	-	-	-	superfamily_ConA_like_lec_gl
ARL13B	200894	genome.wustl.edu	37	3	93722607	93722607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182896.2	+1	reviewed	p.R79W	1.000	211	0.5%	248	26.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
STX19	415117	genome.wustl.edu	37	3	93734103	93734103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001850.1	-1	provisional	p.R4Q	1.000	216	0%	203	26.1%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHFRL1	200895	genome.wustl.edu	37	3	93780144	93780144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176815.3	-1	provisional	p.R71I	1.000	272	0%	281	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHFR_1,superfamily_SSF53597
CRYBG3	131544	genome.wustl.edu	37	3	97595929	97595929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153605.2	+1	validated	p.R16I	0.000	180	0%	178	19.1%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
CRYBG3	131544	genome.wustl.edu	37	3	97607300	97607300	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153605.2	+1	validated	e6+1	1.000	61	0%	57	33.3%	0	-	-	-	-	-
MINA	84864	genome.wustl.edu	37	3	97664030	97664030	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042533.1	-1	validated	p.*466Q	0.980	259	0%	221	24.9%	9	33.3%	-	-	-	NULL
GABRR3	200959	genome.wustl.edu	37	3	97711707	97711707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000329044	-1	known	p.K137E	0.981	396	0%	429	29.4%	0	-	benign(0.025)	tolerated(0.76)	neutral(0.002)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
OR5H1	26341	genome.wustl.edu	37	3	97852205	97852205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005338.1	+1	provisional	p.L222I	0.170	239	0%	201	38.8%	0	-	probably_damaging(0.995)	tolerated(0.15)	deleterious(0.699)	HMMPfam_7tm_1,superfamily_SSF81321
OR5H6	79295	genome.wustl.edu	37	3	97983880	97983880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005479.1	+1	provisional	p.R251Q	0.001	173	0.6%	125	28%	0	-	benign(0.249)	tolerated(0.25)	neutral(0.062)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K4	403278	genome.wustl.edu	37	3	98073519	98073519	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005517.1	+1	provisional	p.F274L	0.997	899	0%	705	30.4%	0	-	benign(0.008)	tolerated(0.05)	neutral(0.345)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K3	403277	genome.wustl.edu	37	3	98110053	98110053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005516.1	+1	provisional	p.L182F	0.005	492	0%	439	28.7%	0	-	probably_damaging(0.976)	tolerated(0.17)	deleterious(0.477)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K3	403277	genome.wustl.edu	37	3	98110057	98110057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005516.1	+1	provisional	p.P183Q	0.083	499	0%	445	33.9%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K3	403277	genome.wustl.edu	37	3	98110319	98110319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005516.1	+1	provisional	p.I270M	0.170	392	0%	374	28.9%	0	-	benign(0.004)	tolerated(0.21)	neutral(0.044)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K1	26339	genome.wustl.edu	37	3	98189282	98189282	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004736.2	+1	provisional	p.F288V	0.947	258	0%	235	26.8%	0	-	possibly_damaging(0.52)	tolerated(0.07)	deleterious(0.494)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K2	402135	genome.wustl.edu	37	3	98216736	98216736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004737.1	+1	provisional	p.S71Y	0.483	415	0%	387	26.9%	0	-	possibly_damaging(0.939)	deleterious(0.02)	deleterious(0.768)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5K2	402135	genome.wustl.edu	37	3	98217289	98217289	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004737.1	+1	provisional	p.I255M	0.025	175	0%	193	32.6%	0	-	benign(0.084)	deleterious(0.01)	neutral(0.412)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5K2	402135	genome.wustl.edu	37	3	98217293	98217293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004737.1	+1	provisional	p.F257I	0.152	171	0%	190	30.5%	0	-	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5K2	402135	genome.wustl.edu	37	3	98217412	98217412	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004737.1	+1	provisional	p.E296D	0.998	132	0%	126	31.7%	0	-	probably_damaging(0.995)	tolerated(0.66)	neutral(0.460)	superfamily_Family A G protein-coupled receptor-like
GPR15	2838	genome.wustl.edu	37	3	98251081	98251081	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005290.1	+1	provisional	p.I68	0.951	108	0%	86	27.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CPOX	1371	genome.wustl.edu	37	3	98304462	98304462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000097.5	-1	reviewed	p.R332Q	1.000	186	0%	217	31.3%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Coprogen_oxidas,superfamily_Coprogen_oxidas,PatternScan_COPROGEN_OXIDASE
ST3GAL6	10402	genome.wustl.edu	37	3	98491702	98491702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006100.2	+1	provisional	p.K71N	0.462	215	0%	178	28.1%	11	63.6%	benign(0.005)	tolerated(0.05)	neutral(0.345)	HMMPfam_Glyco_transf_29
ST3GAL6	10402	genome.wustl.edu	37	3	98503843	98503843	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006100.2	+1	provisional	p.K130	0.999	111	0%	106	36.8%	6	33.3%	-	-	-	HMMPfam_Glyco_transf_29
DCBLD2	131566	genome.wustl.edu	37	3	98544195	98544195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080927.3	-1	validated	p.L196S	1.000	59	0%	48	29.2%	16	37.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
LNP1	348801	genome.wustl.edu	37	3	100170635	100170635	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085451.1	+1	validated	p.R77*	0.001	252	0%	216	30.1%	3	66.6%	-	-	-	NULL
LNP1	348801	genome.wustl.edu	37	3	100170756	100170756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085451.1	+1	validated	p.R117Q	0.080	242	0%	188	30.9%	4	25%	benign(0.001)	tolerated(0.61)	neutral(0.004)	NULL
TMEM45A	55076	genome.wustl.edu	37	3	100287723	100287723	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018004.1	+1	provisional	p.E216*	0.984	372	0%	374	35.6%	20	0%	-	-	-	HMMPfam_DUF716
TMEM45A	55076	genome.wustl.edu	37	3	100287794	100287794	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018004.1	+1	provisional	p.N239K	0.581	479	0%	434	34.1%	20	0%	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_DUF716
GPR128	84873	genome.wustl.edu	37	3	100364806	100364806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032787.2	+1	validated	p.G322S	1.000	67	0%	56	33.9%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
GPR128	84873	genome.wustl.edu	37	3	100378676	100378676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032787.2	+1	validated	p.Q656H	0.943	157	0%	104	20.2%	0	-	possibly_damaging(0.63)	tolerated(0.1)	deleterious(0.506)	HMMPfam_7tm_2
ABI3BP	25890	genome.wustl.edu	37	3	100494153	100494153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015429.3	-1	validated	p.T743A	0.471	45	0%	33	24.2%	2	0%	benign(0.251)	tolerated(0.36)	neutral(0.045)	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100585770	100585770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015429.3	-1	validated	p.E321G	1.000	55	0%	59	27.1%	1	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100585771	100585771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015429.3	-1	validated	p.E321K	1.000	55	0%	59	39%	1	0%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
IMPG2	50939	genome.wustl.edu	37	3	100962570	100962570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016247.2	-1	validated	p.S869A	0.804	311	0%	276	31.2%	0	-	benign(0.031)	tolerated(0.08)	neutral(0.301)	NULL
IMPG2	50939	genome.wustl.edu	37	3	100962659	100962659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016247.2	-1	validated	p.S839L	1.000	490	0%	396	14.4%	2	0%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
IMPG2	50939	genome.wustl.edu	37	3	100963572	100963572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016247.2	-1	validated	p.S535P	0.000	447	0%	397	32.2%	0	-	benign(0)	tolerated(1)	-	NULL
IMPG2	50939	genome.wustl.edu	37	3	101038524	101038524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016247.2	-1	validated	p.R80W	0.072	362	0%	258	36%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SENP7	57337	genome.wustl.edu	37	3	101066847	101066847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020654.3	-1	validated	p.R569Q	1.000	630	0%	568	24.5%	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
RG9MTD1	54931	genome.wustl.edu	37	3	101284280	101284280	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017819.2	+1	provisional	p.E219*	0.997	160	0%	162	34.6%	46	56.5%	-	-	-	HMMPfam_tRNA_m1G_MT
LOC100287880	100287880	genome.wustl.edu	37	3	102959890	102959890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342391.1	+1	model	p.V38I	0.030	61	0%	53	24.5%	0	-	-	-	-	HMMPfam_NADH_ub_rd_NUML
CBLB	868	genome.wustl.edu	37	3	105438963	105438963	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170662.3	-1	validated	p.P445	0.000	116	0%	91	26.4%	7	0%	-	-	-	NULL
CBLB	868	genome.wustl.edu	37	3	105464791	105464791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170662.3	-1	validated	p.R272Q	0.996	258	0%	233	29.6%	7	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cbl_N3,superfamily_SH2 domain
DZIP3	9666	genome.wustl.edu	37	3	108393004	108393004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014648.3	+1	validated	p.A890V	1.000	231	0%	185	30.3%	4	75%	possibly_damaging(0.746)	deleterious(0.01)	deleterious(0.679)	NULL
RETNLB	84666	genome.wustl.edu	37	3	108475404	108475404	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032579.2	-1	validated	p.L53	0.009	75	0%	73	27.4%	1	0%	-	-	-	HMMPfam_Resistin,superfamily_Resistin
RETNLB	84666	genome.wustl.edu	37	3	108476008	108476008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032579.2	-1	validated	p.L9I	0.732	79	0%	64	20.3%	0	-	possibly_damaging(0.697)	tolerated(0.06)	deleterious(0.573)	HMMPfam_Resistin
PVRL3	25945	genome.wustl.edu	37	3	110837539	110837539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015480.1	+1	provisional	p.S180Y	1.000	130	0%	126	30.2%	0	-	benign(0.367)	deleterious(0.01)	deleterious(0.522)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
PHLDB2	90102	genome.wustl.edu	37	3	111603011	111603011	+	Silent	SNP	C	C	T	rs147548065	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134438.1	+1	validated	p.N29	0.039	539	0%	454	28.9%	0	-	-	-	-	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111603136	111603136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134438.1	+1	validated	p.S71I	1.000	708	0.1%	593	29%	1	0%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111604254	111604254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134438.1	+1	validated	p.R444*	1.000	140	0%	146	27.4%	2	0%	-	-	-	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111671493	111671493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134438.1	+1	validated	p.K902N	1.000	139	0%	150	34%	4	0%	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	NULL
TMPRSS7	344805	genome.wustl.edu	37	3	111799768	111799768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042575.2	+1	validated	p.S664L	1.000	173	0%	132	50.8%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_SER
C3orf52	79669	genome.wustl.edu	37	3	111821743	111821743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024616.2	+1	validated	p.F109L	0.998	34	0%	39	56.4%	3	0%	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111985096	111985096	+	Silent	SNP	T	T	G	rs111630726		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183061.1	-1	validated	p.T289	0.004	237	0%	195	32.3%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
ATG3	64422	genome.wustl.edu	37	3	112253160	112253160	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022488.3	-1	provisional	p.I273	0.989	236	0%	163	30.1%	67	26.8%	-	-	-	NULL
CD200R1	131450	genome.wustl.edu	37	3	112666716	112666716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138806.3	-1	reviewed	p.E41D	0.000	112	0%	75	33.3%	0	-	benign(0.181)	tolerated(0.68)	neutral(0.019)	NULL
C3orf17	25871	genome.wustl.edu	37	3	112724694	112724694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015412.3	-1	validated	p.L465I	0.243	140	0%	137	29.2%	17	47%	possibly_damaging(0.555)	deleterious(0)	deleterious(0.634)	NULL
WDR52	55779	genome.wustl.edu	37	3	113092365	113092365	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018338.3	-1	validated	p.F779	0.958	157	0%	142	31%	0	-	-	-	-	superfamily_WD40_like
SPICE1	152185	genome.wustl.edu	37	3	113165463	113165463	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000467618	-1	known	p.D163G	0.045	89	0%	57	28.1%	9	33.3%	-	-	-	NULL
LOC100288429	100288429	genome.wustl.edu	37	3	113252051	113252051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342394.1	-1	model	p.L112F	1.000	32	0%	30	13.3%	0	-	-	-	-	NULL
SIDT1	54847	genome.wustl.edu	37	3	113321949	113321949	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017699.2	+1	validated	p.F405	0.106	71	0%	95	27.4%	1	0%	-	-	-	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113374187	113374187	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009899.2	-1	validated	p.Y2114*	0.991	170	0%	175	25.1%	1	0%	-	-	-	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113374248	113374248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009899.2	-1	validated	p.R2094Q	1.000	131	0%	174	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAA50	80218	genome.wustl.edu	37	3	113442890	113442890	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025146.1	-1	provisional	p.R21	1.000	161	0%	177	33.3%	63	41.2%	-	-	-	superfamily_Acyl-CoA N-acyltransferases (Nat)
KIAA1407	57577	genome.wustl.edu	37	3	113765538	113765538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020817.1	-1	predicted	p.F57L	0.070	163	0%	180	23.9%	0	-	benign(0.144)	deleterious(0.02)	neutral(0.396)	NULL
ZNF80	7634	genome.wustl.edu	37	3	113955340	113955340	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007136.3	-1	validated	p.C194	0.443	147	0%	100	19%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF80	7634	genome.wustl.edu	37	3	113955646	113955646	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007136.3	-1	validated	p.F92	0.000	75	0%	55	36.4%	0	-	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZBTB20	26137	genome.wustl.edu	37	3	114069181	114069181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015642.4	-1	validated	p.L509I	1.000	125	0%	101	20.8%	0	-	benign(0.409)	tolerated(0.37)	neutral(0.151)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
IGSF11	152404	genome.wustl.edu	37	3	118621425	118621425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001015887.1	-1	validated	p.R413Q	1.000	318	0%	239	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C3orf30	152405	genome.wustl.edu	37	3	118865432	118865432	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000460150	+1	known	p.S96A	0.002	164	0%	149	27.5%	0	-	-	-	-	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119102036	119102036	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020754.2	+1	reviewed	p.I215	1.000	218	0%	163	33.7%	2	0%	-	-	-	superfamily_GTPase activation domain GAP
ARHGAP31	57514	genome.wustl.edu	37	3	119135033	119135033	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020754.2	+1	reviewed	p.E1419	1.000	406	0%	243	35%	4	0%	-	-	-	NULL
TMEM39A	55254	genome.wustl.edu	37	3	119153648	119153648	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018266.1	-1	provisional	p.N398	0.996	193	0%	204	30.9%	15	26.6%	-	-	-	HMMPfam_Tmp39
TMEM39A	55254	genome.wustl.edu	37	3	119165993	119165993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018266.1	-1	provisional	p.M149I	1.000	230	0%	225	33.8%	13	46.1%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Tmp39
C3orf15	89876	genome.wustl.edu	37	3	119462960	119462960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033364.3	+1	validated	p.R607W	1.000	60	0%	52	21.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C3orf15	89876	genome.wustl.edu	37	3	119466022	119466022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033364.3	+1	validated	p.E655K	0.637	196	0%	161	30.4%	0	-	benign(0.158)	tolerated(0.24)	neutral(0.051)	NULL
GSK3B	2932	genome.wustl.edu	37	3	119595266	119595266	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002093.3	-1	reviewed	p.W301*	1.000	191	0%	173	23.1%	22	9%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GSK3B	2932	genome.wustl.edu	37	3	119666136	119666136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002093.3	-1	reviewed	p.F115L	1.000	270	0%	200	21.5%	8	87.5%	possibly_damaging(0.583)	tolerated(0.06)	deleterious(0.523)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GPR156	165829	genome.wustl.edu	37	3	119886865	119886865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153002.2	-1	validated	p.C487R	0.001	236	0%	204	27%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
LRRC58	116064	genome.wustl.edu	37	3	120053798	120053798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099678.1	-1	validated	p.R273Q	0.998	66	0%	45	35.6%	3	33.3%	benign(0.279)	tolerated(0.71)	neutral(0.032)	superfamily_SSF52058
GTF2E1	2960	genome.wustl.edu	37	3	120500127	120500127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005513.2	+1	validated	p.R377Q	0.000	291	0%	253	32.4%	5	40%	benign(0.003)	tolerated(0.59)	neutral(0.004)	NULL
STXBP5L	9515	genome.wustl.edu	37	3	120973887	120973887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014980.2	+1	validated	p.F529L	0.997	81	0%	68	22.1%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
STXBP5L	9515	genome.wustl.edu	37	3	121132070	121132070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014980.2	+1	validated	p.R1029Q	1.000	181	0.6%	145	33.1%	0	-	possibly_damaging(0.951)	tolerated(0.25)	neutral(0.431)	NULL
POLQ	10721	genome.wustl.edu	37	3	121151871	121151871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199420.3	-1	validated	p.R2518Q	0.000	85	0%	73	24.7%	3	66.6%	possibly_damaging(0.761)	tolerated(0.1)	deleterious(0.569)	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases
POLQ	10721	genome.wustl.edu	37	3	121209199	121209199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199420.3	-1	validated	p.R860Q	1.000	228	0%	213	32.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ARGFX	503582	genome.wustl.edu	37	3	121289572	121289572	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012659.1	+1	validated	p.R4	0.000	290	0%	254	29.1%	0	-	-	-	-	NULL
FBXO40	51725	genome.wustl.edu	37	3	121341111	121341111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016298.3	+1	validated	p.R279C	0.000	172	0%	162	37%	0	-	possibly_damaging(0.768)	tolerated(0.05)	deleterious(0.630)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121409630	121409630	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004487.3	-1	validated	p.R2856*	0.994	99	0%	88	31.8%	5	20%	-	-	-	superfamily_Prefoldin
GOLGB1	2804	genome.wustl.edu	37	3	121413027	121413027	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004487.3	-1	validated	p.E2110*	1.000	587	0%	487	31.2%	5	0%	-	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121416930	121416930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004487.3	-1	validated	p.D809Y	1.000	296	0%	269	27.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ILDR1	286676	genome.wustl.edu	37	3	121707072	121707072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000383663	-1	known	p.F212V	0.011	32	0%	33	18.2%	6	0%	unknown(0)	-	-	NULL
CD86	942	genome.wustl.edu	37	3	121828238	121828238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175862.3	+1	reviewed	p.R277H	0.000	298	0%	249	27.7%	12	0%	probably_damaging(0.977)	tolerated(0.16)	deleterious(0.478)	NULL
CD86	942	genome.wustl.edu	37	3	121838342	121838342	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000478741	+1	known	p.E265K	0.001	122	0%	108	18.5%	12	0%	-	-	-	NULL
CASR	846	genome.wustl.edu	37	3	122003100	122003100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000388.3	+1	reviewed	p.E767K	1.000	83	0%	108	20.4%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_7tm_3
KPNA1	3836	genome.wustl.edu	37	3	122146516	122146516	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002264.3	-1	reviewed	p.T433R	1.000	177	0%	138	21.7%	16	37.5%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
KPNA1	3836	genome.wustl.edu	37	3	122215398	122215398	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002264.3	-1	reviewed	p.G5	1.000	198	0%	189	27.5%	4	0%	-	-	-	HMMPfam_IBB
PARP9	83666	genome.wustl.edu	37	3	122255171	122255171	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031458.2	-1	validated	p.E677*	0.000	713	0%	713	32.3%	15	13.3%	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
PARP15	165631	genome.wustl.edu	37	3	122335976	122335976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113523.1	+1	validated	p.V322A	1.000	209	0%	266	31.2%	0	-	benign(0.293)	deleterious(0)	deleterious(0.535)	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
PARP14	54625	genome.wustl.edu	37	3	122419058	122419058	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017554.2	+1	validated	p.E553*	0.018	71	0%	75	32%	1	0%	-	-	-	NULL
PARP14	54625	genome.wustl.edu	37	3	122419393	122419393	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017554.2	+1	validated	p.F664	0.002	70	0%	75	38.7%	1	0%	-	-	-	NULL
PARP14	54625	genome.wustl.edu	37	3	122437068	122437068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017554.2	+1	validated	p.K1384R	0.972	107	0%	102	33.3%	10	0%	benign(0.063)	tolerated(0.3)	neutral(0.033)	superfamily_Macro domain-like
ADCY5	111	genome.wustl.edu	37	3	123044269	123044269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183357.1	-1	validated	p.R663I	1.000	105	0%	81	29.6%	3	66.6%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_DUF1053
ROPN1	54763	genome.wustl.edu	37	3	123695794	123695794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017578.2	-1	provisional	p.P51S	1.000	170	0%	163	26.4%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
KALRN	8997	genome.wustl.edu	37	3	124129085	124129085	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000393499	+1	known	p.F149	0.002	85	0%	77	28.6%	0	-	-	-	-	NULL
KALRN	8997	genome.wustl.edu	37	3	124165105	124165105	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000354186	+1	known	p.S1104L	1.000	126	0%	102	20.6%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124209704	124209704	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000354186	+1	known	p.R1487Q	0.808	54	0%	80	35%	2	50%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KALRN	8997	genome.wustl.edu	37	3	124397059	124397059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024660.3	+1	reviewed	p.L2406I	1.000	204	0%	177	29.9%	1	0%	probably_damaging(0.971)	tolerated(0.08)	deleterious(0.713)	NULL
ITGB5	3693	genome.wustl.edu	37	3	124527919	124527919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002213.3	-1	provisional	p.V405I	0.000	237	0%	201	30.8%	53	43.3%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF69179
MUC13	56667	genome.wustl.edu	37	3	124641092	124641092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033049.2	-1	validated	p.E231D	0.001	137	0%	120	29.2%	3	0%	possibly_damaging(0.868)	tolerated(1)	neutral(0.337)	HMMPfam_SEA
HEG1	57493	genome.wustl.edu	37	3	124689614	124689614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020733.1	-1	validated	p.R1343Q	1.000	44	0%	35	14.3%	5	0%	possibly_damaging(0.871)	deleterious(0)	deleterious(0.783)	NULL
SLC12A8	84561	genome.wustl.edu	37	3	124826772	124826772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024628.5	-1	validated	p.L420F	0.003	179	0%	187	13.4%	1	0%	benign(0.179)	tolerated(0.74)	neutral(0.018)	NULL
SNX4	8723	genome.wustl.edu	37	3	125172687	125172687	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003794.2	-1	reviewed	p.E386A	1.000	335	0%	259	33.6%	33	42.4%	possibly_damaging(0.88)	tolerated(0.14)	deleterious(0.593)	NULL
OSBPL11	114885	genome.wustl.edu	37	3	125271062	125271062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022776.4	-1	reviewed	p.F539L	1.000	164	0%	136	27.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Oxysterol_BP
OSBPL11	114885	genome.wustl.edu	37	3	125297839	125297839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022776.4	-1	reviewed	p.I152V	1.000	194	0%	159	28.9%	4	75%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CCDC37	348807	genome.wustl.edu	37	3	126138549	126138549	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182628.2	+1	validated	p.S267	0.213	61	0%	51	39.2%	1	0%	-	-	-	NULL
C3orf22	152065	genome.wustl.edu	37	3	126272151	126272151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152533.1	-1	predicted	p.P28L	0.460	261	0%	235	25.1%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126751319	126751319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032242.3	+1	validated	p.S1751L	1.000	45	0%	22	31.8%	27	40.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
MCM2	4171	genome.wustl.edu	37	3	127327768	127327768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004526.2	+1	reviewed	p.V444M	0.995	207	0%	218	35.8%	42	52.3%	benign(0.109)	deleterious(0.01)	neutral(0.414)	HMMSmart_MCM
KBTBD12	166348	genome.wustl.edu	37	3	127642361	127642361	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207335.2	+1	validated	p.K153*	0.670	102	0%	95	28.4%	0	-	-	-	-	HMMPfam_BACK
RAB7A	7879	genome.wustl.edu	37	3	128516801	128516801	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004637.5	+1	reviewed	p.S23	0.939	168	0%	131	39.7%	252	50.3%	-	-	-	HMMSmart_SM00176,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ISY1	57461	genome.wustl.edu	37	3	128878015	128878015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020701.2	-1	provisional	p.R3Q	1.000	112	0%	113	29.2%	23	21.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Isy1
MBD4	8930	genome.wustl.edu	37	3	129155690	129155690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003925.1	-1	reviewed	p.S266Y	0.001	258	0%	225	29.8%	11	0%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
IFT122	55764	genome.wustl.edu	37	3	129200408	129200408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000454840	+1	known	p.R306C	0.855	109	0%	115	27.8%	6	50%	-	-	-	NULL
COL6A5	256076	genome.wustl.edu	37	3	130202995	130202995	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_022012.1	+1	validated	NULL	0.006	21	0%	18	22.2%	0	-	-	-	-	-
COL6A6	131873	genome.wustl.edu	37	3	130289762	130289762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102608.1	+1	provisional	p.G834	0.000	89	0%	93	43%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130300744	130300744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102608.1	+1	provisional	p.G1296E	1.000	382	0%	351	27.9%	0	-	probably_damaging(0.961)	tolerated(0.12)	deleterious(0.665)	HMMSmart_SM00327,superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130313129	130313129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102608.1	+1	provisional	p.S1492N	0.997	65	0%	65	29.2%	0	-	benign(0.099)	tolerated(0.45)	neutral(0.019)	HMMPfam_Collagen
COL6A6	131873	genome.wustl.edu	37	3	130354551	130354551	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102608.1	+1	provisional	p.I1679	0.006	24	0%	20	40%	0	-	-	-	-	HMMPfam_Collagen
PIK3R4	30849	genome.wustl.edu	37	3	130400358	130400358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014602.2	-1	validated	p.A1229T	1.000	244	0%	161	28%	23	34.7%	benign(0.006)	tolerated(0.74)	neutral(0.002)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
ATP2C1	27032	genome.wustl.edu	37	3	130720167	130720167	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000504612	+1	known	p.R865Q	0.000	166	0%	114	25.4%	99	43.4%	-	-	-	NULL
ASTE1	28990	genome.wustl.edu	37	3	130743722	130743722	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014065.2	-1	validated	p.R143	1.000	103	0%	119	27.7%	5	20%	-	-	-	superfamily_SSF88723
NEK11	79858	genome.wustl.edu	37	3	130884308	130884308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024800.4	+1	reviewed	p.R374Q	0.538	97	0%	93	25.8%	4	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
NEK11	79858	genome.wustl.edu	37	3	130947485	130947485	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024800.4	+1	reviewed	p.E505*	0.001	385	0%	312	33%	3	0%	-	-	-	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132222104	132222104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015268.3	+1	validated	p.R1588H	1.000	121	0%	121	27.3%	6	16.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_ARM repeat
CCRL1	51554	genome.wustl.edu	37	3	132319323	132319323	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016557.2	+1	reviewed	p.E28*	1.000	202	0%	158	27.2%	0	-	-	-	-	superfamily_SSF81321
ACAD11	84129	genome.wustl.edu	37	3	132349323	132349323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032169.4	-1	validated	p.F307L	1.000	132	0%	106	25.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
NPHP3	27031	genome.wustl.edu	37	3	132402257	132402257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153240.3	-1	reviewed	p.L1228I	0.992	103	0%	63	28.6%	2	50%	benign(0.161)	deleterious(0.04)	neutral(0.363)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
NPHP3	27031	genome.wustl.edu	37	3	132433960	132433960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153240.3	-1	reviewed	p.E309G	1.000	176	0%	151	31.1%	2	0%	probably_damaging(0.994)	tolerated(0.21)	deleterious(0.496)	NULL
BFSP2	8419	genome.wustl.edu	37	3	133119095	133119095	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003571.2	+1	reviewed	p.V56	0.984	30	0%	49	32.7%	0	-	-	-	-	NULL
BFSP2	8419	genome.wustl.edu	37	3	133169167	133169167	+	Silent	SNP	A	A	G	rs181275910	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003571.2	+1	reviewed	p.K250	0.872	182	0%	158	23.4%	0	-	-	-	-	HMMPfam_Filament
BFSP2	8419	genome.wustl.edu	37	3	133169266	133169266	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003571.2	+1	reviewed	p.V283	0.000	158	0%	139	33.1%	2	0%	-	-	-	HMMPfam_Filament
BFSP2	8419	genome.wustl.edu	37	3	133169275	133169275	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003571.2	+1	reviewed	p.N286	0.999	145	0%	131	21.4%	2	0%	-	-	-	HMMPfam_Filament
TOPBP1	11073	genome.wustl.edu	37	3	133342920	133342920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007027.3	-1	reviewed	p.I968M	0.998	195	0%	171	31%	8	12.5%	possibly_damaging(0.747)	deleterious(0.02)	deleterious(0.657)	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
TOPBP1	11073	genome.wustl.edu	37	3	133371369	133371369	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007027.3	-1	reviewed	p.N343H	0.982	81	0%	69	20.3%	2	50%	possibly_damaging(0.848)	tolerated(0.12)	deleterious(0.586)	NULL
RAB6B	51560	genome.wustl.edu	37	3	133557034	133557034	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016577.3	-1	validated	p.A157	0.016	92	0%	85	27.1%	1	0%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLCO2A1	6578	genome.wustl.edu	37	3	133673841	133673841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005630.2	-1	validated	p.F198L	0.761	49	0%	48	37.5%	3	33.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
ANAPC13	25847	genome.wustl.edu	37	3	134201661	134201661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015391.3	-1	reviewed	p.V29A	1.000	237	0%	174	20.1%	33	36.3%	benign(0.003)	deleterious(0)	neutral(0.445)	HMMPfam_Apc13p
EPHB1	2047	genome.wustl.edu	37	3	134885783	134885783	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004441.4	+1	reviewed	e9-1	1.000	361	0%	207	25.1%	0	-	-	-	-	-
EPHB1	2047	genome.wustl.edu	37	3	134977910	134977910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004441.4	+1	reviewed	p.S968I	1.000	72	0%	69	34.8%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
PPP2R3A	5523	genome.wustl.edu	37	3	135745859	135745859	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002718.3	+1	reviewed	p.Q727H	0.922	188	0%	218	34.9%	0	-	possibly_damaging(0.794)	tolerated(0.12)	deleterious(0.558)	superfamily_EF-hand
MSL2	55167	genome.wustl.edu	37	3	135870121	135870121	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018133.3	-1	validated	p.I534	0.998	121	0%	98	28.6%	8	50%	-	-	-	NULL
MSL2	55167	genome.wustl.edu	37	3	135871065	135871065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018133.3	-1	validated	p.V220I	1.000	148	0%	128	31.2%	16	43.7%	benign(0.247)	tolerated(0.85)	neutral(0.026)	NULL
STAG1	10274	genome.wustl.edu	37	3	136139969	136139969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005862.2	-1	reviewed	p.L692I	1.000	102	0%	118	28.8%	4	25%	benign(0.269)	tolerated(0.29)	neutral(0.058)	superfamily_ARM-type_fold
SLC35G2	80723	genome.wustl.edu	37	3	136574248	136574248	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001097599.1	+1	validated	p.E316*	1.000	645	0%	654	31.5%	26	57.6%	-	-	-	HMMPfam_DUF6,superfamily_SSF103481
NCK1	4690	genome.wustl.edu	37	3	136646968	136646968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006153.3	+1	reviewed	p.R42Q	1.000	186	0%	168	28%	19	21%	possibly_damaging(0.687)	tolerated(0.42)	neutral(0.260)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
SOX14	8403	genome.wustl.edu	37	3	137484324	137484324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004189.2	+1	reviewed	p.S233L	1.000	63	0%	32	28.1%	0	-	benign(0.429)	tolerated(0.22)	neutral(0.182)	NULL
CLDN18	51208	genome.wustl.edu	37	3	137743454	137743454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002026.2	+1	validated	p.C131G	0.990	268	0%	209	26.8%	0	-	benign(0.182)	deleterious(0.01)	neutral(0.422)	HMMPfam_PMP22_Claudin
DZIP1L	199221	genome.wustl.edu	37	3	137811331	137811331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173543.2	-1	validated	p.W255L	1.000	333	0%	261	24.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARMC8	25852	genome.wustl.edu	37	3	137993338	137993338	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015396.3	+1	validated	p.A545	0.785	185	0%	131	26%	11	27.2%	-	-	-	HMMSmart_ARM,superfamily_ARM-type_fold
NME9	347736	genome.wustl.edu	37	3	138023769	138023769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178130.2	-1	provisional	p.R185Q	0.445	194	0%	155	32.9%	0	-	benign(0.25)	tolerated(0.13)	neutral(0.278)	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK
ESYT3	83850	genome.wustl.edu	37	3	138187557	138187557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031913.3	+1	validated	p.P457S	1.000	138	0%	137	35.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CEP70	80321	genome.wustl.edu	37	3	138248056	138248056	+	Missense_Mutation	SNP	T	T	G	rs139123944	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024491.2	-1	validated	p.K285T	1.000	195	0.5%	188	35.6%	9	44.4%	possibly_damaging(0.763)	deleterious(0.05)	deleterious(0.628)	NULL
CEP70	80321	genome.wustl.edu	37	3	138289984	138289984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024491.2	-1	validated	p.D59G	1.000	105	0%	106	23.6%	7	42.8%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
PIK3CB	5291	genome.wustl.edu	37	3	138376574	138376574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006219.1	-1	provisional	p.V967A	1.000	203	0%	141	36.9%	18	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
PRR23A	729627	genome.wustl.edu	37	3	138724664	138724664	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134659.1	-1	validated	p.I149	0.000	23	0%	27	37%	0	-	-	-	-	HMMPfam_DUF2476
MRPS22	56945	genome.wustl.edu	37	3	139071596	139071596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020191.2	+1	reviewed	p.K280N	0.905	152	0%	131	26%	70	45.7%	possibly_damaging(0.563)	tolerated(0.16)	neutral(0.252)	HMMPfam_MRP-S22
CLSTN2	64084	genome.wustl.edu	37	3	140251312	140251312	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022131.2	+1	validated	p.V497	0.887	146	0%	150	28.7%	1	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
CLSTN2	64084	genome.wustl.edu	37	3	140275400	140275400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022131.2	+1	validated	p.D574N	0.999	329	0%	260	28.1%	1	0%	possibly_damaging(0.838)	tolerated(0.51)	neutral(0.329)	NULL
CLSTN2	64084	genome.wustl.edu	37	3	140281088	140281088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022131.2	+1	validated	p.H717R	1.000	184	0%	151	23.8%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
SPSB4	92369	genome.wustl.edu	37	3	140866029	140866029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080862.1	+1	provisional	p.S247L	0.009	59	0%	50	40%	2	100%	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_SOCS_box
ZBTB38	253461	genome.wustl.edu	37	3	141162657	141162657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080412.2	+1	validated	p.R476Q	0.999	114	0%	138	13%	3	66.6%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC729687	729687	genome.wustl.edu	37	3	141583990	141583990	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001133695.3	-1	model	p.A44	0.991	71	0%	74	21.6%	1	0%	-	-	-	HMMPfam_HMG14_17,HMMSmart_SM00527
TFDP2	7029	genome.wustl.edu	37	3	141692961	141692961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006286.4	-1	reviewed	p.S138T	1.000	174	0%	129	24.8%	21	76.1%	possibly_damaging(0.481)	tolerated(0.12)	neutral(0.420)	HMMPfam_E2F_TDP,superfamily_SSF46785
XRN1	54464	genome.wustl.edu	37	3	142075801	142075801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019001.3	-1	validated	p.L1209V	0.651	204	0%	164	36.6%	1	0%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ATR	545	genome.wustl.edu	37	3	142269003	142269003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001184.3	-1	reviewed	p.D983N	1.000	196	0%	177	36.2%	1	0%	possibly_damaging(0.574)	tolerated(0.23)	neutral(0.239)	superfamily_ARM repeat
TRPC1	7220	genome.wustl.edu	37	3	142499822	142499822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003304.4	+1	validated	p.R270I	1.000	121	0%	109	26.6%	2	0%	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	NULL
TRPC1	7220	genome.wustl.edu	37	3	142503813	142503813	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003304.4	+1	validated	p.E376*	1.000	75	0%	83	21.7%	0	-	-	-	-	NULL
TRPC1	7220	genome.wustl.edu	37	3	142511762	142511762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003304.4	+1	validated	p.R478C	1.000	268	0%	217	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans
SLC9A9	285195	genome.wustl.edu	37	3	143100950	143100950	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173653.3	-1	reviewed	p.G492	0.944	320	0%	163	33.1%	1	0%	-	-	-	NULL
PLSCR4	57088	genome.wustl.edu	37	3	145914484	145914484	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020353.2	-1	validated	p.E241*	0.989	187	0%	162	29%	4	0%	-	-	-	HMMPfam_Scramblase
PLSCR4	57088	genome.wustl.edu	37	3	145917752	145917752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020353.2	-1	validated	p.E158K	0.998	66	0%	56	32.1%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Scramblase
PLSCR2	57047	genome.wustl.edu	37	3	146173172	146173172	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020359.1	-1	provisional	p.E59*	0.997	159	0%	133	32.3%	0	-	-	-	-	HMMPfam_Scramblase
PLSCR1	5359	genome.wustl.edu	37	3	146239685	146239685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021105.2	-1	validated	p.E171*	1.000	127	0%	103	30.1%	21	0%	-	-	-	HMMPfam_Scramblase
PLSCR1	5359	genome.wustl.edu	37	3	146246443	146246443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021105.2	-1	validated	p.Q90H	0.084	191	0%	167	32.3%	19	15.7%	possibly_damaging(0.904)	tolerated(0.16)	neutral(0.418)	HMMPfam_Scramblase
PLSCR5	389158	genome.wustl.edu	37	3	146307490	146307490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085420.1	-1	validated	p.D243Y	1.000	207	0%	180	31.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Scramblase
HLTF	6596	genome.wustl.edu	37	3	148756855	148756855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003071.3	-1	reviewed	p.R926Q	1.000	147	0%	123	23.6%	11	36.3%	possibly_damaging(0.847)	tolerated(0.19)	neutral(0.374)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
HLTF	6596	genome.wustl.edu	37	3	148757913	148757913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003071.3	-1	reviewed	p.D803Y	0.994	84	0%	74	29.7%	10	80%	possibly_damaging(0.708)	deleterious(0.03)	deleterious(0.620)	superfamily_RING/U-box
HLTF	6596	genome.wustl.edu	37	3	148793777	148793777	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003071.3	-1	reviewed	p.N96H	1.000	96	0%	104	30.8%	4	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HIRAN
HLTF	6596	genome.wustl.edu	37	3	148802507	148802507	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003071.3	-1	reviewed	p.R64	1.000	108	0%	101	29.7%	8	37.5%	-	-	-	HMMPfam_HIRAN
HPS3	84343	genome.wustl.edu	37	3	148857833	148857833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032383.3	+1	reviewed	p.F87C	0.909	240	0%	261	31%	5	60%	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	NULL
HPS3	84343	genome.wustl.edu	37	3	148858132	148858132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032383.3	+1	reviewed	p.T187A	0.079	283	0%	295	24.1%	6	50%	benign(0.009)	tolerated(0.29)	neutral(0.030)	NULL
CP	1356	genome.wustl.edu	37	3	148927028	148927028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000096.3	-1	reviewed	p.E251K	0.936	410	0%	328	35.1%	4	100%	possibly_damaging(0.525)	tolerated(0.26)	neutral(0.211)	HMMPfam_Cu-oxidase,superfamily_Cupredoxins
CP	1356	genome.wustl.edu	37	3	148927151	148927151	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000096.3	-1	reviewed	p.E210*	1.000	257	0%	229	29.3%	5	20%	-	-	-	superfamily_Cupredoxins
TM4SF18	116441	genome.wustl.edu	37	3	149048185	149048185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138786.3	-1	validated	p.L67I	0.943	96	0%	99	25.3%	1	0%	probably_damaging(0.979)	tolerated(0.07)	deleterious(0.741)	HMMPfam_L6_membrane
WWTR1	25937	genome.wustl.edu	37	3	149260151	149260151	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015472.4	-1	validated	p.R248*	0.024	69	0%	69	44.9%	22	0%	-	-	-	NULL
WWTR1	25937	genome.wustl.edu	37	3	149260222	149260222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015472.4	-1	validated	p.A224V	0.889	55	0%	49	40.8%	16	0%	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	NULL
EIF2A	83939	genome.wustl.edu	37	3	150285787	150285787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032025.3	+1	validated	p.K216N	1.000	80	0%	56	23.2%	41	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like,HMMPfam_eIF2A
FAM194A	131831	genome.wustl.edu	37	3	150396316	150396316	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152394.3	-1	validated	p.S379	1.000	78	0%	68	29.4%	0	-	-	-	-	NULL
FAM194A	131831	genome.wustl.edu	37	3	150398265	150398265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152394.3	-1	validated	p.F367L	0.000	203	0%	187	27.3%	0	-	benign(0.031)	tolerated(0.45)	neutral(0.013)	NULL
MED12L	116931	genome.wustl.edu	37	3	150874066	150874066	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053002.4	+1	reviewed	p.Q225	0.992	144	0%	113	36.3%	0	-	-	-	-	NULL
MED12L	116931	genome.wustl.edu	37	3	150883218	150883218	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053002.4	+1	reviewed	p.R423	1.000	144	0%	98	26.5%	0	-	-	-	-	NULL
GPR171	29909	genome.wustl.edu	37	3	150916346	150916346	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013308.3	-1	validated	p.S276	0.000	148	0%	115	32.2%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GPR171	29909	genome.wustl.edu	37	3	150916564	150916564	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013308.3	-1	validated	p.R204*	0.550	151	0%	115	31.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
P2RY13	53829	genome.wustl.edu	37	3	151046282	151046282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176894.2	-1	reviewed	p.P188S	0.305	204	0%	233	28.8%	1	0%	benign(0.009)	tolerated(0.35)	neutral(0.021)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MED12L	116931	genome.wustl.edu	37	3	151105726	151105726	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053002.4	+1	reviewed	p.E1704	1.000	164	0%	152	32.9%	0	-	-	-	-	NULL
IGSF10	285313	genome.wustl.edu	37	3	151155401	151155401	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178822.4	-1	validated	p.R2316	0.989	255	0%	199	27.1%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IGSF10	285313	genome.wustl.edu	37	3	151156293	151156293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178822.4	-1	validated	p.R2019I	1.000	145	0.7%	124	39.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SUCNR1	56670	genome.wustl.edu	37	3	151598689	151598689	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033050.4	+1	reviewed	p.R120*	1.000	320	0%	292	33.9%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
MBNL1	4154	genome.wustl.edu	37	3	152018102	152018102	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000464596	+1	known	p.R39Q	1.000	242	0%	250	32%	7	14.2%	-	-	-	HMMPfam_zf-CCCH,HMMSmart_SM00356
TMEM14E	645843	genome.wustl.edu	37	3	152058497	152058497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001123228.1	-1	provisional	p.S66Y	0.004	139	0%	134	32.8%	0	-	benign(0.002)	tolerated(0.82)	neutral(0.001)	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153840466	153840466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015595.3	+1	validated	p.E229K	0.163	44	0%	36	36.1%	0	-	possibly_damaging(0.887)	tolerated(0.2)	neutral(0.396)	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153840862	153840862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015595.3	+1	validated	p.K361Q	1.000	68	0%	45	26.7%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153935742	153935742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015595.3	+1	validated	p.I644F	1.000	20	0%	16	25%	0	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	superfamily_PH domain-like
DHX36	170506	genome.wustl.edu	37	3	154007560	154007560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020865.2	-1	validated	p.D624N	1.000	164	0%	143	32.9%	18	11.1%	benign(0.206)	tolerated(0.47)	neutral(0.031)	superfamily_SSF52540
DHX36	170506	genome.wustl.edu	37	3	154033003	154033003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020865.2	-1	validated	p.K145N	0.999	202	0%	166	25.3%	2	0%	benign(0.014)	deleterious(0.02)	neutral(0.384)	NULL
GPR149	344758	genome.wustl.edu	37	3	154055907	154055907	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001038705.1	-1	provisional	p.R593*	1.000	168	0%	189	28%	0	-	-	-	-	NULL
SLC33A1	9197	genome.wustl.edu	37	3	155551716	155551716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004733.2	-1	reviewed	p.P360S	1.000	79	0%	94	24.5%	5	60%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	superfamily_MFS general substrate transporter
SLC33A1	9197	genome.wustl.edu	37	3	155560319	155560319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004733.2	-1	reviewed	p.E289*	1.000	79	0%	63	22.2%	3	0%	-	-	-	superfamily_MFS general substrate transporter
KCNAB1	7881	genome.wustl.edu	37	3	155861124	155861124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003471.3	+1	reviewed	p.E53K	0.585	164	0%	143	61.5%	0	-	benign(0.039)	deleterious(0.01)	neutral(0.408)	NULL
SSR3	6747	genome.wustl.edu	37	3	156261032	156261032	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007107.2	-1	reviewed	p.S173*	1.000	136	0%	91	30.8%	155	32.2%	-	-	-	HMMPfam_TRAP-gamma
PTX3	5806	genome.wustl.edu	37	3	157154737	157154737	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002852.3	+1	validated	p.A5	0.000	114	0%	102	31.4%	0	-	-	-	-	NULL
SHOX2	6474	genome.wustl.edu	37	3	157817736	157817736	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006884.3	-1	reviewed	p.G205	0.905	63	0%	51	23.5%	0	-	-	-	-	superfamily_Homeodomain-like
RSRC1	51319	genome.wustl.edu	37	3	157841711	157841711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016625.2	+1	provisional	p.R84Q	1.000	251	0%	142	29.6%	21	61.9%	unknown(0)	tolerated(0.15)	-	NULL
MLF1	4291	genome.wustl.edu	37	3	158320723	158320723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022443.3	+1	validated	p.K232N	0.740	87	0%	70	30%	0	-	benign(0.344)	tolerated(0.05)	neutral(0.454)	NULL
GFM1	85476	genome.wustl.edu	37	3	158371188	158371188	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024996.5	+1	reviewed	p.L310F	0.847	116	0%	97	32%	17	29.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GTP_EFTU,superfamily_Translat_factor,superfamily_SSF52540
IQCJ	654502	genome.wustl.edu	37	3	158980489	158980489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042706.1	+1	provisional	p.L103P	0.002	161	0%	126	30.2%	0	-	benign(0)	-	-	NULL
IFT80	57560	genome.wustl.edu	37	3	160099507	160099507	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020800.1	-1	validated	p.E15*	1.000	227	0%	207	25.1%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like
SMC4	10051	genome.wustl.edu	37	3	160143977	160143977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002800.1	+1	validated	p.A865V	0.005	349	0%	292	29.8%	24	45.8%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160151484	160151484	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002800.1	+1	validated	p.R1252*	1.000	57	0%	55	16.4%	16	18.7%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM59	286827	genome.wustl.edu	37	3	160156467	160156467	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173084.2	-1	validated	p.E169*	0.394	235	0.4%	220	33.6%	6	0%	-	-	-	NULL
TRIM59	286827	genome.wustl.edu	37	3	160156820	160156820	+	Missense_Mutation	SNP	C	C	T	rs139273294	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173084.2	-1	validated	p.R51Q	1.000	153	0%	138	29%	0	-	possibly_damaging(0.451)	tolerated(0.25)	neutral(0.184)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
KPNA4	3840	genome.wustl.edu	37	3	160233358	160233358	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002268.3	-1	reviewed	p.L305R	0.999	64	0%	52	28.8%	46	39.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
KPNA4	3840	genome.wustl.edu	37	3	160243875	160243875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002268.3	-1	reviewed	p.D193Y	1.000	207	0%	131	24.4%	29	55.1%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
NMD3	51068	genome.wustl.edu	37	3	160955951	160955951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015938.3	+1	provisional	p.E210K	1.000	275	0%	200	18.5%	28	25%	benign(0.273)	deleterious(0)	deleterious(0.474)	HMMPfam_NMD3
OTOL1	131149	genome.wustl.edu	37	3	161214761	161214761	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080440.1	+1	provisional	p.E56*	0.385	153	0%	130	36.2%	0	-	-	-	-	NULL
SI	6476	genome.wustl.edu	37	3	164700198	164700198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001041.3	-1	reviewed	p.T1750A	0.321	107	0%	92	26.1%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
SI	6476	genome.wustl.edu	37	3	164733851	164733851	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001041.3	-1	reviewed	p.D1259	0.999	274	0%	208	34.1%	0	-	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164735602	164735602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001041.3	-1	reviewed	p.F1194V	1.000	134	0%	109	27.5%	0	-	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	NULL
SI	6476	genome.wustl.edu	37	3	164741560	164741560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001041.3	-1	reviewed	p.S966Y	0.000	123	0%	113	21.2%	0	-	possibly_damaging(0.639)	deleterious(0.02)	deleterious(0.607)	HMMSmart_SM00018,superfamily_Trefoil
SI	6476	genome.wustl.edu	37	3	164764646	164764646	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001041.3	-1	reviewed	p.L624V	0.651	231	0%	155	28.4%	0	-	possibly_damaging(0.65)	deleterious(0.02)	deleterious(0.611)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164776788	164776788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001041.3	-1	reviewed	p.I454T	0.998	108	0%	99	36.4%	0	-	benign(0.066)	deleterious(0)	neutral(0.449)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164793793	164793793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001041.3	-1	reviewed	p.R3I	0.054	160	0%	140	31.4%	0	-	unknown(0)	deleterious(0.01)	-	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164907600	164907600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014926.2	-1	validated	p.R340Q	1.000	347	0%	378	30.7%	0	-	probably_damaging(0.987)	tolerated(0.41)	neutral(0.452)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164907910	164907910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014926.2	-1	validated	p.T237A	1.000	246	0%	237	20.7%	0	-	benign(0.267)	tolerated(0.13)	neutral(0.281)	HMMSmart_LRRCT,superfamily_SSF52058
BCHE	590	genome.wustl.edu	37	3	165547490	165547490	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000055.2	-1	reviewed	p.A444	0.008	240	0%	200	29%	0	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
BCHE	590	genome.wustl.edu	37	3	165547825	165547825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000055.2	-1	reviewed	p.I333V	0.043	138	0%	127	29.1%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_COesterase,superfamily_SSF53474
ZBBX	79740	genome.wustl.edu	37	3	167039929	167039929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024687.2	-1	validated	p.K320T	1.000	194	0%	141	28.4%	0	-	probably_damaging(0.955)	tolerated(0.61)	neutral(0.403)	NULL
SERPINI1	5274	genome.wustl.edu	37	3	167510405	167510405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122752.1	+1	reviewed	p.R170M	0.977	133	0%	101	32.7%	9	33.3%	benign(0.052)	deleterious(0.04)	neutral(0.352)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINI1	5274	genome.wustl.edu	37	3	167510533	167510533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122752.1	+1	reviewed	p.Q213K	1.000	215	0%	169	23.7%	7	42.8%	possibly_damaging(0.936)	tolerated(0.52)	neutral(0.390)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
MECOM	2122	genome.wustl.edu	37	3	168840424	168840424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000494292	-1	known	p.R308C	1.000	101	0%	86	25.6%	24	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SAMD7	344658	genome.wustl.edu	37	3	169644589	169644589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182610.2	+1	provisional	p.R180I	1.000	208	0%	180	26.1%	0	-	benign(0.303)	deleterious(0)	deleterious(0.538)	NULL
SEC62	7095	genome.wustl.edu	37	3	169700621	169700621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003262.3	+1	reviewed	p.K126N	1.000	138	0.7%	144	15.3%	21	42.8%	benign(0.099)	tolerated(0.22)	neutral(0.050)	HMMPfam_Sec62
SEC62	7095	genome.wustl.edu	37	3	169710706	169710706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003262.3	+1	reviewed	p.R352Q	0.996	122	0%	100	10%	42	9.5%	possibly_damaging(0.897)	tolerated(0.38)	neutral(0.371)	NULL
GPR160	26996	genome.wustl.edu	37	3	169801921	169801921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014373.2	+1	validated	p.F54C	0.817	188	0%	147	40.8%	4	25%	possibly_damaging(0.811)	deleterious(0)	deleterious(0.750)	NULL
PRKCI	5584	genome.wustl.edu	37	3	169998045	169998045	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002740.5	+1	reviewed	p.S246A	0.989	174	0%	148	27.7%	16	37.5%	benign(0.001)	tolerated(0.33)	neutral(0.024)	superfamily_Kinase_like
SKIL	6498	genome.wustl.edu	37	3	170078829	170078829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005414.3	+1	validated	p.R237Q	0.989	126	0%	127	28.3%	5	20%	possibly_damaging(0.549)	tolerated(0.29)	neutral(0.215)	NULL
SKIL	6498	genome.wustl.edu	37	3	170110205	170110205	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005414.3	+1	validated	p.*685Y	0.992	143	0%	97	37.1%	6	16.6%	-	-	-	NULL
SLC7A14	57709	genome.wustl.edu	37	3	170201210	170201210	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020949.2	-1	validated	p.F336	0.037	104	0%	109	31.2%	0	-	-	-	-	HMMPfam_AA_permease
RPL22L1	200916	genome.wustl.edu	37	3	170584219	170584219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099645.1	-1	validated	p.R107S	1.000	42	0%	31	22.6%	128	50%	benign(0.195)	deleterious(0.03)	neutral(0.383)	HMMPfam_Ribosomal_L22e
RPL22L1	200916	genome.wustl.edu	37	3	170584255	170584255	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099645.1	-1	validated	p.R95*	1.000	36	0%	25	36%	145	42%	-	-	-	HMMPfam_Ribosomal_L22e
EIF5A2	56648	genome.wustl.edu	37	3	170625586	170625586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020390.5	-1	validated	p.E4K	1.000	150	0%	136	35.3%	3	33.3%	benign(0.245)	tolerated(0.12)	neutral(0.286)	NULL
SLC2A2	6514	genome.wustl.edu	37	3	170715824	170715824	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000340.1	-1	reviewed	p.F481L	0.996	189	0%	149	33.6%	0	-	benign(0.201)	deleterious(0.01)	neutral(0.425)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
SLC2A2	6514	genome.wustl.edu	37	3	170715862	170715862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000340.1	-1	reviewed	p.F469V	1.000	186	0%	168	27.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
SLC2A2	6514	genome.wustl.edu	37	3	170723223	170723223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000340.1	-1	reviewed	p.D272Y	1.000	94	0%	104	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
TNIK	23043	genome.wustl.edu	37	3	170802052	170802052	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015028.2	-1	validated	p.S1021T	1.000	179	0%	131	27.5%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
TNIK	23043	genome.wustl.edu	37	3	170857267	170857267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015028.2	-1	validated	p.L471I	0.985	215	0%	184	28.3%	0	-	unknown(0)	tolerated(0.14)	-	NULL
TNIK	23043	genome.wustl.edu	37	3	170884948	170884948	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015028.2	-1	validated	p.E295	0.990	40	0%	49	30.6%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
TNIK	23043	genome.wustl.edu	37	3	170912377	170912377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015028.2	-1	validated	p.K118N	1.000	340	0%	305	31.8%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLD1	5337	genome.wustl.edu	37	3	171321010	171321010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002662.3	-1	validated	p.E1028G	0.966	143	0%	96	33.3%	1	0%	benign(0.051)	tolerated(0.29)	neutral(0.032)	NULL
PLD1	5337	genome.wustl.edu	37	3	171395477	171395477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000342215	-1	known	p.G516D	0.999	264	0%	240	30.8%	1	0%	benign(0.002)	tolerated(0.54)	neutral(0.007)	NULL
NCEH1	57552	genome.wustl.edu	37	3	172365852	172365852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020792.4	-1	validated	p.F96C	0.997	93	0%	82	31.7%	7	57.1%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
ECT2	1894	genome.wustl.edu	37	3	172477994	172477994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018098.4	+1	reviewed	p.D178Y	1.000	151	0%	99	30.3%	9	22.2%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
NLGN1	22871	genome.wustl.edu	37	3	173998365	173998365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014932.2	+1	reviewed	p.D582Y	1.000	229	0%	237	28.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_COesterase,superfamily_SSF53474
TBL1XR1	79718	genome.wustl.edu	37	3	176744219	176744219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024665.4	-1	reviewed	p.F487S	1.000	94	0%	75	28%	26	57.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_WD40,superfamily_WD40_like
TBL1XR1	79718	genome.wustl.edu	37	3	176756101	176756101	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024665.4	-1	reviewed	p.T349	1.000	34	0%	38	36.8%	18	55.5%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
KCNMB2	10242	genome.wustl.edu	37	3	178543377	178543377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005832.3	+1	reviewed	p.N20H	1.000	169	0%	257	28.4%	0	-	possibly_damaging(0.813)	deleterious(0.03)	deleterious(0.671)	HMMPfam_KcnmB2_inactiv
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	rs121913287		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006218.2	+1	reviewed	p.R88Q	1.000	251	0%	202	30.2%	2	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178952007	178952007	+	Missense_Mutation	SNP	A	A	G	rs121913288		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006218.2	+1	reviewed	p.Y1021C	1.000	175	0%	170	27.6%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PI3Kc,superfamily_Kinase_like
ZNF639	51193	genome.wustl.edu	37	3	179051509	179051509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016331.1	+1	provisional	p.K253E	1.000	110	0%	107	36.4%	33	39.3%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
ZNF639	51193	genome.wustl.edu	37	3	179051767	179051767	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016331.1	+1	provisional	p.E339*	1.000	97	0%	113	31.9%	25	48%	-	-	-	HMMSmart_ZnF_C2H2
ZNF639	51193	genome.wustl.edu	37	3	179051896	179051896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016331.1	+1	provisional	p.R382W	1.000	171	0%	158	24.7%	28	28.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MRPL47	57129	genome.wustl.edu	37	3	179306713	179306713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020409.2	-1	reviewed	p.L234I	0.162	189	0%	133	27.1%	70	40%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	NULL
USP13	8975	genome.wustl.edu	37	3	179426598	179426598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003940.2	+1	validated	p.L220F	1.000	153	0%	167	28.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-UBP,HMMSmart_ZnF_UBP
USP13	8975	genome.wustl.edu	37	3	179426715	179426715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003940.2	+1	validated	p.K259E	1.000	80	0%	79	25.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-UBP,HMMSmart_ZnF_UBP
USP13	8975	genome.wustl.edu	37	3	179462841	179462841	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003940.2	+1	validated	p.I515	0.738	134	0%	125	30.4%	4	50%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
PEX5L	51555	genome.wustl.edu	37	3	179605499	179605499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016559.1	-1	provisional	p.S91L	1.000	393	0%	370	37%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
TTC14	151613	genome.wustl.edu	37	3	180321042	180321042	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133462.3	+1	validated	p.F139	1.000	101	0%	92	28.3%	3	100%	-	-	-	superfamily_Nucleic acid-binding proteins
FXR1	8087	genome.wustl.edu	37	3	180688137	180688137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005087.2	+1	reviewed	p.N532H	1.000	108	0%	89	31.5%	162	48.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOX2	6657	genome.wustl.edu	37	3	181430259	181430259	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003106.2	+1	reviewed	p.S37	1.000	24	0%	20	45%	6	83.3%	-	-	-	superfamily_HMG-box
SOX2	6657	genome.wustl.edu	37	3	181430600	181430600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003106.2	+1	reviewed	p.A151V	1.000	14	0%	21	23.8%	11	45.4%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
ATP11B	23200	genome.wustl.edu	37	3	182553853	182553853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014616.1	+1	validated	p.D116Y	1.000	138	0%	105	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase
ATP11B	23200	genome.wustl.edu	37	3	182563301	182563301	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014616.1	+1	validated	p.E254*	1.000	66	0%	67	28.4%	0	-	-	-	-	superfamily_SSF81653
ATP11B	23200	genome.wustl.edu	37	3	182566270	182566270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014616.1	+1	validated	p.A259V	1.000	80	0%	69	20.3%	0	-	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	superfamily_SSF81653
ATP11B	23200	genome.wustl.edu	37	3	182575703	182575703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014616.1	+1	validated	p.L297I	1.000	259	0%	169	30.8%	0	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	NULL
LAMP3	27074	genome.wustl.edu	37	3	182841876	182841876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014398.3	-1	validated	p.R415I	1.000	224	0%	234	15.8%	4	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Lamp
MCF2L2	23101	genome.wustl.edu	37	3	182925575	182925575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015078.2	-1	validated	p.G845C	0.996	197	0%	221	29.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
B3GNT5	84002	genome.wustl.edu	37	3	182988629	182988629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032047.4	+1	reviewed	p.F348Y	0.453	133	0%	107	15%	1	0%	possibly_damaging(0.446)	deleterious(0.02)	deleterious(0.529)	NULL
MCF2L2	23101	genome.wustl.edu	37	3	183056658	183056658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015078.2	-1	validated	p.R139H	0.995	188	1.1%	143	37.1%	0	-	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	HMMSmart_SM00516
KLHL6	89857	genome.wustl.edu	37	3	183273245	183273245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130446.2	-1	validated	p.R66Q	0.668	263	0%	269	27.5%	0	-	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	superfamily_BTB/POZ_fold,HMMPfam_BTB
KLHL24	54800	genome.wustl.edu	37	3	183368322	183368322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017644.3	+1	validated	p.R60C	1.000	268	0%	264	31.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_POZ domain,HMMPfam_BTB
KLHL24	54800	genome.wustl.edu	37	3	183368546	183368546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017644.3	+1	validated	p.E134D	1.000	317	0%	296	29.7%	3	33.3%	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
KLHL24	54800	genome.wustl.edu	37	3	183396958	183396958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017644.3	+1	validated	p.L563I	1.000	148	0%	170	41.2%	13	30.7%	benign(0.052)	tolerated(0.38)	neutral(0.021)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
YEATS2	55689	genome.wustl.edu	37	3	183491565	183491565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018023.4	+1	validated	p.R784Q	1.000	164	0%	135	23.7%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
YEATS2	55689	genome.wustl.edu	37	3	183521963	183521963	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018023.4	+1	validated	p.I1257	0.801	129	0%	177	34.5%	5	40%	-	-	-	NULL
ABCC5	10057	genome.wustl.edu	37	3	183655744	183655744	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005688.2	-1	reviewed	p.R1267*	1.000	141	0%	119	42%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC5	10057	genome.wustl.edu	37	3	183683248	183683248	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005688.2	-1	reviewed	p.F625	1.000	193	0%	158	34.2%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
HTR3E	285242	genome.wustl.edu	37	3	183823624	183823624	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182589.2	+1	reviewed	p.I279	0.029	230	0%	258	32.2%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
EIF2B5	8893	genome.wustl.edu	37	3	183855448	183855448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003907.2	+1	reviewed	p.R121*	1.000	93	0%	102	26.5%	14	0%	-	-	-	superfamily_SSF53448
AP2M1	1173	genome.wustl.edu	37	3	183897958	183897958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004068.3	+1	reviewed	p.E114D	1.000	35	0%	31	32.3%	308	38.9%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SNARE-like
ABCF3	55324	genome.wustl.edu	37	3	183906551	183906551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018358.2	+1	validated	p.A280V	0.432	66	0%	69	20.3%	26	42.3%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ECE2	9718	genome.wustl.edu	37	3	184009972	184009972	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014693.3	+1	validated	p.F866	1.000	58	0%	57	21.1%	0	-	-	-	-	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
THPO	7066	genome.wustl.edu	37	3	184090715	184090715	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000452754	-1	known	p.W211G	1.000	90	0%	113	31.9%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
EPHB3	2049	genome.wustl.edu	37	3	184295487	184295487	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004443.3	+1	reviewed	p.S507	0.003	38	0%	42	26.2%	5	0%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
VPS8	23355	genome.wustl.edu	37	3	184542523	184542523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009921.2	+1	validated	p.K35Q	1.000	124	0%	103	25.2%	2	50%	benign(0.139)	deleterious(0)	neutral(0.457)	NULL
C3orf70	285382	genome.wustl.edu	37	3	184801062	184801062	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025266.1	-1	predicted	p.V162	1.000	159	0%	125	35.2%	0	-	-	-	-	NULL
EHHADH	1962	genome.wustl.edu	37	3	184935947	184935947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001966.3	-1	reviewed	p.I182T	0.994	359	0%	167	25.7%	0	-	possibly_damaging(0.854)	deleterious(0.05)	deleterious(0.674)	superfamily_SSF52096
MAP3K13	9175	genome.wustl.edu	37	3	185181353	185181353	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004721.3	+1	reviewed	p.E432*	1.000	203	0%	184	23.4%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
LIPH	200879	genome.wustl.edu	37	3	185237031	185237031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139248.2	-1	reviewed	p.S262N	0.031	159	0%	190	22.1%	6	66.6%	benign(0.001)	tolerated(0.99)	-	HMMPfam_Lipase,superfamily_SSF53474
LIPH	200879	genome.wustl.edu	37	3	185251431	185251431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139248.2	-1	reviewed	p.G152R	1.000	304	0.3%	284	29.6%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Lipase,superfamily_SSF53474
LIPH	200879	genome.wustl.edu	37	3	185252576	185252576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139248.2	-1	reviewed	p.K132E	1.000	286	0%	294	27.6%	3	33.3%	possibly_damaging(0.872)	tolerated(0.19)	neutral(0.389)	HMMPfam_Lipase,superfamily_SSF53474
DGKG	1608	genome.wustl.edu	37	3	185993435	185993435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001346.2	-1	reviewed	p.R271W	1.000	52	0%	71	33.8%	0	-	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	HMMSmart_SM00109,superfamily_Cysteine-rich domain
TBCCD1	55171	genome.wustl.edu	37	3	186272842	186272842	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134415.1	-1	validated	p.A297	0.829	201	0%	187	12.3%	6	16.6%	-	-	-	NULL
DNAJB11	51726	genome.wustl.edu	37	3	186289891	186289891	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016306.4	+1	validated	p.F26V	1.000	176	0%	180	25%	45	42.2%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
FETUB	26998	genome.wustl.edu	37	3	186370280	186370280	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014375.2	+1	reviewed	p.E337*	0.171	452	0%	318	40.6%	0	-	-	-	-	NULL
HRG	3273	genome.wustl.edu	37	3	186394974	186394974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000412.2	+1	reviewed	p.E294K	0.000	535	0.2%	515	29.3%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
KNG1	3827	genome.wustl.edu	37	3	186450357	186450357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102416.2	+1	reviewed	p.S275N	1.000	154	0%	210	31.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
KNG1	3827	genome.wustl.edu	37	3	186459803	186459803	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102416.2	+1	reviewed	p.E540*	0.428	236	0%	294	28.9%	0	-	-	-	-	NULL
RPL39L	116832	genome.wustl.edu	37	3	186839028	186839028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052969.1	-1	reviewed	p.R21C	0.026	188	0%	190	31.6%	6	0%	benign(0.042)	tolerated(0.05)	neutral(0.348)	HMMPfam_Ribosomal_L39,superfamily_Ribosomal_L39
MASP1	5648	genome.wustl.edu	37	3	187003617	187003617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139125.3	-1	reviewed	p.V78A	1.000	199	0%	218	35.3%	0	-	possibly_damaging(0.639)	tolerated(0.12)	deleterious(0.484)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
BCL6	604	genome.wustl.edu	37	3	187447264	187447264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130845.1	-1	reviewed	p.D310G	1.000	137	0%	150	38%	5	0%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
TP63	8626	genome.wustl.edu	37	3	189455532	189455532	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003722.4	+1	reviewed	p.F22	0.906	210	0%	193	36.3%	0	-	-	-	-	NULL
FGF12	2257	genome.wustl.edu	37	3	191888348	191888348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021032.3	-1	reviewed	p.R171Q	1.000	536	0%	514	25.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine
MB21D2	151963	genome.wustl.edu	37	3	192516412	192516412	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178496.3	-1	validated	p.T413	0.008	102	0%	106	23.6%	1	0%	-	-	-	NULL
ATP13A5	344905	genome.wustl.edu	37	3	192992990	192992990	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198505.2	-1	provisional	p.E1166D	0.987	245	0%	220	37.7%	0	-	benign(0.01)	tolerated(0.62)	neutral(0.005)	NULL
ATP13A5	344905	genome.wustl.edu	37	3	193052828	193052828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198505.2	-1	provisional	p.K335T	0.982	255	0%	273	34.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
CPN2	1370	genome.wustl.edu	37	3	194062939	194062939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080513.2	-1	validated	p.F165V	0.996	29	0%	39	35.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like
GP5	2814	genome.wustl.edu	37	3	194118247	194118247	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004488.2	-1	validated	p.A255	0.000	128	0%	88	27.3%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
ACAP2	23527	genome.wustl.edu	37	3	195017952	195017952	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012287.5	-1	validated	p.K485T	1.000	242	0%	198	32.8%	7	42.8%	probably_damaging(0.999)	tolerated(0.37)	deleterious(0.509)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
LOC651714	651714	genome.wustl.edu	37	3	195345849	195345849	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078298.1	+1	model	NULL	0.717	460	0%	389	8.7%	2	0%	benign(0.038)	deleterious(0)	neutral(0.447)	-
MUC4	4585	genome.wustl.edu	37	3	195517978	195517978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018406.5	-1	reviewed	p.G158V	0.000	222	0%	278	36%	0	-	probably_damaging(0.999)	tolerated(0.44)	deleterious(0.503)	NULL
TFRC	7037	genome.wustl.edu	37	3	195778940	195778940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128148.1	-1	validated	p.R719H	0.010	102	0%	98	14.3%	182	13.7%	probably_damaging(0.996)	tolerated(0.59)	neutral(0.466)	HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain
PCYT1A	5130	genome.wustl.edu	37	3	195966531	195966531	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005017.2	-1	provisional	p.E262*	1.000	200	0%	159	35.2%	15	6.6%	-	-	-	NULL
C3orf43	255798	genome.wustl.edu	37	3	196235137	196235137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077657.1	-1	validated	p.T89N	0.998	256	0%	222	31.5%	0	-	possibly_damaging(0.647)	tolerated(0.43)	neutral(0.241)	NULL
C3orf43	255798	genome.wustl.edu	37	3	196235177	196235177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077657.1	-1	validated	p.L76V	0.022	199	0%	194	34.5%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
LRRC33	375387	genome.wustl.edu	37	3	196386659	196386659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198565.1	+1	provisional	p.A49T	0.001	27	0%	24	33.3%	6	50%	benign(0)	tolerated(0.61)	neutral(0.004)	superfamily_SSF52058
LRRC33	375387	genome.wustl.edu	37	3	196387045	196387045	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198565.1	+1	provisional	p.F177	0.940	27	0%	23	21.7%	0	-	-	-	-	superfamily_SSF52058
LRRC33	375387	genome.wustl.edu	37	3	196387780	196387780	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198565.1	+1	provisional	p.F422	0.007	88	0%	71	43.7%	4	0%	-	-	-	HMMSmart_LRR_TYP,superfamily_SSF52058
PIGX	54965	genome.wustl.edu	37	3	196454800	196454800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017861.3	+1	reviewed	p.M68L	0.981	276	0%	235	26%	11	27.2%	benign(0.002)	tolerated(1)	-	HMMPfam_PIG-X,HMMSmart_PIG-X
NCBP2	22916	genome.wustl.edu	37	3	196664404	196664404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007362.3	-1	reviewed	p.G126S	1.000	96	0%	80	27.5%	54	42.5%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_RNA-binding domain RBD
IQCG	84223	genome.wustl.edu	37	3	197659062	197659062	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134435.1	-1	validated	p.F209	0.999	238	0.4%	233	32.2%	12	41.6%	-	-	-	NULL
IQCG	84223	genome.wustl.edu	37	3	197665621	197665621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134435.1	-1	validated	p.N105H	0.001	395	0%	269	33.1%	9	55.5%	possibly_damaging(0.512)	tolerated(0.09)	neutral(0.468)	NULL
ZNF732	654254	genome.wustl.edu	37	4	265248	265248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001137608.1	-1	provisional	p.K466N	0.691	94	0%	87	33.3%	0	-	benign(0.325)	tolerated(0.11)	neutral(0.373)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF732	654254	genome.wustl.edu	37	4	265837	265837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001137608.1	-1	provisional	p.R270I	0.953	81	0%	105	22.9%	0	-	benign(0.053)	tolerated(0.28)	neutral(0.035)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF48695
ZNF732	654254	genome.wustl.edu	37	4	266396	266396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001137608.1	-1	provisional	p.D84Y	0.108	78	0%	94	28.7%	0	-	possibly_damaging(0.769)	deleterious(0)	deleterious(0.730)	NULL
ZNF141	7700	genome.wustl.edu	37	4	367218	367218	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003441.2	+1	validated	p.E331*	0.834	395	0%	408	28.7%	1	0%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
ZNF721	170960	genome.wustl.edu	37	4	436024	436024	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133474.2	-1	validated	p.K744	0.028	103	0%	107	29.9%	3	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	437282	437282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133474.2	-1	validated	p.R325I	0.342	271	0%	267	30.3%	3	0%	benign(0.032)	tolerated(0.14)	neutral(0.251)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	437664	437664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133474.2	-1	validated	p.R198C	0.002	180	0.6%	176	30.7%	1	100%	probably_damaging(0.982)	tolerated(1)	neutral(0.426)	NULL
PDE6B	5158	genome.wustl.edu	37	4	654306	654306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000283.3	+1	reviewed	p.F506L	1.000	14	0%	16	56.2%	0	-	benign(0.157)	deleterious(0)	neutral(0.459)	superfamily_HD-domain/PDEase-like
PDE6B	5158	genome.wustl.edu	37	4	663869	663869	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000283.3	+1	reviewed	p.P846	0.992	59	0%	45	22.2%	2	0%	-	-	-	NULL
IDUA	3425	genome.wustl.edu	37	4	995272	995272	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000504568	+1	known	p.R157H	0.000	20	0%	15	53.3%	16	25%	-	-	-	HMMPfam_Glyco_hydro_39,superfamily_(Trans)glycosidases
RNF212	285498	genome.wustl.edu	37	4	1073468	1073468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001131034.1	-1	validated	p.S158L	0.856	50	0%	53	22.6%	0	-	possibly_damaging(0.749)	deleterious(0.01)	deleterious(0.681)	NULL
RNF212	285498	genome.wustl.edu	37	4	1075399	1075399	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001131034.1	-1	validated	p.S124*	0.006	15	0%	32	21.9%	1	0%	-	-	-	NULL
KIAA1530	57654	genome.wustl.edu	37	4	1348977	1348977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020894.2	+1	validated	p.V374I	0.002	11	0%	16	50%	0	-	benign(0.111)	tolerated(0.07)	neutral(0.328)	NULL
KIAA1530	57654	genome.wustl.edu	37	4	1360186	1360186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020894.2	+1	validated	p.P419T	1.000	49	0%	32	43.8%	1	0%	possibly_damaging(0.918)	tolerated(0.15)	deleterious(0.609)	NULL
LETM1	3954	genome.wustl.edu	37	4	1824024	1824024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012318.2	-1	reviewed	p.E498K	0.070	34	0%	22	54.5%	25	36%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
WHSC1	7468	genome.wustl.edu	37	4	1952839	1952839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042424.2	+1	reviewed	p.Y641C	0.292	86	0%	49	24.5%	9	77.7%	possibly_damaging(0.77)	tolerated(0.18)	neutral(0.342)	NULL
WHSC2	7469	genome.wustl.edu	37	4	1985408	1985408	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005663.3	-1	reviewed	p.F450	0.906	27	0%	21	28.6%	44	52.2%	-	-	-	NULL
FAM193A	8603	genome.wustl.edu	37	4	2692508	2692508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003704.3	+1	validated	p.S581P	0.000	100	0%	72	25%	13	69.2%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
GRK4	2868	genome.wustl.edu	37	4	2993973	2993973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182982.2	+1	reviewed	p.R98Q	0.001	50	0%	66	28.8%	0	-	benign(0.14)	tolerated(0.13)	neutral(0.265)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
GRK4	2868	genome.wustl.edu	37	4	3021551	3021551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182982.2	+1	reviewed	p.V309I	1.000	98	0%	114	36%	0	-	possibly_damaging(0.667)	tolerated(0.16)	neutral(0.295)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HTT	3064	genome.wustl.edu	37	4	3105587	3105587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002111.6	+1	reviewed	p.E169K	1.000	413	0%	341	29.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
HTT	3064	genome.wustl.edu	37	4	3156069	3156069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002111.6	+1	reviewed	p.R1183Q	0.934	40	0%	29	27.6%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HTT	3064	genome.wustl.edu	37	4	3241786	3241786	+	Nonstop_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002111.6	+1	reviewed	p.*3143C	0.995	7	0.000	6	0.667	34	38.2%	-	-	-	NULL
RGS12	6002	genome.wustl.edu	37	4	3418677	3418677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198229.2	+1	reviewed	p.F822C	1.000	31	0%	29	24.1%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
STK32B	55351	genome.wustl.edu	37	4	5399935	5399935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018401.1	+1	provisional	p.D146Y	1.000	173	0%	147	24.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EVC2	132884	genome.wustl.edu	37	4	5564623	5564623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147127.4	-1	reviewed	p.K1293N	1.000	412	0%	310	30%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EVC2	132884	genome.wustl.edu	37	4	5576460	5576460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147127.4	-1	reviewed	p.D1104E	0.221	151	0%	123	24.4%	0	-	probably_damaging(0.995)	tolerated(0.12)	deleterious(0.718)	NULL
EVC2	132884	genome.wustl.edu	37	4	5690918	5690918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147127.4	-1	reviewed	p.E224D	0.034	141	0%	122	29.5%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
EVC2	132884	genome.wustl.edu	37	4	5696081	5696081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147127.4	-1	reviewed	p.S144Y	0.969	161	0%	121	14%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
CRMP1	1400	genome.wustl.edu	37	4	5830236	5830236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014809.1	-1	reviewed	p.R595C	1.000	31	0%	33	30.3%	4	0%	probably_damaging(0.987)	deleterious(0.05)	deleterious(0.782)	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6031469	6031469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099433.1	-1	validated	p.R807W	0.345	35	0%	22	22.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MRFAP1	93621	genome.wustl.edu	37	4	6642660	6642660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033296.1	+1	provisional	p.F24S	0.994	84	0%	92	32.6%	299	34.4%	benign(0.17)	deleterious(0)	neutral(0.460)	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6865199	6865199	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100590.1	+1	validated	p.V1030	0.788	183	0%	210	28.6%	1	100%	-	-	-	NULL
PSAPL1	768239	genome.wustl.edu	37	4	7435284	7435284	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085382.1	-1	validated	p.F441	0.329	20	0%	22	27.3%	0	-	-	-	-	HMMPfam_SapB_2,HMMSmart_SapB,superfamily_Saposin_like
SORCS2	57537	genome.wustl.edu	37	4	7714542	7714542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020777.2	+1	reviewed	p.E651K	0.856	47	0%	51	31.4%	0	-	benign(0.344)	tolerated(0.21)	neutral(0.152)	HMMSmart_SM00602
SH3TC1	54436	genome.wustl.edu	37	4	8242556	8242556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018986.3	+1	validated	p.E1295D	1.000	59	0%	34	14.7%	11	45.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_TPR-like
METTL19	152992	genome.wustl.edu	37	4	8467124	8467124	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152544.1	+1	provisional	p.F52V	0.998	107	0%	77	27.3%	4	100%	benign(0.056)	deleterious(0.01)	neutral(0.409)	HMMPfam_AdoMet_MTase
ENSG00000219492	0	genome.wustl.edu	37	4	9387377	9387377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000402465	-1	known	p.F111V	0.847	131	0%	124	25%	0	-	-	-	-	NULL
LOC100133128	100133128	genome.wustl.edu	37	4	9400966	9400966	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001720802.1	+1	model	p.F13V	0.662	139	0%	145	31%	0	-	-	-	-	NULL
DRD5	1816	genome.wustl.edu	37	4	9783920	9783920	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000798.4	+1	reviewed	p.F89	0.992	60	0%	67	29.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DRD5	1816	genome.wustl.edu	37	4	9784342	9784342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000798.4	+1	reviewed	p.S230L	1.000	85	0%	100	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DRD5	1816	genome.wustl.edu	37	4	9784685	9784685	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000798.4	+1	reviewed	p.F344	0.998	126	0%	135	32.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF518B	85460	genome.wustl.edu	37	4	10446011	10446011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053042.2	-1	validated	p.E648K	0.464	191	0%	232	33.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10447853	10447853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053042.2	-1	validated	p.R34W	0.027	207	0%	206	26.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
HS3ST1	9957	genome.wustl.edu	37	4	11400898	11400898	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005114.2	-1	reviewed	p.S244	0.156	18	0%	24	25%	16	18.7%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
CC2D2A	57545	genome.wustl.edu	37	4	15511840	15511840	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080522.2	+1	reviewed	p.R173*	0.828	220	0%	205	29.3%	1	0%	-	-	-	NULL
CC2D2A	57545	genome.wustl.edu	37	4	15565027	15565027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080522.2	+1	reviewed	p.R1022W	1.000	38	0%	26	26.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CD38	952	genome.wustl.edu	37	4	15818230	15818230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001775.2	+1	validated	p.M110I	0.000	315	0%	264	29.9%	2	0%	benign(0.002)	tolerated(0.82)	neutral(0.001)	HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like
CD38	952	genome.wustl.edu	37	4	15826525	15826525	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001775.2	+1	validated	p.K129Q	0.000	317	0%	296	27.4%	4	0%	benign(0.118)	tolerated(0.23)	neutral(0.051)	HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like
PROM1	8842	genome.wustl.edu	37	4	16010678	16010678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006017.2	-1	reviewed	p.R399C	0.000	94	0%	70	34.3%	2	0%	benign(0.026)	tolerated(0.06)	neutral(0.324)	HMMPfam_Prominin
LDB2	9079	genome.wustl.edu	37	4	16513690	16513690	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000507464	-1	known	p.R140*	1.000	201	0.5%	181	24.3%	8	0%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_LIM_bind
NCAPG	64151	genome.wustl.edu	37	4	17844978	17844978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022346.3	+1	validated	p.R993Q	1.000	302	0%	240	23.3%	20	15%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
SLIT2	9353	genome.wustl.edu	37	4	20570571	20570571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004787.1	+1	provisional	p.S1011Y	1.000	141	0%	106	24.5%	4	75%	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	HMMSmart_SM00179,HMMSmart_SM00274,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
SLIT2	9353	genome.wustl.edu	37	4	20620432	20620432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004787.1	+1	provisional	p.K1464Q	1.000	85	0%	66	34.8%	8	37.5%	benign(0.067)	tolerated(0.3)	neutral(0.033)	HMMSmart_SM00041
KCNIP4	80333	genome.wustl.edu	37	4	20731737	20731737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147183.3	-1	reviewed	p.R220C	1.000	141	0%	97	26.8%	1	100%	benign(0.016)	deleterious(0.02)	neutral(0.384)	superfamily_EF-hand
KCNIP4	80333	genome.wustl.edu	37	4	20760497	20760497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147183.3	-1	reviewed	p.V81A	1.000	164	0.6%	149	30.9%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	superfamily_EF-hand
GPR125	166647	genome.wustl.edu	37	4	22389806	22389806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145290.2	-1	validated	p.R1163Q	1.000	213	0%	144	25.7%	10	0%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
GPR125	166647	genome.wustl.edu	37	4	22390012	22390012	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145290.2	-1	validated	p.A1094	0.679	160	0%	168	24.4%	11	18.1%	-	-	-	NULL
GPR125	166647	genome.wustl.edu	37	4	22390389	22390389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145290.2	-1	validated	p.E969K	0.862	311	0%	305	26.2%	8	0%	benign(0.018)	tolerated(0.84)	neutral(0.001)	HMMPfam_7tm_2
GPR125	166647	genome.wustl.edu	37	4	22415374	22415374	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145290.2	-1	validated	p.E625*	1.000	89	0%	109	27.5%	2	0%	-	-	-	NULL
GBA3	57733	genome.wustl.edu	37	4	22749162	22749162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020973.3	+1	validated	p.G177D	1.000	205	0%	187	30.5%	0	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
LGI2	55203	genome.wustl.edu	37	4	25005634	25005634	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018176.3	-1	validated	p.K359N	0.991	304	0%	312	29.2%	0	-	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_EPTP
LGI2	55203	genome.wustl.edu	37	4	25028499	25028499	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018176.3	-1	validated	p.L111R	0.992	96	0%	84	34.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SEL1L3	23231	genome.wustl.edu	37	4	25769163	25769163	+	Silent	SNP	G	G	A	rs182680181	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015187.3	-1	validated	p.I943	1.000	44	0%	43	16.3%	66	7.5%	-	-	-	superfamily_HCP-like
TBC1D19	55296	genome.wustl.edu	37	4	26750037	26750037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018317.2	+1	validated	p.R442C	1.000	239	0.4%	197	28.4%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ARAP2	116984	genome.wustl.edu	37	4	36069541	36069541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015230.2	-1	reviewed	p.Q1701H	0.002	229	0%	216	29.6%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36150117	36150117	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015230.2	-1	reviewed	p.I970	1.000	64	0%	53	30.2%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36152535	36152535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015230.2	-1	reviewed	p.Y962H	1.000	124	0.8%	113	30.1%	0	-	possibly_damaging(0.649)	tolerated(0.46)	neutral(0.240)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36166725	36166725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015230.2	-1	reviewed	p.E662K	1.000	169	0%	143	25.9%	0	-	possibly_damaging(0.858)	deleterious(0.02)	deleterious(0.714)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36212090	36212090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015230.2	-1	reviewed	p.I470T	0.994	171	0%	173	26%	0	-	unknown(0)	-	-	superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36230358	36230358	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015230.2	-1	reviewed	p.E251*	1.000	284	0%	247	32.4%	0	-	-	-	-	NULL
ARAP2	116984	genome.wustl.edu	37	4	36230456	36230456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015230.2	-1	reviewed	p.S218F	0.042	345	0%	293	29.7%	1	0%	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
C4orf19	55286	genome.wustl.edu	37	4	37592561	37592561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001104629.1	+1	validated	p.A295V	0.998	92	0%	98	32.7%	0	-	unknown(0)	deleterious(0)	-	NULL
TLR10	81793	genome.wustl.edu	37	4	38775615	38775615	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017388.1	-1	reviewed	p.F533V	0.999	323	0%	262	31.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_LRRCT,superfamily_SSF52058
TLR1	7096	genome.wustl.edu	37	4	38798531	38798531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003263.3	-1	reviewed	p.I641T	1.000	306	0%	293	29.4%	1	0%	possibly_damaging(0.438)	deleterious(0)	deleterious(0.588)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
TLR1	7096	genome.wustl.edu	37	4	38799459	38799459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003263.3	-1	reviewed	p.T332A	0.989	135	0%	129	25.6%	1	0%	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	superfamily_L domain-like,superfamily_Outer arm dynein light chain 1
TLR6	10333	genome.wustl.edu	37	4	38828952	38828952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006068.3	-1	validated	p.E715K	1.000	251	0%	234	33.8%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
KLHL5	51088	genome.wustl.edu	37	4	39064252	39064252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015990.4	+1	validated	p.D40N	1.000	236	0%	239	29.7%	0	-	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
KLHL5	51088	genome.wustl.edu	37	4	39082796	39082796	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015990.4	+1	validated	p.E260*	1.000	139	0%	113	36.3%	7	28.5%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
KLHL5	51088	genome.wustl.edu	37	4	39114672	39114672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015990.4	+1	validated	p.S620Y	1.000	77	0%	49	32.7%	8	0%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
WDR19	57728	genome.wustl.edu	37	4	39245931	39245931	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025132.3	+1	reviewed	p.R829*	0.993	224	0%	151	27.2%	1	0%	-	-	-	superfamily_TPR-like
KLB	152831	genome.wustl.edu	37	4	39409220	39409220	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175737.3	+1	validated	p.I217	0.989	241	0%	220	26.4%	0	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
RPL9	6133	genome.wustl.edu	37	4	39456527	39456527	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000661.4	-1	reviewed	p.E143D	0.998	74	0%	71	26.8%	802	39.4%	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	HMMPfam_Ribosomal_L6,superfamily_Ribosomal protein L6
RPL9	6133	genome.wustl.edu	37	4	39459252	39459252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000661.4	-1	reviewed	p.R71Q	1.000	70	0%	69	27.5%	711	36.2%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Ribosomal_L6,superfamily_Ribosomal protein L6
N4BP2	55728	genome.wustl.edu	37	4	40103771	40103771	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018177.3	+1	reviewed	p.F102	0.000	199	0%	154	29.9%	0	-	-	-	-	NULL
RBM47	54502	genome.wustl.edu	37	4	40440317	40440317	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098634.1	-1	validated	p.F198	0.974	63	0%	46	39.1%	26	30.7%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NSUN7	79730	genome.wustl.edu	37	4	40776320	40776320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024677.4	+1	validated	p.R176Q	1.000	137	0%	119	28.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
NSUN7	79730	genome.wustl.edu	37	4	40800884	40800884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024677.4	+1	validated	p.E455K	1.000	92	0%	69	17.4%	0	-	benign(0.252)	tolerated(0.48)	neutral(0.036)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LIMCH1	22998	genome.wustl.edu	37	4	41601005	41601005	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014988.2	+1	validated	p.P102	0.227	136	0%	111	30.6%	1	0%	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
LIMCH1	22998	genome.wustl.edu	37	4	41648621	41648621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014988.2	+1	validated	p.R459H	1.000	570	0.2%	531	11.9%	4	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DCAF4L1	285429	genome.wustl.edu	37	4	41983924	41983924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029955.3	+1	validated	p.V39I	0.483	113	0%	122	13.1%	0	-	benign(0.085)	tolerated(0.52)	neutral(0.015)	superfamily_WD40 repeat-like
BEND4	389206	genome.wustl.edu	37	4	42122192	42122192	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207406.3	-1	validated	p.V422	0.997	67	0%	64	28.1%	0	-	-	-	-	HMMPfam_BEN
ATP8A1	10396	genome.wustl.edu	37	4	42627685	42627685	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006095.2	-1	reviewed	p.Y70	1.000	150	0%	127	28.3%	0	-	-	-	-	NULL
KCTD8	386617	genome.wustl.edu	37	4	44177208	44177208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198353.2	-1	validated	p.V341F	0.973	222	0%	146	36.3%	0	-	probably_damaging(0.975)	tolerated(0.05)	deleterious(0.762)	NULL
GABRA2	2555	genome.wustl.edu	37	4	46264055	46264055	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000807.2	-1	reviewed	p.F316C	1.000	245	0%	191	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA2	2555	genome.wustl.edu	37	4	46264143	46264143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000807.2	-1	reviewed	p.V287I	1.000	176	0%	147	29.3%	0	-	possibly_damaging(0.935)	tolerated(1)	neutral(0.381)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA2	2555	genome.wustl.edu	37	4	46314593	46314593	+	Missense_Mutation	SNP	T	T	A	rs279858	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000807.2	-1	reviewed	p.K132N	0.949	138	0%	128	39.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRA4	2557	genome.wustl.edu	37	4	46930591	46930591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000809.2	-1	reviewed	p.A439V	0.908	153	0%	121	28.9%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRB1	2560	genome.wustl.edu	37	4	47034018	47034018	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000812.3	+1	reviewed	p.F56	1.000	172	0%	107	37.4%	0	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRB1	2560	genome.wustl.edu	37	4	47408817	47408817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000812.3	+1	reviewed	p.F318L	1.000	163	0%	132	28%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRB1	2560	genome.wustl.edu	37	4	47408856	47408856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000812.3	+1	reviewed	p.F331L	1.000	151	0%	131	15.3%	0	-	possibly_damaging(0.663)	deleterious(0.04)	deleterious(0.583)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CNGA1	1259	genome.wustl.edu	37	4	47938893	47938893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142564.1	-1	reviewed	p.D609N	1.000	370	0%	340	12.9%	0	-	possibly_damaging(0.906)	tolerated(0.32)	neutral(0.384)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
TXK	7294	genome.wustl.edu	37	4	48114415	48114415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003328.2	-1	validated	p.E97K	1.000	293	0%	210	30.5%	0	-	benign(0.028)	tolerated(0.11)	neutral(0.273)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
TEC	7006	genome.wustl.edu	37	4	48165743	48165743	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003215.2	-1	reviewed	p.K238T	1.000	24	0%	16	25%	0	-	benign(0.001)	tolerated(0.49)	neutral(0.011)	HMMSmart_SM00326,superfamily_SH2 domain
SLC10A4	201780	genome.wustl.edu	37	4	48490749	48490749	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152679.3	+1	validated	p.L369	0.515	67	0%	58	48.3%	0	-	-	-	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48580997	48580997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015030.1	-1	validated	p.D841N	1.000	212	0%	221	26.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48607814	48607814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015030.1	-1	validated	p.D260Y	1.000	225	0%	196	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
OCIAD1	54940	genome.wustl.edu	37	4	48835483	48835483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079839.2	+1	validated	p.S42R	1.000	78	0%	60	36.7%	93	45.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_OCIA
OCIAD1	54940	genome.wustl.edu	37	4	48859332	48859332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079839.2	+1	validated	p.K217R	1.000	280	0%	160	25.6%	114	47.3%	benign(0.089)	tolerated(0.3)	neutral(0.035)	NULL
DCUN1D4	23142	genome.wustl.edu	37	4	52729602	52729602	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040402.1	+1	validated	e2-1	1.000	310	0%	246	35%	0	-	-	-	-	-
DCUN1D4	23142	genome.wustl.edu	37	4	52765488	52765488	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040402.1	+1	validated	p.L187V	1.000	182	0%	117	30.8%	5	80%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DUF298
USP46	64854	genome.wustl.edu	37	4	53463854	53463854	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022832.3	-1	validated	p.S351	1.000	40	0%	34	20.6%	4	50%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
SCFD2	152579	genome.wustl.edu	37	4	53751933	53751933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152540.3	-1	validated	p.S648L	0.065	212	0%	184	25%	29	27.5%	possibly_damaging(0.664)	tolerated(0.76)	neutral(0.236)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
SCFD2	152579	genome.wustl.edu	37	4	54218806	54218806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152540.3	-1	validated	p.E322D	0.000	108	0%	69	21.7%	7	14.2%	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
LNX1	84708	genome.wustl.edu	37	4	54424125	54424125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032622.2	-1	reviewed	p.A3V	1.000	103	0%	83	12%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PDGFRA	5156	genome.wustl.edu	37	4	55130056	55130056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006206.4	+1	reviewed	p.K197T	0.601	126	0%	106	33%	5	0%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMSmart_SM00409,superfamily_Immunoglobulin
PDGFRA	5156	genome.wustl.edu	37	4	55139855	55139855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006206.4	+1	reviewed	p.L506F	0.000	41	0%	52	23.1%	5	0%	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_Immunoglobulin
PDGFRA	5156	genome.wustl.edu	37	4	55143657	55143657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006206.4	+1	reviewed	p.K630T	1.000	34	0%	49	36.7%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PDGFRA	5156	genome.wustl.edu	37	4	55146592	55146592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006206.4	+1	reviewed	p.D756N	1.000	98	0%	89	33.7%	11	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PDGFRA	5156	genome.wustl.edu	37	4	55161431	55161431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006206.4	+1	reviewed	p.F1088V	1.000	354	0%	293	30.4%	15	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KIT	3815	genome.wustl.edu	37	4	55564494	55564494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000222.2	+1	reviewed	p.E128K	1.000	52	0%	51	31.4%	0	-	possibly_damaging(0.951)	tolerated(0.13)	deleterious(0.647)	superfamily_SSF48726
KDR	3791	genome.wustl.edu	37	4	55953774	55953774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002253.2	-1	reviewed	p.S1221N	1.000	127	0%	106	23.6%	6	0%	probably_damaging(0.956)	tolerated(0.16)	neutral(0.459)	NULL
KDR	3791	genome.wustl.edu	37	4	55953884	55953884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002253.2	-1	reviewed	p.L1184F	1.000	200	0%	141	28.4%	5	0%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	NULL
KDR	3791	genome.wustl.edu	37	4	55955096	55955096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002253.2	-1	reviewed	p.R1150I	1.000	141	0%	90	28.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KDR	3791	genome.wustl.edu	37	4	55961109	55961109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002253.2	-1	reviewed	p.R944Q	0.764	187	0%	191	30.4%	3	0%	benign(0.027)	tolerated(0.27)	neutral(0.035)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PDCL2	132954	genome.wustl.edu	37	4	56428711	56428711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152401.2	-1	reviewed	p.F144C	1.000	135	0%	128	29.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd
EXOC1	55763	genome.wustl.edu	37	4	56768639	56768639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024924.1	+1	reviewed	p.K823Q	1.000	119	0%	132	28.8%	28	32.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Sec3
CEP135	9662	genome.wustl.edu	37	4	56851494	56851494	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025009.3	+1	validated	p.T609	0.951	95	0%	81	32.1%	0	-	-	-	-	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57193821	57193821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020722.1	+1	validated	p.D1185N	0.995	313	0%	287	31.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AASDH	132949	genome.wustl.edu	37	4	57204574	57204574	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181806.2	-1	validated	p.Q1097H	0.709	147	0%	76	26.3%	2	100%	benign(0)	deleterious(0.05)	neutral(0.345)	superfamily_Quinoprotein alcohol dehydrogenase-like
AASDH	132949	genome.wustl.edu	37	4	57237741	57237741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181806.2	-1	validated	p.V246A	1.000	181	0%	138	34.1%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PPAT	5471	genome.wustl.edu	37	4	57261630	57261630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002703.3	-1	reviewed	p.K481T	0.218	164	0%	120	39.2%	9	77.7%	benign(0.002)	tolerated(0.29)	neutral(0.029)	superfamily_PRTase-like
PAICS	10606	genome.wustl.edu	37	4	57314967	57314967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079525.1	+1	reviewed	p.R229Q	1.000	38	0%	41	41.5%	136	43.3%	possibly_damaging(0.844)	deleterious(0.05)	deleterious(0.669)	HMMPfam_SAICAR_synt,superfamily_SAICAR synthase-like
SRP72	6731	genome.wustl.edu	37	4	57355590	57355590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006947.3	+1	validated	p.D421Y	1.000	108	0%	68	14.7%	43	25.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF48452
REST	5978	genome.wustl.edu	37	4	57796165	57796165	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005612.3	+1	reviewed	p.E381*	1.000	243	0%	231	27.7%	7	42.8%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
REST	5978	genome.wustl.edu	37	4	57797473	57797473	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005612.3	+1	reviewed	p.R817*	0.003	415	0%	426	28.6%	4	25%	-	-	-	NULL
LPHN3	23284	genome.wustl.edu	37	4	62903477	62903477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015236.4	+1	reviewed	p.R1139Q	1.000	168	0%	144	25.7%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Latrophilin,superfamily_Family A G protein-coupled receptor-like
LOC644578	644578	genome.wustl.edu	37	4	64215759	64215759	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_927694.2	+1	model	p.F136	0.152	12	0%	16	31.2%	0	-	-	-	-	NULL
EPHA5	2044	genome.wustl.edu	37	4	66217263	66217263	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004439.5	-1	reviewed	p.I784	0.985	193	0%	132	30.3%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
EPHA5	2044	genome.wustl.edu	37	4	66270180	66270180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004439.5	-1	reviewed	p.D568N	1.000	125	0%	116	26.7%	0	-	possibly_damaging(0.591)	tolerated(0.3)	neutral(0.232)	NULL
EPHA5	2044	genome.wustl.edu	37	4	66280068	66280068	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004439.5	-1	reviewed	p.R541*	0.999	192	0%	105	37.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CENPC1	1060	genome.wustl.edu	37	4	68374791	68374791	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001812.2	-1	reviewed	p.E549*	0.983	135	0%	123	22.8%	1	0%	-	-	-	NULL
CENPC1	1060	genome.wustl.edu	37	4	68379879	68379879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001812.2	-1	reviewed	p.E453K	0.068	38	0%	18	33.3%	1	0%	benign(0)	tolerated(1)	-	NULL
STAP1	26228	genome.wustl.edu	37	4	68449415	68449415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012108.2	+1	reviewed	p.E218D	0.999	64	0%	71	29.6%	0	-	benign(0.009)	tolerated(0.5)	neutral(0.011)	HMMSmart_SM00252,superfamily_SH2 domain
GNRHR	2798	genome.wustl.edu	37	4	68619942	68619942	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000406.2	-1	reviewed	p.R38*	1.000	190	0%	242	24.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
TMPRSS11A	339967	genome.wustl.edu	37	4	68784809	68784809	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182606.3	-1	validated	p.V281	0.000	166	0%	133	30.1%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TMPRSS11F	389208	genome.wustl.edu	37	4	68939704	68939704	+	Silent	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207407.2	-1	validated	p.S102	1.000	73	0%	46	45.7%	0	-	-	-	-	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
TMPRSS11B	132724	genome.wustl.edu	37	4	69095124	69095124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182502.3	-1	validated	p.G266E	0.000	236	0%	166	35.5%	0	-	probably_damaging(0.981)	tolerated(1)	neutral(0.425)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
YTHDC1	91746	genome.wustl.edu	37	4	69202841	69202841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031732.2	-1	validated	p.D263Y	1.000	298	0%	217	35.9%	7	57.1%	unknown(0)	deleterious(0)	-	NULL
TMPRSS11E	28983	genome.wustl.edu	37	4	69334603	69334603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014058.3	+1	validated	p.N89H	0.997	287	0%	254	36.6%	0	-	benign(0.006)	tolerated(0.14)	neutral(0.249)	HMMPfam_SEA,superfamily_SSF82671
TMPRSS11E	28983	genome.wustl.edu	37	4	69334637	69334637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014058.3	+1	validated	p.F100S	0.614	313	0%	269	24.2%	0	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	HMMPfam_SEA,superfamily_SSF82671
TMPRSS11E	28983	genome.wustl.edu	37	4	69343140	69343140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014058.3	+1	validated	p.S254L	0.000	1027	0%	997	13.7%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
UGT2B17	7367	genome.wustl.edu	37	4	69417604	69417604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077.3	-1	reviewed	p.K344T	1.000	354	0.3%	338	30.5%	2	0%	benign(0.009)	tolerated(0.4)	neutral(0.017)	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B10	7365	genome.wustl.edu	37	4	69681885	69681885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001075.4	+1	validated	p.H50N	1.000	294	0%	325	27.4%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69682273	69682273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001075.4	+1	validated	p.F179C	0.001	302	0%	254	31.5%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B7	7364	genome.wustl.edu	37	4	69978239	69978239	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001074.2	+1	validated	p.R459*	0.513	190	0.5%	269	23.8%	25	28%	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B4	7363	genome.wustl.edu	37	4	70346495	70346495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021139.2	-1	validated	p.D482Y	0.792	313	0%	288	33.3%	0	-	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	HMMPfam_UDPGT
UGT2B4	7363	genome.wustl.edu	37	4	70352411	70352411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021139.2	-1	validated	p.L336M	0.033	378	0%	327	26.9%	0	-	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A1	10941	genome.wustl.edu	37	4	70512755	70512755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006798.2	-1	validated	p.Q203L	0.994	191	0%	133	27.8%	0	-	possibly_damaging(0.499)	tolerated(0.05)	deleterious(0.512)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1B1	27284	genome.wustl.edu	37	4	70596288	70596288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014465.3	-1	reviewed	p.P237S	0.374	135	0%	106	33%	0	-	benign(0.021)	deleterious(0.05)	neutral(0.346)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
ODAM	54959	genome.wustl.edu	37	4	71068570	71068570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017855.3	+1	validated	p.S249N	0.659	167	0%	137	34.3%	0	-	benign(0.119)	tolerated(0.11)	neutral(0.281)	NULL
CABS1	85438	genome.wustl.edu	37	4	71201148	71201148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033122.3	+1	validated	p.S131Y	0.991	231	0%	213	34.7%	0	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
SMR3A	26952	genome.wustl.edu	37	4	71232584	71232584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012390.3	+1	validated	p.S93Y	0.000	479	0%	481	29.3%	0	-	unknown(0)	deleterious(0.03)	-	NULL
PROL1	58503	genome.wustl.edu	37	4	71265020	71265020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021225.4	+1	reviewed	p.F6L	0.029	110	0%	74	33.8%	0	-	benign(0.001)	-	-	NULL
MUC7	4589	genome.wustl.edu	37	4	71346888	71346888	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145006.1	+1	reviewed	p.E143*	0.000	704	0%	506	29.6%	0	-	-	-	-	NULL
AMTN	401138	genome.wustl.edu	37	4	71396973	71396973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_212557.2	+1	validated	p.R192M	0.003	108	0%	81	29.6%	3	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
AMBN	258	genome.wustl.edu	37	4	71469002	71469002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016519.4	+1	reviewed	p.S225Y	0.980	104	0%	109	28.4%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Amelin,HMMSmart_SM00817
AMBN	258	genome.wustl.edu	37	4	71472054	71472054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016519.4	+1	reviewed	p.E317D	0.989	66	0%	72	26.4%	0	-	possibly_damaging(0.62)	tolerated(0.12)	deleterious(0.477)	HMMPfam_Amelin,HMMSmart_SM00817
ENAM	10117	genome.wustl.edu	37	4	71509326	71509326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031889.2	+1	reviewed	p.F728C	0.909	474	0%	438	27.9%	0	-	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	NULL
ENAM	10117	genome.wustl.edu	37	4	71509662	71509662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031889.2	+1	reviewed	p.S840Y	0.625	306	0%	326	27.9%	0	-	probably_damaging(0.986)	deleterious(0.05)	deleterious(0.780)	NULL
RUFY3	22902	genome.wustl.edu	37	4	71656992	71656992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014961.3	+1	validated	p.K463T	1.000	142	0%	124	23.4%	1	100%	possibly_damaging(0.462)	deleterious(0.01)	deleterious(0.557)	NULL
SLC4A4	8671	genome.wustl.edu	37	4	72316136	72316136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134742.1	+1	reviewed	p.D362Y	1.000	41	0%	41	34.1%	0	-	possibly_damaging(0.691)	deleterious(0)	deleterious(0.692)	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
SLC4A4	8671	genome.wustl.edu	37	4	72332207	72332207	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134742.1	+1	reviewed	p.F515C	1.000	390	0%	313	31.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
SLC4A4	8671	genome.wustl.edu	37	4	72423599	72423599	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134742.1	+1	reviewed	p.V978	1.000	75	0%	66	36.4%	0	-	-	-	-	NULL
GC	2638	genome.wustl.edu	37	4	72623809	72623809	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000583.2	-1	reviewed	p.I261L	0.040	193	0%	171	31.6%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
NPFFR2	10886	genome.wustl.edu	37	4	72994605	72994605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004885.2	+1	reviewed	p.M201I	1.000	223	0%	147	34%	0	-	benign(0.312)	tolerated(0.35)	neutral(0.118)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NPFFR2	10886	genome.wustl.edu	37	4	73012758	73012758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004885.2	+1	reviewed	p.I266M	0.406	495	0.2%	360	34.7%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NPFFR2	10886	genome.wustl.edu	37	4	73012871	73012871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004885.2	+1	reviewed	p.P304L	1.000	240	0%	225	31.6%	0	-	benign(0.039)	tolerated(0.26)	neutral(0.036)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ADAMTS3	9508	genome.wustl.edu	37	4	73161404	73161404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014243.1	-1	reviewed	p.R897Q	1.000	306	0%	229	31%	1	0%	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ANKRD17	26057	genome.wustl.edu	37	4	74007970	74007970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032217.3	-1	reviewed	p.D740N	1.000	172	0.6%	143	31.5%	10	70%	benign(0.349)	deleterious(0)	deleterious(0.555)	superfamily_Ankyrin repeat
ANKRD17	26057	genome.wustl.edu	37	4	74012582	74012582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032217.3	-1	reviewed	p.V590I	1.000	169	0%	119	28.6%	3	33.3%	benign(0.215)	tolerated(0.2)	neutral(0.070)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD17	26057	genome.wustl.edu	37	4	74027009	74027009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032217.3	-1	reviewed	p.R202W	1.000	100	0%	80	36.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ALB	213	genome.wustl.edu	37	4	74275179	74275179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000477.5	+1	reviewed	p.D197G	0.775	240	0%	208	30.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	PatternScan_ALBUMIN,superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ALB	213	genome.wustl.edu	37	4	74286034	74286034	+	Missense_Mutation	SNP	C	C	A	rs61332165	byCluster;byFrequency;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380904	+1	known	p.S617Y	0.927	84	0%	96	25%	0	-	-	-	-	NULL
AFP	174	genome.wustl.edu	37	4	74318282	74318282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134.1	+1	reviewed	p.F531L	1.000	111	0%	121	38%	4	75%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
AFM	173	genome.wustl.edu	37	4	74357795	74357795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001133.2	+1	reviewed	p.F350L	0.781	128	0%	139	28.8%	0	-	possibly_damaging(0.929)	tolerated(0.05)	deleterious(0.722)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
RCHY1	25898	genome.wustl.edu	37	4	76415903	76415903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015436.2	-1	reviewed	p.R182K	1.000	179	0%	147	34%	19	36.8%	benign(0.018)	tolerated(0.27)	neutral(0.034)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
G3BP2	9908	genome.wustl.edu	37	4	76572294	76572294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012297.4	-1	validated	p.R326C	1.000	155	0%	107	32.7%	41	31.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNA-binding domain RBD
SDAD1	55153	genome.wustl.edu	37	4	76903159	76903159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018115.2	-1	validated	p.N41S	1.000	259	0%	203	33.5%	7	28.5%	benign(0.042)	tolerated(0.92)	neutral(0.003)	superfamily_ARM repeat
ART3	419	genome.wustl.edu	37	4	77022158	77022158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130016.1	+1	validated	p.K308T	0.492	291	0%	221	27.1%	0	-	benign(0.338)	tolerated(0.58)	neutral(0.112)	NULL
NUP54	53371	genome.wustl.edu	37	4	77055443	77055443	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017426.2	-1	reviewed	p.E199*	1.000	80	0%	67	32.8%	6	0%	-	-	-	NULL
SCARB2	950	genome.wustl.edu	37	4	77084466	77084466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005506.2	-1	reviewed	p.N437S	1.000	183	0%	138	26.1%	131	38.9%	possibly_damaging(0.731)	tolerated(0.17)	neutral(0.326)	HMMPfam_CD36
CCDC158	339965	genome.wustl.edu	37	4	77288816	77288816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042784.1	-1	validated	p.K487N	1.000	87	0%	74	31.1%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79308664	79308664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025074.6	+1	reviewed	p.H1261N	0.865	146	0%	135	29.6%	0	-	benign(0.351)	tolerated(0.08)	neutral(0.411)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79308783	79308783	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025074.6	+1	reviewed	p.D1300	0.592	101	0%	79	35.4%	0	-	-	-	-	NULL
FRAS1	80144	genome.wustl.edu	37	4	79362356	79362356	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025074.6	+1	reviewed	p.F1856C	1.000	48	0%	34	17.6%	1	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
GK2	2712	genome.wustl.edu	37	4	80328763	80328763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033214.2	-1	validated	p.D198Y	1.000	354	0%	304	29.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FGGY_N,superfamily_SSF53067
ANTXR2	118429	genome.wustl.edu	37	4	80899325	80899325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145794.1	-1	reviewed	p.R395C	1.000	98	0%	60	30%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ant_C
ANTXR2	118429	genome.wustl.edu	37	4	80976587	80976587	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145794.1	-1	reviewed	p.K138T	1.000	44	0%	32	28.1%	4	0%	benign(0.01)	tolerated(0.1)	neutral(0.287)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PRKG2	5593	genome.wustl.edu	37	4	82026990	82026990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006259.1	-1	provisional	p.E680D	0.927	259	0%	186	32.8%	0	-	benign(0.066)	tolerated(0.59)	neutral(0.009)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SCD5	79966	genome.wustl.edu	37	4	83601922	83601922	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037582.2	-1	validated	p.E169	1.000	170	0%	138	32.6%	32	25%	-	-	-	HMMPfam_FA_desaturase
SEC31A	22872	genome.wustl.edu	37	4	83793119	83793119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077207.1	-1	reviewed	p.R254C	1.000	114	0%	108	27.8%	41	29.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NKX6-1	4825	genome.wustl.edu	37	4	85414576	85414576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006168.2	-1	validated	p.D324N	1.000	94	0%	97	11.3%	1	0%	unknown(0)	deleterious(0.04)	-	NULL
WDFY3	23001	genome.wustl.edu	37	4	85654715	85654715	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014991.4	-1	reviewed	p.I2347	0.843	133	0%	143	35.7%	3	66.6%	-	-	-	superfamily_Cyclin-like
ARHGAP24	83478	genome.wustl.edu	37	4	86915791	86915791	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025616.2	+1	validated	p.L328	0.496	349	0%	259	30.1%	1	0%	-	-	-	superfamily_GTPase activation domain GAP
MAPK10	5602	genome.wustl.edu	37	4	87024347	87024347	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000515400	-1	known	p.P52S	1.000	146	0.7%	115	20%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PTPN13	5783	genome.wustl.edu	37	4	87622552	87622552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080685.2	+1	reviewed	p.R265C	0.791	144	0%	94	34%	0	-	possibly_damaging(0.598)	deleterious(0.01)	deleterious(0.613)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87622898	87622898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080685.2	+1	reviewed	p.R380Q	1.000	279	0%	206	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87653854	87653854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080685.2	+1	reviewed	p.F598S	0.997	175	0%	146	27.4%	1	0%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
PTPN13	5783	genome.wustl.edu	37	4	87666165	87666165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080685.2	+1	reviewed	p.G845D	0.977	46	0%	44	45.5%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_FERM_C,superfamily_SSF50729
PTPN13	5783	genome.wustl.edu	37	4	87690981	87690981	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080685.2	+1	reviewed	p.R1522*	1.000	171	0%	101	16.8%	2	0%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
AFF1	4299	genome.wustl.edu	37	4	88053513	88053513	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005935.2	+1	validated	p.F1081	0.753	126	0%	133	27.1%	3	0%	-	-	-	HMMPfam_AF-4
IBSP	3381	genome.wustl.edu	37	4	88731793	88731793	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004967.3	+1	reviewed	p.S94	0.233	272	0%	220	29.5%	5	0%	-	-	-	HMMPfam_BSP_II
MEPE	56955	genome.wustl.edu	37	4	88766992	88766992	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020203.3	+1	validated	p.A324	0.000	156	0%	154	29.2%	0	-	-	-	-	NULL
PKD2	5311	genome.wustl.edu	37	4	88977296	88977296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000297.2	+1	reviewed	p.R592Q	1.000	276	0%	162	29%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PKD_channel,superfamily_SSF81324
PKD2	5311	genome.wustl.edu	37	4	88977307	88977307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000297.2	+1	reviewed	p.D596Y	1.000	263	0%	151	35.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PKD_channel,superfamily_SSF81324
PKD2	5311	genome.wustl.edu	37	4	88983132	88983132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000297.2	+1	reviewed	p.M698I	1.000	163	0%	96	35.4%	5	40%	possibly_damaging(0.95)	tolerated(0.2)	neutral(0.443)	superfamily_SSF47473
PKD2	5311	genome.wustl.edu	37	4	88986625	88986625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000297.2	+1	reviewed	p.E740K	1.000	243	0%	190	31.1%	10	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF47473
PPM1K	152926	genome.wustl.edu	37	4	89199722	89199722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152542.3	-1	validated	p.A5V	1.000	59	0%	54	37%	0	-	benign(0.022)	tolerated(0.3)	neutral(0.030)	NULL
HERC6	55008	genome.wustl.edu	37	4	89317276	89317276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017912.3	+1	validated	p.S290L	0.999	39	0%	46	23.9%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC6	55008	genome.wustl.edu	37	4	89358081	89358081	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017912.3	+1	validated	p.D814	0.039	96	0%	85	24.7%	8	37.5%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC5	51191	genome.wustl.edu	37	4	89383346	89383346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016323.2	+1	reviewed	p.F176C	0.000	51	0%	43	41.9%	0	-	benign(0.005)	tolerated(0.24)	neutral(0.037)	superfamily_RCC1/BLIP-II
FAM13A	10144	genome.wustl.edu	37	4	89652515	89652515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014883.2	-1	validated	p.R970W	1.000	41	0%	30	30%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89679915	89679915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014883.2	-1	validated	p.K572N	0.994	107	0%	112	31.2%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89859273	89859273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014883.2	-1	validated	p.R242K	0.001	134	0%	120	26.7%	0	-	unknown(0)	deleterious(0)	-	NULL
TIGD2	166815	genome.wustl.edu	37	4	90034395	90034395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145715.2	+1	reviewed	p.Q90H	1.000	158	0%	110	32.7%	2	100%	probably_damaging(0.992)	tolerated(0.05)	deleterious(0.793)	HMMSmart_CENPB,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind
MMRN1	22915	genome.wustl.edu	37	4	90856316	90856316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007351.2	+1	reviewed	p.E495D	0.135	134	0%	117	29.9%	0	-	probably_damaging(0.996)	tolerated(0.21)	deleterious(0.506)	NULL
MMRN1	22915	genome.wustl.edu	37	4	90856949	90856949	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007351.2	+1	reviewed	p.V706	0.031	74	1.4%	83	21.7%	0	-	-	-	-	NULL
MMRN1	22915	genome.wustl.edu	37	4	90857582	90857582	+	Missense_Mutation	SNP	C	C	A	rs185952075	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007351.2	+1	reviewed	p.F917L	0.974	77	0%	79	30.4%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
MMRN1	22915	genome.wustl.edu	37	4	90872801	90872801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007351.2	+1	reviewed	p.T1055M	0.995	117	0%	112	37.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
FAM190A	401145	genome.wustl.edu	37	4	91230248	91230248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145065.1	+1	validated	p.M271I	0.009	415	0%	376	27.4%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
GRID2	2895	genome.wustl.edu	37	4	94032024	94032024	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001510.2	+1	validated	p.E219*	1.000	133	0%	140	38.6%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
SMARCAD1	56916	genome.wustl.edu	37	4	95201893	95201893	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128429.1	+1	validated	p.R859*	0.651	192	0%	157	25.5%	9	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
UNC5C	8633	genome.wustl.edu	37	4	96163618	96163618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003728.2	-1	reviewed	p.L357W	1.000	65	0%	54	25.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
UNC5C	8633	genome.wustl.edu	37	4	96163728	96163728	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003728.2	-1	reviewed	p.T320	0.165	39	0%	27	25.9%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PDHA2	5161	genome.wustl.edu	37	4	96762404	96762404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005390.4	+1	validated	p.S368I	0.006	216	0%	212	28.8%	0	-	benign(0.059)	tolerated(0.36)	neutral(0.024)	superfamily_SSF52518
C4orf37	285555	genome.wustl.edu	37	4	99027127	99027127	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174952.2	-1	validated	p.I197L	0.837	64	0%	41	34.1%	0	-	possibly_damaging(0.619)	tolerated(0.28)	neutral(0.247)	NULL
C4orf37	285555	genome.wustl.edu	37	4	99030407	99030407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174952.2	-1	validated	p.S146Y	0.196	221	0%	206	15%	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
RAP1GDS1	5910	genome.wustl.edu	37	4	99325714	99325714	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100426.1	+1	validated	p.E243*	1.000	263	0%	188	29.8%	15	0%	-	-	-	superfamily_ARM repeat
LOC100287782	100287782	genome.wustl.edu	37	4	99877910	99877910	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342458.1	+1	model	p.L127	0.792	62	0%	37	24.3%	0	-	-	-	-	NULL
METAP1	23173	genome.wustl.edu	37	4	99960603	99960603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015143.2	+1	validated	p.R140Q	1.000	155	0%	107	27.1%	24	45.8%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
METAP1	23173	genome.wustl.edu	37	4	99969962	99969962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015143.2	+1	validated	p.R289Q	1.000	287	0%	244	34.8%	17	35.2%	possibly_damaging(0.684)	deleterious(0.02)	deleterious(0.627)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
ADH1B	125	genome.wustl.edu	37	4	100231963	100231963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000668.4	-1	reviewed	p.E354D	0.910	158	0%	132	11.4%	0	-	benign(0)	tolerated(0.97)	-	superfamily_GroES-like
MTTP	4547	genome.wustl.edu	37	4	100532354	100532354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000253.2	+1	reviewed	p.F608L	0.997	142	0%	163	28.8%	0	-	probably_damaging(0.999)	tolerated(0.44)	deleterious(0.503)	superfamily_LV_superhelical
DDIT4L	115265	genome.wustl.edu	37	4	101109007	101109007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145244.2	-1	provisional	p.T137A	0.997	85	0%	87	29.9%	15	46.6%	probably_damaging(0.971)	tolerated(0.36)	neutral(0.433)	HMMPfam_RTP801_C
BANK1	55024	genome.wustl.edu	37	4	102946540	102946540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017935.4	+1	reviewed	p.F490L	0.132	127	0%	157	41.4%	3	0%	possibly_damaging(0.791)	tolerated(0.21)	neutral(0.340)	superfamily_Ankyrin repeat
SLC39A8	64116	genome.wustl.edu	37	4	103189057	103189057	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135146.1	-1	reviewed	p.I340	1.000	70	0%	97	33%	10	0%	-	-	-	HMMPfam_Zip
UBE2D3	7323	genome.wustl.edu	37	4	103718615	103718615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181893.1	-1	reviewed	p.Y136C	1.000	407	0%	259	27.4%	216	31.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
SLC9B1	150159	genome.wustl.edu	37	4	103822451	103822451	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139173.2	-1	reviewed	p.V457	0.000	387	0%	346	15%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
CENPE	1062	genome.wustl.edu	37	4	104029996	104029996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001813.2	-1	validated	p.R2659C	0.386	206	0%	178	29.8%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CENPE	1062	genome.wustl.edu	37	4	104061028	104061028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001813.2	-1	validated	p.R2041I	0.565	285	0%	187	33.2%	0	-	possibly_damaging(0.8)	deleterious(0.03)	deleterious(0.665)	NULL
CENPE	1062	genome.wustl.edu	37	4	104068792	104068792	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001813.2	-1	validated	p.L1285	0.228	185	0%	214	25.2%	2	0%	-	-	-	NULL
TACR3	6870	genome.wustl.edu	37	4	104640686	104640686	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001059.1	-1	reviewed	p.G49	0.074	68	0%	69	31.9%	0	-	-	-	-	NULL
PPA2	27068	genome.wustl.edu	37	4	106367639	106367639	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000515567	-1	known	p.E15*	1.000	289	0%	203	29.6%	52	50%	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMPfam_Pyrophosphatase,superfamily_Inorganic pyrophosphatase
TBCK	93627	genome.wustl.edu	37	4	107016791	107016791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033115.3	-1	validated	p.R744C	0.999	301	0%	232	25.9%	10	40%	possibly_damaging(0.866)	tolerated(0.06)	deleterious(0.658)	HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_Rhodanese-like
AIMP1	9255	genome.wustl.edu	37	4	107248644	107248644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142416.1	+1	reviewed	p.R73Q	1.000	131	0%	83	33.7%	54	51.8%	benign(0.046)	tolerated(0.36)	neutral(0.022)	NULL
DKK2	27123	genome.wustl.edu	37	4	107956665	107956665	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014421.2	-1	reviewed	p.I28	0.983	105	0%	77	31.2%	1	0%	-	-	-	NULL
PAPSS1	9061	genome.wustl.edu	37	4	108574727	108574727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005443.4	-1	validated	p.R386Q	1.000	172	0%	160	27.5%	44	34%	benign(0.195)	deleterious(0.03)	neutral(0.383)	HMMPfam_ATP-sulfurylase,superfamily_PUA domain-like
LEF1	51176	genome.wustl.edu	37	4	108999451	108999451	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016269.4	-1	reviewed	p.K311N	1.000	408	0%	410	42.9%	19	31.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
AGXT2L1	64850	genome.wustl.edu	37	4	109680996	109680996	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031279.3	-1	validated	p.R82*	0.990	72	0%	64	29.7%	6	0%	-	-	-	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
CASP6	839	genome.wustl.edu	37	4	110612145	110612145	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001226.3	-1	reviewed	p.H168	0.119	105	0%	91	29.7%	92	43.4%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
LRIT3	345193	genome.wustl.edu	37	4	110791094	110791094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198506.2	+1	validated	p.F352V	0.021	478	0%	390	29.2%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
EGF	1950	genome.wustl.edu	37	4	110834531	110834531	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001963.4	+1	reviewed	p.K14Q	0.000	99	0%	73	34.2%	1	100%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
ENPEP	2028	genome.wustl.edu	37	4	111427802	111427802	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001977.3	+1	validated	p.Y310D	1.000	147	0%	131	28.2%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
AP1AR	55435	genome.wustl.edu	37	4	113186955	113186955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018569.4	+1	validated	p.R169Q	1.000	64	0%	48	37.5%	10	40%	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	NULL
LARP7	51574	genome.wustl.edu	37	4	113565907	113565907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015454.1	+1	validated	p.R28W	0.998	247	0%	239	29.7%	7	71.4%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	"superfamily_""Winged helix"" DNA-binding domain"
LARP7	51574	genome.wustl.edu	37	4	113570694	113570694	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000511529	+1	known	p.A176V	0.003	61	0%	49	34.7%	20	20%	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114095619	114095619	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001148.4	+1	reviewed	p.L44	1.000	69	0%	59	22%	0	-	-	-	-	HMMSmart_ANK,superfamily_ANK
ANK2	287	genome.wustl.edu	37	4	114186129	114186129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001148.4	+1	reviewed	p.A488V	1.000	4	0.000	6	0.833	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANK2	287	genome.wustl.edu	37	4	114274668	114274668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001148.4	+1	reviewed	p.D1632Y	0.997	303	0%	334	29.3%	0	-	probably_damaging(0.996)	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114276026	114276026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001148.4	+1	reviewed	p.K2084N	1.000	286	0%	263	31.6%	0	-	benign(0.167)	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114277820	114277820	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001148.4	+1	reviewed	p.L2682	0.000	304	0%	247	32%	0	-	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114278727	114278727	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001148.4	+1	reviewed	p.E2985*	0.000	527	0%	448	13.4%	0	-	-	-	-	NULL
ARSJ	79642	genome.wustl.edu	37	4	114823685	114823685	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024590.3	-1	validated	p.I515	0.001	69	0%	77	32.5%	8	50%	-	-	-	superfamily_Alkaline phosphatase-like
ARSJ	79642	genome.wustl.edu	37	4	114823779	114823779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024590.3	-1	validated	p.R484Q	0.752	114	0%	113	31.9%	6	33.3%	probably_damaging(0.989)	tolerated(0.2)	deleterious(0.488)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
ARSJ	79642	genome.wustl.edu	37	4	114824392	114824392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024590.3	-1	validated	p.E280K	0.823	166	0%	147	24.5%	7	14.2%	benign(0.003)	tolerated(0.62)	neutral(0.004)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
ARSJ	79642	genome.wustl.edu	37	4	114899657	114899657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024590.3	-1	validated	p.K112E	1.000	239	0%	232	28%	4	25%	possibly_damaging(0.848)	tolerated(0.07)	deleterious(0.645)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
UGT8	7368	genome.wustl.edu	37	4	115544340	115544340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128174.1	+1	validated	p.E102K	1.000	164	0%	141	31.9%	0	-	possibly_damaging(0.791)	tolerated(0.26)	neutral(0.331)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT8	7368	genome.wustl.edu	37	4	115589341	115589341	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128174.1	+1	validated	p.G381	0.997	216	0%	149	22.8%	0	-	-	-	-	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
NDST4	64579	genome.wustl.edu	37	4	115769486	115769486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022569.1	-1	provisional	p.A609T	1.000	121	0%	100	23%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
NDST4	64579	genome.wustl.edu	37	4	115858545	115858545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022569.1	-1	provisional	p.T446A	1.000	134	0%	91	29.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SEC24D	9871	genome.wustl.edu	37	4	119659450	119659450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014822.2	-1	reviewed	p.R821Q	0.997	161	0%	107	26.2%	25	24%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24
USP53	54532	genome.wustl.edu	37	4	120192867	120192867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019050.2	+1	validated	p.K618E	0.051	162	0%	147	27.9%	0	-	possibly_damaging(0.521)	deleterious(0.03)	deleterious(0.540)	NULL
USP53	54532	genome.wustl.edu	37	4	120193173	120193173	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019050.2	+1	validated	p.E720*	0.986	224	0%	210	36.7%	1	0%	-	-	-	NULL
PDE5A	8654	genome.wustl.edu	37	4	120528301	120528301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083.3	-1	reviewed	p.S102P	1.000	202	0%	155	34.2%	0	-	possibly_damaging(0.861)	deleterious(0.01)	deleterious(0.739)	NULL
PRDM5	11107	genome.wustl.edu	37	4	121702379	121702379	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018699.2	-1	reviewed	p.V454	0.905	87	0%	84	32.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TNIP3	79931	genome.wustl.edu	37	4	122075732	122075732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128843.1	-1	validated	p.E156K	0.973	137	0%	97	25.8%	2	0%	possibly_damaging(0.858)	tolerated(0.2)	neutral(0.380)	NULL
EXOSC9	5393	genome.wustl.edu	37	4	122735078	122735078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001034194.1	+1	validated	p.E344D	1.000	214	0%	193	31.6%	32	31.2%	benign(0.389)	tolerated(0.45)	neutral(0.137)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122820844	122820844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130698.1	-1	validated	p.L824I	1.000	144	0%	120	24.2%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122846208	122846208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130698.1	-1	validated	p.R381C	1.000	272	0%	245	31%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122853627	122853627	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130698.1	-1	validated	p.P262	0.978	56	0%	57	50.9%	0	-	-	-	-	HMMPfam_Ank
KIAA1109	84162	genome.wustl.edu	37	4	123165058	123165058	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015312.3	+1	reviewed	p.E1598*	1.000	120	0%	125	33.6%	0	-	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123175362	123175362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015312.3	+1	reviewed	p.E1979K	1.000	164	0%	149	32.2%	1	0%	possibly_damaging(0.945)	tolerated(0.8)	neutral(0.390)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123239306	123239306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015312.3	+1	reviewed	p.L3559V	1.000	241	0.4%	195	27.2%	2	50%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123265699	123265699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015312.3	+1	reviewed	p.T4239M	1.000	187	0%	143	29.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123276965	123276965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015312.3	+1	reviewed	p.R4774C	0.999	91	0%	56	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FSA_C
ADAD1	132612	genome.wustl.edu	37	4	123301256	123301256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139243.3	+1	validated	p.S11L	0.998	100	0%	75	24%	0	-	benign(0.167)	deleterious(0)	neutral(0.460)	NULL
ADAD1	132612	genome.wustl.edu	37	4	123332493	123332493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139243.3	+1	validated	p.I322T	1.000	205	0%	156	25.6%	0	-	possibly_damaging(0.487)	deleterious(0.02)	deleterious(0.545)	HMMPfam_A_deamin,HMMSmart_SM00552
IL2	3558	genome.wustl.edu	37	4	123372934	123372934	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000586.3	-1	reviewed	p.C145	1.000	94	0%	55	30.9%	0	-	-	-	-	HMMPfam_IL2,HMMSmart_SM00189,superfamily_4-helical cytokines
BBS12	166379	genome.wustl.edu	37	4	123663646	123663646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152618.2	+1	reviewed	p.F200C	0.000	182	0%	136	32.4%	6	33.3%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
BBS12	166379	genome.wustl.edu	37	4	123664849	123664849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152618.2	+1	reviewed	p.T601N	0.245	105	0%	97	29.9%	4	0%	possibly_damaging(0.481)	deleterious(0.02)	deleterious(0.542)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
NUDT6	11162	genome.wustl.edu	37	4	123838790	123838790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007083.3	-1	validated	p.R103Q	0.856	105	0%	96	31.2%	11	27.2%	benign(0.222)	tolerated(0.35)	neutral(0.042)	NULL
NUDT6	11162	genome.wustl.edu	37	4	123838799	123838799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007083.3	-1	validated	p.L100P	0.996	111	0%	100	27%	12	66.6%	possibly_damaging(0.477)	tolerated(0.27)	neutral(0.191)	NULL
SPATA5	166378	genome.wustl.edu	37	4	123949434	123949434	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145207.2	+1	validated	p.R655*	0.990	335	0%	369	28.2%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD50	57182	genome.wustl.edu	37	4	125592223	125592223	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020337.2	-1	validated	p.R737*	0.979	150	0%	168	31%	5	20%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FAT4	79633	genome.wustl.edu	37	4	126241383	126241383	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024582.4	+1	validated	p.L1273	0.274	185	0%	137	29.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126242019	126242019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024582.4	+1	validated	p.D1485N	1.000	214	0%	142	28.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126373668	126373668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024582.4	+1	validated	p.L3833I	0.757	83	0%	75	36%	2	50%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMSmart_SM00181,superfamily_EGF/Laminin
HSPA4L	22824	genome.wustl.edu	37	4	128703724	128703724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014278.2	+1	provisional	p.D7Y	1.000	39	0%	36	30.6%	15	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF53067
HSPA4L	22824	genome.wustl.edu	37	4	128726313	128726313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014278.2	+1	provisional	p.F357L	1.000	69	0%	58	19%	16	50%	possibly_damaging(0.929)	tolerated(0.25)	neutral(0.413)	HMMPfam_HSP70,superfamily_SSF53067
HSPA4L	22824	genome.wustl.edu	37	4	128732660	128732660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014278.2	+1	provisional	p.R483C	1.000	111	0%	98	31.6%	17	64.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF100920
PHF17	79960	genome.wustl.edu	37	4	129773322	129773322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199320.2	+1	validated	p.E199K	1.000	139	0%	129	27.9%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FYVE/PHD zinc finger
SCLT1	132320	genome.wustl.edu	37	4	130014225	130014225	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144643.2	-1	validated	p.N12H	1.000	121	0%	65	26.2%	7	28.5%	benign(0.005)	tolerated(0.2)	neutral(0.049)	NULL
PCDH10	57575	genome.wustl.edu	37	4	134073168	134073168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032961.1	+1	reviewed	p.E625K	1.000	25	0%	31	32.3%	0	-	possibly_damaging(0.614)	deleterious(0.01)	deleterious(0.619)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH10	57575	genome.wustl.edu	37	4	134111306	134111306	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032961.1	+1	reviewed	p.R1038	1.000	70	0%	59	28.8%	0	-	-	-	-	NULL
PCDH18	54510	genome.wustl.edu	37	4	138442664	138442664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019035.3	-1	reviewed	p.S976Y	0.004	137	0%	114	24.6%	7	0%	benign(0.066)	deleterious(0.01)	neutral(0.410)	NULL
PCDH18	54510	genome.wustl.edu	37	4	138451388	138451388	+	Missense_Mutation	SNP	C	C	T	rs181780749	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019035.3	-1	reviewed	p.A619T	0.980	409	0%	353	14.7%	6	0%	benign(0.005)	tolerated(0.07)	neutral(0.319)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH18	54510	genome.wustl.edu	37	4	138452718	138452718	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019035.3	-1	reviewed	p.S175	0.005	131	0%	132	31.8%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
NAA15	80155	genome.wustl.edu	37	4	140306112	140306112	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_057175.3	+1	validated	p.S761*	1.000	141	0%	123	30.9%	15	13.3%	-	-	-	NULL
MAML3	55534	genome.wustl.edu	37	4	140811599	140811599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018717.4	-1	validated	p.E331K	1.000	366	0%	319	31%	4	0%	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
CLGN	1047	genome.wustl.edu	37	4	141313762	141313762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130675.1	-1	reviewed	p.F490C	1.000	126	0%	113	15%	7	14.2%	possibly_damaging(0.694)	tolerated(0.05)	deleterious(0.595)	NULL
CLGN	1047	genome.wustl.edu	37	4	141315053	141315053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130675.1	-1	reviewed	p.S431L	1.000	104	0%	87	24.1%	14	42.8%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_Concanavalin A-like lectins/glucanases
UCP1	7350	genome.wustl.edu	37	4	141484541	141484541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021833.4	-1	reviewed	p.R153C	0.998	200	0%	162	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
TBC1D9	23158	genome.wustl.edu	37	4	141560497	141560497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015130.2	-1	validated	p.T808M	0.999	31	0%	25	44%	5	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_EF-hand
TBC1D9	23158	genome.wustl.edu	37	4	141590794	141590794	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015130.2	-1	validated	p.P477	0.174	51	0%	38	34.2%	2	0%	-	-	-	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141600118	141600118	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015130.2	-1	validated	p.K277*	1.000	347	0%	317	33.8%	4	0%	-	-	-	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141600291	141600291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015130.2	-1	validated	p.D219G	0.998	290	0%	248	29.8%	2	0%	possibly_damaging(0.856)	deleterious(0.01)	deleterious(0.736)	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141622708	141622708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015130.2	-1	validated	p.R64Q	1.000	92	0%	106	32.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF330	27309	genome.wustl.edu	37	4	142145764	142145764	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014487.4	+1	validated	p.R48	0.522	263	0%	302	26.8%	20	70%	-	-	-	HMMPfam_NOA36
INPP4B	8821	genome.wustl.edu	37	4	143007359	143007359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001101669.1	-1	reviewed	p.L809I	1.000	103	0%	79	32.9%	9	55.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
INPP4B	8821	genome.wustl.edu	37	4	143326370	143326370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001101669.1	-1	reviewed	p.E82K	0.999	50	0%	64	42.2%	4	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
GAB1	2549	genome.wustl.edu	37	4	144378863	144378863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207123.2	+1	reviewed	p.P539H	1.000	75	0%	49	42.9%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
GYPE	2996	genome.wustl.edu	37	4	144826643	144826643	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002102.3	-1	reviewed	p.I6	0.000	130	0%	73	17.8%	0	-	-	-	-	NULL
HHIP	64399	genome.wustl.edu	37	4	145640093	145640093	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022475.1	+1	reviewed	p.I582S	0.998	197	0%	171	33.3%	2	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_Soluble quinoprotein glucose dehydrogenase
OTUD4	54726	genome.wustl.edu	37	4	146073706	146073706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102653.1	-1	reviewed	p.E254*	1.000	119	0%	74	24.3%	2	0%	-	-	-	NULL
OTUD4	54726	genome.wustl.edu	37	4	146092862	146092862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102653.1	-1	reviewed	p.G20E	0.998	162	0%	108	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OTU,superfamily_SSF54001
ZNF827	152485	genome.wustl.edu	37	4	146823704	146823704	+	Missense_Mutation	SNP	C	C	T	rs183753225	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178835.3	-1	validated	p.R236Q	1.000	140	0%	119	33.6%	0	-	possibly_damaging(0.79)	deleterious(0.01)	deleterious(0.702)	NULL
POU4F2	5458	genome.wustl.edu	37	4	147561700	147561700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004575.2	+1	validated	p.E324K	1.000	190	0%	149	29.5%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains
TTC29	83894	genome.wustl.edu	37	4	147724748	147724748	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031956.2	-1	validated	p.K397N	0.830	37	0%	33	24.2%	1	100%	possibly_damaging(0.937)	tolerated(0.06)	deleterious(0.706)	NULL
EDNRA	1909	genome.wustl.edu	37	4	148441127	148441127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001957.3	+1	reviewed	p.D182G	1.000	163	0%	171	31.6%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
PRMT10	90826	genome.wustl.edu	37	4	148594133	148594133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138364.2	-1	provisional	p.E240D	0.972	194	0%	181	33.7%	4	25%	benign(0.004)	tolerated(0.55)	neutral(0.007)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ARHGAP10	79658	genome.wustl.edu	37	4	148796182	148796182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024605.3	+1	validated	p.R238Q	1.000	342	0%	307	35.8%	3	33.3%	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	NULL
NR3C2	4306	genome.wustl.edu	37	4	149075942	149075942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000901.4	-1	reviewed	p.T709A	0.131	55	0%	67	29.9%	0	-	possibly_damaging(0.94)	tolerated(0.5)	neutral(0.395)	NULL
NR3C2	4306	genome.wustl.edu	37	4	149115952	149115952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000901.4	-1	reviewed	p.K653N	1.000	331	0.3%	260	28.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_SSF57716
NR3C2	4306	genome.wustl.edu	37	4	149115956	149115956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000901.4	-1	reviewed	p.R652Q	1.000	325	0%	253	35.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_SSF57716
NR3C2	4306	genome.wustl.edu	37	4	149356668	149356668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000901.4	-1	reviewed	p.P449S	1.000	120	0%	153	26.1%	0	-	benign(0.248)	tolerated(0.11)	neutral(0.297)	NULL
DCLK2	166614	genome.wustl.edu	37	4	151124990	151124990	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040260.2	+1	validated	p.T335	0.988	212	0%	186	33.3%	1	100%	-	-	-	NULL
DCLK2	166614	genome.wustl.edu	37	4	151153862	151153862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040260.2	+1	validated	p.S483L	1.000	327	0%	342	33.3%	0	-	probably_damaging(0.957)	tolerated(0.05)	deleterious(0.746)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DCLK2	166614	genome.wustl.edu	37	4	151153895	151153895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040260.2	+1	validated	p.A494V	1.000	345	0%	358	30.4%	2	0%	benign(0.001)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DCLK2	166614	genome.wustl.edu	37	4	151153957	151153957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040260.2	+1	validated	p.D515N	1.000	324	0%	365	30.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRBA	987	genome.wustl.edu	37	4	151223907	151223907	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000509835	-1	known	p.S1282L	0.058	152	0%	158	25.9%	34	44.1%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
LRBA	987	genome.wustl.edu	37	4	151509256	151509256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006726.2	-1	validated	p.E2103K	1.000	401	0%	365	39.5%	22	18.1%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_PH domain-like
LRBA	987	genome.wustl.edu	37	4	151518245	151518245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006726.2	-1	validated	p.E2023D	0.000	147	0%	87	23%	0	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_DUF1088
LRBA	987	genome.wustl.edu	37	4	151682992	151682992	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000509835	-1	known	p.K516*	1.000	210	0%	256	32%	7	85.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LRBA	987	genome.wustl.edu	37	4	151773336	151773336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006726.2	-1	validated	p.D1176Y	0.996	319	0%	334	29.6%	2	0%	possibly_damaging(0.862)	deleterious(0)	deleterious(0.778)	superfamily_ARM repeat
LRBA	987	genome.wustl.edu	37	4	151818961	151818961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006726.2	-1	validated	p.R645Q	1.000	76	0%	58	27.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
SH3D19	152503	genome.wustl.edu	37	4	152054264	152054264	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009555.3	-1	validated	p.R614*	0.966	177	0%	173	22%	4	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
FBXW7	55294	genome.wustl.edu	37	4	153251901	153251901	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033632.2	-1	reviewed	p.E369*	1.000	320	0%	347	29.7%	2	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_F-box domain
FBXW7	55294	genome.wustl.edu	37	4	153268137	153268137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033632.2	-1	reviewed	p.R224Q	1.000	185	0%	150	30%	1	0%	benign(0.377)	tolerated(0.36)	neutral(0.140)	superfamily_WD40 repeat-like
TMEM154	201799	genome.wustl.edu	37	4	153564291	153564291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152680.1	-1	provisional	p.E143K	1.000	162	0%	170	27.6%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TIGD4	201798	genome.wustl.edu	37	4	153691144	153691144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145720.2	-1	reviewed	p.F338C	1.000	204	0%	207	39.1%	0	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_DDE
KIAA0922	23240	genome.wustl.edu	37	4	154555414	154555414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015196.3	+1	validated	p.Y1466H	1.000	147	0%	120	35.8%	10	90%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
TLR2	7097	genome.wustl.edu	37	4	154624564	154624564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003264.3	+1	reviewed	p.D169Y	0.990	205	0%	198	28.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52058
TLR2	7097	genome.wustl.edu	37	4	154625500	154625500	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003264.3	+1	reviewed	p.E481*	1.000	231	0%	201	26.9%	4	0%	-	-	-	HMMSmart_LRR_TYP,superfamily_SSF52058
TLR2	7097	genome.wustl.edu	37	4	154626024	154626024	+	Silent	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003264.3	+1	reviewed	p.V655	1.000	144	0.7%	128	33.6%	7	0%	-	-	-	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
DCHS2	54798	genome.wustl.edu	37	4	155155848	155155848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017639.3	-1	validated	p.S2864Y	0.017	151	0%	185	27.6%	0	-	possibly_damaging(0.664)	tolerated(0.65)	neutral(0.238)	NULL
DCHS2	54798	genome.wustl.edu	37	4	155160343	155160343	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017639.3	-1	validated	p.F2036V	0.877	164	0%	138	30.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155160361	155160361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017639.3	-1	validated	p.L2030I	0.018	162	0%	146	29.5%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155225830	155225830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017639.3	-1	validated	p.H1411N	0.161	231	0%	172	23.3%	0	-	benign(0.291)	tolerated(0.18)	neutral(0.145)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155242138	155242138	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017639.3	-1	validated	p.T1016	0.000	371	0.5%	344	28.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155253787	155253787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017639.3	-1	validated	p.F692L	0.994	158	0%	106	33%	0	-	probably_damaging(0.996)	tolerated(0.34)	deleterious(0.485)	superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155254132	155254132	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017639.3	-1	validated	p.R577	0.001	77	0%	62	33.9%	0	-	-	-	-	HMMSmart_SM00112
DCHS2	54798	genome.wustl.edu	37	4	155254405	155254405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017639.3	-1	validated	p.E486D	0.003	63	0%	56	35.7%	0	-	possibly_damaging(0.812)	tolerated(0.55)	neutral(0.312)	HMMPfam_Cadherin,superfamily_Cadherin-like
PLRG1	5356	genome.wustl.edu	37	4	155459153	155459153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002669.2	-1	provisional	p.T420M	1.000	210	0%	140	28.6%	91	45%	possibly_damaging(0.7)	deleterious(0)	deleterious(0.696)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FGA	2243	genome.wustl.edu	37	4	155505789	155505789	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000508.3	-1	reviewed	p.F696	1.000	245	0%	216	38%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155509955	155509955	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000508.3	-1	reviewed	p.S118	0.000	225	0%	204	28.4%	0	-	-	-	-	HMMPfam_Fib_alpha
NPY2R	4887	genome.wustl.edu	37	4	156135571	156135571	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000910.2	+1	provisional	p.I160	1.000	127	0%	134	29.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GUCY1A3	2982	genome.wustl.edu	37	4	156625096	156625096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000856.4	+1	validated	p.N90H	0.998	203	0%	151	31.8%	5	0%	benign(0.003)	tolerated(0.38)	neutral(0.018)	NULL
ASIC5	51802	genome.wustl.edu	37	4	156764950	156764950	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017419.2	-1	reviewed	p.F248	1.000	116	0%	107	27.1%	0	-	-	-	-	HMMPfam_ASC
GLRB	2743	genome.wustl.edu	37	4	158091671	158091671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000824.4	+1	reviewed	p.D429Y	1.000	216	0%	147	32.7%	20	55%	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GRIA2	2891	genome.wustl.edu	37	4	158233874	158233874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000826.3	+1	reviewed	p.K171N	1.000	111	0%	97	26.8%	1	0%	benign(0.003)	tolerated(0.66)	neutral(0.003)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA2	2891	genome.wustl.edu	37	4	158284049	158284049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000826.3	+1	reviewed	p.F835L	1.000	175	0%	150	24%	1	0%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
RXFP1	59350	genome.wustl.edu	37	4	159520504	159520504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021634.2	+1	provisional	p.L105I	0.017	91	0%	82	19.5%	2	100%	benign(0)	tolerated(0.45)	neutral(0.012)	superfamily_L domain-like
RXFP1	59350	genome.wustl.edu	37	4	159520571	159520571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021634.2	+1	provisional	p.N127S	1.000	79	0%	61	21.3%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMSmart_SM00369,superfamily_L domain-like
RXFP1	59350	genome.wustl.edu	37	4	159566149	159566149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021634.2	+1	provisional	p.L402I	1.000	98	0%	80	28.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
RXFP1	59350	genome.wustl.edu	37	4	159566282	159566282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021634.2	+1	provisional	p.S446F	1.000	112	0%	79	27.8%	0	-	probably_damaging(0.953)	tolerated(0.07)	deleterious(0.716)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RXFP1	59350	genome.wustl.edu	37	4	159567980	159567980	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021634.2	+1	provisional	p.I461	0.922	242	0.4%	189	25.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RAPGEF2	9693	genome.wustl.edu	37	4	160251140	160251140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014247.2	+1	validated	p.R266I	1.000	208	0%	203	31.5%	6	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Ras_GEF
NPY5R	4889	genome.wustl.edu	37	4	164272178	164272178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006174.2	+1	provisional	p.E251D	0.999	225	0%	160	31.9%	0	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	HMMPfam_7tm_1,superfamily_SSF81321
TKTL2	84076	genome.wustl.edu	37	4	164393512	164393512	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032136.4	-1	validated	p.E459*	1.000	131	0%	104	29.8%	0	-	-	-	-	HMMPfam_Transket_pyr,superfamily_SSF52518
TKTL2	84076	genome.wustl.edu	37	4	164393963	164393963	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032136.4	-1	validated	p.T308	0.718	232	0%	189	27.5%	0	-	-	-	-	superfamily_SSF52518
TKTL2	84076	genome.wustl.edu	37	4	164394651	164394651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032136.4	-1	validated	p.A79V	1.000	49	0%	35	20%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Transketolase_N,superfamily_SSF52518
MARCH1	55016	genome.wustl.edu	37	4	164506976	164506976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017923.3	-1	validated	p.K99N	1.000	160	0%	133	30.8%	1	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_RINGv,HMMPfam_zf-C3HC4
TRIM75	391714	genome.wustl.edu	37	4	165981169	165981169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000322402	+1	known	p.K290N	0.000	154	0%	181	27.1%	0	-	-	-	-	NULL
TLL1	7092	genome.wustl.edu	37	4	166910536	166910536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012464.3	+1	reviewed	p.V58A	1.000	144	0%	109	29.4%	0	-	benign(0.001)	tolerated(1)	-	NULL
TLL1	7092	genome.wustl.edu	37	4	166964494	166964494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012464.3	+1	reviewed	p.R483C	1.000	505	0.2%	377	30%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TLL1	7092	genome.wustl.edu	37	4	166987008	166987008	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012464.3	+1	reviewed	p.F727L	0.996	193	0%	165	30.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TLL1	7092	genome.wustl.edu	37	4	167020465	167020465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012464.3	+1	reviewed	p.R898I	1.000	281	0.4%	232	37.5%	0	-	benign(0.408)	deleterious(0.02)	deleterious(0.515)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DDX60	55601	genome.wustl.edu	37	4	169172230	169172230	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017631.5	-1	validated	p.K1245Q	0.004	213	0%	134	27.6%	2	0%	benign(0.115)	tolerated(0.23)	neutral(0.051)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60	55601	genome.wustl.edu	37	4	169197292	169197292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017631.5	-1	validated	p.M673I	1.000	147	0%	147	31.3%	2	0%	benign(0.345)	tolerated(0.35)	neutral(0.130)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60	55601	genome.wustl.edu	37	4	169213011	169213011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017631.5	-1	validated	p.K310T	0.123	131	0%	113	31.9%	0	-	benign(0.389)	deleterious(0.01)	deleterious(0.530)	NULL
DDX60L	91351	genome.wustl.edu	37	4	169315763	169315763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000514580	-1	known	p.G109*	0.022	180	0.6%	111	42.3%	1	0%	probably_damaging(1)	tolerated(0.64)	deleterious(0.503)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60L	91351	genome.wustl.edu	37	4	169343007	169343007	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012967.1	-1	validated	p.P766	0.026	299	0%	277	27.1%	1	0%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60L	91351	genome.wustl.edu	37	4	169343724	169343724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012967.1	-1	validated	p.R732I	0.982	94	0%	79	36.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
NEK1	4750	genome.wustl.edu	37	4	170345801	170345801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012224.1	-1	validated	p.A1014E	0.989	175	0%	181	37%	2	50%	benign(0.08)	deleterious(0)	neutral(0.450)	NULL
C4orf27	54969	genome.wustl.edu	37	4	170652935	170652935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017867.2	-1	validated	p.F277V	0.904	249	0%	167	13.8%	30	13.3%	possibly_damaging(0.649)	tolerated(0.23)	neutral(0.270)	HMMPfam_DUF2228
GALNTL6	442117	genome.wustl.edu	37	4	173804049	173804049	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001034845.2	+1	validated	p.I344	1.000	319	0.3%	215	26.5%	0	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
FBXO8	26269	genome.wustl.edu	37	4	175158655	175158655	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012180.2	-1	reviewed	p.R290*	1.000	107	0%	139	32.4%	29	44.8%	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
ADAM29	11086	genome.wustl.edu	37	4	175897114	175897114	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130703.1	+1	reviewed	p.E146	0.998	222	0%	200	31.5%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
ADAM29	11086	genome.wustl.edu	37	4	175897858	175897858	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130703.1	+1	reviewed	p.I394	0.000	258	0%	241	30.7%	0	-	-	-	-	NULL
ADAM29	11086	genome.wustl.edu	37	4	175898287	175898287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130703.1	+1	reviewed	p.K537N	0.000	279	0%	299	30.1%	0	-	benign(0.009)	tolerated(0.52)	neutral(0.009)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM29	11086	genome.wustl.edu	37	4	175898314	175898314	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130703.1	+1	reviewed	p.I546	0.000	363	0%	382	33.5%	0	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM29	11086	genome.wustl.edu	37	4	175898495	175898495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130703.1	+1	reviewed	p.D607Y	0.005	406	0%	442	29.2%	0	-	benign(0.054)	tolerated(0.07)	neutral(0.323)	HMMSmart_SM00608
GPM6A	2823	genome.wustl.edu	37	4	176594958	176594958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005277.3	-1	validated	p.G87D	1.000	87	0%	71	22.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Myelin_PLP
WDR17	116966	genome.wustl.edu	37	4	177083278	177083278	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170710.4	+1	reviewed	p.R959*	0.457	99	0%	85	23.5%	0	-	-	-	-	NULL
ASB5	140458	genome.wustl.edu	37	4	177136848	177136848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080874.2	-1	reviewed	p.R298Q	1.000	79	0%	60	31.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SOCS_box
ASB5	140458	genome.wustl.edu	37	4	177146445	177146445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080874.2	-1	reviewed	p.R82C	1.000	264	0.4%	221	27.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NEIL3	55247	genome.wustl.edu	37	4	178274465	178274465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018248.2	+1	validated	p.S348L	0.970	186	0%	145	10.3%	0	-	benign(0.01)	tolerated(0.06)	neutral(0.323)	NULL
ODZ3	55714	genome.wustl.edu	37	4	183245337	183245337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080477.1	+1	provisional	p.S55L	1.000	115	0%	94	22.3%	0	-	probably_damaging(0.978)	tolerated(0.12)	deleterious(0.681)	HMMPfam_Ten_N
ODZ3	55714	genome.wustl.edu	37	4	183594308	183594308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080477.1	+1	provisional	p.S421Y	1.000	40	0%	31	29%	0	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
ODZ3	55714	genome.wustl.edu	37	4	183652104	183652104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080477.1	+1	provisional	p.H927N	1.000	73	0%	70	37.1%	0	-	benign(0.149)	deleterious(0.01)	neutral(0.419)	superfamily_CarboxypepD_reg,superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183659619	183659619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080477.1	+1	provisional	p.L1101M	0.756	260	0%	254	11.8%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183713469	183713469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080477.1	+1	provisional	p.E1882K	1.000	149	0.7%	104	31.7%	2	0%	possibly_damaging(0.62)	deleterious(0.01)	deleterious(0.622)	NULL
DCTD	1635	genome.wustl.edu	37	4	183836130	183836130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012732.1	-1	reviewed	p.V75M	0.154	64	1.6%	57	22.8%	57	42.1%	benign(0.011)	deleterious(0.04)	neutral(0.349)	HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine_deaminase-like
WWC2	80014	genome.wustl.edu	37	4	184201998	184201998	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024949.5	+1	validated	p.E878*	1.000	19	0%	19	36.8%	2	0%	-	-	-	NULL
CDKN2AIP	55602	genome.wustl.edu	37	4	184367666	184367666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017632.2	+1	provisional	p.S277P	0.167	63	0%	55	38.2%	8	37.5%	unknown(0)	deleterious(0)	-	NULL
CCDC111	201973	genome.wustl.edu	37	4	185593505	185593505	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152683.2	+1	validated	p.S245	0.000	91	0%	75	29.3%	1	100%	-	-	-	NULL
MLF1IP	79682	genome.wustl.edu	37	4	185618876	185618876	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024629.3	-1	validated	p.Y356*	0.022	57	0%	51	27.5%	24	8.3%	-	-	-	NULL
ACSL1	2180	genome.wustl.edu	37	4	185687835	185687835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001995.2	-1	reviewed	p.R402C	0.996	76	0%	78	41%	6	66.6%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	superfamily_Acetyl-CoA synthetase-like
ACSL1	2180	genome.wustl.edu	37	4	185724531	185724531	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001995.2	-1	reviewed	p.T46	0.994	32	0%	31	19.4%	3	0%	-	-	-	NULL
HELT	391723	genome.wustl.edu	37	4	185941432	185941432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029887.1	+1	provisional	p.L164I	1.000	96	0%	77	32.5%	0	-	probably_damaging(0.991)	tolerated(0.35)	neutral(0.465)	superfamily_HLH helix-loop-helix DNA-binding domain
SNX25	83891	genome.wustl.edu	37	4	186253873	186253873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031953.2	+1	validated	p.A461V	1.000	197	0%	149	38.3%	5	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SNX25	83891	genome.wustl.edu	37	4	186267715	186267715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031953.2	+1	validated	p.Q574K	1.000	190	0%	164	25.6%	1	0%	benign(0.053)	deleterious(0.04)	neutral(0.352)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
LRP2BP	55805	genome.wustl.edu	37	4	186295589	186295589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018409.3	-1	validated	p.K119N	0.998	194	0%	172	34.3%	0	-	probably_damaging(0.954)	deleterious(0.04)	deleterious(0.746)	HMMSmart_SM00671,superfamily_HCP-like
UFSP2	55325	genome.wustl.edu	37	4	186337022	186337022	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018359.3	-1	validated	e5-1	1.000	122	0%	163	26.4%	0	-	-	-	-	-
CCDC110	256309	genome.wustl.edu	37	4	186379328	186379328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152775.3	-1	validated	p.E805K	0.170	118	0%	97	38.1%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
CCDC110	256309	genome.wustl.edu	37	4	186380127	186380127	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152775.3	-1	validated	p.Q538H	0.953	144	0%	147	29.3%	0	-	benign(0.107)	deleterious(0.02)	neutral(0.392)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186545037	186545037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021069.4	-1	reviewed	p.E512K	0.998	106	0%	101	35.6%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
TLR3	7098	genome.wustl.edu	37	4	187004932	187004932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003265.2	+1	reviewed	p.D698N	1.000	427	0%	456	28.9%	2	0%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
TLR3	7098	genome.wustl.edu	37	4	187005266	187005266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003265.2	+1	reviewed	p.R809I	0.091	155	0%	136	25%	2	0%	possibly_damaging(0.649)	tolerated(0.07)	deleterious(0.547)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
CYP4V2	285440	genome.wustl.edu	37	4	187130246	187130246	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207352.3	+1	reviewed	e10-1	1.000	291	0%	328	28%	0	-	-	-	-	-
KLKB1	3818	genome.wustl.edu	37	4	187175830	187175830	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000892.3	+1	reviewed	p.E468*	0.859	139	0%	86	33.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
F11	2160	genome.wustl.edu	37	4	187201533	187201533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000128.3	+1	reviewed	p.E341G	0.001	264	0%	252	13.5%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00223,PatternScan_APPLE,HMMPfam_PAN_1
FAT1	2195	genome.wustl.edu	37	4	187524656	187524656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.R3675M	0.938	61	0%	28	17.9%	3	0%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	superfamily_Concanavalin A-like lectins/glucanases
FAT1	2195	genome.wustl.edu	37	4	187524992	187524992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.V3563A	1.000	71	0%	54	35.2%	10	0%	probably_damaging(0.979)	tolerated(0.14)	deleterious(0.671)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187525724	187525724	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.N3452I	1.000	36	0%	35	37.1%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187532760	187532760	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.T3211	0.900	135	0%	81	27.2%	4	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187539937	187539937	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.Y2601	1.000	85	0%	59	20.3%	2	0%	-	-	-	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187542848	187542848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.A1631V	0.180	92	0%	86	26.7%	1	0%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187549725	187549725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.R1506C	1.000	121	0%	106	25.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187628499	187628499	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.F828C	1.000	233	0%	205	28.8%	0	-	possibly_damaging(0.778)	tolerated(0.12)	deleterious(0.551)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187630552	187630552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005245.3	-1	reviewed	p.D144Y	1.000	262	0%	221	24.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,superfamily_Cadherin-like
ZFP42	132625	genome.wustl.edu	37	4	188924653	188924653	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174900.3	+1	validated	p.K231T	0.990	174	0%	159	32.1%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PLEKHG4B	153478	genome.wustl.edu	37	5	155059	155059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052909.3	+1	validated	p.D332N	0.026	62	0%	64	31.2%	16	50%	probably_damaging(0.995)	tolerated(0.48)	neutral(0.468)	NULL
ZDHHC11B	653082	genome.wustl.edu	37	5	733876	733876	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_926053.4	-1	model	p.S338	0.000	128	0%	114	16.7%	0	-	-	-	-	NULL
ZDHHC11B	653082	genome.wustl.edu	37	5	766978	766978	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_926053.4	-1	model	p.N19	0.000	47	0%	31	12.9%	0	-	-	-	-	NULL
ZDHHC11	79844	genome.wustl.edu	37	5	819650	819650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024786.2	-1	validated	p.S379L	0.001	136	0%	69	29%	0	-	benign(0.119)	-	-	NULL
ZDHHC11	79844	genome.wustl.edu	37	5	825328	825328	+	Nonsense_Mutation	SNP	A	A	C	rs66846455		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024786.2	-1	validated	p.L325*	0.000	99	0%	99	26.3%	0	-	-	-	-	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5235148	5235148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139056.2	+1	reviewed	p.F624L	1.000	115	0.9%	83	24.1%	0	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,PatternScan_CARBAMOYLTRANSFERASE
KIAA0947	23379	genome.wustl.edu	37	5	5464162	5464162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015325.1	+1	validated	p.A1572V	0.000	115	0.9%	129	34.9%	10	30%	benign(0.002)	tolerated(0.21)	neutral(0.044)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5464789	5464789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015325.1	+1	validated	p.A1781D	0.002	52	1.9%	57	38.6%	10	20%	possibly_damaging(0.849)	tolerated(0.1)	deleterious(0.613)	NULL
NSUN2	54888	genome.wustl.edu	37	5	6620243	6620243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017755.4	-1	validated	p.R264Q	1.000	118	0%	168	21.4%	20	80%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF53335
NSUN2	54888	genome.wustl.edu	37	5	6625745	6625745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017755.4	-1	validated	p.R133*	1.000	88	0%	74	24.3%	21	4.7%	-	-	-	superfamily_SSF53335
ADCY2	108	genome.wustl.edu	37	5	7520874	7520874	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020546.2	+1	reviewed	p.I144	1.000	182	0%	133	27.8%	0	-	-	-	-	NULL
ADCY2	108	genome.wustl.edu	37	5	7724687	7724687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020546.2	+1	reviewed	p.R578I	1.000	178	0%	126	33.3%	0	-	possibly_damaging(0.463)	tolerated(0.08)	neutral(0.452)	HMMPfam_DUF1053
ADCY2	108	genome.wustl.edu	37	5	7727351	7727351	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020546.2	+1	reviewed	p.I616M	0.148	134	0%	114	25.4%	0	-	benign(0.012)	deleterious(0.02)	neutral(0.384)	NULL
FASTKD3	79072	genome.wustl.edu	37	5	7867578	7867578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024091.2	-1	validated	p.R207C	0.631	138	0%	121	32.2%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTRR	4552	genome.wustl.edu	37	5	7895872	7895872	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024010.2	+1	reviewed	p.N555T	0.000	363	0%	249	23.3%	9	11.1%	benign(0.058)	tolerated(0.26)	neutral(0.038)	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9108298	9108298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003966.2	-1	reviewed	p.R676H	1.000	57	0%	27	22.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SEMA5A	9037	genome.wustl.edu	37	5	9190430	9190430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003966.2	-1	reviewed	p.D408N	1.000	41	0%	47	14.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
TAS2R1	50834	genome.wustl.edu	37	5	9629621	9629621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019599.2	-1	reviewed	p.Q175P	0.000	214	0%	188	31.4%	0	-	benign(0.027)	tolerated(0.12)	neutral(0.262)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R1	50834	genome.wustl.edu	37	5	9629945	9629945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019599.2	-1	reviewed	p.V67A	0.001	143	0%	142	19%	0	-	benign(0.055)	deleterious(0.03)	neutral(0.368)	HMMPfam_TAS2R,superfamily_SSF81321
CCT5	22948	genome.wustl.edu	37	5	10250474	10250474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012073.3	+1	reviewed	p.A8T	1.000	15	0%	13	46.2%	123	34.9%	benign(0.002)	deleterious(0.05)	neutral(0.345)	NULL
CCT5	22948	genome.wustl.edu	37	5	10256222	10256222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012073.3	+1	reviewed	p.E163K	1.000	63	0%	52	34.6%	344	40.9%	benign(0.011)	deleterious(0.02)	neutral(0.384)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
DNAH5	1767	genome.wustl.edu	37	5	13717498	13717498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001369.2	-1	reviewed	p.E4211K	1.000	88	0%	71	38%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13727761	13727761	+	Missense_Mutation	SNP	G	G	A	rs191057833	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001369.2	-1	reviewed	p.S3963L	1.000	184	0%	122	23%	1	100%	benign(0.01)	tolerated(0.26)	neutral(0.035)	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13752336	13752336	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001369.2	-1	reviewed	p.R3645	0.991	271	0%	263	29.3%	0	-	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13776654	13776654	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001369.2	-1	reviewed	p.S3089	0.036	304	0%	315	34.3%	0	-	-	-	-	superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13793818	13793818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001369.2	-1	reviewed	p.R2677Q	1.000	179	0%	180	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13841916	13841916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001369.2	-1	reviewed	p.N1790T	1.000	240	0%	184	14.1%	2	0%	benign(0.002)	tolerated(0.64)	neutral(0.003)	HMMPfam_DHC_N2
TRIO	7204	genome.wustl.edu	37	5	14359632	14359632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007118.2	+1	validated	p.A795T	1.000	65	0%	53	26.4%	1	0%	unknown(0)	tolerated(0.35)	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14389400	14389400	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007118.2	+1	validated	p.T1317	0.999	57	0%	79	29.1%	7	42.8%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TRIO	7204	genome.wustl.edu	37	5	14399069	14399069	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007118.2	+1	validated	p.R1502*	1.000	238	0%	243	34.6%	9	11.1%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
LOC100287064	100287064	genome.wustl.edu	37	5	14653312	14653312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342492.1	+1	model	p.K79N	1.000	152	0%	131	32.1%	0	-	-	-	-	NULL
FAM134B	54463	genome.wustl.edu	37	5	16474907	16474907	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000510362	-1	known	p.K199R	0.396	324	0%	293	28.3%	1	0%	-	-	-	NULL
MYO10	4651	genome.wustl.edu	37	5	16668425	16668425	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012334.2	-1	validated	p.I2012	0.993	270	0%	184	29.9%	67	53.7%	-	-	-	NULL
MYO10	4651	genome.wustl.edu	37	5	16673971	16673971	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012334.2	-1	validated	p.E1664	1.000	67	0%	100	39%	46	41.3%	-	-	-	HMMPfam_MyTH4,HMMSmart_MyTH4
MYO10	4651	genome.wustl.edu	37	5	16818257	16818257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012334.2	-1	validated	p.S47I	1.000	34	0%	33	24.2%	16	50%	benign(0.285)	tolerated(0.21)	neutral(0.132)	superfamily_SSF52540
BASP1	10409	genome.wustl.edu	37	5	17275336	17275336	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006317.3	+1	reviewed	p.K4T	1.000	128	0%	101	24.8%	34	47%	unknown(0)	deleterious(0)	-	HMMPfam_BASP1
BASP1	10409	genome.wustl.edu	37	5	17275538	17275538	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006317.3	+1	reviewed	p.G71	0.971	17	0%	33	33.3%	25	32%	-	-	-	HMMPfam_BASP1
CDH18	1016	genome.wustl.edu	37	5	19571845	19571845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004934.3	-1	reviewed	p.D366Y	1.000	209	0%	149	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CA,superfamily_Cadherin
CDH12	1010	genome.wustl.edu	37	5	21751878	21751878	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004061.3	-1	reviewed	p.E785*	1.000	299	0%	248	29.8%	0	-	-	-	-	HMMPfam_Cadherin_C
PRDM9	56979	genome.wustl.edu	37	5	23510115	23510115	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020227.2	+1	provisional	p.E94*	1.000	125	0%	91	28.6%	0	-	-	-	-	NULL
PRDM9	56979	genome.wustl.edu	37	5	23526541	23526541	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020227.2	+1	provisional	p.N448	0.001	201	0%	155	24.5%	0	-	-	-	-	NULL
PRDM9	56979	genome.wustl.edu	37	5	23526610	23526610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020227.2	+1	provisional	p.E471D	0.000	190	0%	148	32.4%	0	-	benign(0.105)	tolerated(0.34)	neutral(0.031)	NULL
CDH10	1008	genome.wustl.edu	37	5	24537528	24537528	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006727.2	-1	reviewed	p.E163*	1.000	194	0%	125	32.8%	0	-	-	-	-	superfamily_Cadherin
CDH10	1008	genome.wustl.edu	37	5	24537668	24537668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006727.2	-1	reviewed	p.R116Q	1.000	145	0%	89	36%	0	-	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
LOC729862	729862	genome.wustl.edu	37	5	28927641	28927641	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_040872.2	+1	model	NULL	0.103	7	0.000	6	0.667	0	-	-	-	-	-
CDH6	1004	genome.wustl.edu	37	5	31323104	31323104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004932.2	+1	reviewed	p.L688V	0.368	154	0%	144	27.1%	3	0%	possibly_damaging(0.532)	tolerated(0.52)	neutral(0.189)	HMMPfam_Cadherin_C
DROSHA	29102	genome.wustl.edu	37	5	31493374	31493374	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013235.4	-1	validated	p.Y594	1.000	31	0%	28	17.9%	11	45.4%	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	31799548	31799548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178140.2	+1	reviewed	p.E65K	0.856	116	0%	141	27.7%	0	-	benign(0.026)	deleterious(0)	neutral(0.446)	superfamily_PDZ domain-like
PDZD2	23037	genome.wustl.edu	37	5	32108234	32108234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178140.2	+1	reviewed	p.S2838Y	0.000	150	0%	118	26.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GOLPH3	64083	genome.wustl.edu	37	5	32126465	32126465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022130.3	-1	reviewed	p.E250D	1.000	197	0%	204	27.5%	76	39.4%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	HMMPfam_GPP34
MTMR12	54545	genome.wustl.edu	37	5	32230300	32230300	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040446.1	-1	reviewed	p.R610*	0.344	183	0%	176	25.6%	24	62.5%	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
ZFR	51663	genome.wustl.edu	37	5	32397417	32397417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016107.3	-1	validated	p.R581W	1.000	160	0%	125	28.8%	19	52.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ADAMTS12	81792	genome.wustl.edu	37	5	33577232	33577232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030955.2	-1	reviewed	p.R967C	1.000	442	0%	337	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS12	81792	genome.wustl.edu	37	5	33658334	33658334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030955.2	-1	reviewed	p.S382L	0.971	232	0%	196	31.6%	2	0%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS12	81792	genome.wustl.edu	37	5	33662055	33662055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030955.2	-1	reviewed	p.P336S	1.000	218	0%	158	29.7%	0	-	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
SLC45A2	51151	genome.wustl.edu	37	5	33963819	33963819	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016180.3	-1	reviewed	p.K289Q	0.005	206	0%	171	28.7%	0	-	probably_damaging(0.983)	tolerated(0.32)	neutral(0.453)	superfamily_MFS general substrate transporter
RAI14	26064	genome.wustl.edu	37	5	34796116	34796116	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145525.1	+1	validated	p.T83	1.000	246	0%	276	29.3%	14	64.2%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
DNAJC21	134218	genome.wustl.edu	37	5	34937595	34937595	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194283.3	+1	validated	p.E201	0.995	83	0%	77	33.8%	23	47.8%	-	-	-	NULL
AGXT2	64902	genome.wustl.edu	37	5	35014122	35014122	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031900.3	-1	reviewed	p.F356V	1.000	369	0%	425	31.8%	0	-	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
SPEF2	79925	genome.wustl.edu	37	5	35763653	35763653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024867.3	+1	validated	p.S1217Y	1.000	176	0%	164	36%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SPEF2	79925	genome.wustl.edu	37	5	35814649	35814649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024867.3	+1	validated	p.K1821N	1.000	302	0%	222	30.6%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
CAPSL	133690	genome.wustl.edu	37	5	35909957	35909957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000514524	-1	known	p.R179I	0.000	306	0%	269	36.4%	0	-	benign(0.138)	deleterious(0.02)	neutral(0.395)	NULL
UGT3A1	133688	genome.wustl.edu	37	5	35966015	35966015	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152404.3	-1	validated	p.E106*	0.000	245	0%	251	34.7%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT3A1	133688	genome.wustl.edu	37	5	35991271	35991271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152404.3	-1	validated	p.K24N	0.998	373	0%	343	14%	0	-	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT3A2	167127	genome.wustl.edu	37	5	36049146	36049146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174914.3	-1	validated	p.T230A	0.635	437	0%	370	33%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_UDPGT,superfamily_SSF53756
NADKD1	133686	genome.wustl.edu	37	5	36195297	36195297	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000502355	-1	known	p.R121Q	0.617	152	0%	104	32.7%	12	50%	-	-	-	NULL
NIPBL	25836	genome.wustl.edu	37	5	36975990	36975990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133433.3	+1	reviewed	p.K327N	1.000	215	0%	227	36.1%	5	80%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37014831	37014831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133433.3	+1	reviewed	p.R1536Q	1.000	176	0%	138	24.6%	16	62.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_ARM repeat
C5orf42	65250	genome.wustl.edu	37	5	37121861	37121861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023073.3	-1	predicted	p.R1859C	0.184	190	0%	217	32.7%	4	25%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37164388	37164388	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023073.3	-1	predicted	p.F1405	0.018	120	0%	123	30.1%	3	0%	-	-	-	NULL
EGFLAM	133584	genome.wustl.edu	37	5	38350642	38350642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152403.2	+1	validated	p.R111C	0.637	212	0%	213	30%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
EGFLAM	133584	genome.wustl.edu	37	5	38352399	38352399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152403.2	+1	validated	p.A171T	0.987	353	0.6%	276	30.4%	1	0%	benign(0.15)	deleterious(0.01)	neutral(0.419)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
EGFLAM	133584	genome.wustl.edu	37	5	38370532	38370532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152403.2	+1	validated	p.R227H	0.996	76	0%	69	20.3%	2	0%	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	HMMPfam_fn3,superfamily_FN_III-like
LIFR	3977	genome.wustl.edu	37	5	38485952	38485952	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127671.1	-1	reviewed	p.E822	1.000	141	0%	110	36.4%	0	-	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38493808	38493808	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127671.1	-1	reviewed	p.C655	0.277	229	0%	203	28.6%	0	-	-	-	-	PatternScan_HEMATOPO_REC_L_F2,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38502811	38502811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127671.1	-1	reviewed	p.R510C	1.000	85	0%	76	18.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38506605	38506605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127671.1	-1	reviewed	p.S374I	1.000	161	0%	153	15%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00060,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38510602	38510602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127671.1	-1	reviewed	p.E319K	0.001	160	0%	174	29.3%	0	-	possibly_damaging(0.597)	tolerated(0.57)	neutral(0.212)	NULL
RICTOR	253260	genome.wustl.edu	37	5	38949526	38949526	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000296782	-1	known	p.I1380	1.000	56	0%	37	43.2%	0	-	-	-	-	superfamily_ARM-type_fold
FYB	2533	genome.wustl.edu	37	5	39202524	39202524	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001465.3	-1	validated	p.F180C	0.973	225	0%	215	29.8%	4	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
FYB	2533	genome.wustl.edu	37	5	39203033	39203033	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001465.3	-1	validated	p.P10	0.016	213	0%	157	32.5%	3	0%	-	-	-	NULL
C9	735	genome.wustl.edu	37	5	39306721	39306721	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001737.3	-1	reviewed	p.K472Q	0.597	286	0%	199	29.6%	0	-	possibly_damaging(0.837)	tolerated(0.07)	deleterious(0.639)	HMMPfam_MACPF,HMMSmart_MACPF
C9	735	genome.wustl.edu	37	5	39306823	39306823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001737.3	-1	reviewed	p.F438V	0.000	321	0%	224	31.2%	0	-	benign(0)	tolerated(0.94)	-	HMMPfam_MACPF,HMMSmart_MACPF
DAB2	1601	genome.wustl.edu	37	5	39383033	39383033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001343.2	-1	validated	p.F343S	1.000	178	0%	174	28.2%	12	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
DAB2	1601	genome.wustl.edu	37	5	39383265	39383265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001343.2	-1	validated	p.P266S	1.000	286	0%	240	11.3%	17	0%	probably_damaging(1)	tolerated(0.94)	deleterious(0.500)	NULL
DAB2	1601	genome.wustl.edu	37	5	39383332	39383332	+	Silent	SNP	G	G	A	rs145830813	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001343.2	-1	validated	p.I243	1.000	254	0.4%	221	30.3%	19	0%	-	-	-	NULL
DAB2	1601	genome.wustl.edu	37	5	39390600	39390600	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001343.2	-1	validated	p.Y136	0.318	114	0%	123	29.3%	6	0%	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
PTGER4	5734	genome.wustl.edu	37	5	40681577	40681577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000958.2	+1	reviewed	p.S161L	0.881	56	0%	55	20%	4	50%	benign(0.02)	tolerated(0.63)	neutral(0.005)	HMMPfam_7tm_1,superfamily_SSF81321
CARD6	84674	genome.wustl.edu	37	5	40853287	40853287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032587.3	+1	reviewed	p.R618I	0.000	370	0%	367	33.5%	0	-	probably_damaging(0.962)	tolerated(0.1)	deleterious(0.692)	NULL
C7	730	genome.wustl.edu	37	5	40945315	40945315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000587.2	+1	reviewed	p.D195Y	1.000	49	0%	36	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41015482	41015482	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173489.4	-1	validated	e29+1	1.000	123	0%	90	26.7%	0	-	-	-	-	-
HEATR7B2	133558	genome.wustl.edu	37	5	41019001	41019001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173489.4	-1	validated	p.D854A	1.000	174	0%	121	28.1%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41049454	41049454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173489.4	-1	validated	p.L477M	0.292	94	0%	78	33.3%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41057277	41057277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173489.4	-1	validated	p.C285G	1.000	92	0%	62	29%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	superfamily_ARM repeat
C6	729	genome.wustl.edu	37	5	41159289	41159289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000065.2	-1	reviewed	p.S584L	0.731	159	0%	147	34.7%	0	-	benign(0.389)	tolerated(0.69)	neutral(0.127)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
OXCT1	5019	genome.wustl.edu	37	5	41870407	41870407	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000436.3	-1	reviewed	p.R18	0.001	30	0%	17	35.3%	4	0%	-	-	-	NULL
NIM1	167359	genome.wustl.edu	37	5	43246014	43246014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153361.2	+1	provisional	p.T46M	1.000	142	0%	151	13.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NIM1	167359	genome.wustl.edu	37	5	43246106	43246106	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153361.2	+1	provisional	p.R77*	1.000	120	0%	137	35.8%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C5orf34	375444	genome.wustl.edu	37	5	43509282	43509282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000306862	-1	known	p.R54C	1.000	166	0%	121	34.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGF10	2255	genome.wustl.edu	37	5	44388712	44388712	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004465.1	-1	reviewed	p.L25	0.987	87	0%	90	27.8%	2	0%	-	-	-	NULL
MRPS30	10884	genome.wustl.edu	37	5	44811233	44811233	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016640.3	+1	reviewed	p.R242*	1.000	70	0%	101	19.8%	26	0%	-	-	-	HMMPfam_PDCD9
HCN1	348980	genome.wustl.edu	37	5	45396615	45396615	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021072.2	-1	validated	p.S403	0.726	69	0%	80	32.5%	0	-	-	-	-	superfamily_cNMP_binding,superfamily_SSF81324
EMB	133418	genome.wustl.edu	37	5	49698142	49698142	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198449.2	-1	reviewed	p.E297*	1.000	120	0%	99	11.1%	3	0%	-	-	-	NULL
ITGA1	3672	genome.wustl.edu	37	5	52206002	52206002	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181501.1	+1	reviewed	p.E537V	1.000	112	0%	98	21.4%	11	9%	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	HMMSmart_Int_alpha,superfamily_SSF69318
ITGA1	3672	genome.wustl.edu	37	5	52206140	52206140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181501.1	+1	reviewed	p.L583R	1.000	81	0%	69	34.8%	7	0%	probably_damaging(0.996)	tolerated(0.21)	deleterious(0.506)	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318
MOCS2	4338	genome.wustl.edu	37	5	52398001	52398001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004531.3	-1	reviewed	p.A51V	0.001	65	0%	65	27.7%	37	32.4%	benign(0.003)	tolerated(0.32)	neutral(0.024)	HMMPfam_MoaE,superfamily_Mb_biosynth_MoaE
ESM1	11082	genome.wustl.edu	37	5	54277939	54277939	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007036.4	-1	reviewed	p.E113*	0.589	113	0%	104	29.8%	9	0%	-	-	-	NULL
GZMK	3003	genome.wustl.edu	37	5	54327308	54327308	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002104.2	+1	reviewed	p.D160E	0.000	147	0%	132	31.8%	16	0%	benign(0)	tolerated(0.95)	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
GZMA	3001	genome.wustl.edu	37	5	54401343	54401343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006144.3	+1	reviewed	p.H38N	1.000	168	0%	118	30.5%	20	0%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CDC20B	166979	genome.wustl.edu	37	5	54424271	54424271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152623.2	-1	validated	p.G291D	1.000	144	0%	120	28.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like
MIR449B	693123	genome.wustl.edu	37	5	54466484	54466484	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000384995	-1	known	NULL	0.000	107	0%	90	31.1%	0	-	-	-	-	-
SKIV2L2	23517	genome.wustl.edu	37	5	54640940	54640940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015360.4	+1	validated	p.N342H	1.000	95	0%	112	29.5%	8	25%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_SSF52540
DDX4	54514	genome.wustl.edu	37	5	55110988	55110988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024415.2	+1	validated	p.V659L	1.000	289	0%	209	40.7%	0	-	possibly_damaging(0.929)	deleterious(0.01)	deleterious(0.782)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IL6ST	3572	genome.wustl.edu	37	5	55237430	55237430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002184.2	-1	reviewed	p.E746A	1.000	307	0%	275	32%	9	55.5%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ANKRD55	79722	genome.wustl.edu	37	5	55455722	55455722	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024669.2	-1	validated	e5-2	0.999	120	0%	106	29.2%	0	-	-	-	-	-
LOC345645	345645	genome.wustl.edu	37	5	55571155	55571155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342506.1	-1	model	p.E407K	1.000	23	0%	27	44.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC345645	345645	genome.wustl.edu	37	5	55572055	55572055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342506.1	-1	model	p.S121N	1.000	74	0%	78	28.2%	0	-	-	-	-	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56160643	56160643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005921.1	+1	validated	p.R306H	1.000	156	0%	118	30.5%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56177887	56177887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005921.1	+1	validated	p.P954T	1.000	189	1.1%	160	28.7%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
GPBP1	65056	genome.wustl.edu	37	5	56527024	56527024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127235.2	+1	validated	p.R96H	1.000	121	0%	163	34.4%	40	40%	benign(0.078)	tolerated(0.08)	neutral(0.305)	NULL
ACTBL2	345651	genome.wustl.edu	37	5	56777664	56777664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017992.2	-1	validated	p.R291C	1.000	109	0%	116	30.2%	1	100%	probably_damaging(0.997)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTBL2	345651	genome.wustl.edu	37	5	56778003	56778003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017992.2	-1	validated	p.R178C	1.000	165	0%	112	34.8%	0	-	probably_damaging(0.964)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PLK2	10769	genome.wustl.edu	37	5	57752910	57752910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006622.2	-1	validated	p.P340T	1.000	84	0%	73	38.4%	36	47.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
GAPT	202309	genome.wustl.edu	37	5	57790470	57790470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152687.2	+1	provisional	p.R36H	0.000	172	0%	177	25.4%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
GAPT	202309	genome.wustl.edu	37	5	57790676	57790676	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152687.2	+1	provisional	p.G105*	0.000	210	0%	209	31.6%	0	-	-	-	-	NULL
PDE4D	5144	genome.wustl.edu	37	5	59064263	59064263	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000507116	-1	known	p.L25	1.000	164	0%	124	30.6%	1	0%	-	-	-	NULL
DEPDC1B	55789	genome.wustl.edu	37	5	59934600	59934600	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018369.2	-1	validated	p.F292C	1.000	143	0%	93	39.8%	7	57.1%	benign(0.311)	tolerated(0.08)	neutral(0.397)	HMMPfam_RhoGAP,superfamily_GTPase activation domain GAP
IPO11	51194	genome.wustl.edu	37	5	61738898	61738898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134779.1	+1	validated	p.R116H	1.000	81	0%	75	26.7%	9	22.2%	benign(0.053)	deleterious(0.01)	neutral(0.409)	HMMPfam_IBN_N,superfamily_ARM repeat
ENSG00000199279	0	genome.wustl.edu	37	5	61739051	61739051	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000362409	+1	novel	NULL	0.000	16	0%	23	26.1%	0	-	-	-	-	-
HTR1A	3350	genome.wustl.edu	37	5	63257363	63257363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000524.2	-1	validated	p.A62T	1.000	46	0%	42	26.2%	0	-	benign(0.386)	tolerated(0.06)	neutral(0.446)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ADAMTS6	11174	genome.wustl.edu	37	5	64520157	64520157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_197941.2	-1	reviewed	p.K754N	0.999	233	0%	153	30.7%	0	-	possibly_damaging(0.437)	tolerated(0.54)	neutral(0.150)	HMMPfam_ADAM_spacer1
ADAMTS6	11174	genome.wustl.edu	37	5	64569234	64569234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_197941.2	-1	reviewed	p.R518H	1.000	184	0%	164	27.4%	1	100%	probably_damaging(0.984)	deleterious(0.05)	deleterious(0.776)	NULL
TRIM23	373	genome.wustl.edu	37	5	64913979	64913979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001656.3	-1	reviewed	p.R62H	1.000	76	0%	86	31.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
SGTB	54557	genome.wustl.edu	37	5	64968091	64968091	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019072.2	-1	validated	p.Q233	1.000	209	0%	197	30.5%	5	0%	-	-	-	NULL
ERBB2IP	55914	genome.wustl.edu	37	5	65288560	65288560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018695.2	+1	reviewed	p.R5Q	1.000	251	0%	243	29.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ERBB2IP	55914	genome.wustl.edu	37	5	65350256	65350256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018695.2	+1	reviewed	p.R1037Q	0.998	294	0%	233	27%	25	24%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
MAST4	375449	genome.wustl.edu	37	5	66440541	66440541	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000443808	+1	known	p.E49*	0.997	89	0%	51	27.5%	1	0%	benign(0.004)	tolerated(0.59)	neutral(0.004)	NULL
MAST4	375449	genome.wustl.edu	37	5	66462704	66462704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015183.2	+1	validated	p.A2377V	0.000	20	0%	16	62.5%	3	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67588951	67588951	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181523.1	+1	reviewed	p.R348*	1.000	76	0%	73	31.5%	3	0%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PIK3R1	5295	genome.wustl.edu	37	5	67592129	67592129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181523.1	+1	reviewed	p.R649W	1.000	207	0%	164	29.3%	19	21%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
CCNB1	891	genome.wustl.edu	37	5	68470860	68470860	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031966.2	+1	reviewed	p.K288Q	1.000	267	0.4%	235	30.6%	215	53%	benign(0.003)	tolerated(0.4)	neutral(0.016)	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like
CDK7	1022	genome.wustl.edu	37	5	68555718	68555718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001799.3	+1	validated	p.S161Y	1.000	132	0%	131	35.9%	33	27.2%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CCDC125	202243	genome.wustl.edu	37	5	68578590	68578590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176816.3	-1	validated	p.R501I	0.040	291	0%	221	26.7%	3	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
BDP1	55814	genome.wustl.edu	37	5	70759924	70759924	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018429.2	+1	reviewed	p.S213	0.001	179	0.6%	113	29.2%	0	-	-	-	-	NULL
BDP1	55814	genome.wustl.edu	37	5	70785285	70785285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018429.2	+1	reviewed	p.S423Y	0.000	169	0%	129	20.2%	1	0%	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
BDP1	55814	genome.wustl.edu	37	5	70800527	70800527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018429.2	+1	reviewed	p.S774Y	0.001	132	0%	101	25.7%	1	0%	benign(0.318)	deleterious(0.04)	neutral(0.449)	NULL
MCCC2	64087	genome.wustl.edu	37	5	70942069	70942069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022132.4	+1	reviewed	p.R394I	1.000	116	0%	109	21.1%	45	62.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
MAP1B	4131	genome.wustl.edu	37	5	71490351	71490351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005909.3	+1	validated	p.K390T	1.000	270	0%	302	26.2%	2	100%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71491087	71491087	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005909.3	+1	validated	p.E635	1.000	322	0%	348	30.2%	4	0%	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71491727	71491727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005909.3	+1	validated	p.D849N	0.847	639	0%	685	30.9%	0	-	unknown(0)	deleterious(0.04)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71495733	71495733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005909.3	+1	validated	p.S2184L	1.000	334	0%	296	25%	18	33.3%	unknown(0)	deleterious(0.02)	-	NULL
MRPS27	23107	genome.wustl.edu	37	5	71593475	71593475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015084.2	-1	reviewed	p.S69Y	1.000	56	0%	48	14.6%	36	22.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_MRP-S27
TNPO1	3842	genome.wustl.edu	37	5	72185728	72185728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002270.3	+1	reviewed	p.L549I	1.000	152	0%	126	27%	56	39.2%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	superfamily_ARM repeat
RGNEF	64283	genome.wustl.edu	37	5	72980695	72980695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080479.2	+1	reviewed	p.E7K	0.989	99	1%	72	34.7%	2	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73128202	73128202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080479.2	+1	reviewed	p.S355L	0.012	73	0%	69	31.9%	0	-	possibly_damaging(0.485)	deleterious(0.03)	deleterious(0.525)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73142255	73142255	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080479.2	+1	reviewed	p.I530	1.000	134	0%	94	28.7%	0	-	-	-	-	NULL
HEXB	3074	genome.wustl.edu	37	5	74016271	74016271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000521.3	+1	reviewed	p.Q479R	0.792	303	0%	260	26.2%	153	1.3%	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases
GCNT4	51301	genome.wustl.edu	37	5	74325002	74325002	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016591.2	-1	validated	p.I287	0.964	279	0%	227	26.4%	1	0%	-	-	-	HMMPfam_Branch
HMGCR	3156	genome.wustl.edu	37	5	74651313	74651313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000859.2	+1	reviewed	p.A616T	0.510	255	0%	240	30%	36	44.4%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_HMG-CoA_red,superfamily_NAD-binding domain of HMG-CoA reductase,superfamily_Substrate-binding domain of HMG-CoA reductase
COL4A3BP	10087	genome.wustl.edu	37	5	74685485	74685485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130105.1	-1	reviewed	p.T534A	1.000	75	0%	70	35.7%	10	60%	benign(0.004)	tolerated(0.76)	neutral(0.001)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
POLK	51426	genome.wustl.edu	37	5	74872726	74872726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016218.2	+1	validated	p.Y221C	0.244	73	0%	62	27.4%	7	57.1%	possibly_damaging(0.568)	deleterious(0.03)	deleterious(0.559)	HMMPfam_IMS,superfamily_DNA/RNA polymerases
SV2C	22987	genome.wustl.edu	37	5	75505594	75505594	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014979.1	+1	provisional	p.Y265*	1.000	175	0%	136	27.2%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SV2C	22987	genome.wustl.edu	37	5	75596631	75596631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014979.1	+1	provisional	p.T572A	1.000	226	0%	188	36.7%	0	-	benign(0.009)	deleterious(0.05)	neutral(0.346)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75964620	75964620	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006633.2	+1	validated	p.E932*	1.000	128	0%	103	31.1%	2	0%	-	-	-	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
F2R	2149	genome.wustl.edu	37	5	76028233	76028233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001992.3	+1	reviewed	p.K61N	0.000	186	0%	128	21.9%	15	0%	benign(0.011)	tolerated(0.21)	neutral(0.044)	superfamily_SSF81321
F2RL1	2150	genome.wustl.edu	37	5	76128733	76128733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005242.4	+1	validated	p.L101I	0.231	239	0%	264	28.4%	27	40.7%	benign(0.022)	tolerated(0.29)	neutral(0.030)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
S100Z	170591	genome.wustl.edu	37	5	76173619	76173619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130772.3	+1	validated	p.D88Y	1.000	47	0%	70	40%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	superfamily_EF-hand
CRHBP	1393	genome.wustl.edu	37	5	76259270	76259270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001882.3	+1	reviewed	p.P266S	1.000	277	0%	307	28.7%	0	-	benign(0)	tolerated(0.96)	-	HMMPfam_CRF-BP
AGGF1	55109	genome.wustl.edu	37	5	76326683	76326683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018046.3	+1	validated	p.K31T	1.000	11	0%	15	26.7%	2	50%	probably_damaging(0.958)	tolerated(0.36)	neutral(0.422)	NULL
AGGF1	55109	genome.wustl.edu	37	5	76348566	76348566	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018046.3	+1	validated	p.Q467H	1.000	40	0%	28	50%	21	57.1%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain
PDE8B	8622	genome.wustl.edu	37	5	76715606	76715606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003719.2	+1	validated	p.T715M	1.000	107	0%	78	34.6%	1	0%	possibly_damaging(0.939)	deleterious(0.03)	deleterious(0.749)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
OTP	23440	genome.wustl.edu	37	5	76932670	76932670	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032109.2	-1	reviewed	p.I141	1.000	105	0%	72	40.3%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
AP3B1	8546	genome.wustl.edu	37	5	77423876	77423876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003664.3	-1	reviewed	p.R649Q	1.000	278	0%	208	31.7%	27	29.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AP3B1	8546	genome.wustl.edu	37	5	77436967	77436967	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003664.3	-1	reviewed	p.Q550	1.000	144	0%	144	29.2%	7	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
DMGDH	29958	genome.wustl.edu	37	5	78340364	78340364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013391.2	-1	reviewed	p.R253C	1.000	122	0%	86	10.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
BHMT	635	genome.wustl.edu	37	5	78415084	78415084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001713.2	+1	reviewed	p.R57C	1.000	135	0%	105	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_S-methyl_trans,superfamily_S_methyl_trans
CMYA5	202333	genome.wustl.edu	37	5	79027856	79027856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153610.3	+1	validated	p.A1090S	0.000	252	0%	171	31%	0	-	probably_damaging(0.953)	tolerated(0.07)	deleterious(0.716)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79028182	79028182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153610.3	+1	validated	p.Q1198H	1.000	182	0%	168	25.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79028612	79028612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153610.3	+1	validated	p.E1342K	1.000	130	0%	136	28.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79028956	79028956	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153610.3	+1	validated	p.E1456	0.177	188	0%	160	33.1%	0	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79031476	79031476	+	Silent	SNP	C	C	T	rs183961270	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153610.3	+1	validated	p.G2296	0.000	459	0%	284	29.9%	0	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79033296	79033296	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153610.3	+1	validated	p.N2903T	0.000	318	0%	219	32.4%	0	-	possibly_damaging(0.602)	deleterious(0.01)	deleterious(0.614)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79034528	79034528	+	Missense_Mutation	SNP	G	G	A	rs185593612	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153610.3	+1	validated	p.V3314I	0.000	486	0%	444	31.1%	1	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
MTX3	345778	genome.wustl.edu	37	5	79284998	79284998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010891.4	-1	validated	p.E100K	1.000	45	0%	40	30%	0	-	benign(0.164)	tolerated(0.31)	neutral(0.042)	HMMPfam_Tom37
MSH3	4437	genome.wustl.edu	37	5	80024750	80024750	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002439.3	+1	reviewed	p.E512*	1.000	317	0%	248	34.3%	4	0%	-	-	-	HMMPfam_MutS_II,superfamily_DNA repair protein MutS domain II
RASGRF2	5924	genome.wustl.edu	37	5	80390127	80390127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006909.1	+1	validated	p.L522M	1.000	28	0%	39	25.6%	0	-	benign(0.352)	deleterious(0)	deleterious(0.556)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CKMT2	1160	genome.wustl.edu	37	5	80559419	80559419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099735.1	+1	reviewed	p.R375I	1.000	189	0%	149	25.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931
ATP6AP1L	92270	genome.wustl.edu	37	5	81608496	81608496	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017971.1	+1	provisional	p.I66	0.190	178	0%	129	31%	3	66.6%	-	-	-	HMMPfam_ATP-synt_S1
VCAN	1462	genome.wustl.edu	37	5	82789695	82789695	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004385.4	+1	reviewed	p.G231	0.008	151	0%	116	30.2%	8	0%	-	-	-	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
VCAN	1462	genome.wustl.edu	37	5	82815203	82815203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004385.4	+1	reviewed	p.A360T	0.996	196	0%	174	34.5%	0	-	benign(0.015)	tolerated(0.5)	neutral(0.011)	NULL
VCAN	1462	genome.wustl.edu	37	5	82816178	82816178	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004385.4	+1	reviewed	p.E685*	0.042	201	0%	162	22.8%	0	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82835388	82835388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004385.4	+1	reviewed	p.G2189D	0.000	264	0%	232	33.6%	21	0%	probably_damaging(1)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82836701	82836701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004385.4	+1	reviewed	p.V2627I	0.000	191	0%	190	30%	32	0%	benign(0.055)	-	-	NULL
HAPLN1	1404	genome.wustl.edu	37	5	82940268	82940268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001884.3	-1	validated	p.N230S	1.000	68	0%	81	39.5%	2	0%	benign(0.02)	tolerated(0.21)	neutral(0.045)	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
HAPLN1	1404	genome.wustl.edu	37	5	82948556	82948556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001884.3	-1	validated	p.F63C	1.000	219	0%	147	27.2%	2	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
EDIL3	10085	genome.wustl.edu	37	5	83525687	83525687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005711.3	-1	reviewed	p.E71G	1.000	130	0%	85	22.4%	4	0%	benign(0.079)	tolerated(0.28)	neutral(0.037)	superfamily_EGF/Laminin
EDIL3	10085	genome.wustl.edu	37	5	83549932	83549932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005711.3	-1	reviewed	p.D56Y	1.000	90	0%	81	9.9%	7	0%	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
RASA1	5921	genome.wustl.edu	37	5	86659272	86659272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002890.1	+1	reviewed	p.D521Y	1.000	120	0%	78	34.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CETN3	1070	genome.wustl.edu	37	5	89701605	89701605	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004365.2	-1	reviewed	p.R55	1.000	163	0%	131	29.8%	26	7.6%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
CETN3	1070	genome.wustl.edu	37	5	89703584	89703584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004365.2	-1	reviewed	p.E29*	1.000	154	0%	141	26.2%	18	5.5%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
GPR98	84059	genome.wustl.edu	37	5	89979966	89979966	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032119.3	+1	reviewed	p.I2076	1.000	97	0%	62	32.3%	0	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89990192	89990192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032119.3	+1	reviewed	p.I2540S	0.995	223	0%	216	32.9%	0	-	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
GPR98	84059	genome.wustl.edu	37	5	90050961	90050961	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032119.3	+1	reviewed	p.E3847*	1.000	182	0%	105	22.9%	2	100%	-	-	-	NULL
GPR98	84059	genome.wustl.edu	37	5	90085619	90085619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032119.3	+1	reviewed	p.L4665R	0.005	19	0%	24	25%	0	-	benign(0.012)	tolerated(0.3)	neutral(0.029)	NULL
GPR98	84059	genome.wustl.edu	37	5	90106137	90106137	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032119.3	+1	reviewed	p.T5020	0.000	54	0%	42	33.3%	0	-	-	-	-	HMMSmart_SM00237
KIAA0825	285600	genome.wustl.edu	37	5	93856130	93856130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145678.1	-1	validated	p.I265L	1.000	79	0%	49	24.5%	0	-	possibly_damaging(0.889)	tolerated(0.12)	deleterious(0.610)	NULL
ANKRD32	84250	genome.wustl.edu	37	5	94030655	94030655	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032290.3	+1	validated	p.F939V	1.000	175	0%	147	27.9%	5	60%	benign(0.425)	deleterious(0)	deleterious(0.583)	superfamily_ANK
FAM81B	153643	genome.wustl.edu	37	5	94749818	94749818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152548.2	+1	validated	p.S154L	0.001	223	0%	208	11.5%	1	100%	unknown(0)	-	-	NULL
FAM81B	153643	genome.wustl.edu	37	5	94772515	94772515	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152548.2	+1	validated	p.L266	1.000	124	0%	107	26.2%	1	0%	-	-	-	NULL
FAM81B	153643	genome.wustl.edu	37	5	94782326	94782326	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152548.2	+1	validated	p.E318D	0.988	72	0%	56	46.4%	0	-	possibly_damaging(0.549)	tolerated(0.06)	deleterious(0.509)	NULL
SPATA9	83890	genome.wustl.edu	37	5	95018514	95018514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031952.3	-1	validated	p.K15N	1.000	149	0%	145	29.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
RHOBTB3	22836	genome.wustl.edu	37	5	95091126	95091126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014899.3	+1	validated	p.A237S	1.000	238	0%	262	29%	0	-	possibly_damaging(0.596)	tolerated(0.69)	neutral(0.208)	NULL
RHOBTB3	22836	genome.wustl.edu	37	5	95091302	95091302	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014899.3	+1	validated	p.D295E	0.338	215	0%	239	38.5%	4	0%	possibly_damaging(0.945)	tolerated(1)	neutral(0.390)	HMMSmart_BTB
ELL2	22936	genome.wustl.edu	37	5	95226756	95226756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000508757	-1	known	p.S122Y	0.001	180	0%	138	29%	0	-	unknown(0)	deleterious(0)	-	NULL
ELL2	22936	genome.wustl.edu	37	5	95234143	95234143	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012081.5	-1	validated	p.S442	0.202	296	0%	234	29.1%	6	16.6%	-	-	-	NULL
ELL2	22936	genome.wustl.edu	37	5	95234393	95234393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012081.5	-1	validated	p.S359Y	0.866	245	0%	239	28%	4	0%	possibly_damaging(0.513)	deleterious(0.02)	deleterious(0.555)	NULL
ELL2	22936	genome.wustl.edu	37	5	95236413	95236413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012081.5	-1	validated	p.A313D	0.993	142	0%	128	26.6%	6	0%	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
PCSK1	5122	genome.wustl.edu	37	5	95746599	95746599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000439.4	-1	reviewed	p.S325I	1.000	285	0%	242	13.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
PCSK1	5122	genome.wustl.edu	37	5	95761553	95761553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000439.4	-1	reviewed	p.D123N	1.000	155	0%	118	34.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Pept_S8_S53
ERAP2	64167	genome.wustl.edu	37	5	96215729	96215729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130140.1	+1	validated	p.D114Y	0.981	159	0%	162	29%	7	28.5%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
ERAP2	64167	genome.wustl.edu	37	5	96215743	96215743	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130140.1	+1	validated	p.T118	0.000	155	0%	155	30.3%	11	0%	-	-	-	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
ERAP2	64167	genome.wustl.edu	37	5	96253260	96253260	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130140.1	+1	validated	p.L945R	0.997	66	0%	56	23.2%	35	0%	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	NULL
SLCO4C1	353189	genome.wustl.edu	37	5	101593780	101593780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_180991.4	-1	validated	p.K380N	1.000	148	0%	131	34.4%	0	-	possibly_damaging(0.768)	tolerated(0.22)	neutral(0.327)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO4C1	353189	genome.wustl.edu	37	5	101627074	101627074	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_180991.4	-1	validated	p.E198*	0.000	106	0%	120	30.8%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO4C1	353189	genome.wustl.edu	37	5	101627154	101627154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_180991.4	-1	validated	p.K171T	1.000	85	0%	66	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO6A1	133482	genome.wustl.edu	37	5	101834423	101834423	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173488.3	-1	validated	p.S42	0.001	194	0%	150	28.7%	0	-	-	-	-	NULL
PPIP5K2	23262	genome.wustl.edu	37	5	102484981	102484981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015216.2	+1	provisional	p.E290D	1.000	143	0%	102	26.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56059
NUDT12	83594	genome.wustl.edu	37	5	102890543	102890543	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031438.2	-1	validated	p.I326F	1.000	142	0%	96	33.3%	5	40%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	HMMPfam_NUDIX,superfamily_Nudix
FBXL17	64839	genome.wustl.edu	37	5	107684213	107684213	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000496714	-1	known	p.E67*	1.000	115	0%	92	31.5%	5	20%	-	-	-	superfamily_SSF52047
FER	2241	genome.wustl.edu	37	5	108373124	108373124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005246.2	+1	reviewed	p.D553G	1.000	56	0%	64	23.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like),superfamily_SH2 domain
PJA2	9867	genome.wustl.edu	37	5	108679927	108679927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014819.4	-1	validated	p.F655L	1.000	51	0%	28	39.3%	19	36.8%	possibly_damaging(0.94)	tolerated(0.58)	neutral(0.390)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
MAN2A1	4124	genome.wustl.edu	37	5	109110612	109110612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002372.2	+1	reviewed	p.K440N	1.000	90	0%	67	25.4%	3	0%	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
SLC25A46	91137	genome.wustl.edu	37	5	110096916	110096916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138773.1	+1	provisional	p.R231*	1.000	318	0.3%	293	29.7%	15	53.3%	-	-	-	superfamily_Mitochondrial carrier
TSLP	85480	genome.wustl.edu	37	5	110409333	110409333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033035.4	+1	reviewed	p.S114L	0.000	196	0%	171	24%	0	-	possibly_damaging(0.494)	-	-	NULL
WDR36	134430	genome.wustl.edu	37	5	110439612	110439612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139281.2	+1	reviewed	p.R298H	1.000	108	0%	122	29.5%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like
WDR36	134430	genome.wustl.edu	37	5	110441003	110441003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139281.2	+1	reviewed	p.G402E	1.000	128	0%	109	26.6%	1	0%	probably_damaging(0.956)	tolerated(0.09)	deleterious(0.696)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CAMK4	814	genome.wustl.edu	37	5	110819758	110819758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001744.3	+1	reviewed	p.L339P	0.989	64	0%	75	25.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
APC	324	genome.wustl.edu	37	5	112111406	112111406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000038.4	+1	reviewed	p.R168I	1.000	138	0%	119	32.8%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
APC	324	genome.wustl.edu	37	5	112177901	112177901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000038.4	+1	reviewed	p.R2204*	0.999	275	0%	277	31%	8	62.5%	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112178365	112178365	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000038.4	+1	reviewed	p.S2358	0.999	244	0%	272	30.5%	5	0%	-	-	-	HMMPfam_APC_basic
ZRSR1	7310	genome.wustl.edu	37	5	112228098	112228098	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000391338	+1	known	p.N254	0.986	219	0%	245	32.2%	3	0%	-	-	-	HMMSmart_RRM,superfamily_SSF54928
DCP2	167227	genome.wustl.edu	37	5	112343727	112343727	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000513585	+1	known	p.E327K	1.000	136	0%	136	25%	4	50%	-	-	-	NULL
MCC	4163	genome.wustl.edu	37	5	112458462	112458462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085377.1	-1	reviewed	p.E316K	1.000	79	0%	88	38.6%	1	0%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
MCC	4163	genome.wustl.edu	37	5	112479008	112479008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085377.1	-1	reviewed	p.T264M	1.000	103	0%	92	31.5%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
YTHDC2	64848	genome.wustl.edu	37	5	112862429	112862429	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022828.3	+1	validated	p.E208*	1.000	151	0%	130	29.2%	0	-	-	-	-	HMMSmart_DEXDc,superfamily_SSF52540
YTHDC2	64848	genome.wustl.edu	37	5	112874797	112874797	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022828.3	+1	validated	p.E377*	1.000	56	0%	44	18.2%	0	-	-	-	-	HMMSmart_DEXDc
YTHDC2	64848	genome.wustl.edu	37	5	112891750	112891750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022828.3	+1	validated	p.K712T	1.000	55	0%	38	34.2%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
YTHDC2	64848	genome.wustl.edu	37	5	112896818	112896818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022828.3	+1	validated	p.S753I	1.000	256	0%	137	23.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
YTHDC2	64848	genome.wustl.edu	37	5	112920051	112920051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022828.3	+1	validated	p.D1234Y	1.000	258	0%	161	31.1%	2	0%	benign(0.005)	deleterious(0.03)	neutral(0.364)	NULL
PGGT1B	5229	genome.wustl.edu	37	5	114598436	114598436	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005023.3	-1	validated	p.E38V	1.000	19	0%	17	35.3%	5	40%	benign(0.11)	tolerated(0.2)	neutral(0.058)	superfamily_Terpenoid cyclases/Protein prenyltransferases
CCDC112	153733	genome.wustl.edu	37	5	114607050	114607050	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040440.2	-1	validated	p.K398Q	0.918	378	0%	330	30.3%	9	88.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TICAM2	353376	genome.wustl.edu	37	5	114916256	114916256	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021649.5	-1	validated	p.F233C	0.000	60	0%	57	33.3%	5	20%	benign(0.394)	deleterious(0)	deleterious(0.571)	NULL
TMED7	51014	genome.wustl.edu	37	5	114956272	114956272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181836.5	-1	validated	p.A100T	1.000	185	0%	150	38%	51	33.3%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMPfam_EMP24_GP25L,superfamily_SSF101576
CDO1	1036	genome.wustl.edu	37	5	115146946	115146946	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001801.2	-1	validated	p.T105	0.019	545	0%	411	29%	2	0%	-	-	-	HMMPfam_CDO_I,superfamily_RmlC-like cupins
AQPEP	206338	genome.wustl.edu	37	5	115346437	115346437	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173800.4	+1	validated	e14-1	1.000	84	0%	67	25.4%	0	-	-	-	-	-
AQPEP	206338	genome.wustl.edu	37	5	115348087	115348087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173800.4	+1	validated	p.R755I	1.000	160	0%	148	29.7%	0	-	benign(0.195)	tolerated(0.14)	neutral(0.268)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118485422	118485422	+	Silent	SNP	C	C	T	rs142149872	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005509.4	+1	validated	p.F1300	0.083	160	0%	150	28.7%	0	-	-	-	-	NULL
DMXL1	1657	genome.wustl.edu	37	5	118487671	118487671	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005509.4	+1	validated	p.R1548*	1.000	298	0%	239	30.5%	2	0%	-	-	-	NULL
DMXL1	1657	genome.wustl.edu	37	5	118500367	118500367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005509.4	+1	validated	p.E1623A	1.000	136	0%	109	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118529625	118529625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005509.4	+1	validated	p.D2473N	0.963	159	0%	172	30.2%	3	100%	benign(0.004)	tolerated(0.34)	neutral(0.023)	superfamily_WD40 repeat-like
FAM170A	340069	genome.wustl.edu	37	5	118965471	118965471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182761.3	+1	validated	p.R3Q	0.094	320	0%	259	14.3%	0	-	benign(0.025)	tolerated(0.23)	neutral(0.043)	NULL
PRR16	51334	genome.wustl.edu	37	5	120022105	120022105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016644.1	+1	provisional	p.R183W	0.963	185	0%	224	28.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FTMT	94033	genome.wustl.edu	37	5	121188134	121188134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177478.1	+1	validated	p.A159V	1.000	122	0%	101	26.7%	0	-	possibly_damaging(0.433)	deleterious(0.01)	deleterious(0.546)	HMMPfam_Ferritin,superfamily_Ferritin/RR_like
SRFBP1	153443	genome.wustl.edu	37	5	121356184	121356184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152546.2	+1	validated	p.E252K	0.766	312	0%	295	33.6%	9	100%	benign(0.235)	tolerated(0.25)	neutral(0.060)	NULL
CEP120	153241	genome.wustl.edu	37	5	122708447	122708447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153223.3	-1	reviewed	p.K793T	1.000	90	0%	105	33.3%	7	14.2%	possibly_damaging(0.901)	tolerated(0.18)	neutral(0.413)	NULL
ZNF608	57507	genome.wustl.edu	37	5	123979265	123979265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020747.2	-1	validated	p.E1412G	1.000	79	0%	79	31.6%	22	40.9%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ZNF608	57507	genome.wustl.edu	37	5	123980160	123980160	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020747.2	-1	validated	p.H1300	0.957	265	0%	263	28.9%	15	46.6%	-	-	-	NULL
GRAMD3	65983	genome.wustl.edu	37	5	125819157	125819157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023927.2	+1	validated	p.D246E	1.000	143	0%	111	25.2%	10	40%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
LMNB1	4001	genome.wustl.edu	37	5	126171927	126171927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005573.2	+1	reviewed	p.A578T	0.975	163	0%	217	35%	70	64.2%	benign(0.005)	tolerated(0.7)	neutral(0.002)	NULL
MEGF10	84466	genome.wustl.edu	37	5	126676233	126676233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032446.2	+1	validated	p.R77Q	1.000	281	0%	242	24%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_EMI
MEGF10	84466	genome.wustl.edu	37	5	126781360	126781360	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032446.2	+1	validated	p.V901	1.000	144	0%	107	22.4%	0	-	-	-	-	NULL
PRRC1	133619	genome.wustl.edu	37	5	126874763	126874763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130809.3	+1	validated	p.R318Q	0.045	171	0%	137	31.4%	31	45.1%	possibly_damaging(0.845)	tolerated(0.2)	neutral(0.373)	superfamily_Maf/Ham1
FBN2	2201	genome.wustl.edu	37	5	127641206	127641206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001999.3	-1	reviewed	p.V1891I	0.988	141	0%	107	25.2%	4	50%	benign(0.008)	tolerated(0.71)	neutral(0.002)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127642872	127642872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001999.3	-1	reviewed	p.N1793D	1.000	251	0%	128	33.6%	9	77.7%	benign(0.046)	tolerated(0.39)	neutral(0.018)	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN2	2201	genome.wustl.edu	37	5	127681270	127681270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001999.3	-1	reviewed	p.R999H	1.000	203	0%	204	28.4%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
SLC27A6	28965	genome.wustl.edu	37	5	128359345	128359345	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017372.1	+1	reviewed	p.D399	0.999	105	0%	92	22.8%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
CHSY3	337876	genome.wustl.edu	37	5	129520330	129520330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175856.4	+1	validated	p.V499I	0.963	110	0.9%	100	31%	4	0%	benign(0.228)	tolerated(0.88)	neutral(0.022)	HMMPfam_CHGN
HINT1	3094	genome.wustl.edu	37	5	130495001	130495001	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_024610.1	-1	validated	NULL	1.000	31	0%	32	31.2%	220	45%	-	-	-	-
FNIP1	96459	genome.wustl.edu	37	5	131007751	131007751	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133372.2	-1	validated	p.E796*	1.000	455	0%	381	28.9%	1	0%	-	-	-	NULL
CCNI2	645121	genome.wustl.edu	37	5	132085048	132085048	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039780.2	+1	provisional	p.E189	0.000	71	0%	46	39.1%	1	0%	-	-	-	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like
HSPA4	3308	genome.wustl.edu	37	5	132424239	132424239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002154.3	+1	validated	p.A377T	1.000	164	0%	150	24.7%	126	41.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_HSP70,superfamily_SSF53067
FSTL4	23105	genome.wustl.edu	37	5	132569152	132569152	+	Silent	SNP	G	G	A	rs190908572	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015082.1	-1	validated	p.S324	0.595	68	0%	69	30.4%	8	25%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
VDAC1	7416	genome.wustl.edu	37	5	133316577	133316577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003374.1	-1	provisional	p.D132N	1.000	136	0%	118	62.7%	319	88.4%	probably_damaging(0.985)	tolerated(0.11)	deleterious(0.704)	HMMPfam_Porin_3
VDAC1	7416	genome.wustl.edu	37	5	133326731	133326731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003374.1	-1	provisional	p.D78N	1.000	404	0%	377	30.8%	282	41.1%	probably_damaging(0.976)	tolerated(0.09)	deleterious(0.714)	HMMPfam_Porin_3
CDKL3	51265	genome.wustl.edu	37	5	133640227	133640227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113575.1	-1	reviewed	p.R497Q	0.975	62	0%	47	40.4%	0	-	benign(0.038)	deleterious(0.01)	neutral(0.408)	NULL
PHF15	23338	genome.wustl.edu	37	5	133909367	133909367	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015288.4	+1	provisional	p.R489	0.962	62	0%	64	21.9%	9	33.3%	-	-	-	NULL
SEC24A	10802	genome.wustl.edu	37	5	134028296	134028296	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000513123	+1	known	p.F122C	0.991	110	0%	75	34.7%	9	66.6%	-	-	-	HMMPfam_Sec23_trunk,superfamily_vWA-like
DDX46	9879	genome.wustl.edu	37	5	134106675	134106675	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014829.2	+1	reviewed	p.E145*	1.000	120	0%	115	37.4%	11	0%	-	-	-	NULL
TGFBI	7045	genome.wustl.edu	37	5	135385184	135385184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000504205	+1	known	p.R47H	0.000	55	0%	52	36.5%	63	0%	unknown(0)	-	-	NULL
SMAD5	4090	genome.wustl.edu	37	5	135489807	135489807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398807	+1	known	p.E120*	1.000	68	0%	80	28.7%	3	0%	-	-	-	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain
SMAD5	4090	genome.wustl.edu	37	5	135513092	135513092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398807	+1	known	p.H440R	1.000	49	2%	48	27.1%	4	25%	benign(0.222)	deleterious(0)	neutral(0.467)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
TRPC7	57113	genome.wustl.edu	37	5	135610523	135610523	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000378459	-1	known	p.R261C	1.000	41	0%	40	17.5%	0	-	-	-	-	NULL
KLHL3	26249	genome.wustl.edu	37	5	137045539	137045539	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017415.2	-1	validated	p.Q47	1.000	110	0%	94	22.3%	0	-	-	-	-	superfamily_POZ domain,HMMPfam_BTB
PKD2L2	27039	genome.wustl.edu	37	5	137226177	137226177	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014386.2	+1	validated	p.S13	0.000	151	0%	140	32.1%	0	-	-	-	-	NULL
BRD8	10902	genome.wustl.edu	37	5	137502262	137502262	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139199.1	-1	reviewed	p.A314	1.000	31	0%	29	44.8%	20	40%	-	-	-	NULL
KIF20A	10112	genome.wustl.edu	37	5	137520075	137520075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005733.2	+1	validated	p.F500L	1.000	327	0%	302	29.1%	33	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
CDC23	8697	genome.wustl.edu	37	5	137542299	137542299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000505120	-1	known	p.H102R	0.714	124	0%	104	31.7%	13	61.5%	possibly_damaging(0.602)	deleterious(0)	deleterious(0.653)	HMMPfam_APC8
KDM3B	51780	genome.wustl.edu	37	5	137727661	137727661	+	Silent	SNP	G	G	A	rs187275789	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016604.3	+1	validated	p.P780	0.997	334	0%	384	21.9%	7	71.4%	-	-	-	NULL
KDM3B	51780	genome.wustl.edu	37	5	137735651	137735651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016604.3	+1	validated	p.F1050S	1.000	184	0%	190	26.8%	23	86.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137761113	137761113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016604.3	+1	validated	p.S1418L	1.000	75	0%	91	36.3%	33	30.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Clavaminate synthase-like
KDM3B	51780	genome.wustl.edu	37	5	137763753	137763753	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016604.3	+1	validated	p.I1577	0.397	378	0%	478	28.9%	32	18.7%	-	-	-	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
ETF1	2107	genome.wustl.edu	37	5	137853315	137853315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004730.2	-1	validated	p.D113Y	1.000	163	0%	151	37.7%	74	44.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_eRF1_1,superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1
HSPA9	3313	genome.wustl.edu	37	5	137902767	137902767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004134.6	-1	reviewed	p.N268H	1.000	95	0%	93	21.5%	143	41.9%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_HSP70,superfamily_SSF53067
CTNNA1	1495	genome.wustl.edu	37	5	138145786	138145786	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001903.2	+1	validated	p.R121*	1.000	146	0%	94	35.1%	24	0%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
CTNNA1	1495	genome.wustl.edu	37	5	138223278	138223278	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001903.2	+1	validated	p.E415*	1.000	273	0%	204	27.5%	31	6.4%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
SIL1	64374	genome.wustl.edu	37	5	138456818	138456818	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037633.1	-1	reviewed	p.E50D	0.250	137	0%	116	32.8%	48	41.6%	possibly_damaging(0.892)	tolerated(0.4)	neutral(0.367)	superfamily_ARM-type_fold
PSD2	84249	genome.wustl.edu	37	5	139201585	139201585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032289.2	+1	provisional	p.S402L	0.980	113	0%	116	14.7%	0	-	benign(0.109)	deleterious(0)	neutral(0.453)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
PSD2	84249	genome.wustl.edu	37	5	139215321	139215321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032289.2	+1	provisional	p.S458F	1.000	385	0%	271	28.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
NRG2	9542	genome.wustl.edu	37	5	139231369	139231369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013982.2	-1	reviewed	p.S539Y	0.999	56	0%	40	45%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Neuregulin
NRG2	9542	genome.wustl.edu	37	5	139232023	139232023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013982.2	-1	reviewed	p.S521T	1.000	76	0%	89	36%	0	-	probably_damaging(0.973)	tolerated(0.23)	neutral(0.456)	HMMPfam_Neuregulin
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139903697	139903697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020690.4	+1	reviewed	p.K1455T	1.000	94	0%	84	28.6%	9	0%	benign(0.224)	deleterious(0)	neutral(0.467)	NULL
DND1	373863	genome.wustl.edu	37	5	140051176	140051176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194249.1	-1	provisional	p.A255V	0.992	17	0%	18	44.4%	21	66.6%	benign(0.188)	deleterious(0.01)	neutral(0.423)	NULL
ENSG00000249821	0	genome.wustl.edu	37	5	140165631	140165631	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000508944	-1	known	NULL	0.001	14	0%	18	50%	1	100%	-	-	-	-
PCDHA1	56147	genome.wustl.edu	37	5	140166575	140166575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018900.2	+1	reviewed	p.D234N	0.985	103	0%	88	31.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA2	56146	genome.wustl.edu	37	5	140175140	140175140	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018905.2	+1	reviewed	p.G197	0.000	124	0%	93	24.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140187605	140187605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018907.2	+1	reviewed	p.V278A	0.000	140	0%	140	32.9%	9	55.5%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140201924	140201924	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018908.2	+1	reviewed	p.T188	0.000	91	0%	63	23.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140202603	140202603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018908.2	+1	reviewed	p.E415K	1.000	89	0%	93	30.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140207946	140207946	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018909.2	+1	reviewed	p.I90	0.992	131	0%	142	26.8%	6	0%	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140207947	140207947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018909.2	+1	reviewed	p.D91N	1.000	130	0%	139	31.7%	6	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215065	140215065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018910.2	+1	reviewed	p.G366D	0.975	113	0%	107	14%	2	50%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215216	140215216	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018910.2	+1	reviewed	p.E416	0.798	118	0%	84	29.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215580	140215580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018910.2	+1	reviewed	p.R538C	0.995	51	0%	45	28.9%	0	-	possibly_damaging(0.485)	deleterious(0)	deleterious(0.606)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140221381	140221381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018911.2	+1	reviewed	p.D159N	1.000	103	0%	102	30.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140222038	140222038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018911.2	+1	reviewed	p.D378N	0.999	192	0%	178	32%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140223159	140223159	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018911.2	+1	reviewed	p.S751	0.001	33	0%	37	21.6%	0	-	-	-	-	NULL
PCDHA9	9752	genome.wustl.edu	37	5	140228494	140228494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031857.1	+1	reviewed	p.K138N	0.008	83	1.2%	98	38.8%	0	-	benign(0.055)	tolerated(0.3)	neutral(0.032)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA10	56139	genome.wustl.edu	37	5	140237695	140237695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018901.2	+1	reviewed	p.E688K	0.003	25	0%	19	36.8%	0	-	benign(0.005)	tolerated(0.07)	neutral(0.319)	NULL
PCDHA12	56137	genome.wustl.edu	37	5	140255677	140255677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018903.2	+1	reviewed	p.K207T	0.000	87	0%	59	39%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256291	140256291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018903.2	+1	reviewed	p.A412T	0.000	114	0%	107	18.7%	1	0%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC1	56135	genome.wustl.edu	37	5	140306804	140306804	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018898.3	+1	reviewed	p.K109	0.008	59	0%	44	34.1%	0	-	-	-	-	HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC1	56135	genome.wustl.edu	37	5	140308058	140308058	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018898.3	+1	reviewed	p.G527	1.000	208	0%	171	35.7%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140346885	140346885	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018899.5	+1	reviewed	p.G178	0.013	23	0%	21	38.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347060	140347060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018899.5	+1	reviewed	p.R237C	0.731	54	0%	30	13.3%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB2	56133	genome.wustl.edu	37	5	140475208	140475208	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018936.2	+1	reviewed	p.E278	0.993	184	0%	153	28.1%	11	81.8%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB3	56132	genome.wustl.edu	37	5	140481372	140481372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018937.2	+1	reviewed	p.R380I	0.000	139	0.7%	93	35.5%	2	50%	possibly_damaging(0.472)	deleterious(0)	deleterious(0.601)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB4	56131	genome.wustl.edu	37	5	140502125	140502125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018938.2	+1	reviewed	p.R182Q	0.002	142	0%	102	31.4%	0	-	benign(0.135)	tolerated(0.5)	neutral(0.021)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB5	26167	genome.wustl.edu	37	5	140515261	140515261	+	Missense_Mutation	SNP	G	G	A	rs185019496	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015669.2	+1	reviewed	p.G82D	1.000	204	0%	167	35.9%	1	0%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB5	26167	genome.wustl.edu	37	5	140516733	140516733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015669.2	+1	reviewed	p.E573K	0.997	62	0%	71	22.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140530194	140530194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018939.2	+1	reviewed	p.S119F	0.000	220	0%	224	31.2%	0	-	benign(0.134)	deleterious(0)	neutral(0.456)	HMMSmart_CA,superfamily_Cadherin
PCDHB7	56129	genome.wustl.edu	37	5	140554369	140554369	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018940.2	+1	reviewed	p.P651	0.991	48	0%	32	28.1%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB8	56128	genome.wustl.edu	37	5	140558500	140558500	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019120.2	+1	reviewed	p.V295	0.007	306	0%	236	35.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140558680	140558680	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019120.2	+1	reviewed	p.S355	0.000	375	0%	287	29.3%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140563448	140563448	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020957.1	+1	reviewed	p.T438	0.000	234	0%	170	33.5%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580724	140580724	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018931.2	+1	reviewed	p.F459	0.000	334	0%	287	31%	1	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140589344	140589344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018932.3	+1	reviewed	p.R289C	0.019	265	0.4%	202	19.3%	0	-	benign(0.006)	deleterious(0.04)	neutral(0.349)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140594388	140594388	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018933.2	+1	reviewed	p.I231	0.000	375	0%	288	24.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140594620	140594620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018933.2	+1	reviewed	p.D309N	0.980	503	0.2%	370	28.1%	0	-	possibly_damaging(0.602)	deleterious(0.05)	deleterious(0.554)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB18	54660	genome.wustl.edu	37	5	140615592	140615592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000274705	+1	known	p.S436L	1.000	241	0%	192	32.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140627433	140627433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018935.2	+1	reviewed	p.D763Y	0.992	134	0%	100	29%	0	-	possibly_damaging(0.691)	deleterious(0)	deleterious(0.692)	NULL
SLC25A2	83884	genome.wustl.edu	37	5	140682660	140682660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031947.2	-1	reviewed	p.R258I	0.844	154	0%	135	33.3%	0	-	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PCDHGA1	56114	genome.wustl.edu	37	5	140712378	140712378	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018912.2	+1	reviewed	p.I709	0.000	147	0%	100	34%	0	-	-	-	-	NULL
PCDHGA2	56113	genome.wustl.edu	37	5	140718670	140718670	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018915.2	+1	reviewed	p.F44	0.983	134	0%	128	30.5%	1	100%	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA2	56113	genome.wustl.edu	37	5	140720011	140720011	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018915.2	+1	reviewed	p.F491	0.001	245	0.4%	242	31.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140730136	140730136	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018922.2	+1	reviewed	p.F103	0.658	141	0%	102	32.4%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140730930	140730930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018922.2	+1	reviewed	p.R368Q	0.000	45	0%	76	27.6%	0	-	possibly_damaging(0.507)	tolerated(1)	neutral(0.170)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140731944	140731944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018922.2	+1	reviewed	p.A706V	0.016	147	0%	106	34.9%	0	-	benign(0.156)	tolerated(0.35)	neutral(0.035)	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140736368	140736368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018917.2	+1	reviewed	p.A534V	1.000	218	0%	218	32.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744800	140744800	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018918.2	+1	reviewed	p.I301	0.381	60	0%	68	14.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744872	140744872	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018918.2	+1	reviewed	p.G325	0.131	62	0%	64	26.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140750657	140750657	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018924.2	+1	reviewed	p.V232	0.000	159	0%	148	24.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140750877	140750877	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018924.2	+1	reviewed	p.E306*	0.000	221	0%	175	26.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140753765	140753765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018919.2	+1	reviewed	p.L39M	0.801	30	0%	25	24%	0	-	benign(0.003)	tolerated(1)	-	HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140755710	140755710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018919.2	+1	reviewed	p.S687L	0.015	112	0%	104	27.9%	0	-	benign(0.041)	deleterious(0.02)	neutral(0.386)	NULL
PCDHGA7	56108	genome.wustl.edu	37	5	140764119	140764119	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018920.2	+1	reviewed	p.F551	0.012	117	0%	87	21.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140764553	140764553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018920.2	+1	reviewed	p.A696V	1.000	56	0%	47	31.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PCDHGA7	56108	genome.wustl.edu	37	5	140764835	140764835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018920.2	+1	reviewed	p.S790Y	0.756	98	0%	61	24.6%	1	0%	benign(0.164)	deleterious(0.04)	neutral(0.364)	NULL
PCDHGB4	8641	genome.wustl.edu	37	5	140767650	140767650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003736.2	+1	reviewed	p.R67C	1.000	73	0%	78	20.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140767820	140767820	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003736.2	+1	reviewed	p.I123	0.061	88	0%	91	25.3%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140768635	140768635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003736.2	+1	reviewed	p.S395Y	0.039	131	0%	122	38.5%	3	0%	benign(0.041)	deleterious(0.01)	neutral(0.408)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140773756	140773756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032088.1	+1	reviewed	p.A459V	1.000	35	0%	32	37.5%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140784398	140784398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018921.2	+1	reviewed	p.R627C	1.000	106	0%	77	36.4%	4	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140789107	140789107	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018926.2	+1	reviewed	p.N446	1.000	93	0%	52	25%	2	0%	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140793470	140793470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018913.2	+1	reviewed	p.A243V	0.825	21	0%	24	37.5%	0	-	benign(0.006)	tolerated(0.12)	neutral(0.261)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140794237	140794237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018913.2	+1	reviewed	p.T499A	0.762	146	0.7%	121	25.6%	2	50%	benign(0.063)	tolerated(0.16)	neutral(0.064)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140802586	140802586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018914.2	+1	reviewed	p.D598Y	1.000	107	0%	93	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140802648	140802648	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018914.2	+1	reviewed	p.F618	0.599	63	0%	61	32.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140803060	140803060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018914.2	+1	reviewed	p.H756N	0.998	68	0%	57	24.6%	0	-	possibly_damaging(0.904)	deleterious(0.02)	deleterious(0.742)	NULL
PCDHGA12	26025	genome.wustl.edu	37	5	140810564	140810564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003735.2	+1	reviewed	p.R80C	0.015	100	0%	94	37.2%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140811763	140811763	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003735.2	+1	reviewed	p.P479	0.006	126	0%	107	24.3%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140866394	140866394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018928.2	+1	reviewed	p.R552C	0.884	280	0%	174	33.9%	1	100%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140869675	140869675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018929.2	+1	reviewed	p.R290W	0.003	481	0%	310	24.5%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140870615	140870615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018929.2	+1	reviewed	p.A603V	1.000	137	0.7%	99	34.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140870771	140870771	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018929.2	+1	reviewed	p.S655*	0.324	212	0%	111	31.5%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140871113	140871113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018929.2	+1	reviewed	p.S769L	0.932	131	0%	64	23.4%	0	-	possibly_damaging(0.824)	tolerated(0.13)	deleterious(0.565)	NULL
HDAC3	8841	genome.wustl.edu	37	5	141009646	141009646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003883.3	-1	reviewed	p.A110T	0.998	222	0%	181	31.5%	40	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
ARHGAP26	23092	genome.wustl.edu	37	5	142513550	142513550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015071.4	+1	reviewed	p.D573N	0.990	412	0%	302	31.8%	15	66.6%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_GTPase activation domain GAP
NR3C1	2908	genome.wustl.edu	37	5	142680092	142680092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024094.1	-1	reviewed	p.R570W	0.996	585	0%	539	31.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
NR3C1	2908	genome.wustl.edu	37	5	142779683	142779683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024094.1	-1	reviewed	p.S241L	0.000	155	0%	123	31.7%	2	0%	benign(0)	tolerated(0.94)	-	HMMPfam_GCR
LARS	51520	genome.wustl.edu	37	5	145509639	145509639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020117.9	-1	reviewed	p.L857R	1.000	170	0%	156	28.8%	49	38.7%	benign(0.05)	deleterious(0)	neutral(0.448)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1
LARS	51520	genome.wustl.edu	37	5	145543886	145543886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020117.9	-1	reviewed	p.R194I	0.999	329	0%	279	35.1%	8	25%	benign(0.281)	tolerated(0.18)	neutral(0.142)	superfamily_Nucleotidylyl transferase
LARS	51520	genome.wustl.edu	37	5	145551522	145551522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020117.9	-1	reviewed	p.K82T	0.995	246	0%	181	33.1%	10	60%	possibly_damaging(0.863)	tolerated(0.08)	deleterious(0.633)	superfamily_Nucleotidylyl transferase
POU4F3	5459	genome.wustl.edu	37	5	145719162	145719162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002700.2	+1	reviewed	p.E58K	1.000	152	0%	164	32.3%	0	-	possibly_damaging(0.626)	deleterious(0)	deleterious(0.662)	NULL
PPP2R2B	5521	genome.wustl.edu	37	5	145972564	145972564	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181676.2	-1	reviewed	p.K344T	1.000	588	0%	497	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
PPP2R2B	5521	genome.wustl.edu	37	5	145979872	145979872	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000512984	-1	known	p.A23V	1.000	210	0.5%	152	29.6%	0	-	-	-	-	NULL
PPP2R2B	5521	genome.wustl.edu	37	5	146077636	146077636	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181676.2	-1	reviewed	p.F83	1.000	206	0.5%	151	35.8%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_PR55_1,HMMPfam_PP2A_B_N
DPYSL3	1809	genome.wustl.edu	37	5	146773637	146773637	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001387.2	-1	validated	p.A558	0.542	72	0%	66	39.4%	30	6.6%	-	-	-	NULL
DPYSL3	1809	genome.wustl.edu	37	5	146778727	146778727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001387.2	-1	validated	p.R400I	1.000	218	0%	167	24%	28	0%	possibly_damaging(0.697)	tolerated(0.06)	deleterious(0.573)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP2	9832	genome.wustl.edu	37	5	147024553	147024553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014790.3	-1	provisional	p.R315C	1.000	159	0%	137	33.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147028027	147028027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014790.3	-1	provisional	p.R283I	1.000	158	0%	111	31.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPINK1	6690	genome.wustl.edu	37	5	147211104	147211104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003122.3	-1	reviewed	p.A13T	0.511	157	0%	119	24.4%	20	0%	benign(0.316)	tolerated(0.07)	neutral(0.418)	NULL
FBXO38	81545	genome.wustl.edu	37	5	147774456	147774456	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205836.1	+1	validated	p.C39*	1.000	248	0%	214	27.6%	3	0%	-	-	-	HMMPfam_F-box,superfamily_F-box domain
HTR4	3360	genome.wustl.edu	37	5	147902800	147902800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040173.2	-1	reviewed	p.L155I	1.000	201	0%	166	28.3%	0	-	benign(0.33)	tolerated(0.87)	neutral(0.104)	HMMPfam_7tm_1,superfamily_SSF81321
SH3TC2	79628	genome.wustl.edu	37	5	148386693	148386693	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000502274	-1	known	p.Q4	0.000	85	0%	88	10.2%	0	-	-	-	-	NULL
SH3TC2	79628	genome.wustl.edu	37	5	148411122	148411122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024577.3	-1	reviewed	p.R377Q	1.000	186	0%	173	28.3%	0	-	benign(0.006)	tolerated(0.23)	neutral(0.042)	NULL
ABLIM3	22885	genome.wustl.edu	37	5	148577948	148577948	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014945.2	+1	validated	p.F106	0.800	97	0%	60	26.7%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ABLIM3	22885	genome.wustl.edu	37	5	148622095	148622095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014945.2	+1	validated	p.R449W	0.964	152	0%	122	27.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PCYOX1L	78991	genome.wustl.edu	37	5	148746943	148746943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024028.3	+1	validated	p.A235T	0.963	58	0%	57	45.6%	13	69.2%	benign(0.009)	tolerated(0.35)	neutral(0.021)	HMMPfam_Prenylcys_lyase,superfamily_FAD/NAD(P)-binding domain
CSNK1A1	1452	genome.wustl.edu	37	5	148897434	148897434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025105.1	-1	validated	p.E155*	1.000	29	0%	35	22.9%	1	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
ARHGEF37	389337	genome.wustl.edu	37	5	148989227	148989227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001669.2	+1	validated	p.R143W	0.975	42	0%	58	39.7%	3	66.6%	possibly_damaging(0.819)	deleterious(0.02)	deleterious(0.693)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ARSI	340075	genome.wustl.edu	37	5	149677186	149677186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012301.2	-1	validated	p.G434D	0.997	33	0%	15	26.7%	10	0%	benign(0.075)	tolerated(0.28)	neutral(0.036)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
TCOF1	6949	genome.wustl.edu	37	5	149747466	149747466	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135243.1	+1	reviewed	p.K122Q	0.929	41	0%	54	33.3%	12	33.3%	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
CCDC69	26112	genome.wustl.edu	37	5	150581184	150581184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015621.2	-1	validated	p.L64F	0.998	100	0%	65	38.5%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
SLC36A3	285641	genome.wustl.edu	37	5	150664231	150664231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145017.1	-1	validated	p.W291C	1.000	112	0%	109	22.9%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Aa_trans
SLC36A2	153201	genome.wustl.edu	37	5	150701677	150701677	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181776.2	-1	validated	p.I370	0.605	120	0%	109	28.4%	0	-	-	-	-	HMMPfam_Aa_trans
FAT2	2196	genome.wustl.edu	37	5	150901228	150901228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001447.2	-1	reviewed	p.E3642D	1.000	80	0%	77	29.9%	8	37.5%	probably_damaging(0.999)	tolerated(0.43)	deleterious(0.504)	superfamily_Concanavalin A-like lectins/glucanases
FAT2	2196	genome.wustl.edu	37	5	150946206	150946206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001447.2	-1	reviewed	p.F763V	1.000	101	0%	69	30.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SPARC	6678	genome.wustl.edu	37	5	151049227	151049227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003118.2	-1	provisional	p.K150R	1.000	76	0%	53	30.2%	1284	0%	possibly_damaging(0.783)	tolerated(0.15)	deleterious(0.534)	superfamily_Kazal-type serine protease inhibitors
G3BP1	10146	genome.wustl.edu	37	5	151169966	151169966	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005754.2	+1	reviewed	e2+1	1.000	96	0%	93	37.6%	0	-	-	-	-	-
G3BP1	10146	genome.wustl.edu	37	5	151183555	151183555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005754.2	+1	reviewed	p.R435Q	1.000	92	0%	94	34%	118	10.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_RNA-binding domain RBD
GRIA1	2890	genome.wustl.edu	37	5	153026596	153026596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000827.3	+1	reviewed	p.T110M	1.000	419	0%	360	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRIA1	2890	genome.wustl.edu	37	5	153181968	153181968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000827.3	+1	reviewed	p.L813R	1.000	157	0%	199	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan
FAM114A2	10827	genome.wustl.edu	37	5	153390872	153390872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018691.2	-1	validated	p.D308Y	1.000	233	0%	186	26.9%	5	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
FAM114A2	10827	genome.wustl.edu	37	5	153413922	153413922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018691.2	-1	validated	p.D76Y	0.003	133	0%	123	32.5%	8	12.5%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
FAM114A2	10827	genome.wustl.edu	37	5	153414359	153414359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018691.2	-1	validated	p.R52I	1.000	309	0%	250	24.8%	5	0%	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	NULL
HAND1	9421	genome.wustl.edu	37	5	153857264	153857264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004821.2	-1	reviewed	p.K102T	1.000	45	0%	27	18.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
LARP1	23367	genome.wustl.edu	37	5	154173258	154173258	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015315.3	+1	validated	p.I204	0.019	205	4.4%	155	11.6%	18	16.6%	-	-	-	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154296726	154296726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015465.3	-1	validated	p.F563V	1.000	107	0%	85	38.8%	4	25%	possibly_damaging(0.856)	deleterious(0.04)	deleterious(0.679)	HMMSmart_SM00320,superfamily_WD40 repeat-like
KIF4B	285643	genome.wustl.edu	37	5	154393628	154393628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099293.1	+1	provisional	p.A70V	0.205	122	0%	121	42.1%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF4B	285643	genome.wustl.edu	37	5	154393870	154393870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099293.1	+1	provisional	p.L151I	0.981	316	0%	290	28.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF4B	285643	genome.wustl.edu	37	5	154395564	154395564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099293.1	+1	provisional	p.K715N	1.000	189	0%	200	15.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
KIF4B	285643	genome.wustl.edu	37	5	154395757	154395757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099293.1	+1	provisional	p.Q780K	1.000	113	0%	107	30.8%	0	-	possibly_damaging(0.637)	tolerated(0.32)	neutral(0.247)	NULL
KIF4B	285643	genome.wustl.edu	37	5	154396141	154396141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099293.1	+1	provisional	p.H908N	0.835	184	0%	215	23.3%	0	-	possibly_damaging(0.677)	tolerated(0.18)	neutral(0.297)	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156742096	156742096	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037332.2	+1	validated	p.F450	0.994	60	0%	52	28.8%	11	27.2%	-	-	-	HMMPfam_FragX_IP
CYFIP2	26999	genome.wustl.edu	37	5	156816394	156816394	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037332.2	+1	validated	p.F1135	0.460	39	0%	38	31.6%	36	38.8%	-	-	-	HMMPfam_FragX_IP
NIPAL4	348938	genome.wustl.edu	37	5	156890336	156890336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099287.1	+1	reviewed	p.R153Q	0.993	45	0%	47	25.5%	0	-	unknown(0)	-	-	HMMPfam_DUF803
ADAM19	8728	genome.wustl.edu	37	5	156946858	156946858	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033274.2	-1	reviewed	p.R197*	0.042	183	0%	171	28.1%	5	0%	-	-	-	NULL
LSM11	134353	genome.wustl.edu	37	5	157178487	157178487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173491.2	+1	provisional	p.R180W	1.000	224	0%	184	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Sm_like_riboprot
TTC1	7265	genome.wustl.edu	37	5	159463770	159463770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003314.1	+1	provisional	p.S155L	0.979	194	0%	136	27.2%	45	40%	possibly_damaging(0.872)	deleterious(0)	deleterious(0.784)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TTC1	7265	genome.wustl.edu	37	5	159492045	159492045	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003314.1	+1	provisional	p.F284	1.000	112	0%	66	22.7%	75	32%	-	-	-	NULL
FABP6	2172	genome.wustl.edu	37	5	159659125	159659125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040442.1	+1	reviewed	p.E79K	0.997	71	0%	55	38.2%	1	0%	possibly_damaging(0.474)	tolerated(0.83)	neutral(0.157)	HMMPfam_Lipocalin,superfamily_Calycin
LOC727947	727947	genome.wustl.edu	37	5	159685548	159685548	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001126641.2	+1	model	p.E97*	0.974	264	0%	253	26.1%	1	0%	-	-	-	HMMPfam_UCR_14kD,superfamily_14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SLU7	10569	genome.wustl.edu	37	5	159831875	159831875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006425.4	-1	reviewed	p.C469G	0.000	111	0%	91	31.9%	16	25%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ATP10B	23120	genome.wustl.edu	37	5	160039804	160039804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025153.2	-1	validated	p.S928P	1.000	59	0%	51	25.5%	0	-	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	superfamily_HAD-like
ATP10B	23120	genome.wustl.edu	37	5	160047853	160047853	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025153.2	-1	validated	p.S639	0.986	346	0%	273	25.3%	3	0%	-	-	-	superfamily_HAD-like
ATP10B	23120	genome.wustl.edu	37	5	160059358	160059358	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025153.2	-1	validated	p.T466	0.996	141	0%	130	31.5%	0	-	-	-	-	superfamily_HAD-like
ATP10B	23120	genome.wustl.edu	37	5	160067517	160067517	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025153.2	-1	validated	p.I317	1.000	102	1%	127	34.6%	2	0%	-	-	-	HMMPfam_E1-E2_ATPase
ATP10B	23120	genome.wustl.edu	37	5	160113175	160113175	+	Silent	SNP	G	G	A	rs190770337	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025153.2	-1	validated	p.F127	0.021	71	0%	67	35.8%	0	-	-	-	-	HMMPfam_E1-E2_ATPase
GABRB2	2561	genome.wustl.edu	37	5	160753387	160753387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021911.2	-1	reviewed	p.F393L	1.000	170	0%	155	29%	0	-	unknown(0)	tolerated(0.67)	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRB2	2561	genome.wustl.edu	37	5	160761872	160761872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021911.2	-1	reviewed	p.R240I	1.000	202	0.5%	117	28.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA6	2559	genome.wustl.edu	37	5	161116043	161116043	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000811.2	+1	reviewed	p.N105T	1.000	271	0%	240	31.7%	0	-	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRA1	2554	genome.wustl.edu	37	5	161324356	161324356	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000806.5	+1	reviewed	p.I433	1.000	338	0%	260	12.7%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRG2	2566	genome.wustl.edu	37	5	161524709	161524709	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198903.2	+1	reviewed	p.T131	0.998	291	0%	229	29.7%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRG2	2566	genome.wustl.edu	37	5	161576213	161576213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198903.2	+1	reviewed	p.V381A	1.000	135	0%	120	26.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
CCNG1	900	genome.wustl.edu	37	5	162866369	162866369	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004060.3	+1	reviewed	p.L36R	0.999	134	0%	99	30.3%	74	47.2%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Cyclin_N,superfamily_Cyclin-like
HMMR	3161	genome.wustl.edu	37	5	162896681	162896681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142556.1	+1	reviewed	p.D103G	0.999	136	0%	119	27.7%	5	60%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
HMMR	3161	genome.wustl.edu	37	5	162900563	162900563	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142556.1	+1	reviewed	p.E302*	1.000	135	0%	110	34.5%	1	0%	-	-	-	NULL
ODZ2	57451	genome.wustl.edu	37	5	167419970	167419970	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122679.1	+1	inferred	p.S323	0.995	309	0.3%	206	30.6%	0	-	-	-	-	HMMPfam_Ten_N
ODZ2	57451	genome.wustl.edu	37	5	167674406	167674406	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122679.1	+1	inferred	p.F2145	0.980	130	0%	130	31.5%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167674778	167674778	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122679.1	+1	inferred	p.F2269	0.320	74	0%	95	33.7%	0	-	-	-	-	NULL
WWC1	23286	genome.wustl.edu	37	5	167855774	167855774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015238.2	+1	reviewed	p.R661Q	0.981	139	0%	101	34.7%	49	42.8%	benign(0)	tolerated(1)	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PANK3	79646	genome.wustl.edu	37	5	167995656	167995656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024594.2	-1	reviewed	p.R126C	1.000	93	0%	89	30.3%	9	55.5%	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	HMMPfam_Fumble,superfamily_SSF53067
ENSG00000233913	0	genome.wustl.edu	37	5	168043530	168043530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000421908	+1	known	p.E58D	1.000	534	0%	558	13.1%	415	0%	-	-	-	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e
SLIT3	6586	genome.wustl.edu	37	5	168149939	168149939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003062.2	-1	validated	p.L804M	0.995	63	0%	60	26.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00368,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
SLIT3	6586	genome.wustl.edu	37	5	168233566	168233566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003062.2	-1	validated	p.N274D	1.000	110	0%	80	25%	4	0%	benign(0.011)	tolerated(0.61)	neutral(0.005)	superfamily_L domain-like
SLIT3	6586	genome.wustl.edu	37	5	168250266	168250266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003062.2	-1	validated	p.L210M	0.715	272	0%	265	31.3%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00368,superfamily_L domain-like
CCDC99	54908	genome.wustl.edu	37	5	169018168	169018168	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017785.4	+1	validated	p.E92	0.973	157	0%	151	23.2%	4	50%	-	-	-	NULL
CCDC99	54908	genome.wustl.edu	37	5	169025479	169025479	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017785.4	+1	validated	e8-1	0.997	167	0%	155	25.8%	0	-	-	-	-	-
DOCK2	1794	genome.wustl.edu	37	5	169116255	169116255	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004946.2	+1	validated	e9-1	1.000	59	0%	64	31.2%	0	-	-	-	-	-
DOCK2	1794	genome.wustl.edu	37	5	169468078	169468078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004946.2	+1	validated	p.D1229N	1.000	78	0%	72	31.9%	5	0%	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	NULL
LCP2	3937	genome.wustl.edu	37	5	169689734	169689734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005565.3	-1	reviewed	p.E277D	0.392	96	0%	81	30.9%	16	0%	benign(0.109)	tolerated(0.1)	neutral(0.295)	NULL
FGF18	8817	genome.wustl.edu	37	5	170876179	170876179	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003862.1	+1	reviewed	p.F93	1.000	216	0%	199	28.1%	50	36%	-	-	-	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
UBTD2	92181	genome.wustl.edu	37	5	171639034	171639034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152277.2	-1	validated	p.R169C	1.000	299	0%	237	29.5%	15	26.6%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
BNIP1	662	genome.wustl.edu	37	5	172581346	172581346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013979.2	+1	reviewed	p.E110K	1.000	77	0%	70	25.7%	5	20%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
NKX2-5	1482	genome.wustl.edu	37	5	172659648	172659648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004387.3	-1	reviewed	p.L300S	1.000	32	0%	24	29.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC100127922	100127922	genome.wustl.edu	37	5	173988788	173988788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342573.1	+1	model	p.E48K	0.840	32	0%	40	30%	2	0%	-	-	-	superfamily_Ubiquitin-like
MSX2	4488	genome.wustl.edu	37	5	174156169	174156169	+	Missense_Mutation	SNP	G	G	A	rs186769394	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002449.4	+1	reviewed	p.M129I	1.000	118	0%	146	26.7%	17	41.1%	benign(0.001)	tolerated(0.07)	neutral(0.319)	superfamily_Homeodomain-like
DRD1	1812	genome.wustl.edu	37	5	174868998	174868998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000794.3	-1	reviewed	p.A369T	0.996	122	0%	110	21.8%	0	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
HRH2	3274	genome.wustl.edu	37	5	175110474	175110474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001131055.1	+1	reviewed	p.L80M	1.000	311	0%	274	31.4%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_7tm_1,superfamily_SSF81321
FAM153B	202134	genome.wustl.edu	37	5	175528585	175528585	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079529.2	+1	validated	e12+1	0.004	163	0%	151	15.2%	0	-	-	-	-	-
C5orf25	375484	genome.wustl.edu	37	5	175763857	175763857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198567.4	+1	validated	p.S335Y	0.990	105	0%	121	32.2%	3	0%	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	NULL
CDHR2	54825	genome.wustl.edu	37	5	176011830	176011830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017675.4	+1	reviewed	p.L850I	0.000	44	0%	48	33.3%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
GPRIN1	114787	genome.wustl.edu	37	5	176025561	176025561	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052899.2	-1	validated	p.D425E	0.000	106	0%	72	25%	14	42.8%	benign(0.017)	tolerated(1)	neutral(0.001)	NULL
FGFR4	2264	genome.wustl.edu	37	5	176517964	176517964	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002011.3	+1	reviewed	p.R154	1.000	298	0.3%	177	31.6%	3	33.3%	-	-	-	HMMPfam_I-set,superfamily_Immunoglobulin
NSD1	64324	genome.wustl.edu	37	5	176562916	176562916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022455.4	+1	reviewed	p.L271S	1.000	163	0%	139	36%	0	-	benign(0.08)	deleterious(0)	neutral(0.450)	NULL
NSD1	64324	genome.wustl.edu	37	5	176631233	176631233	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022455.4	+1	reviewed	p.F392	0.999	288	0%	237	31.6%	1	100%	-	-	-	HMMPfam_PWWP,superfamily_Tudor/PWWP/MBT
NSD1	64324	genome.wustl.edu	37	5	176638935	176638935	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022455.4	+1	reviewed	p.E1179*	1.000	181	0%	161	25.5%	0	-	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176721858	176721858	+	Missense_Mutation	SNP	C	C	A	rs6877852		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022455.4	+1	reviewed	p.L2497M	0.991	137	0%	170	38.2%	8	37.5%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
PRELID1	27166	genome.wustl.edu	37	5	176732931	176732931	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000503853	+1	known	p.P75S	1.000	36	0%	42	11.9%	415	36.3%	-	-	-	HMMPfam_PRELI
RGS14	10636	genome.wustl.edu	37	5	176793192	176793192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006480.4	+1	reviewed	p.T28A	0.035	22	0%	21	38.1%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
SLC34A1	6569	genome.wustl.edu	37	5	176813304	176813304	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003052.4	+1	reviewed	p.F114	0.949	81	0%	94	28.7%	1	100%	-	-	-	HMMPfam_Na_Pi_cotrans
SLC34A1	6569	genome.wustl.edu	37	5	176825280	176825280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003052.4	+1	reviewed	p.R638H	0.674	30	0%	32	31.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM193B	54540	genome.wustl.edu	37	5	176948999	176948999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019057.3	-1	validated	p.T783A	1.000	38	0%	46	37%	10	60%	benign(0.017)	tolerated(0.32)	neutral(0.025)	NULL
LOC202181	202181	genome.wustl.edu	37	5	177059582	177059582	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_026921.1	-1	predicted	NULL	0.531	227	0%	239	26.8%	0	-	-	-	-	-
N4BP3	23138	genome.wustl.edu	37	5	177547466	177547466	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015111.1	+1	validated	p.S206	0.999	43	0%	30	26.7%	6	16.6%	-	-	-	NULL
CLK4	57396	genome.wustl.edu	37	5	178040601	178040601	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020666.2	-1	reviewed	p.G233	1.000	121	0%	103	35%	7	42.8%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CLK4	57396	genome.wustl.edu	37	5	178045656	178045656	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020666.2	-1	reviewed	p.S95	0.958	169	0%	121	31.4%	10	20%	-	-	-	NULL
ZNF354A	6940	genome.wustl.edu	37	5	178139250	178139250	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005649.2	-1	validated	p.I543M	0.997	278	0%	265	28.7%	8	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354A	6940	genome.wustl.edu	37	5	178140480	178140480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005649.2	-1	validated	p.E133D	0.742	354	0%	329	32.5%	9	11.1%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ZNF354B	117608	genome.wustl.edu	37	5	178309920	178309920	+	Missense_Mutation	SNP	G	G	T	rs78975259		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058230.2	+1	validated	p.R156I	0.000	138	0%	134	25.4%	0	-	possibly_damaging(0.634)	deleterious(0.01)	deleterious(0.628)	NULL
ZNF354B	117608	genome.wustl.edu	37	5	178310658	178310658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058230.2	+1	validated	p.R402I	1.000	239	0%	220	20%	5	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354B	117608	genome.wustl.edu	37	5	178310945	178310945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058230.2	+1	validated	p.E498K	0.001	207	1%	188	27.1%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF454	285676	genome.wustl.edu	37	5	178392532	178392532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182594.2	+1	validated	p.R376I	1.000	179	0%	205	25.4%	0	-	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178392784	178392784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182594.2	+1	validated	p.R460K	1.000	244	0%	282	39.7%	0	-	possibly_damaging(0.836)	tolerated(0.12)	deleterious(0.580)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GRM6	2916	genome.wustl.edu	37	5	178410202	178410202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000843.3	-1	reviewed	p.W715C	1.000	35	0%	28	21.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
GRM6	2916	genome.wustl.edu	37	5	178416330	178416330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000843.3	-1	reviewed	p.E363D	1.000	102	0%	71	28.2%	0	-	benign(0)	tolerated(0.98)	-	HMMPfam_ANF_receptor,superfamily_SSF53822
ZNF879	345462	genome.wustl.edu	37	5	178460040	178460040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136116.1	+1	provisional	p.R364Q	0.939	19	0%	33	39.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF354C	30832	genome.wustl.edu	37	5	178506143	178506143	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014594.1	+1	provisional	p.I237S	0.998	138	0%	121	29.8%	1	0%	possibly_damaging(0.777)	tolerated(0.06)	deleterious(0.613)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354C	30832	genome.wustl.edu	37	5	178506542	178506542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014594.1	+1	provisional	p.S370Y	0.091	321	0%	315	31.7%	0	-	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ADAMTS2	9509	genome.wustl.edu	37	5	178541079	178541079	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014244.2	-1	reviewed	p.V1142D	0.002	200	0%	176	31.8%	16	0%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
C5orf45	51149	genome.wustl.edu	37	5	179269057	179269057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016175.3	-1	validated	p.S100L	0.000	202	0%	175	27.4%	11	54.5%	possibly_damaging(0.832)	tolerated(0.08)	deleterious(0.617)	NULL
TBC1D9B	23061	genome.wustl.edu	37	5	179297289	179297289	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198868.2	-1	validated	p.S897	0.000	43	0%	26	42.3%	41	48.7%	-	-	-	HMMPfam_efhand,superfamily_EF-hand
GFPT2	9945	genome.wustl.edu	37	5	179751873	179751873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005110.2	-1	provisional	p.G207R	1.000	95	0%	100	26%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GATase_2,superfamily_SSF56235
OR2V1	26693	genome.wustl.edu	37	5	180551592	180551592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000329365	-1	known	p.A238D	1.000	153	0%	142	30.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
OR2V2	285659	genome.wustl.edu	37	5	180582032	180582032	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206880.1	+1	provisional	p.S30	0.001	445	0%	462	28.4%	0	-	-	-	-	superfamily_SSF81321
TRIM7	81786	genome.wustl.edu	37	5	180625734	180625734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203293.1	-1	reviewed	p.S315Y	1.000	82	0%	77	24.7%	4	100%	probably_damaging(0.959)	tolerated(0.07)	deleterious(0.722)	NULL
TRIM41	90933	genome.wustl.edu	37	5	180651586	180651586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033549.3	+1	validated	p.R196H	0.990	71	0%	73	27.4%	6	16.6%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	superfamily_RING/U-box
FOXF2	2295	genome.wustl.edu	37	6	1390653	1390653	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001452.1	+1	reviewed	p.C157	1.000	60	0%	48	27.1%	3	0%	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
FOXF2	2295	genome.wustl.edu	37	6	1394947	1394947	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001452.1	+1	reviewed	p.Y396*	1.000	141	0%	109	36.7%	1	0%	-	-	-	NULL
GMDS	2762	genome.wustl.edu	37	6	1742738	1742738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001500.2	-1	validated	p.V285G	1.000	140	0%	133	35.3%	171	44.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_NAD(P)-bd
GMDS	2762	genome.wustl.edu	37	6	2117747	2117747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001500.2	-1	validated	p.R64Q	1.000	195	0.5%	164	32.3%	90	43.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Epimerase,superfamily_NAD(P)-bd
SERPINB9	5272	genome.wustl.edu	37	6	2890726	2890726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004155.4	-1	validated	p.L268I	0.000	267	0%	258	38%	11	36.3%	benign(0.025)	tolerated(0.33)	neutral(0.025)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB9	5272	genome.wustl.edu	37	6	2896399	2896399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004155.4	-1	validated	p.D65G	0.820	364	0%	272	29.8%	11	18.1%	benign(0.128)	tolerated(0.07)	neutral(0.330)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
PRPF4B	8899	genome.wustl.edu	37	6	4032372	4032372	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003913.4	+1	reviewed	p.I207	0.040	536	0%	569	33.2%	5	80%	-	-	-	NULL
FAM217A	222826	genome.wustl.edu	37	6	4069085	4069085	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173563.1	-1	predicted	p.E458*	0.996	183	0%	162	35.8%	0	-	-	-	-	NULL
FAM217A	222826	genome.wustl.edu	37	6	4069255	4069255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173563.1	-1	predicted	p.K401T	0.222	229	0%	194	27.3%	0	-	possibly_damaging(0.836)	deleterious(0.02)	deleterious(0.703)	NULL
FAM217A	222826	genome.wustl.edu	37	6	4069866	4069866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173563.1	-1	predicted	p.E197D	0.998	178	0%	135	30.4%	0	-	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	NULL
CDYL	9425	genome.wustl.edu	37	6	4935869	4935869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004824.3	+1	reviewed	p.D271G	1.000	193	0%	155	31%	14	35.7%	possibly_damaging(0.797)	deleterious(0.02)	deleterious(0.682)	NULL
LYRM4	57128	genome.wustl.edu	37	6	5216859	5216859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020408.4	-1	validated	p.R67C	0.997	379	0%	323	30.7%	73	23.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Complex1_LYR
F13A1	2162	genome.wustl.edu	37	6	6222306	6222306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000129.3	-1	reviewed	p.D358Y	0.977	125	0%	107	26.2%	0	-	benign(0.029)	deleterious(0.01)	neutral(0.407)	HMMPfam_Transglut_core,HMMSmart_TGc,superfamily_SSF54001
CAGE1	285782	genome.wustl.edu	37	6	7355322	7355322	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205864.2	-1	validated	p.I576S	0.872	164	0%	145	27.6%	0	-	benign(0.429)	tolerated(0.06)	neutral(0.462)	NULL
CAGE1	285782	genome.wustl.edu	37	6	7373437	7373437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205864.2	-1	validated	p.E403K	0.000	58	0%	61	31.1%	0	-	possibly_damaging(0.478)	tolerated(0.32)	neutral(0.182)	NULL
RIOK1	83732	genome.wustl.edu	37	6	7411641	7411641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031480.2	+1	reviewed	p.K449T	0.890	115	0%	108	35.2%	23	21.7%	benign(0.119)	tolerated(0.24)	neutral(0.047)	NULL
DSP	1832	genome.wustl.edu	37	6	7569527	7569527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004415.2	+1	reviewed	p.L510M	0.994	105	0%	68	42.6%	20	65%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Spectrin repeat
DSP	1832	genome.wustl.edu	37	6	7581493	7581493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004415.2	+1	reviewed	p.E1690D	1.000	188	0%	228	33.3%	21	76.1%	possibly_damaging(0.945)	tolerated(0.1)	deleterious(0.676)	superfamily_Prefoldin
DSP	1832	genome.wustl.edu	37	6	7583290	7583290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004415.2	+1	reviewed	p.R1932H	0.780	166	0%	192	26%	53	35.8%	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	NULL
DSP	1832	genome.wustl.edu	37	6	7583910	7583910	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004415.2	+1	reviewed	p.N2139H	0.997	168	0%	145	32.4%	66	22.7%	probably_damaging(0.961)	tolerated(0.55)	neutral(0.411)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
DSP	1832	genome.wustl.edu	37	6	7584921	7584921	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004415.2	+1	reviewed	p.E2476*	1.000	231	0%	235	27.7%	118	33%	-	-	-	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
DSP	1832	genome.wustl.edu	37	6	7585433	7585433	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004415.2	+1	reviewed	p.T2646	0.001	209	0%	226	27.4%	155	27%	-	-	-	HMMSmart_SM00250,superfamily_Plakin repeat
TXNDC5	81567	genome.wustl.edu	37	6	7883469	7883469	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030810.2	-1	reviewed	p.R403*	1.000	121	0%	102	22.5%	82	30.4%	-	-	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
MUTED	63915	genome.wustl.edu	37	6	8041477	8041477	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201280.1	-1	reviewed	p.R74*	1.000	207	0%	222	32%	7	42.8%	-	-	-	NULL
TFAP2A	7020	genome.wustl.edu	37	6	10400727	10400727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003220.2	-1	reviewed	p.D327N	1.000	181	0%	188	27.7%	17	11.7%	benign(0.313)	tolerated(0.12)	neutral(0.358)	HMMPfam_TF_AP-2
TFAP2A	7020	genome.wustl.edu	37	6	10402840	10402840	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000475264	-1	known	p.R161Q	0.998	109	0%	89	73%	14	100%	-	-	-	HMMPfam_TF_AP-2
GCNT2	2651	genome.wustl.edu	37	6	10529340	10529340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145649.4	+1	reviewed	p.K66E	0.992	344	0%	299	29.1%	1	0%	benign(0.018)	tolerated(1)	neutral(0.001)	NULL
GCM2	9247	genome.wustl.edu	37	6	10876135	10876135	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004752.3	-1	reviewed	p.R191*	0.009	120	0.8%	121	28.9%	0	-	-	-	-	NULL
SYCP2L	221711	genome.wustl.edu	37	6	10913099	10913099	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040274.2	+1	validated	e14-1	0.968	180	0%	176	31.2%	0	-	-	-	-	-
HIVEP1	3096	genome.wustl.edu	37	6	12120750	12120750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002114.2	+1	validated	p.M241T	0.000	441	0%	498	32.7%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12122914	12122914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002114.2	+1	validated	p.E962D	1.000	239	0%	255	21.2%	0	-	probably_damaging(0.991)	tolerated(0.22)	deleterious(0.486)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PHACTR1	221692	genome.wustl.edu	37	6	13053675	13053675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030948.1	+1	validated	p.R110I	1.000	43	0%	52	36.5%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
PHACTR1	221692	genome.wustl.edu	37	6	13283791	13283791	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000415087	+1	known	p.T384I	1.000	79	0%	52	32.7%	2	0%	-	-	-	NULL
JARID2	3720	genome.wustl.edu	37	6	15452403	15452403	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004973.2	+1	reviewed	p.R164*	1.000	212	0%	169	34.3%	6	33.3%	-	-	-	NULL
CAP2	10486	genome.wustl.edu	37	6	17421790	17421790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006366.2	+1	reviewed	p.A2T	0.999	170	0%	137	29.2%	1	100%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
NUP153	9972	genome.wustl.edu	37	6	17629507	17629507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005124.2	-1	reviewed	p.D975Y	1.000	217	0%	176	27.3%	10	40%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
KIF13A	63971	genome.wustl.edu	37	6	17764737	17764737	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022113.4	-1	validated	p.A1674	1.000	77	0%	88	31.8%	16	6.2%	-	-	-	NULL
KIF13A	63971	genome.wustl.edu	37	6	17781109	17781109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022113.4	-1	validated	p.S1233L	1.000	127	0%	106	30.2%	2	50%	possibly_damaging(0.614)	deleterious(0)	deleterious(0.657)	NULL
KIF13A	63971	genome.wustl.edu	37	6	17828565	17828565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022113.4	-1	validated	p.I480V	1.000	37	0%	40	27.5%	2	50%	possibly_damaging(0.526)	deleterious(0.03)	deleterious(0.542)	HMMPfam_FHA,superfamily_SMAD/FHA domain
TPMT	7172	genome.wustl.edu	37	6	18143901	18143901	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000367.2	-1	reviewed	p.E98*	1.000	137	0%	96	40.6%	20	0%	-	-	-	HMMPfam_TPMT,superfamily_SSF53335
KDM1B	221656	genome.wustl.edu	37	6	18207661	18207661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153042.3	+1	validated	p.F332L	1.000	211	0%	180	30.6%	9	77.7%	benign(0.428)	tolerated(0.48)	neutral(0.150)	HMMPfam_Amino_oxidase,superfamily_SSF51905
DEK	7913	genome.wustl.edu	37	6	18249894	18249894	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003472.3	-1	reviewed	p.E250D	1.000	80	0%	75	22.7%	38	44.7%	unknown(0)	tolerated(0.05)	-	NULL
GPLD1	2822	genome.wustl.edu	37	6	24448137	24448137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001503.2	-1	reviewed	p.A549V	0.996	102	0%	87	31%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_FG-GAP,HMMSmart_SM00191
GPLD1	2822	genome.wustl.edu	37	6	24448419	24448419	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001503.2	-1	reviewed	p.Y488*	1.000	74	0%	82	34.1%	1	0%	-	-	-	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ALDH5A1	7915	genome.wustl.edu	37	6	24523149	24523149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170740.1	+1	reviewed	p.E403G	1.000	109	0%	100	25%	6	33.3%	possibly_damaging(0.81)	tolerated(0.09)	deleterious(0.601)	HMMPfam_Aldedh,superfamily_ALDH-like
KIAA0319	9856	genome.wustl.edu	37	6	24570151	24570151	+	Missense_Mutation	SNP	G	G	T	rs41271797	byCluster;byFrequency	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014809.3	-1	reviewed	p.F657L	0.866	94	0%	83	33.7%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMSmart_SM00089,superfamily_PKD domain,HMMSmart_SM00060
KIAA0319	9856	genome.wustl.edu	37	6	24578458	24578458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014809.3	-1	reviewed	p.D462A	0.996	364	0%	278	28.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00089,superfamily_PKD domain,HMMSmart_SM00060
ACOT13	55856	genome.wustl.edu	37	6	24701706	24701706	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018473.3	+1	reviewed	p.L96I	0.651	202	0%	178	29.8%	96	29.1%	benign(0.005)	tolerated(0.67)	neutral(0.003)	HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase
FAM65B	9750	genome.wustl.edu	37	6	24843451	24843451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014722.2	-1	validated	p.R520H	0.006	141	0%	167	24.6%	0	-	possibly_damaging(0.598)	tolerated(0.12)	neutral(0.468)	NULL
FAM65B	9750	genome.wustl.edu	37	6	24861222	24861222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014722.2	-1	validated	p.E203Q	1.000	20	0%	25	28%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25529042	25529042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017640.5	+1	validated	p.R663Q	0.999	32	0%	34	23.5%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
LRRC16A	55604	genome.wustl.edu	37	6	25551213	25551213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017640.5	+1	validated	p.D802Y	1.000	265	0%	222	12.6%	14	7.1%	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25600613	25600613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017640.5	+1	validated	p.S1064Y	1.000	215	0%	276	30.4%	4	75%	benign(0.03)	deleterious(0.03)	neutral(0.366)	NULL
HIST1H2AA	221613	genome.wustl.edu	37	6	25726524	25726524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170745.3	-1	reviewed	p.R78C	0.898	125	0%	148	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_H2A,HMMPfam_Histone,superfamily_Histone-fold
SLC17A1	6568	genome.wustl.edu	37	6	25826710	25826710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005074.3	-1	validated	p.K62N	0.000	313	0%	281	28.5%	0	-	benign(0.286)	tolerated(0.37)	neutral(0.107)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
TRIM38	10475	genome.wustl.edu	37	6	25972171	25972171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006355.2	+1	reviewed	p.E194D	0.977	116	0%	114	21.9%	6	50%	possibly_damaging(0.889)	deleterious(0.01)	deleterious(0.755)	NULL
HIST1H3D	8351	genome.wustl.edu	37	6	26197126	26197126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003530.3	-1	reviewed	p.V118A	1.000	85	0%	87	26.4%	3	66.6%	benign(0.058)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
HIST1H1D	3007	genome.wustl.edu	37	6	26234994	26234994	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005320.2	-1	reviewed	p.S56	1.000	116	0%	109	30.3%	0	-	-	-	-	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
HIST1H1D	3007	genome.wustl.edu	37	6	26234995	26234995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005320.2	-1	reviewed	p.S56T	0.996	115	0%	111	29.7%	0	-	benign(0.202)	tolerated(0.28)	neutral(0.051)	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
BTN3A2	11118	genome.wustl.edu	37	6	26370573	26370573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007047.3	+1	reviewed	p.E153K	0.000	151	0%	179	25.1%	7	14.2%	benign(0.066)	tolerated(0.57)	neutral(0.010)	HMMPfam_V-set,superfamily_SSF48726
BTN3A1	11119	genome.wustl.edu	37	6	26413521	26413521	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007048.5	+1	validated	p.H381Q	0.000	498	0%	440	24.8%	3	33.3%	benign(0)	tolerated(0.4)	neutral(0.016)	HMMSmart_SM00589
BTN2A1	11120	genome.wustl.edu	37	6	26465578	26465578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007049.2	+1	reviewed	p.A293V	0.001	316	0%	252	30.2%	11	36.3%	benign(0.208)	deleterious(0.02)	neutral(0.403)	NULL
FKSG83	387316	genome.wustl.edu	37	6	27293319	27293319	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032030.2	+1	validated	p.E86D	0.001	485	0%	403	30.3%	0	-	-	-	-	HMMPfam_V1R
ZSCAN16	80345	genome.wustl.edu	37	6	28093498	28093498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025231.1	+1	provisional	p.L93I	0.990	152	0%	185	29.2%	13	15.3%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_SCAN,HMMSmart_SCAN
ZKSCAN4	387032	genome.wustl.edu	37	6	28214772	28214772	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019110.3	-1	provisional	p.E251	0.348	154	0%	138	30.4%	1	0%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
PGBD1	84547	genome.wustl.edu	37	6	28269871	28269871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032507.3	+1	reviewed	p.S747L	0.822	221	0%	270	26.7%	1	0%	possibly_damaging(0.832)	tolerated(0.06)	deleterious(0.639)	NULL
ZNF323	64288	genome.wustl.edu	37	6	28297374	28297374	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135215.1	-1	validated	p.G29	0.000	194	0%	213	34.3%	2	50%	-	-	-	NULL
GPX6	257202	genome.wustl.edu	37	6	28483517	28483517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182701.1	-1	reviewed	p.F2L	0.035	96	0%	76	26.3%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28540708	28540708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052923.1	-1	provisional	p.Q986H	0.998	191	0%	154	29.2%	0	-	possibly_damaging(0.677)	tolerated(0.15)	deleterious(0.482)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28542702	28542702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052923.1	-1	provisional	p.P594S	0.000	100	0%	99	33.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28543525	28543525	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052923.1	-1	provisional	p.G319	1.000	228	0.4%	181	29.3%	0	-	-	-	-	NULL
TRIM27	5987	genome.wustl.edu	37	6	28889682	28889682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006510.4	-1	reviewed	p.R168Q	1.000	148	0%	141	43.3%	54	40.7%	benign(0.098)	tolerated(0.59)	neutral(0.012)	NULL
ZNF311	282890	genome.wustl.edu	37	6	28963338	28963338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010877.2	-1	provisional	p.R481C	0.080	160	0%	179	29.6%	0	-	probably_damaging(0.982)	tolerated(0.19)	deleterious(0.476)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF311	282890	genome.wustl.edu	37	6	28963661	28963661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010877.2	-1	provisional	p.S373F	0.001	130	0%	110	23.6%	0	-	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF311	282890	genome.wustl.edu	37	6	28963893	28963893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010877.2	-1	provisional	p.I296V	1.000	181	0%	174	36.8%	0	-	benign(0.199)	tolerated(0.12)	neutral(0.280)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF311	282890	genome.wustl.edu	37	6	28963989	28963989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010877.2	-1	provisional	p.L264I	0.000	160	0%	141	17.7%	0	-	benign(0.349)	tolerated(0.34)	neutral(0.134)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR2B3	442184	genome.wustl.edu	37	6	29054816	29054816	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005226.2	-1	validated	p.D70	0.827	153	0%	132	31.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR12D3	81797	genome.wustl.edu	37	6	29236413	29236413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000396806	-1	known	p.I258M	0.000	122	0%	92	33.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5V1	81696	genome.wustl.edu	37	6	29323695	29323695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030876.5	-1	validated	p.S93Y	0.979	385	0%	414	27.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR12D3	81797	genome.wustl.edu	37	6	29342156	29342156	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030959.2	-1	provisional	p.I303	0.000	390	0%	278	32%	0	-	-	-	-	superfamily_SSF81321
OR12D3	81797	genome.wustl.edu	37	6	29342287	29342287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030959.2	-1	provisional	p.R260C	0.000	257	0%	203	28.6%	0	-	benign(0.175)	tolerated(0.09)	neutral(0.312)	HMMPfam_7tm_1,superfamily_SSF81321
OR10C1	442194	genome.wustl.edu	37	6	29385442	29385442	+	Missense_Mutation	SNP	G	G	A	rs142512628	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000383554	+1	known	p.R129H	0.006	128	0%	118	32.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MAS1L	116511	genome.wustl.edu	37	6	29455226	29455226	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052967.1	-1	provisional	p.L152V	0.000	88	0%	99	43.4%	0	-	benign(0.073)	tolerated(0.7)	neutral(0.007)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GABBR1	2550	genome.wustl.edu	37	6	29574970	29574970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001470.2	-1	reviewed	p.G673D	1.000	117	0%	132	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
ZFP57	346171	genome.wustl.edu	37	6	29640336	29640336	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001109809.2	-1	reviewed	p.E498*	0.039	175	0%	194	28.4%	0	-	-	-	-	NULL
ZFP57	346171	genome.wustl.edu	37	6	29643801	29643801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001109809.2	-1	reviewed	p.F33L	0.996	482	0%	383	26.6%	0	-	probably_damaging(0.993)	tolerated(0.43)	neutral(0.464)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
HLA-G	3135	genome.wustl.edu	37	6	29795641	29795641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002127.5	+1	reviewed	p.R7Q	0.000	39	0%	35	22.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
TRIM31	11074	genome.wustl.edu	37	6	30080283	30080283	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007028.3	-1	reviewed	p.E100	0.058	241	0%	191	32.5%	10	0%	-	-	-	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_RING/U-box
TRIM40	135644	genome.wustl.edu	37	6	30113804	30113804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138700.3	+1	validated	p.K127E	0.801	122	0%	99	32.3%	0	-	possibly_damaging(0.907)	deleterious(0.02)	deleterious(0.744)	NULL
TRIM39	56658	genome.wustl.edu	37	6	30308067	30308067	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021253.3	+1	reviewed	p.F274	0.000	122	0%	134	33.6%	0	-	-	-	-	NULL
ABCF1	23	genome.wustl.edu	37	6	30548197	30548197	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025091.1	+1	reviewed	p.F193	1.000	110	0%	88	25%	13	23%	-	-	-	NULL
PPP1R10	5514	genome.wustl.edu	37	6	30572489	30572489	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002714.2	-1	reviewed	p.T326	0.675	421	0.2%	366	31.7%	13	38.4%	-	-	-	NULL
MRPS18B	28973	genome.wustl.edu	37	6	30587316	30587316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014046.3	+1	reviewed	p.S42Y	0.996	109	0%	113	28.3%	55	45.4%	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
DHX16	8449	genome.wustl.edu	37	6	30638595	30638595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003587.4	-1	reviewed	p.R194Q	0.853	134	0%	149	28.2%	9	44.4%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	NULL
DHX16	8449	genome.wustl.edu	37	6	30638708	30638708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003587.4	-1	reviewed	p.E156D	0.348	246	0%	218	32.6%	6	0%	unknown(0)	tolerated(0.23)	-	NULL
SFTA2	389376	genome.wustl.edu	37	6	30899293	30899293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205854.2	-1	validated	p.S70F	0.002	78	0%	65	32.3%	0	-	possibly_damaging(0.901)	tolerated(0.08)	deleterious(0.657)	NULL
MUC21	394263	genome.wustl.edu	37	6	30955899	30955899	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010909.2	+1	validated	p.S543	0.000	59	0%	42	23.8%	0	-	-	-	-	NULL
HLA-C	3107	genome.wustl.edu	37	6	31238020	31238020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002117.4	-1	reviewed	p.E288K	0.423	39	0%	43	16.3%	107	0%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
AIF1	199	genome.wustl.edu	37	6	31584662	31584662	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001623.3	+1	reviewed	p.I143	0.999	234	0%	306	28.4%	25	0%	-	-	-	NULL
ABHD16A	7920	genome.wustl.edu	37	6	31664804	31664804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021160.2	-1	reviewed	p.G117D	1.000	150	0%	165	20.6%	79	36.7%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ABHD16A	7920	genome.wustl.edu	37	6	31669075	31669075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021160.2	-1	reviewed	p.A78T	1.000	48	0%	52	15.4%	47	21.2%	benign(0.271)	tolerated(0.1)	neutral(0.316)	NULL
CLIC1	1192	genome.wustl.edu	37	6	31698688	31698688	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001288.4	-1	reviewed	p.F219	0.972	56	0%	43	25.6%	1196	38.7%	-	-	-	superfamily_Glutathione S-transferase (GST) C-terminal domain
MSH5	4439	genome.wustl.edu	37	6	31712014	31712014	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000463144	+1	known	p.R119W	0.656	232	0%	362	34.8%	0	-	-	-	-	NULL
MSH5	4439	genome.wustl.edu	37	6	31726549	31726549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025259.5	+1	reviewed	p.R425Q	1.000	82	0%	92	28.3%	4	25%	possibly_damaging(0.941)	tolerated(0.31)	neutral(0.414)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
MSH5	4439	genome.wustl.edu	37	6	31729016	31729016	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025259.5	+1	reviewed	p.E689*	1.000	48	0%	51	51%	3	0%	-	-	-	HMMPfam_MutS_V,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2,superfamily_SSF52540
VWA7	80737	genome.wustl.edu	37	6	31737834	31737834	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025258.2	-1	validated	p.E382*	0.257	77	0%	100	21%	1	0%	-	-	-	HMMSmart_VWA,superfamily_SSF53300
VARS	7407	genome.wustl.edu	37	6	31748521	31748521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006295.2	-1	reviewed	p.D920N	0.994	62	0%	55	32.7%	124	38.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
SLC44A4	80736	genome.wustl.edu	37	6	31839119	31839119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025257.2	-1	reviewed	p.F225V	1.000	134	0%	141	31.2%	12	41.6%	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
EHMT2	10919	genome.wustl.edu	37	6	31857249	31857249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006709.3	-1	reviewed	p.D332A	0.983	244	0%	173	28.9%	15	40%	possibly_damaging(0.454)	deleterious(0)	deleterious(0.593)	NULL
C2	717	genome.wustl.edu	37	6	31911917	31911917	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000063.4	+1	reviewed	p.E606*	0.062	75	0%	82	28%	33	0%	-	-	-	HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SKIV2L	6499	genome.wustl.edu	37	6	31929384	31929384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006929.4	+1	reviewed	p.A284T	1.000	98	0%	115	33.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SKIV2L	6499	genome.wustl.edu	37	6	31936220	31936220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006929.4	+1	reviewed	p.D992Y	1.000	47	0%	42	33.3%	22	31.8%	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
SKIV2L	6499	genome.wustl.edu	37	6	31937088	31937088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006929.4	+1	reviewed	p.R1144Q	1.000	30	0%	31	25.8%	36	36.1%	possibly_damaging(0.727)	tolerated(0.21)	neutral(0.308)	HMMPfam_DSHCT
TNXB	7148	genome.wustl.edu	37	6	32015689	32015689	+	Silent	SNP	G	G	A	rs146798373	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019105.6	-1	reviewed	p.F3380	0.259	57	0%	44	31.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32023806	32023806	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019105.6	-1	reviewed	p.F2763	0.900	69	0%	39	38.5%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32024439	32024439	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019105.6	-1	reviewed	p.D2689	0.998	55	0%	52	30.8%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32037937	32037937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019105.6	-1	reviewed	p.R1749C	0.081	18	0%	17	23.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32039945	32039945	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019105.6	-1	reviewed	p.F1604	0.347	49	0%	49	30.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32049190	32049190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019105.6	-1	reviewed	p.R1333C	0.020	28	0%	24	29.2%	0	-	probably_damaging(0.988)	tolerated(0.14)	deleterious(0.687)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32057143	32057143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019105.6	-1	reviewed	p.S791N	0.956	28	0%	31	25.8%	0	-	possibly_damaging(0.602)	tolerated(0.42)	neutral(0.223)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32065827	32065827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019105.6	-1	reviewed	p.A50V	0.115	57	0%	58	27.6%	0	-	possibly_damaging(0.936)	deleterious(0.04)	deleterious(0.730)	NULL
NOTCH4	4855	genome.wustl.edu	37	6	32166772	32166772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004557.3	-1	reviewed	p.R1489Q	0.007	109	0%	74	29.7%	4	0%	possibly_damaging(0.79)	tolerated(0.42)	neutral(0.310)	NULL
BTNL2	56244	genome.wustl.edu	37	6	32362540	32362540	+	Silent	SNP	G	G	A	rs188023685	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019602.1	-1	provisional	p.I447	0.000	156	0%	164	36.6%	0	-	-	-	-	superfamily_Immunoglobulin
HLA-DRA	3122	genome.wustl.edu	37	6	32411076	32411076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019111.3	+1	reviewed	p.R148Q	0.004	175	0%	162	33.3%	608	0%	benign(0.006)	tolerated(0.06)	neutral(0.323)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
HLA-DQA2	3118	genome.wustl.edu	37	6	32713147	32713147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020056.3	+1	validated	p.F98L	0.000	248	0%	251	33.1%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_MHC_II_alpha,superfamily_MHC antigen-recognition domain
HLA-DOB	3112	genome.wustl.edu	37	6	32782371	32782371	+	Splice_Site	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000447394	-1	known	e3-2	0.979	333	0%	306	31.4%	2	100%	-	-	-	-
TAP1	6890	genome.wustl.edu	37	6	32816896	32816896	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000593.5	-1	reviewed	e6-1	1.000	17	0%	32	18.8%	0	-	-	-	-	-
BRD2	6046	genome.wustl.edu	37	6	32943250	32943250	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000449025	+1	known	p.V147A	1.000	162	0%	137	27%	60	28.3%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
HLA-DOA	3111	genome.wustl.edu	37	6	32975299	32975299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000453319	-1	known	p.R79C	0.000	153	0%	111	27%	3	0%	unknown(0)	deleterious(0)	-	NULL
HLA-DPB1	3115	genome.wustl.edu	37	6	33052874	33052874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002121.4	+1	reviewed	p.S171F	1.000	401	0%	374	30.7%	207	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
COL11A2	1302	genome.wustl.edu	37	6	33144065	33144065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080680.2	-1	reviewed	p.R729W	1.000	42	0%	59	18.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Collagen
SLC39A7	7922	genome.wustl.edu	37	6	33170073	33170073	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000467504	+1	known	NULL	1.000	188	0%	169	29.6%	87	41.3%	-	-	-	-
SLC39A7	7922	genome.wustl.edu	37	6	33170166	33170166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077516.1	+1	validated	p.H254R	0.943	193	0%	209	32.5%	97	38.1%	possibly_damaging(0.637)	tolerated(0.52)	neutral(0.232)	HMMPfam_Zip
VPS52	6293	genome.wustl.edu	37	6	33236863	33236863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022553.4	-1	reviewed	p.R159Q	1.000	311	0%	224	29.5%	38	52.6%	benign(0.016)	tolerated(0.35)	neutral(0.021)	HMMPfam_Vps52
DAXX	1616	genome.wustl.edu	37	6	33287248	33287248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001141970.1	-1	reviewed	p.V629I	0.946	297	0%	324	38.3%	79	37.9%	probably_damaging(0.987)	tolerated(0.17)	deleterious(0.495)	HMMPfam_Daxx
SYNGAP1	8831	genome.wustl.edu	37	6	33411623	33411623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006772.2	+1	reviewed	p.S1098R	0.992	39	0%	30	33.3%	0	-	possibly_damaging(0.718)	tolerated(0.08)	deleterious(0.560)	NULL
MNF1	84300	genome.wustl.edu	37	6	33669137	33669137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032340.2	-1	predicted	p.Y67D	1.000	171	0%	110	21.8%	150	41.3%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	NULL
IP6K3	117283	genome.wustl.edu	37	6	33690743	33690743	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142883.1	-1	reviewed	p.I329	1.000	74	0%	78	32.1%	0	-	-	-	-	HMMPfam_IPK,superfamily_SAICAR synthase-like
MLN	4295	genome.wustl.edu	37	6	33768841	33768841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002418.2	-1	reviewed	p.E34K	0.666	73	0%	101	33.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Motilin_ghrelin
NUDT3	11165	genome.wustl.edu	37	6	34256549	34256549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006703.2	-1	validated	p.S167L	0.997	176	0%	162	26.5%	70	48.5%	benign(0.012)	deleterious(0)	neutral(0.445)	NULL
C6orf106	64771	genome.wustl.edu	37	6	34574539	34574539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024294.2	-1	validated	p.K218N	1.000	149	0%	158	29.7%	28	25%	possibly_damaging(0.925)	tolerated(0.1)	deleterious(0.660)	NULL
UHRF1BP1	54887	genome.wustl.edu	37	6	34838661	34838661	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017754.3	+1	validated	p.K1250T	0.299	104	0%	86	11.6%	6	0%	benign(0.01)	tolerated(0.57)	neutral(0.007)	NULL
ANKS1A	23294	genome.wustl.edu	37	6	34949577	34949577	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015245.2	+1	validated	p.F182	0.043	104	0%	83	31.3%	2	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKS1A	23294	genome.wustl.edu	37	6	35048782	35048782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015245.2	+1	validated	p.L852F	0.997	122	0.8%	126	32.5%	5	20%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMPfam_Ank
SCUBE3	222663	genome.wustl.edu	37	6	35209659	35209659	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152753.2	+1	provisional	p.G463	0.990	90	0%	114	31.6%	1	0%	-	-	-	NULL
ZNF76	7629	genome.wustl.edu	37	6	35260507	35260507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003427.3	+1	provisional	p.E370K	1.000	34	0%	35	28.6%	4	0%	possibly_damaging(0.795)	deleterious(0.02)	deleterious(0.681)	superfamily_C2H2 and C2HC zinc fingers
FKBP5	2289	genome.wustl.edu	37	6	35610507	35610507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145775.1	-1	reviewed	p.G32E	1.000	227	0%	175	25.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FKBP-like
MAPK14	1432	genome.wustl.edu	37	6	36020554	36020554	+	Silent	SNP	G	G	A	rs185580358	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000474429	+1	known	p.E52K	1.000	308	0%	269	35.3%	7	14.2%	-	-	-	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BRPF3	27154	genome.wustl.edu	37	6	36175108	36175108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015695.2	+1	validated	p.T542P	0.997	56	0%	72	22.2%	1	100%	probably_damaging(0.992)	tolerated(0.3)	deleterious(0.476)	NULL
C6orf222	389384	genome.wustl.edu	37	6	36293129	36293129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010903.4	-1	validated	p.V367M	0.000	108	0%	87	26.4%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
C6orf222	389384	genome.wustl.edu	37	6	36294295	36294295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010903.4	-1	validated	p.S343N	0.144	135	0%	129	29.5%	0	-	possibly_damaging(0.796)	tolerated(0.17)	neutral(0.358)	NULL
KCTD20	222658	genome.wustl.edu	37	6	36452493	36452493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173562.3	+1	provisional	p.L287I	1.000	312	0%	244	33.2%	4	0%	benign(0)	tolerated(1)	-	NULL
STK38	11329	genome.wustl.edu	37	6	36492164	36492164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007271.2	-1	provisional	p.E87G	1.000	160	0%	132	40.9%	9	44.4%	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Protein kinase-like (PK-like)
SRSF3	6428	genome.wustl.edu	37	6	36564614	36564614	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003017.4	+1	validated	p.E25	1.000	167	0%	194	38.1%	170	39.4%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DNAH8	1769	genome.wustl.edu	37	6	38771021	38771021	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001371.2	+1	validated	p.E773*	1.000	141	0%	126	38.1%	0	-	-	-	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38821058	38821058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001371.2	+1	validated	p.A1673T	0.992	196	0%	213	45.1%	0	-	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38831767	38831767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001371.2	+1	validated	p.K1926N	1.000	160	0%	155	27.7%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38838196	38838196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001371.2	+1	validated	p.L2066P	0.999	171	0%	151	28.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38851116	38851116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001371.2	+1	validated	p.E2457K	1.000	349	0%	394	11.9%	0	-	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38883093	38883093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001371.2	+1	validated	p.K3143N	0.185	91	0%	82	31.7%	0	-	benign(0.025)	tolerated(0.49)	neutral(0.011)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38891852	38891852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001371.2	+1	validated	p.D3409Y	1.000	331	0%	315	29.2%	0	-	benign(0.257)	deleterious(0.04)	neutral(0.376)	NULL
GLP1R	2740	genome.wustl.edu	37	6	39046923	39046923	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002062.3	+1	validated	p.I330	0.899	123	0%	91	31.9%	0	-	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
KCNK5	8645	genome.wustl.edu	37	6	39162477	39162477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003740.3	-1	reviewed	p.L120I	1.000	122	0%	84	38.1%	7	28.5%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Ion_trans_2,superfamily_SSF81324
KIF6	221458	genome.wustl.edu	37	6	39325124	39325124	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000458470	-1	known	p.S595L	0.000	95	0%	84	31%	0	-	-	-	-	NULL
KIF6	221458	genome.wustl.edu	37	6	39328201	39328201	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000458470	-1	known	p.S576F	0.989	105	0%	69	23.2%	0	-	-	-	-	NULL
KIF6	221458	genome.wustl.edu	37	6	39507857	39507857	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145027.4	-1	validated	p.R523*	0.000	435	0%	337	29.7%	0	-	-	-	-	NULL
LRFN2	57497	genome.wustl.edu	37	6	40400033	40400033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020737.1	-1	provisional	p.R274C	0.995	46	0%	51	49%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00082,superfamily_L domain-like
UNC5CL	222643	genome.wustl.edu	37	6	40998397	40998397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173561.1	-1	provisional	p.N406T	0.972	65	0%	48	22.9%	0	-	possibly_damaging(0.916)	tolerated(0.29)	neutral(0.396)	HMMSmart_DEATH,superfamily_DEATH_like
TREM2	54209	genome.wustl.edu	37	6	41126472	41126472	+	Nonsense_Mutation	SNP	C	C	A	rs75272959	byCluster;byFrequency;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000373122	-1	known	p.E177*	0.000	139	0%	99	33.3%	16	0%	-	-	-	NULL
PRICKLE4	29964	genome.wustl.edu	37	6	41753867	41753867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013397.5	+1	validated	p.L195P	1.000	46	0%	32	53.1%	3	0%	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
USP49	25862	genome.wustl.edu	37	6	41766458	41766458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018561.3	-1	provisional	p.A627V	1.000	179	0%	109	30.3%	0	-	possibly_damaging(0.811)	tolerated(0.08)	deleterious(0.605)	NULL
GUCA1A	2978	genome.wustl.edu	37	6	42141477	42141477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000409.3	+1	reviewed	p.F42L	1.000	176	0%	121	29.8%	0	-	benign(0.017)	tolerated(0.39)	neutral(0.017)	superfamily_EF-hand
GUCA1B	2979	genome.wustl.edu	37	6	42162476	42162476	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002098.5	-1	reviewed	p.F28C	1.000	118	0%	120	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF47473
TRERF1	55809	genome.wustl.edu	37	6	42224802	42224802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033502.2	-1	reviewed	p.P792L	1.000	122	0%	121	32.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ELM2
UBR2	23304	genome.wustl.edu	37	6	42604764	42604764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015255.2	+1	reviewed	p.E564K	1.000	268	0%	231	33.3%	4	0%	benign(0.002)	tolerated(0.39)	neutral(0.016)	NULL
PRPH2	5961	genome.wustl.edu	37	6	42689589	42689589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000322.4	-1	reviewed	p.E162K	1.000	113	0%	152	34.2%	2	0%	possibly_damaging(0.943)	tolerated(0.07)	deleterious(0.707)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
PRPH2	5961	genome.wustl.edu	37	6	42689604	42689604	+	Missense_Mutation	SNP	C	C	T	rs61755787		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000322.4	-1	reviewed	p.D157N	1.000	109	0%	142	32.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
CUL7	9820	genome.wustl.edu	37	6	43010621	43010621	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014780.4	-1	reviewed	p.G1188	1.000	93	0%	72	29.2%	25	68%	-	-	-	HMMPfam_Cullin
CUL7	9820	genome.wustl.edu	37	6	43013766	43013766	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014780.4	-1	reviewed	p.C908	0.758	125	0%	127	34.6%	19	31.5%	-	-	-	HMMPfam_APC10,superfamily_Gal_bind_like
CUL7	9820	genome.wustl.edu	37	6	43016230	43016230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014780.4	-1	reviewed	p.L635I	0.153	364	0%	377	25.7%	9	33.3%	benign(0.029)	deleterious(0.03)	neutral(0.366)	NULL
CUL7	9820	genome.wustl.edu	37	6	43019173	43019173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014780.4	-1	reviewed	p.R256W	1.000	173	0%	175	29.1%	5	20%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
KLC4	89953	genome.wustl.edu	37	6	43034200	43034200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201523.1	+1	validated	p.R261H	1.000	134	0%	162	32.1%	10	70%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_Rab5-bind,superfamily_TPR-like
CUL9	23113	genome.wustl.edu	37	6	43154149	43154149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015089.2	+1	validated	p.E403K	0.870	102	1%	114	14%	3	0%	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
CUL9	23113	genome.wustl.edu	37	6	43155626	43155626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015089.2	+1	validated	p.R586Q	0.171	188	0%	195	35.4%	3	0%	benign(0.014)	tolerated(0.39)	neutral(0.017)	NULL
CUL9	23113	genome.wustl.edu	37	6	43160752	43160752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015089.2	+1	validated	p.K732E	1.000	135	0%	145	22.8%	3	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_ARM repeat
CUL9	23113	genome.wustl.edu	37	6	43172205	43172205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015089.2	+1	validated	p.R1423C	0.998	380	0%	324	27.8%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin
CUL9	23113	genome.wustl.edu	37	6	43181575	43181575	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015089.2	+1	validated	p.L1871	0.998	124	0%	116	28.4%	7	28.5%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
SLC22A7	10864	genome.wustl.edu	37	6	43266324	43266324	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153320.2	+1	reviewed	p.T76	0.005	27	0%	41	24.4%	0	-	-	-	-	NULL
ZNF318	24149	genome.wustl.edu	37	6	43305994	43305994	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014345.2	-1	validated	p.S1914	0.001	236	0.8%	235	24.7%	2	0%	-	-	-	NULL
ZNF318	24149	genome.wustl.edu	37	6	43307069	43307069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014345.2	-1	validated	p.R1556Q	1.000	126	0%	123	36.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF318	24149	genome.wustl.edu	37	6	43308239	43308239	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014345.2	-1	validated	p.K1166T	1.000	176	0%	198	34.8%	7	42.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00451,superfamily_C2H2 and C2HC zinc fingers
XPO5	57510	genome.wustl.edu	37	6	43491716	43491716	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020750.2	-1	validated	p.E1169*	1.000	128	0%	129	41.1%	40	37.5%	-	-	-	NULL
XPO5	57510	genome.wustl.edu	37	6	43501658	43501658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020750.2	-1	validated	p.K810T	1.000	113	0%	114	28.9%	49	65.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_ARM repeat
XPO5	57510	genome.wustl.edu	37	6	43521126	43521126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020750.2	-1	validated	p.R519Q	1.000	31	0%	41	39%	16	56.2%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	superfamily_ARM repeat
VEGFA	7422	genome.wustl.edu	37	6	43738988	43738988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025366.2	+1	reviewed	p.N182T	1.000	24	0%	12	50%	22	22.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HSP90AB1	3326	genome.wustl.edu	37	6	44217182	44217182	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007355.2	+1	provisional	p.K72N	0.993	161	0%	157	28.7%	788	44%	benign(0.35)	tolerated(0.1)	neutral(0.397)	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
HSP90AB1	3326	genome.wustl.edu	37	6	44221034	44221034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007355.2	+1	provisional	p.A662T	1.000	709	0%	592	27.9%	2241	40%	possibly_damaging(0.706)	deleterious(0)	deleterious(0.699)	HMMPfam_HSP90,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)
AARS2	57505	genome.wustl.edu	37	6	44274758	44274758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020745.2	-1	validated	p.R351C	1.000	88	0%	116	27.6%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ala-tRNA-synth_IIc_anticod-bd,HMMPfam_tRNA-synt_2c
CDC5L	988	genome.wustl.edu	37	6	44374092	44374092	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001253.2	+1	reviewed	p.K264T	1.000	245	0%	193	33.7%	7	57.1%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
CYP39A1	51302	genome.wustl.edu	37	6	46604155	46604155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016593.3	-1	reviewed	p.A235S	0.017	101	0%	99	21.2%	3	0%	benign(0.012)	tolerated(0.69)	neutral(0.003)	superfamily_Cytochrome P450
SLC25A27	9481	genome.wustl.edu	37	6	46636508	46636508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004277.3	+1	reviewed	p.I228V	0.997	170	0%	138	34.1%	0	-	benign(0.03)	tolerated(0.5)	neutral(0.011)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
TDRD6	221400	genome.wustl.edu	37	6	46657579	46657579	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010870.2	+1	validated	p.R572*	0.997	179	0%	114	32.5%	0	-	-	-	-	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
TDRD6	221400	genome.wustl.edu	37	6	46661023	46661023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010870.2	+1	validated	p.L1720I	0.000	161	0%	114	30.7%	0	-	possibly_damaging(0.89)	tolerated(0.11)	deleterious(0.621)	NULL
PLA2G7	7941	genome.wustl.edu	37	6	46678321	46678321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005084.3	-1	reviewed	p.K246N	0.921	343	0%	270	31.5%	26	0%	benign(0.27)	tolerated(0.63)	neutral(0.033)	HMMPfam_PAF-AH_p_II,superfamily_SSF53474
GPR116	221395	genome.wustl.edu	37	6	46826956	46826956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098518.1	-1	validated	p.S895L	0.901	169	0%	148	31.8%	7	0%	possibly_damaging(0.856)	tolerated(0.05)	deleterious(0.676)	NULL
GPR116	221395	genome.wustl.edu	37	6	46851871	46851871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098518.1	-1	validated	p.E156*	0.687	172	0%	218	28%	0	-	-	-	-	NULL
CD2AP	23607	genome.wustl.edu	37	6	47522496	47522496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012120.2	+1	reviewed	p.D179N	0.982	190	0%	148	37.8%	2	50%	benign(0.196)	tolerated(0.17)	neutral(0.077)	superfamily_SH3
GPR115	221393	genome.wustl.edu	37	6	47680184	47680184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153838.3	+1	validated	p.V131A	0.004	215	0%	154	37%	0	-	benign(0.012)	deleterious(0.03)	neutral(0.365)	NULL
PTCHD4	442213	genome.wustl.edu	37	6	47846642	47846642	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013732.3	-1	validated	p.S629	0.996	198	0%	163	32.5%	0	-	-	-	-	HMMPfam_Patched,superfamily_SSF82866
PTCHD4	442213	genome.wustl.edu	37	6	47846957	47846957	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013732.3	-1	validated	p.L524	0.995	68	0%	55	38.2%	0	-	-	-	-	HMMPfam_Patched
PTCHD4	442213	genome.wustl.edu	37	6	48036107	48036107	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398738	-1	known	p.P95S	1.000	78	0%	68	30.9%	0	-	-	-	-	NULL
CRISP1	167	genome.wustl.edu	37	6	49819777	49819777	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001131.2	-1	reviewed	p.I44	0.000	291	0%	227	33%	0	-	-	-	-	HMMSmart_SM00198,superfamily_PR-1-like
DEFB113	245927	genome.wustl.edu	37	6	49936496	49936496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037729.1	-1	provisional	p.S48N	0.000	44	0%	61	26.2%	0	-	benign(0.025)	deleterious(0.03)	neutral(0.365)	NULL
TFAP2D	83741	genome.wustl.edu	37	6	50682922	50682922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172238.3	+1	validated	p.P45T	1.000	629	0.2%	496	29.8%	0	-	possibly_damaging(0.818)	deleterious(0.02)	deleterious(0.692)	NULL
TFAP2B	7021	genome.wustl.edu	37	6	50807985	50807985	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003221.3	+1	reviewed	p.R353*	1.000	230	0.4%	168	26.8%	0	-	-	-	-	HMMPfam_TF_AP-2
PKHD1	5314	genome.wustl.edu	37	6	51483896	51483896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.I4070V	0.006	279	0%	201	33.8%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51612695	51612695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.R3240Q	0.998	262	0%	241	22.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51712731	51712731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.Y2650C	0.918	231	0%	266	29.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51720739	51720739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.E2621D	1.000	341	0%	284	30.3%	0	-	benign(0.374)	tolerated(0.13)	neutral(0.371)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51732827	51732827	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.I2523L	0.991	163	0%	135	30.4%	0	-	possibly_damaging(0.549)	deleterious(0.04)	deleterious(0.535)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51768402	51768402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.V2330A	0.052	432	0%	308	33.1%	0	-	benign(0.022)	tolerated(0.14)	neutral(0.251)	HMMSmart_SM00710,superfamily_Pectin lyase-like
PKHD1	5314	genome.wustl.edu	37	6	51771051	51771051	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.N2257T	0.988	186	0%	215	22.3%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00710,superfamily_Pectin lyase-like
PKHD1	5314	genome.wustl.edu	37	6	51776733	51776733	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.E2118	0.655	118	0%	121	30.6%	0	-	-	-	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51799028	51799028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.E2001K	0.000	599	0%	466	29.2%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_G8
PKHD1	5314	genome.wustl.edu	37	6	51890683	51890683	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	p.E1309*	0.022	149	0%	135	26.7%	0	-	-	-	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51949678	51949678	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138694.3	-1	reviewed	e1+2	1.000	287	0%	214	21%	0	-	-	-	-	-
MCM3	4172	genome.wustl.edu	37	6	52134005	52134005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002388.3	-1	reviewed	p.R616Q	1.000	170	0%	159	29.6%	99	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540
EFHC1	114327	genome.wustl.edu	37	6	52318900	52318900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018100.3	+1	reviewed	p.R244Q	1.000	109	0%	97	28.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00676
TRAM2	9697	genome.wustl.edu	37	6	52369461	52369461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012288.3	-1	reviewed	p.N323D	0.994	16	0%	21	38.1%	2	0%	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
TMEM14A	28978	genome.wustl.edu	37	6	52546669	52546669	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014051.3	+1	validated	p.A43	1.000	161	0%	125	28.8%	71	29.5%	-	-	-	HMMPfam_Tmemb_14
GSTA2	2939	genome.wustl.edu	37	6	52616394	52616394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000846.4	-1	reviewed	p.S176Y	0.909	344	0%	345	13.6%	0	-	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	HMMPfam_GST_C,superfamily_GST_C_like
GSTA2	2939	genome.wustl.edu	37	6	52617675	52617675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000846.4	-1	reviewed	p.R131C	0.573	780	0%	770	28.8%	1	100%	possibly_damaging(0.803)	deleterious(0.02)	deleterious(0.685)	HMMPfam_GST_C,superfamily_GST_C_like
GSTA3	2940	genome.wustl.edu	37	6	52764863	52764863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000847.4	-1	reviewed	p.Y95H	1.000	519	0%	528	16.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Glutathione S-transferase (GST) C-terminal domain
ICK	22858	genome.wustl.edu	37	6	52871165	52871165	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014920.3	-1	reviewed	p.I564	0.000	182	0%	156	32.7%	7	57.1%	-	-	-	NULL
KLHL31	401265	genome.wustl.edu	37	6	53519933	53519933	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003760.4	-1	validated	p.I46M	1.000	64	0%	56	23.2%	0	-	benign(0.022)	deleterious(0.01)	neutral(0.407)	NULL
LRRC1	55227	genome.wustl.edu	37	6	53706968	53706968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018214.4	+1	validated	p.L74F	1.000	163	0%	112	25%	11	63.6%	possibly_damaging(0.561)	deleterious(0)	deleterious(0.636)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
LRRC1	55227	genome.wustl.edu	37	6	53761329	53761329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018214.4	+1	validated	p.E160D	1.000	212	0%	223	27.4%	12	100%	benign(0.102)	tolerated(0.18)	neutral(0.064)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
LRRC1	55227	genome.wustl.edu	37	6	53784468	53784468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018214.4	+1	validated	p.E427K	1.000	215	0%	149	30.9%	31	0%	benign(0.005)	tolerated(0.17)	neutral(0.059)	NULL
MLIP	90523	genome.wustl.edu	37	6	53989330	53989330	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138569.2	+1	validated	p.A93	0.004	150	0%	166	33.1%	1	0%	-	-	-	NULL
TINAG	27283	genome.wustl.edu	37	6	54173575	54173575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014464.3	+1	validated	p.A76V	0.998	924	0%	922	30.7%	3	0%	benign(0.024)	tolerated(0.11)	neutral(0.273)	HMMSmart_SM00201
FAM83B	222584	genome.wustl.edu	37	6	54792313	54792313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010872.1	+1	validated	p.R206Q	1.000	137	0%	143	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1669,superfamily_SSF56024
FAM83B	222584	genome.wustl.edu	37	6	54804590	54804590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010872.1	+1	validated	p.R274I	1.000	191	0%	189	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1669,superfamily_SSF56024
HCRTR2	3062	genome.wustl.edu	37	6	55113538	55113538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001526.3	+1	reviewed	p.P109S	1.000	392	0%	402	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
GFRAL	389400	genome.wustl.edu	37	6	55198632	55198632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207410.2	+1	validated	p.S69I	0.006	345	0%	284	28.5%	0	-	benign(0.414)	deleterious(0.01)	deleterious(0.540)	NULL
GFRAL	389400	genome.wustl.edu	37	6	55264040	55264040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207410.2	+1	validated	p.I339L	0.007	122	0%	106	32.1%	0	-	possibly_damaging(0.585)	deleterious(0)	deleterious(0.646)	NULL
HMGCLL1	54511	genome.wustl.edu	37	6	55378862	55378862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019036.2	-1	validated	p.N206H	0.996	121	0%	110	14.5%	0	-	benign(0.115)	deleterious(0.05)	neutral(0.354)	HMMPfam_HMGL-like,superfamily_Aldolase
HMGCLL1	54511	genome.wustl.edu	37	6	55378892	55378892	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019036.2	-1	validated	p.E196*	1.000	125	0%	89	33.7%	0	-	-	-	-	HMMPfam_HMGL-like,superfamily_Aldolase
BMP5	653	genome.wustl.edu	37	6	55620456	55620456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021073.2	-1	reviewed	p.V414I	1.000	243	0%	252	25.4%	0	-	possibly_damaging(0.509)	tolerated(0.05)	deleterious(0.516)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
DST	667	genome.wustl.edu	37	6	56329546	56329546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000370769	-1	known	p.H7330N	1.000	50	0%	37	32.4%	0	-	probably_damaging(0.983)	-	-	NULL
DST	667	genome.wustl.edu	37	6	56373398	56373398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015548.4	-1	reviewed	p.D3767Y	1.000	302	0%	265	34%	2	0%	probably_damaging(0.996)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56425171	56425171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015548.4	-1	reviewed	p.K2164N	1.000	38	0%	36	25%	0	-	probably_damaging(1)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56458647	56458647	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015548.4	-1	reviewed	p.F1557	1.000	619	0%	451	26.4%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56473826	56473826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000370769	-1	known	p.S1656F	0.322	321	0%	293	32.4%	0	-	possibly_damaging(0.931)	deleterious(0.03)	deleterious(0.742)	superfamily_Plakin repeat
DST	667	genome.wustl.edu	37	6	56480383	56480383	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001723.5	-1	reviewed	p.G2628*	1.000	179	0%	168	32.1%	0	-	-	-	-	HMMSmart_PLEC,superfamily_SSF75399
KIAA1586	57691	genome.wustl.edu	37	6	56918176	56918176	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020931.2	+1	validated	p.E293D	0.994	133	0%	142	29.6%	3	33.3%	benign(0.085)	tolerated(0.54)	neutral(0.013)	NULL
KIAA1586	57691	genome.wustl.edu	37	6	56918634	56918634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020931.2	+1	validated	p.K446T	1.000	102	0%	91	29.7%	0	-	benign(0.104)	tolerated(0.91)	neutral(0.008)	NULL
KIAA1586	57691	genome.wustl.edu	37	6	56919214	56919214	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020931.2	+1	validated	p.W639*	0.994	125	0%	81	30.9%	2	50%	-	-	-	NULL
ZNF451	26036	genome.wustl.edu	37	6	57011898	57011898	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031623.2	+1	validated	p.R339*	1.000	137	0%	102	32.4%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF451	26036	genome.wustl.edu	37	6	57025942	57025942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031623.2	+1	validated	p.S1044Y	1.000	173	0%	133	29.3%	7	0%	possibly_damaging(0.604)	deleterious(0.02)	deleterious(0.593)	NULL
RAB23	51715	genome.wustl.edu	37	6	57072428	57072428	+	Missense_Mutation	SNP	C	C	T	rs145669565		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016277.3	-1	reviewed	p.R80Q	1.000	277	0%	205	29.3%	5	40%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRIM2	5558	genome.wustl.edu	37	6	57398241	57398241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000425433	+1	known	p.G315D	1.000	365	0%	371	11.6%	16	0%	-	-	-	HMMPfam_DNA_primase_lrg
FKBP1C	642489	genome.wustl.edu	37	6	63921566	63921566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000370659	+1	known	p.K35N	0.984	63	0%	74	25.7%	62	0%	benign(0.002)	tolerated(0.1)	neutral(0.286)	HMMPfam_FKBP_C,superfamily_SSF54534
LGSN	51557	genome.wustl.edu	37	6	63995571	63995571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016571.2	-1	reviewed	p.R84H	1.000	69	0%	54	20.4%	0	-	benign(0.004)	tolerated(0.59)	neutral(0.004)	superfamily_Glutamine synthetase N-terminal domain
PHF3	23469	genome.wustl.edu	37	6	64389964	64389964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015153.2	+1	provisional	p.D103A	1.000	306	0%	328	30.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHF3	23469	genome.wustl.edu	37	6	64394170	64394170	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015153.2	+1	provisional	p.E183*	1.000	286	0%	298	27.2%	1	0%	-	-	-	NULL
PHF3	23469	genome.wustl.edu	37	6	64394801	64394801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015153.2	+1	provisional	p.R393I	0.002	110	0%	157	31.2%	1	0%	possibly_damaging(0.667)	tolerated(0.08)	deleterious(0.536)	NULL
PHF3	23469	genome.wustl.edu	37	6	64421836	64421836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015153.2	+1	provisional	p.E1451A	1.000	299	0%	245	25.7%	2	0%	possibly_damaging(0.621)	deleterious(0)	deleterious(0.661)	NULL
EYS	346007	genome.wustl.edu	37	6	66054027	66054027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142800.1	-1	reviewed	p.F501L	0.001	184	0%	132	34.8%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
EYS	346007	genome.wustl.edu	37	6	66204997	66204997	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142800.1	-1	reviewed	p.L103V	0.991	138	0%	114	32.5%	0	-	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	NULL
BAI3	577	genome.wustl.edu	37	6	69348941	69348941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.K125T	1.000	154	0%	93	26.9%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
BAI3	577	genome.wustl.edu	37	6	69349037	69349037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.V157A	1.000	162	0%	116	34.5%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
BAI3	577	genome.wustl.edu	37	6	69646410	69646410	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	e3-1	1.000	24	0%	19	31.6%	0	-	-	-	-	-
BAI3	577	genome.wustl.edu	37	6	69666549	69666549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.W458L	1.000	218	0%	217	33.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
BAI3	577	genome.wustl.edu	37	6	69684663	69684663	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.E512*	1.000	98	0%	93	28%	0	-	-	-	-	HMMPfam_HRM,HMMSmart_SM00008
BAI3	577	genome.wustl.edu	37	6	69684706	69684706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.R526I	1.000	99	0%	101	34.7%	0	-	benign(0.378)	deleterious(0.01)	deleterious(0.526)	HMMPfam_HRM,HMMSmart_SM00008
BAI3	577	genome.wustl.edu	37	6	69703661	69703661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.I579N	1.000	775	0%	580	24%	0	-	possibly_damaging(0.815)	deleterious(0.01)	deleterious(0.713)	NULL
BAI3	577	genome.wustl.edu	37	6	69758087	69758087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.I706M	1.000	166	0%	94	24.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BAI3	577	genome.wustl.edu	37	6	69772894	69772894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.S801L	0.997	159	0%	140	30%	0	-	possibly_damaging(0.659)	tolerated(0.06)	deleterious(0.555)	NULL
BAI3	577	genome.wustl.edu	37	6	69949045	69949045	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.L914R	1.000	212	0%	171	25.1%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	HMMPfam_7tm_2
BAI3	577	genome.wustl.edu	37	6	70040426	70040426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.L1022I	1.000	70	0%	38	31.6%	0	-	benign(0.122)	tolerated(0.58)	neutral(0.015)	HMMPfam_7tm_2
BAI3	577	genome.wustl.edu	37	6	70064192	70064192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001704.2	+1	reviewed	p.S1176L	1.000	246	0%	206	29.6%	0	-	possibly_damaging(0.512)	deleterious(0)	deleterious(0.617)	NULL
COL19A1	1310	genome.wustl.edu	37	6	70639519	70639519	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001858.4	+1	reviewed	p.D198A	0.006	261	0%	255	31.4%	0	-	unknown(0)	tolerated(0.13)	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
COL9A1	1297	genome.wustl.edu	37	6	71004009	71004009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001851.4	-1	reviewed	p.G186D	0.113	306	0%	318	25.2%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
OGFRL1	79627	genome.wustl.edu	37	6	72006462	72006462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024576.3	+1	validated	p.K212Q	1.000	185	0%	144	33.3%	8	37.5%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_OGFr_N
RIMS1	22999	genome.wustl.edu	37	6	72947569	72947569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014989.4	+1	reviewed	p.F634S	1.000	116	0%	108	24.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
RIMS1	22999	genome.wustl.edu	37	6	72957802	72957802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014989.4	+1	reviewed	p.A738V	1.000	175	0%	155	21.9%	0	-	benign(0.097)	tolerated(0.65)	neutral(0.010)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RIMS1	22999	genome.wustl.edu	37	6	72960715	72960715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014989.4	+1	reviewed	p.D822Y	1.000	27	0%	13	30.8%	0	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RIMS1	22999	genome.wustl.edu	37	6	72967974	72967974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014989.4	+1	reviewed	p.P973T	1.000	54	0%	37	35.1%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
RIMS1	22999	genome.wustl.edu	37	6	73043353	73043353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014989.4	+1	reviewed	p.S1394F	1.000	62	0%	60	26.7%	0	-	benign(0.023)	deleterious(0)	neutral(0.446)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73713632	73713632	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019842.3	+1	reviewed	p.F134V	1.000	106	0%	85	37.6%	0	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	superfamily_Voltage-gated potassium channels
KCNQ5	56479	genome.wustl.edu	37	6	73751711	73751711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019842.3	+1	reviewed	p.S181Y	1.000	415	0%	409	30.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNQ5	56479	genome.wustl.edu	37	6	73904619	73904619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019842.3	+1	reviewed	p.P761S	0.998	171	0%	160	43.1%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73904746	73904746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019842.3	+1	reviewed	p.S803Y	0.843	205	0%	162	19.1%	0	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73904824	73904824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019842.3	+1	reviewed	p.S829Y	1.000	157	0%	129	30.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73904956	73904956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019842.3	+1	reviewed	p.D873G	1.000	153	0%	140	31.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
OOEP	441161	genome.wustl.edu	37	6	74079335	74079335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080507.2	-1	validated	p.E61K	0.000	119	0%	133	24.1%	0	-	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
MB21D1	115004	genome.wustl.edu	37	6	74138494	74138494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138441.2	-1	validated	p.E385D	0.002	102	0%	117	33.3%	1	0%	benign(0.003)	tolerated(0.68)	neutral(0.002)	NULL
MB21D1	115004	genome.wustl.edu	37	6	74150022	74150022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138441.2	-1	validated	p.N342H	0.000	220	0%	226	33.6%	4	0%	benign(0.002)	tolerated(0.31)	neutral(0.027)	NULL
MB21D1	115004	genome.wustl.edu	37	6	74155384	74155384	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138441.2	-1	validated	p.Y248*	0.729	109	0%	99	22.2%	1	0%	-	-	-	NULL
MTO1	25821	genome.wustl.edu	37	6	74201960	74201960	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001123226.1	+1	reviewed	p.A587	1.000	106	0%	118	36.4%	9	77.7%	-	-	-	NULL
COL12A1	1303	genome.wustl.edu	37	6	75834943	75834943	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004370.5	-1	reviewed	p.Y2169	0.994	113	0%	85	28.2%	29	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75884892	75884892	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004370.5	-1	reviewed	p.E858*	1.000	186	0%	175	29.1%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75902057	75902057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004370.5	-1	reviewed	p.E69*	1.000	108	0%	73	34.2%	5	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FILIP1	27145	genome.wustl.edu	37	6	76022250	76022250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015687.2	-1	validated	p.E1100K	0.967	359	0.3%	341	28.7%	0	-	possibly_damaging(0.701)	tolerated(0.2)	neutral(0.301)	NULL
SENP6	26054	genome.wustl.edu	37	6	76373065	76373065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015571.2	+1	validated	p.F275L	1.000	124	0%	137	26.3%	10	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MYO6	4646	genome.wustl.edu	37	6	76545649	76545649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004999.3	+1	reviewed	p.D177Y	1.000	166	0%	108	35.2%	6	16.6%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO6	4646	genome.wustl.edu	37	6	76558214	76558214	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004999.3	+1	reviewed	p.G348	1.000	161	0%	105	22.9%	7	42.8%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO6	4646	genome.wustl.edu	37	6	76624584	76624584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004999.3	+1	reviewed	p.R1238Q	1.000	94	0%	72	29.2%	53	52.8%	unknown(0)	deleterious(0.01)	-	NULL
IMPG1	3617	genome.wustl.edu	37	6	76640782	76640782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001563.2	-1	provisional	p.R711C	1.000	86	0%	53	28.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
IMPG1	3617	genome.wustl.edu	37	6	76660408	76660408	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001563.2	-1	provisional	p.T565	0.281	109	0%	92	10.9%	0	-	-	-	-	superfamily_SSF82671
LCA5	167691	genome.wustl.edu	37	6	80197139	80197139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122769.2	-1	reviewed	p.S559L	1.000	218	0%	191	28.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM46A	55603	genome.wustl.edu	37	6	82459482	82459482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017633.2	-1	validated	p.Y420C	1.000	122	0%	124	25.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM46A	55603	genome.wustl.edu	37	6	82459966	82459966	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017633.2	-1	validated	p.I259L	0.996	91	0%	98	21.4%	0	-	benign(0.418)	deleterious(0.01)	deleterious(0.541)	HMMPfam_DUF1693
DOPEY1	23033	genome.wustl.edu	37	6	83855291	83855291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015018.2	+1	validated	p.R1864C	1.000	90	0%	85	30.6%	6	66.6%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
PGM3	5238	genome.wustl.edu	37	6	83885778	83885778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015599.1	-1	provisional	p.V344A	1.000	105	1%	78	26.9%	17	29.4%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_Phosphoglucomutase first 3 domains
PGM3	5238	genome.wustl.edu	37	6	83889564	83889564	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015599.1	-1	provisional	p.L304	0.470	137	0%	103	28.2%	20	55%	-	-	-	superfamily_Phosphoglucomutase first 3 domains
ME1	4199	genome.wustl.edu	37	6	83926243	83926243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002395.4	-1	reviewed	p.D508N	0.999	138	0%	146	22.6%	1	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Malic_M,superfamily_NAD(P)-bd
ME1	4199	genome.wustl.edu	37	6	83949287	83949287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002395.4	-1	reviewed	p.Q295K	1.000	177	0%	113	32.7%	0	-	benign(0.044)	deleterious(0.01)	neutral(0.408)	HMMPfam_Malic_M,superfamily_NAD(P)-bd
ME1	4199	genome.wustl.edu	37	6	84108193	84108193	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002395.4	-1	reviewed	p.L85	0.995	201	0%	176	31.2%	0	-	-	-	-	HMMPfam_malic,superfamily_SSF53223
PRSS35	167681	genome.wustl.edu	37	6	84234029	84234029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153362.2	+1	validated	p.Y290C	1.000	168	0%	159	23.9%	0	-	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PRSS35	167681	genome.wustl.edu	37	6	84234198	84234198	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153362.2	+1	validated	p.T346	0.014	175	0%	146	24.7%	0	-	-	-	-	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SNAP91	9892	genome.wustl.edu	37	6	84333037	84333037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014841.2	-1	validated	p.I264V	1.000	39	0%	39	28.2%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_ANTH,superfamily_GAT-like domain
KIAA1009	22832	genome.wustl.edu	37	6	84925113	84925113	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014895.2	-1	validated	p.E130	0.998	82	0%	48	37.5%	0	-	-	-	-	NULL
TBX18	9096	genome.wustl.edu	37	6	85446835	85446835	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080508.1	-1	provisional	p.T464	0.885	112	0%	89	23.6%	1	0%	-	-	-	NULL
SNX14	57231	genome.wustl.edu	37	6	86216939	86216939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000508658	-1	known	p.S177I	0.158	72	0%	49	22.4%	1	100%	benign(0.016)	tolerated(0.29)	neutral(0.030)	NULL
HTR1E	3354	genome.wustl.edu	37	6	87725332	87725332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000865.2	+1	validated	p.L94I	0.983	285	0%	274	33.2%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF292	23036	genome.wustl.edu	37	6	87964707	87964707	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015021.1	+1	validated	p.R454*	1.000	162	0%	140	32.9%	0	-	-	-	-	NULL
ZNF292	23036	genome.wustl.edu	37	6	87967509	87967509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015021.1	+1	validated	p.R1388G	1.000	182	0%	179	34.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF292	23036	genome.wustl.edu	37	6	87969691	87969691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015021.1	+1	validated	p.R2115Q	1.000	202	0%	186	36%	6	50%	benign(0.299)	tolerated(0.12)	neutral(0.353)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF292	23036	genome.wustl.edu	37	6	87971291	87971291	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015021.1	+1	validated	p.S2648	0.998	85	0%	79	24.1%	8	62.5%	-	-	-	NULL
SLC35A1	10559	genome.wustl.edu	37	6	88187148	88187148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006416.4	+1	reviewed	p.I29V	0.908	138	0%	129	27.9%	1	100%	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_SSF103481
SLC35A1	10559	genome.wustl.edu	37	6	88210273	88210273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006416.4	+1	reviewed	p.V81A	1.000	191	0%	134	29.9%	5	80%	benign(0.064)	deleterious(0)	neutral(0.449)	HMMPfam_Nuc_sug_transp,superfamily_SSF103481
ORC3	23595	genome.wustl.edu	37	6	88326097	88326097	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181837.1	+1	reviewed	p.I313	1.000	54	0%	37	18.9%	9	55.5%	-	-	-	HMMPfam_ORC3_N
CNR1	1268	genome.wustl.edu	37	6	88853737	88853737	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016083.4	-1	reviewed	p.A419	0.004	159	0%	165	25.5%	0	-	-	-	-	NULL
RNGTT	8732	genome.wustl.edu	37	6	89322511	89322511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003800.3	-1	validated	p.R574Q	1.000	307	0%	260	31.5%	10	0%	probably_damaging(0.988)	tolerated(0.65)	neutral(0.441)	superfamily_Nucleic acid-binding proteins
SRSF12	135295	genome.wustl.edu	37	6	89814971	89814971	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080743.4	-1	validated	p.Q95*	1.000	55	0%	70	34.3%	4	0%	-	-	-	superfamily_SSF54928
ANKRD6	22881	genome.wustl.edu	37	6	90338878	90338878	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000415924	+1	known	p.E425*	1.000	106	0%	110	26.4%	3	0%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
MDN1	23195	genome.wustl.edu	37	6	90406124	90406124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014611.1	-1	provisional	p.S3113L	0.996	64	0%	54	25.9%	0	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
MDN1	23195	genome.wustl.edu	37	6	90442323	90442323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014611.1	-1	provisional	p.S1632F	1.000	220	0%	227	23.8%	0	-	possibly_damaging(0.915)	tolerated(0.12)	deleterious(0.627)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GJA10	84694	genome.wustl.edu	37	6	90605563	90605563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032602.1	+1	validated	p.D459G	0.053	533	0%	409	30.8%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
BACH2	60468	genome.wustl.edu	37	6	90661252	90661252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021813.2	-1	validated	p.S191R	0.787	169	0%	138	29%	0	-	benign(0.261)	deleterious(0.01)	neutral(0.433)	NULL
EPHA7	2045	genome.wustl.edu	37	6	93956553	93956553	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004440.3	-1	reviewed	p.R895*	1.000	239	0%	181	31.5%	2	0%	-	-	-	superfamily_Protein kinase-like (PK-like)
FUT9	10690	genome.wustl.edu	37	6	96651363	96651363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006581.3	+1	validated	p.R111Q	1.000	159	0%	128	38.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Glyco_transf_10
FUT9	10690	genome.wustl.edu	37	6	96651507	96651507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006581.3	+1	validated	p.R159H	1.000	139	0%	94	26.6%	0	-	possibly_damaging(0.826)	tolerated(0.07)	deleterious(0.633)	HMMPfam_Glyco_transf_10
FUT9	10690	genome.wustl.edu	37	6	96651543	96651543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006581.3	+1	validated	p.L171S	1.000	128	0%	91	24.2%	0	-	benign(0.335)	deleterious(0.03)	deleterious(0.470)	HMMPfam_Glyco_transf_10
FUT9	10690	genome.wustl.edu	37	6	96651992	96651992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006581.3	+1	validated	p.D321N	0.997	154	0%	97	25.8%	0	-	benign(0.004)	tolerated(0.27)	neutral(0.034)	HMMPfam_Glyco_transf_10
UFL1	23376	genome.wustl.edu	37	6	96990853	96990853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015323.4	+1	validated	p.D455Y	1.000	168	0%	180	31.1%	3	100%	possibly_damaging(0.584)	deleterious(0.02)	deleterious(0.584)	NULL
UFL1	23376	genome.wustl.edu	37	6	96996156	96996156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015323.4	+1	validated	p.K507Q	1.000	106	0%	101	28.7%	7	14.2%	benign(0.174)	tolerated(0.31)	neutral(0.043)	NULL
FHL5	9457	genome.wustl.edu	37	6	97058496	97058496	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020482.4	+1	reviewed	p.E185*	1.000	238	0%	191	26.2%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
MMS22L	253714	genome.wustl.edu	37	6	97679520	97679520	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198468.2	-1	predicted	p.S437	1.000	83	0%	70	25.7%	0	-	-	-	-	NULL
COQ3	51805	genome.wustl.edu	37	6	99817482	99817482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017421.3	-1	validated	p.K368N	0.960	271	0.4%	262	29%	10	90%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
PNISR	25957	genome.wustl.edu	37	6	99856007	99856007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015491.1	-1	validated	p.E272K	0.449	179	0%	138	32.6%	13	7.6%	unknown(0)	tolerated(0.82)	-	NULL
USP45	85015	genome.wustl.edu	37	6	99883677	99883677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080481.1	-1	provisional	p.V787G	1.000	197	0%	170	23.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP45	85015	genome.wustl.edu	37	6	99912980	99912980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080481.1	-1	provisional	p.I380M	1.000	216	0%	128	28.1%	0	-	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	HMMPfam_UCH,superfamily_Cysteine proteinases
PRDM13	59336	genome.wustl.edu	37	6	100055065	100055065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000359773	+1	known	p.I52S	0.006	37	0%	41	17.1%	0	-	benign(0.382)	deleterious(0)	deleterious(0.567)	NULL
MCHR2	84539	genome.wustl.edu	37	6	100403908	100403908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040179.1	-1	validated	p.S39F	1.000	179	0%	141	12.1%	0	-	benign(0.003)	tolerated(0.13)	neutral(0.253)	superfamily_SSF81321
SIM1	6492	genome.wustl.edu	37	6	100838366	100838366	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005068.2	-1	reviewed	p.S724	0.383	245	0%	162	43.2%	0	-	-	-	-	NULL
ASCC3	10973	genome.wustl.edu	37	6	101296284	101296284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006828.2	-1	validated	p.E181K	1.000	149	0%	144	32.6%	2	100%	possibly_damaging(0.512)	tolerated(0.54)	neutral(0.179)	NULL
BVES	11149	genome.wustl.edu	37	6	105573276	105573276	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007073.3	-1	reviewed	p.L177M	0.981	215	0%	128	28.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Popeye,superfamily_cAMP-binding domain-like
POPDC3	64208	genome.wustl.edu	37	6	105607601	105607601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022361.4	-1	reviewed	p.E193D	1.000	67	0%	62	24.2%	0	-	probably_damaging(0.987)	tolerated(0.33)	neutral(0.461)	HMMPfam_Popeye,superfamily_cAMP-binding domain-like
PREP	5550	genome.wustl.edu	37	6	105800891	105800891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002726.3	-1	reviewed	p.R260Q	0.998	320	0%	306	25.8%	36	38.8%	possibly_damaging(0.93)	tolerated(0.34)	neutral(0.400)	HMMPfam_Peptidase_S9_N,superfamily_Peptidase_S9A_N
PREP	5550	genome.wustl.edu	37	6	105845794	105845794	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002726.3	-1	reviewed	p.D18	1.000	156	0%	170	39.4%	17	52.9%	-	-	-	HMMPfam_Peptidase_S9_N,superfamily_Peptidase_S9A_N
PRDM1	639	genome.wustl.edu	37	6	106553388	106553388	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001198.3	+1	reviewed	p.L451	0.000	82	0%	83	34.9%	8	0%	-	-	-	NULL
RTN4IP1	84816	genome.wustl.edu	37	6	107031270	107031270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032730.4	-1	reviewed	p.R339H	1.000	34	0%	31	29%	22	36.3%	benign(0.164)	tolerated(0.19)	neutral(0.065)	superfamily_NAD(P)-binding Rossmann-fold domains
BEND3	57673	genome.wustl.edu	37	6	107391627	107391627	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080450.2	-1	validated	p.I256	0.982	25	0%	28	35.7%	4	25%	-	-	-	NULL
SEC63	11231	genome.wustl.edu	37	6	108227909	108227909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007214.4	-1	reviewed	p.T269M	0.995	425	0%	307	29%	33	30.3%	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	HMMPfam_Sec63,HMMSmart_SEC63
FOXO3	2309	genome.wustl.edu	37	6	108985322	108985322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001455.3	+1	reviewed	p.S429Y	0.999	225	0%	203	29.1%	8	37.5%	benign(0.313)	deleterious(0.03)	neutral(0.462)	NULL
SESN1	27244	genome.wustl.edu	37	6	109315798	109315798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014454.1	-1	provisional	p.F329L	0.998	96	0%	85	25.9%	16	50%	benign(0)	tolerated(0.8)	neutral(0.001)	HMMPfam_PA26
PPIL6	285755	genome.wustl.edu	37	6	109748082	109748082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173672.4	-1	validated	p.R200Q	0.998	369	0%	345	61.7%	10	100%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
FIG4	9896	genome.wustl.edu	37	6	110037745	110037745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014845.5	+1	reviewed	p.R88Q	1.000	311	0%	221	30.8%	3	0%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
GPR6	2830	genome.wustl.edu	37	6	110301235	110301235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005284.3	+1	validated	p.P307L	1.000	67	1.5%	75	21.3%	0	-	possibly_damaging(0.521)	tolerated(0.2)	neutral(0.224)	HMMPfam_7tm_1,superfamily_SSF81321
CDC40	51362	genome.wustl.edu	37	6	110536510	110536510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015891.2	+1	reviewed	p.R322W	1.000	153	0%	123	26.8%	12	41.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
DDO	8528	genome.wustl.edu	37	6	110736704	110736704	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003649.2	-1	reviewed	p.F16V	0.247	95	0%	69	21.7%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
REV3L	5980	genome.wustl.edu	37	6	111698985	111698985	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002912.3	-1	validated	p.E506*	1.000	118	0%	104	30.8%	0	-	-	-	-	superfamily_Ribonuclease H-like
LAMA4	3910	genome.wustl.edu	37	6	112437132	112437132	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105206.1	-1	reviewed	p.S1682	0.046	410	0%	325	27.4%	62	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
RFPL4B	442247	genome.wustl.edu	37	6	112671283	112671283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013734.2	+1	validated	p.D125N	0.000	110	0%	94	26.6%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	HMMSmart_PRY
RFPL4B	442247	genome.wustl.edu	37	6	112671668	112671668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013734.2	+1	validated	p.G253E	0.000	134	0%	105	22.9%	0	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
HDAC2	3066	genome.wustl.edu	37	6	114274479	114274479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001527.3	-1	reviewed	p.K295E	1.000	289	0%	237	26.2%	147	53%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
HS3ST5	222537	genome.wustl.edu	37	6	114378489	114378489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153612.3	-1	validated	p.R325C	1.000	200	0%	190	32.1%	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
HS3ST5	222537	genome.wustl.edu	37	6	114378706	114378706	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153612.3	-1	validated	p.V252	0.305	221	0%	229	32.3%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
FRK	2444	genome.wustl.edu	37	6	116289827	116289827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002031.2	-1	reviewed	p.R181I	0.000	322	0%	193	34.2%	1	100%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
FRK	2444	genome.wustl.edu	37	6	116289833	116289833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002031.2	-1	reviewed	p.R179Q	0.001	317	0%	193	26.4%	1	0%	benign(0.035)	tolerated(0.66)	neutral(0.005)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
FRK	2444	genome.wustl.edu	37	6	116381176	116381176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002031.2	-1	reviewed	p.I100T	1.000	439	0%	396	30.1%	3	100%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
NT5DC1	221294	genome.wustl.edu	37	6	116542303	116542303	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152729.2	+1	reviewed	p.R206*	0.174	159	0%	112	17%	26	0%	-	-	-	HMMPfam_5_nucleotid
FAM26F	441168	genome.wustl.edu	37	6	116784509	116784509	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010919.1	+1	predicted	p.R197*	0.001	325	0%	211	30.8%	14	0%	-	-	-	NULL
RSPH4A	345895	genome.wustl.edu	37	6	116938316	116938316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010892.2	+1	reviewed	p.R177I	0.019	253	0%	212	30.7%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ZUFSP	221302	genome.wustl.edu	37	6	116988270	116988270	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145062.2	-1	validated	p.I29S	0.950	143	0%	125	28%	2	50%	benign(0.069)	tolerated(0.21)	neutral(0.048)	HMMSmart_SM00355
KPNA5	3841	genome.wustl.edu	37	6	117019946	117019946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002269.2	+1	reviewed	p.E140D	0.937	70	0%	61	31.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ROS1	6098	genome.wustl.edu	37	6	117609954	117609954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002944.2	-1	reviewed	p.D2249N	0.000	103	0%	84	22.6%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
ROS1	6098	genome.wustl.edu	37	6	117641093	117641093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002944.2	-1	reviewed	p.Y1960H	1.000	263	0%	221	33.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP
ROS1	6098	genome.wustl.edu	37	6	117677962	117677962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002944.2	-1	reviewed	p.R1324M	0.000	349	0%	339	33.3%	0	-	benign(0.029)	deleterious(0.01)	neutral(0.407)	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117718123	117718123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002944.2	-1	reviewed	p.R245I	1.000	367	0%	293	29%	0	-	possibly_damaging(0.66)	tolerated(0.1)	deleterious(0.519)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
DCBLD1	285761	genome.wustl.edu	37	6	117842709	117842709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173674.1	+1	provisional	p.R161Q	1.000	70	0%	58	32.8%	11	36.3%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
GOPC	57120	genome.wustl.edu	37	6	117896453	117896453	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020399.2	-1	validated	p.V179	1.000	119	0%	127	29.9%	12	66.6%	-	-	-	NULL
CEP85L	387119	genome.wustl.edu	37	6	118844998	118844998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042475.2	-1	validated	p.G369E	1.000	212	0.5%	120	35.8%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
FAM184A	79632	genome.wustl.edu	37	6	119282996	119282996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024581.4	-1	validated	p.D1091N	1.000	188	0%	192	21.9%	0	-	possibly_damaging(0.708)	tolerated(0.28)	neutral(0.287)	NULL
FAM184A	79632	genome.wustl.edu	37	6	119345663	119345663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024581.4	-1	validated	p.E159K	1.000	256	0%	220	30%	0	-	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	NULL
MAN1A1	4121	genome.wustl.edu	37	6	119511012	119511012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005907.2	-1	reviewed	p.G455R	1.000	115	0%	106	32.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
C6orf170	221322	genome.wustl.edu	37	6	121433702	121433702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152730.4	-1	validated	p.F1091L	1.000	162	0%	128	35.2%	2	0%	probably_damaging(0.987)	tolerated(0.47)	neutral(0.448)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121563366	121563366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152730.4	-1	validated	p.R713Q	0.730	190	0%	144	24.3%	1	100%	benign(0.014)	tolerated(0.56)	neutral(0.007)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121605032	121605032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152730.4	-1	validated	p.L466R	0.983	195	0%	108	25%	1	100%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121613199	121613199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152730.4	-1	validated	p.G458C	1.000	131	0%	120	36.7%	0	-	probably_damaging(0.973)	tolerated(0.18)	deleterious(0.471)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121624769	121624769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152730.4	-1	validated	p.K358N	0.999	110	0%	82	31.7%	2	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121624897	121624897	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152730.4	-1	validated	p.E316*	1.000	121	0%	76	26.3%	0	-	-	-	-	NULL
C6orf170	221322	genome.wustl.edu	37	6	121655468	121655468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152730.4	-1	validated	p.E37K	1.000	101	0%	67	32.8%	1	0%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
SMPDL3A	10924	genome.wustl.edu	37	6	123126165	123126165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006714.3	+1	validated	p.D284Y	0.000	204	0%	184	37%	2	100%	benign(0.383)	deleterious(0.03)	deleterious(0.487)	HMMPfam_Metallophos,superfamily_SSF56300
NCOA7	135112	genome.wustl.edu	37	6	126206363	126206363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181782.3	+1	validated	p.K253T	1.000	303	0%	298	26.2%	2	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_GRAM
RSPO3	84870	genome.wustl.edu	37	6	127440394	127440394	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032784.3	+1	reviewed	p.I19	1.000	142	0%	119	28.6%	1	0%	-	-	-	superfamily_Growth factor receptor domain
RNF146	81847	genome.wustl.edu	37	6	127608668	127608668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030963.2	+1	provisional	p.A303T	0.998	190	0%	204	28.4%	38	42.1%	benign(0.042)	tolerated(0.15)	neutral(0.243)	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127767827	127767827	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014702.4	-1	validated	p.N546T	1.000	118	0%	102	22.5%	1	0%	benign(0.154)	tolerated(0.43)	neutral(0.027)	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127771029	127771029	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014702.4	-1	validated	p.A172	1.000	254	0%	246	27.2%	0	-	-	-	-	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127771309	127771309	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014702.4	-1	validated	p.E108	0.000	259	0.4%	225	28.9%	0	-	-	-	-	NULL
LOC100287918	100287918	genome.wustl.edu	37	6	127981347	127981347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342669.1	+1	model	p.K129T	0.330	22	0%	25	24%	0	-	-	-	-	NULL
THEMIS	387357	genome.wustl.edu	37	6	128221985	128221985	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010923.2	-1	reviewed	e1+2	1.000	217	0%	123	17.1%	0	-	-	-	-	-
PTPRK	5796	genome.wustl.edu	37	6	128304034	128304034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135648.1	-1	validated	p.F1166C	1.000	219	0%	113	49.6%	15	100%	possibly_damaging(0.776)	deleterious(0.02)	deleterious(0.672)	superfamily_SSF52799
PTPRK	5796	genome.wustl.edu	37	6	128505654	128505654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135648.1	-1	validated	p.R362Q	1.000	165	0%	123	27.6%	4	25%	possibly_damaging(0.938)	tolerated(0.06)	deleterious(0.706)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
LAMA2	3908	genome.wustl.edu	37	6	129371200	129371200	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.R84*	1.000	132	0%	115	23.5%	0	-	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
LAMA2	3908	genome.wustl.edu	37	6	129573286	129573286	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.E648*	1.000	125	0%	69	31.9%	0	-	-	-	-	HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB
LAMA2	3908	genome.wustl.edu	37	6	129588356	129588356	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.E772*	1.000	494	0%	425	30.6%	2	0%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,superfamily_SSF57196
LAMA2	3908	genome.wustl.edu	37	6	129618885	129618885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.S971Y	1.000	94	1.1%	62	12.9%	0	-	possibly_damaging(0.885)	tolerated(0.28)	neutral(0.377)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,superfamily_SSF57196
LAMA2	3908	genome.wustl.edu	37	6	129635892	129635892	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.C1168	1.000	70	0%	54	29.6%	1	0%	-	-	-	PatternScan_EGF_LAM_1,superfamily_ConA_like_lec_gl
LAMA2	3908	genome.wustl.edu	37	6	129762128	129762128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.D2085N	1.000	70	0%	75	28%	1	0%	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_II
LAMA2	3908	genome.wustl.edu	37	6	129786341	129786341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.D2403N	1.000	111	0%	119	27.7%	2	0%	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
LAMA2	3908	genome.wustl.edu	37	6	129802525	129802525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.L2564I	0.994	280	0.4%	190	32.6%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
LAMA2	3908	genome.wustl.edu	37	6	129813196	129813196	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.C2683	0.038	263	0%	226	13.3%	5	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
LAMA2	3908	genome.wustl.edu	37	6	129835546	129835546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000426.3	+1	reviewed	p.G3006D	1.000	89	0%	102	24.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
ARHGAP18	93663	genome.wustl.edu	37	6	129921960	129921960	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033515.2	-1	validated	p.N467H	1.000	155	0%	212	26.9%	4	0%	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP18	93663	genome.wustl.edu	37	6	129937418	129937418	+	Missense_Mutation	SNP	G	G	A	rs191935343	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033515.2	-1	validated	p.A328V	0.082	38	0%	43	18.6%	4	0%	benign(0)	tolerated(1)	-	superfamily_GTPase activation domain GAP
TMEM244	253582	genome.wustl.edu	37	6	130154682	130154682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010876.1	-1	provisional	p.F81S	0.890	325	0%	191	20.9%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
EPB41L2	2037	genome.wustl.edu	37	6	131216189	131216189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001431.3	-1	validated	p.R436Q	1.000	394	0%	296	29.4%	22	22.7%	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	HMMPfam_FERM_C,superfamily_SSF50729
AKAP7	9465	genome.wustl.edu	37	6	131481229	131481229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016377.2	+1	reviewed	p.R39I	0.017	97	0%	108	27.8%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_AKAP7_NLS
AKAP7	9465	genome.wustl.edu	37	6	131520602	131520602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016377.2	+1	reviewed	p.E175D	0.965	89	0%	84	40.5%	2	50%	benign(0.005)	tolerated(0.35)	neutral(0.021)	superfamily_LigT-like,HMMPfam_AKAP7_NLS
ENPP3	5169	genome.wustl.edu	37	6	131962598	131962598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005021.3	+1	reviewed	p.L28I	1.000	107	0%	106	14.2%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
ENPP3	5169	genome.wustl.edu	37	6	131974028	131974028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005021.3	+1	reviewed	p.E154G	0.960	123	0%	93	28%	0	-	benign(0.025)	tolerated(0.08)	neutral(0.301)	superfamily_Alkaline_phosphatase_core
ENPP3	5169	genome.wustl.edu	37	6	132006581	132006581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005021.3	+1	reviewed	p.E400K	0.999	332	0%	282	28.7%	0	-	benign(0.245)	tolerated(0.88)	neutral(0.025)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP3	5169	genome.wustl.edu	37	6	132068063	132068063	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005021.3	+1	reviewed	p.K865	1.000	254	0%	188	23.9%	2	0%	-	-	-	superfamily_SSF54060
ENPP1	5167	genome.wustl.edu	37	6	132193231	132193231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006208.2	+1	reviewed	p.R476Q	0.997	304	0%	232	32.8%	0	-	possibly_damaging(0.657)	tolerated(0.41)	neutral(0.246)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
MOXD1	26002	genome.wustl.edu	37	6	132649723	132649723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015529.2	-1	validated	p.V225A	0.985	89	0%	69	26.1%	8	0%	benign(0.103)	deleterious(0.01)	neutral(0.414)	HMMPfam_Cu2_monooxygen,superfamily_PHM/PNGase F
TAAR9	134860	genome.wustl.edu	37	6	132859520	132859520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175057.3	+1	reviewed	p.P31H	0.056	92	0%	93	30.1%	0	-	benign(0.027)	deleterious(0.01)	neutral(0.407)	superfamily_Family A G protein-coupled receptor-like
TAAR6	319100	genome.wustl.edu	37	6	132892156	132892156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175067.1	+1	reviewed	p.E232D	0.001	158	0%	193	35.8%	0	-	probably_damaging(0.999)	tolerated(0.83)	deleterious(0.491)	HMMPfam_7tm_1,superfamily_SSF81321
TAAR5	9038	genome.wustl.edu	37	6	132910545	132910545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003967.2	-1	validated	p.R94H	0.306	136	0%	147	31.3%	0	-	benign(0.015)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
TAAR1	134864	genome.wustl.edu	37	6	132966342	132966342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138327.1	-1	provisional	p.F267L	1.000	451	0%	306	30.7%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
TAAR1	134864	genome.wustl.edu	37	6	132966508	132966508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138327.1	-1	provisional	p.R212I	1.000	380	0%	295	28.5%	0	-	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMPfam_7tm_1,superfamily_SSF81321
VNN1	8876	genome.wustl.edu	37	6	133014313	133014313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004666.2	-1	reviewed	p.D226Y	0.871	173	0%	134	35.8%	0	-	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse
VNN2	8875	genome.wustl.edu	37	6	133078869	133078869	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004665.2	-1	reviewed	p.N52H	0.000	223	0%	217	19.4%	0	-	benign(0.098)	tolerated(0.11)	neutral(0.279)	superfamily_Ntlse/CNhydtse
EYA4	2070	genome.wustl.edu	37	6	133802609	133802609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004100.4	+1	reviewed	p.D327N	1.000	421	0%	341	28.7%	0	-	possibly_damaging(0.455)	tolerated(0.68)	neutral(0.151)	NULL
SGK1	6446	genome.wustl.edu	37	6	134494254	134494254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143676.1	-1	reviewed	p.K247N	1.000	265	0%	221	30.3%	5	60%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ALDH8A1	64577	genome.wustl.edu	37	6	135239673	135239673	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022568.2	-1	reviewed	p.W448*	1.000	53	0%	72	29.2%	0	-	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
MYB	4602	genome.wustl.edu	37	6	135515551	135515551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130173.1	+1	reviewed	p.L301F	1.000	149	0%	131	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Wos2
MYB	4602	genome.wustl.edu	37	6	135518458	135518458	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130173.1	+1	reviewed	p.S521	1.000	140	0%	137	30.7%	2	0%	-	-	-	HMMPfam_Cmyb_C
PDE7B	27115	genome.wustl.edu	37	6	136268611	136268611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018945.3	+1	reviewed	p.E11K	1.000	114	0%	91	31.9%	1	0%	possibly_damaging(0.829)	tolerated(0.07)	deleterious(0.633)	NULL
PDE7B	27115	genome.wustl.edu	37	6	136472385	136472385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018945.3	+1	reviewed	p.R157Q	1.000	129	0%	104	27.9%	0	-	possibly_damaging(0.49)	tolerated(0.1)	neutral(0.450)	superfamily_HD-domain/PDEase-like
MAP3K5	4217	genome.wustl.edu	37	6	136904818	136904818	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.E1096*	1.000	205	0%	192	33.9%	2	0%	-	-	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136904864	136904864	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.P1080	0.170	221	0%	210	33.3%	2	50%	-	-	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136913591	136913591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.R1014W	0.960	264	0.4%	255	33.3%	5	80%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136923006	136923006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.D931N	1.000	177	0%	133	35.3%	2	0%	benign(0.034)	deleterious(0.03)	neutral(0.366)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAP3K5	4217	genome.wustl.edu	37	6	136977484	136977484	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.V547	0.023	310	0%	306	29.1%	4	25%	-	-	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	137015401	137015401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.P377L	1.000	125	0%	94	33%	2	0%	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	137018434	137018434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.R300W	1.000	204	0%	202	28.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	137041721	137041721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.A152V	1.000	128	0.8%	109	31.2%	3	0%	probably_damaging(0.973)	tolerated(0.23)	neutral(0.456)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	137112939	137112939	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005923.3	-1	reviewed	p.A119	1.000	42	0%	43	25.6%	1	0%	-	-	-	NULL
OLIG3	167826	genome.wustl.edu	37	6	137815034	137815034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175747.2	-1	provisional	p.E92K	1.000	54	0%	61	36.1%	0	-	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
KIAA1244	57221	genome.wustl.edu	37	6	138644882	138644882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020340.4	+1	validated	p.A1614V	1.000	167	0%	120	30%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
KIAA1244	57221	genome.wustl.edu	37	6	138655752	138655752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020340.4	+1	validated	p.E1923D	0.036	65	0%	64	32.8%	0	-	benign(0.252)	tolerated(0.41)	neutral(0.041)	NULL
ECT2L	345930	genome.wustl.edu	37	6	139206668	139206668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077706.1	+1	validated	p.R685Q	1.000	185	0%	124	34.7%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ECT2L	345930	genome.wustl.edu	37	6	139223733	139223733	+	Missense_Mutation	SNP	G	G	A	rs181439920	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077706.1	+1	validated	p.R895Q	0.134	142	0%	117	29.9%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF50729
REPS1	85021	genome.wustl.edu	37	6	139262578	139262578	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031922.3	-1	validated	p.F343L	1.000	332	0%	322	28.9%	12	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_EH,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
HIVEP2	3097	genome.wustl.edu	37	6	143089655	143089655	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006734.3	-1	provisional	p.F1736I	0.998	113	0%	122	27%	4	75%	possibly_damaging(0.903)	tolerated(0.56)	neutral(0.364)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143093194	143093194	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006734.3	-1	provisional	p.T894	0.002	69	0%	65	35.4%	2	50%	-	-	-	NULL
LTV1	84946	genome.wustl.edu	37	6	144183355	144183355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032860.3	+1	provisional	p.E346D	1.000	206	0%	131	28.2%	22	45.4%	possibly_damaging(0.757)	tolerated(0.23)	neutral(0.321)	HMMPfam_LTV
UTRN	7402	genome.wustl.edu	37	6	144745220	144745220	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000421035	+1	known	e5+2	0.001	188	0%	159	34%	0	-	-	-	-	-
UTRN	7402	genome.wustl.edu	37	6	144800952	144800952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007124.2	+1	reviewed	p.A1114D	0.316	250	0%	188	25.5%	4	25%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144858824	144858824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007124.2	+1	reviewed	p.E2114K	0.009	313	0%	203	26.1%	5	20%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMSmart_SPEC,superfamily_Spectrin
EPM2A	7957	genome.wustl.edu	37	6	145948598	145948598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005670.3	-1	reviewed	p.F317C	0.998	255	0.4%	180	27.2%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
GRM1	2911	genome.wustl.edu	37	6	146351009	146351009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000838.3	+1	reviewed	p.S119N	1.000	88	0%	89	30.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM1	2911	genome.wustl.edu	37	6	146747736	146747736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114329.1	+1	reviewed	p.S901L	1.000	50	0%	45	28.9%	0	-	unknown(0)	tolerated(0.15)	-	NULL
GRM1	2911	genome.wustl.edu	37	6	146755687	146755687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000838.3	+1	reviewed	p.E1114K	1.000	93	0%	101	31.7%	0	-	benign(0.073)	tolerated(0.14)	neutral(0.255)	NULL
STXBP5	134957	genome.wustl.edu	37	6	147684764	147684764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127715.1	+1	reviewed	p.R947C	1.000	186	0%	147	27.9%	7	28.5%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
SAMD5	389432	genome.wustl.edu	37	6	147885589	147885589	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001030060.2	+1	validated	p.R173	1.000	239	0%	200	26.5%	0	-	-	-	-	NULL
SASH1	23328	genome.wustl.edu	37	6	148835568	148835568	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015278.3	+1	validated	p.E280*	1.000	41	0%	35	37.1%	0	-	-	-	-	NULL
ZC3H12D	340152	genome.wustl.edu	37	6	149795589	149795589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207360.2	-1	validated	p.A31T	0.983	39	0%	34	32.4%	3	0%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	NULL
IYD	389434	genome.wustl.edu	37	6	150715304	150715304	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203395.2	+1	reviewed	p.G200	0.000	140	0%	133	17.3%	0	-	-	-	-	HMMPfam_Nitroreductase,superfamily_FMN-dependent nitroreductase-like
PLEKHG1	57480	genome.wustl.edu	37	6	151130806	151130806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029884.1	+1	provisional	p.R405H	1.000	58	0%	89	33.7%	3	66.6%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PLEKHG1	57480	genome.wustl.edu	37	6	151153217	151153217	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029884.1	+1	provisional	p.A990	0.967	237	0%	188	27.1%	12	33.3%	-	-	-	NULL
AKAP12	9590	genome.wustl.edu	37	6	151671079	151671079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005100.3	+1	reviewed	p.K518T	1.000	280	0%	316	29.1%	10	60%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RMND1	55005	genome.wustl.edu	37	6	151744667	151744667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000367299	-1	known	p.P2S	0.999	157	0%	131	29%	23	30.4%	unknown(0)	deleterious(0)	-	HMMPfam_DUF155
C6orf97	80129	genome.wustl.edu	37	6	151894524	151894524	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025059.3	+1	validated	p.I330	0.001	101	0%	92	33.7%	1	100%	-	-	-	NULL
C6orf97	80129	genome.wustl.edu	37	6	151907125	151907125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025059.3	+1	validated	p.E398D	0.714	53	0%	61	32.8%	2	50%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ESR1	2099	genome.wustl.edu	37	6	152201885	152201885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000125.3	+1	reviewed	p.E247K	1.000	90	0%	77	31.2%	13	38.4%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SYNE1	23345	genome.wustl.edu	37	6	152529232	152529232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.R7567C	1.000	212	0%	157	23.6%	2	0%	possibly_damaging(0.468)	tolerated(0.2)	neutral(0.203)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152602996	152602996	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.A6109	0.000	107	0%	85	41.2%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152651599	152651599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.R4741C	0.984	125	0%	118	34.7%	0	-	probably_damaging(1)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152671317	152671317	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.L3963	0.939	108	0%	72	37.5%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152683320	152683320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.M3428I	0.006	114	0%	99	27.3%	0	-	benign(0)	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152697980	152697980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.L3026R	1.000	177	0%	136	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152720815	152720815	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.A2391	0.123	293	0%	264	29.5%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152749438	152749438	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.V1626	0.001	223	0%	176	31.8%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152765684	152765684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.D1233E	0.983	87	0%	66	10.6%	0	-	benign(0.001)	tolerated(1)	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152768615	152768615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.A1216V	0.612	70	0%	68	29.4%	0	-	benign(0.313)	tolerated(0.22)	neutral(0.140)	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152826487	152826487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.S209	0.157	154	1.3%	158	32.9%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
SYNE1	23345	genome.wustl.edu	37	6	152847310	152847310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182961.2	-1	reviewed	p.R44W	1.000	154	0%	118	25.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MYCT1	80177	genome.wustl.edu	37	6	153019140	153019140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025107.2	+1	validated	p.L35I	0.033	88	0%	75	34.7%	0	-	benign(0.051)	deleterious(0)	neutral(0.448)	NULL
MYCT1	80177	genome.wustl.edu	37	6	153042956	153042956	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025107.2	+1	validated	p.C92	0.619	216	0%	234	24.8%	3	0%	-	-	-	NULL
OPRM1	4988	genome.wustl.edu	37	6	154412548	154412548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145279.1	+1	reviewed	p.R462C	0.995	174	0%	184	33.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_SSF81321
SCAF8	22828	genome.wustl.edu	37	6	155095158	155095158	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014892.3	+1	validated	p.S22	1.000	366	0%	253	32.8%	3	0%	-	-	-	HMMSmart_RPR,superfamily_ENTH_VHS
SCAF8	22828	genome.wustl.edu	37	6	155129920	155129920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014892.3	+1	validated	p.R405Q	1.000	143	0%	150	30%	12	25%	unknown(0)	deleterious(0.02)	-	NULL
SYNJ2	8871	genome.wustl.edu	37	6	158495616	158495616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003898.3	+1	reviewed	p.R713I	0.883	162	0%	134	26.1%	3	33.3%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
TULP4	56995	genome.wustl.edu	37	6	158900820	158900820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020245.3	+1	validated	p.S355L	0.000	121	0%	120	32.5%	4	100%	benign(0.277)	tolerated(0.22)	neutral(0.072)	superfamily_TNF-like,superfamily_WD40 repeat-like
TMEM181	57583	genome.wustl.edu	37	6	159049478	159049478	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020823.1	+1	validated	p.L520R	0.909	63	0%	61	34.4%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EZR	7430	genome.wustl.edu	37	6	159192358	159192358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001111077.1	-1	reviewed	p.R293C	1.000	86	0%	54	35.2%	468	48.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_FERM_C,superfamily_SSF50729
TAGAP	117289	genome.wustl.edu	37	6	159457586	159457586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_054114.3	-1	reviewed	p.S490Y	1.000	157	0%	132	31.8%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TAGAP	117289	genome.wustl.edu	37	6	159465153	159465153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_054114.3	-1	reviewed	p.A9V	0.846	119	0%	86	33.7%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
FNDC1	84624	genome.wustl.edu	37	6	159653677	159653677	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000329629	+1	known	p.C607R	0.000	38	0%	27	33.3%	7	0%	-	-	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159655082	159655082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032532.2	+1	validated	p.D1180N	1.000	24	0%	18	22.2%	9	0%	unknown(0)	deleterious(0.01)	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159657316	159657316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032532.2	+1	validated	p.R1346I	1.000	62	0%	31	19.4%	8	0%	unknown(0)	deleterious(0)	-	NULL
PNLDC1	154197	genome.wustl.edu	37	6	160230077	160230077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173516.1	+1	provisional	p.R213C	0.998	186	0.5%	119	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
MAS1	4142	genome.wustl.edu	37	6	160328573	160328573	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002377.2	+1	reviewed	p.F196V	1.000	151	0%	186	36%	0	-	possibly_damaging(0.943)	tolerated(0.17)	neutral(0.447)	HMMPfam_7tm_1,superfamily_SSF81321
IGF2R	3482	genome.wustl.edu	37	6	160431794	160431794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000876.2	+1	reviewed	p.D164Y	0.993	151	0%	85	21.2%	2	50%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_CIMR
IGF2R	3482	genome.wustl.edu	37	6	160481681	160481681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000876.2	+1	reviewed	p.R1065Q	0.433	155	0%	107	12.1%	15	0%	possibly_damaging(0.854)	tolerated(0.25)	neutral(0.366)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
SLC22A2	6582	genome.wustl.edu	37	6	160679514	160679514	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003058.2	-1	reviewed	p.Y92	0.982	82	0%	62	37.1%	0	-	-	-	-	NULL
SLC22A3	6581	genome.wustl.edu	37	6	160831780	160831780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021977.2	+1	reviewed	p.R293C	1.000	133	0%	155	32.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
LPA	4018	genome.wustl.edu	37	6	160968967	160968967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005577.2	-1	reviewed	p.C1720R	1.000	268	0%	180	22.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
LPA	4018	genome.wustl.edu	37	6	161012008	161012008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005577.2	-1	reviewed	p.V1252A	0.014	137	0%	126	27.8%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	superfamily_Kringle-like
LPA	4018	genome.wustl.edu	37	6	161026190	161026190	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005577.2	-1	reviewed	p.G945*	0.096	737	0%	709	29.6%	0	-	-	-	-	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
PLG	5340	genome.wustl.edu	37	6	161135910	161135910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000301.3	+1	reviewed	p.S211F	0.672	95	0%	81	28.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
PLG	5340	genome.wustl.edu	37	6	161155113	161155113	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000301.3	+1	reviewed	p.P558	0.870	121	0%	79	26.6%	0	-	-	-	-	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
PLG	5340	genome.wustl.edu	37	6	161173182	161173182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000301.3	+1	reviewed	p.L721F	1.000	141	0%	179	35.8%	0	-	benign(0.033)	tolerated(0.27)	neutral(0.035)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MAP3K4	4216	genome.wustl.edu	37	6	161469743	161469743	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005922.2	+1	reviewed	p.R147G	0.984	391	0%	226	24.8%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
MAP3K4	4216	genome.wustl.edu	37	6	161469974	161469974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005922.2	+1	reviewed	p.K224Q	1.000	174	0%	135	26.7%	3	100%	probably_damaging(1)	tolerated(0.46)	deleterious(0.512)	NULL
MAP3K4	4216	genome.wustl.edu	37	6	161470515	161470515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005922.2	+1	reviewed	p.N404T	0.992	248	0%	170	34.1%	3	33.3%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
AGPAT4	56895	genome.wustl.edu	37	6	161575188	161575188	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020133.2	-1	reviewed	p.K168T	1.000	85	0%	37	21.6%	6	0%	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
PARK2	5071	genome.wustl.edu	37	6	162864476	162864476	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004562.2	-1	reviewed	p.F13V	0.765	182	0.5%	201	31.8%	1	100%	benign(0.293)	tolerated(0.21)	neutral(0.135)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
PDE10A	10846	genome.wustl.edu	37	6	165832172	165832172	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130690.1	-1	validated	p.G317*	0.967	152	0%	94	24.5%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
PDE10A	10846	genome.wustl.edu	37	6	165957065	165957065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000392126	-1	known	p.S9Y	0.995	126	0%	115	33%	0	-	benign(0.095)	tolerated(0.3)	neutral(0.036)	NULL
T	6862	genome.wustl.edu	37	6	166580208	166580208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003181.2	-1	reviewed	p.P115T	1.000	33	0%	32	50%	0	-	benign(0.048)	deleterious(0)	neutral(0.448)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
RPS6KA2	6196	genome.wustl.edu	37	6	166845950	166845950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001006932.1	-1	reviewed	p.S462L	0.998	47	0%	34	35.3%	7	57.1%	benign(0.009)	deleterious(0.03)	neutral(0.365)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RNASET2	8635	genome.wustl.edu	37	6	167352375	167352375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000477674	-1	known	p.R161C	0.000	52	0%	60	25%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Ribonuclease_T2
TCP10L2	401285	genome.wustl.edu	37	6	167591986	167591986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145121.1	+1	inferred	p.P205S	0.000	112	0%	91	29.7%	0	-	probably_damaging(0.959)	tolerated(0.28)	neutral(0.434)	NULL
UNC93A	54346	genome.wustl.edu	37	6	167728741	167728741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018974.3	+1	validated	p.A392V	0.999	176	0%	130	29.2%	3	0%	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	superfamily_MFS_gen_substrate_transporter
TTLL2	83887	genome.wustl.edu	37	6	167754909	167754909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031949.4	+1	validated	p.S507R	0.016	140	0%	215	36.7%	0	-	possibly_damaging(0.836)	deleterious(0.04)	deleterious(0.668)	NULL
TTLL2	83887	genome.wustl.edu	37	6	167754996	167754996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031949.4	+1	validated	p.K536N	0.000	171	0%	254	33.5%	0	-	benign(0.312)	tolerated(0.19)	neutral(0.147)	NULL
TCP10	6953	genome.wustl.edu	37	6	167787872	167787872	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004610.3	-1	validated	p.F252	0.000	77	0%	50	22%	0	-	-	-	-	HMMPfam_Tcp10_C
MLLT4	4301	genome.wustl.edu	37	6	168347514	168347514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040001.1	+1	validated	p.K1154N	1.000	359	0%	247	26.3%	14	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168363250	168363250	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000476946	+1	known	p.L126*	0.814	151	0%	163	31.9%	1	0%	-	-	-	NULL
KIF25	3834	genome.wustl.edu	37	6	168440858	168440858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030615.2	+1	reviewed	p.T203M	0.033	25	0%	21	38.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR27	253769	genome.wustl.edu	37	6	170068256	170068256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182552.3	-1	validated	p.E161A	0.000	50	0%	48	25%	0	-	benign(0.429)	deleterious(0)	deleterious(0.584)	superfamily_WD40 repeat-like
FAM120B	84498	genome.wustl.edu	37	6	170697546	170697546	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032448.1	+1	provisional	p.K819Q	0.008	115	0%	95	26.3%	7	71.4%	probably_damaging(0.995)	tolerated(0.49)	neutral(0.468)	NULL
GNA12	2768	genome.wustl.edu	37	7	2770828	2770828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007353.2	-1	validated	p.I378S	0.965	38	0%	26	42.3%	20	30%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_G-alpha
CARD11	84433	genome.wustl.edu	37	7	2954933	2954933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032415.3	-1	validated	p.P926L	0.378	32	0%	14	42.9%	1	0%	benign(0.03)	deleterious(0.01)	neutral(0.407)	NULL
CARD11	84433	genome.wustl.edu	37	7	2962374	2962374	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032415.3	-1	validated	p.G721	0.848	40	0%	25	28%	1	0%	-	-	-	HMMSmart_PDZ,superfamily_PDZ
CARD11	84433	genome.wustl.edu	37	7	2962960	2962960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032415.3	-1	validated	p.R650W	1.000	33	0%	24	41.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SDK1	221935	genome.wustl.edu	37	7	4014109	4014109	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152744.3	+1	validated	p.I642	0.998	69	0%	49	12.2%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PAPOLB	56903	genome.wustl.edu	37	7	4900243	4900243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020144.4	-1	validated	p.R400Q	1.000	807	0%	614	17.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP_RNA-bind,superfamily_PAP_C
PAPOLB	56903	genome.wustl.edu	37	7	4901062	4901062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020144.4	-1	validated	p.R127Q	0.535	103	0%	103	11.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NTP_transf_2,HMMPfam_PAP_central,superfamily_SSF81301
RBAK	57786	genome.wustl.edu	37	7	5103670	5103670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021163.3	+1	reviewed	p.L195I	0.592	145	0%	146	33.6%	4	100%	possibly_damaging(0.451)	tolerated(0.39)	neutral(0.163)	superfamily_C2H2 and C2HC zinc fingers
RBAK	57786	genome.wustl.edu	37	7	5104656	5104656	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021163.3	+1	reviewed	p.N523K	0.052	206	0%	208	30.8%	2	0%	possibly_damaging(0.648)	tolerated(1)	neutral(0.228)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCZ1	51622	genome.wustl.edu	37	7	5940179	5940179	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015622.5	+1	validated	p.E98D	0.765	97	0%	79	29.1%	29	13.7%	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMPfam_DUF2049
RSPH10B	222967	genome.wustl.edu	37	7	5967840	5967840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173565.3	-1	validated	p.E807K	0.811	399	0.3%	368	15.5%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
RSPH10B	222967	genome.wustl.edu	37	7	5978439	5978439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173565.3	-1	validated	p.E594K	0.981	293	0%	329	12.2%	0	-	benign(0.07)	tolerated(0.24)	neutral(0.042)	NULL
PMS2	5395	genome.wustl.edu	37	7	6022616	6022616	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000535.5	-1	reviewed	p.T671	0.038	70	0%	78	17.9%	5	40%	-	-	-	NULL
PMS2	5395	genome.wustl.edu	37	7	6026513	6026513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000535.5	-1	reviewed	p.R628Q	0.003	137	0%	140	36.4%	11	36.3%	benign(0.011)	tolerated(0.36)	neutral(0.021)	NULL
EIF2AK1	27102	genome.wustl.edu	37	7	6094179	6094179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014413.3	-1	reviewed	p.K92T	1.000	101	0%	92	33.7%	43	65.1%	benign(0.025)	tolerated(0.09)	neutral(0.297)	NULL
USP42	84132	genome.wustl.edu	37	7	6155006	6155006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032172.2	+1	validated	p.K98N	1.000	260	0%	220	28.6%	2	0%	possibly_damaging(0.559)	tolerated(0.07)	deleterious(0.510)	NULL
USP42	84132	genome.wustl.edu	37	7	6196425	6196425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032172.2	+1	validated	p.A1228T	0.057	73	0%	26	34.6%	9	11.1%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ZDHHC4	55146	genome.wustl.edu	37	7	6621272	6621272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134387.1	+1	validated	p.R51K	1.000	44	0%	43	37.2%	76	52.6%	benign(0.12)	tolerated(0.32)	neutral(0.034)	NULL
RSPH10B2	728194	genome.wustl.edu	37	7	6825601	6825601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099697.1	+1	provisional	p.E594K	0.930	385	0%	345	15.9%	0	-	benign(0.01)	tolerated(0.3)	neutral(0.029)	NULL
CCZ1B	221960	genome.wustl.edu	37	7	6854403	6854403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198097.2	-1	predicted	p.E258K	0.999	101	0%	118	29.7%	63	38%	benign(0.373)	deleterious(0.03)	deleterious(0.483)	HMMPfam_DUF2049
CCZ1B	221960	genome.wustl.edu	37	7	6864171	6864171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198097.2	-1	predicted	p.S76N	1.000	120	0%	105	19%	36	19.4%	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_DUF2049
COL28A1	340267	genome.wustl.edu	37	7	7413128	7413128	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037763.2	-1	validated	p.I803	0.996	155	0%	157	30.6%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL28A1	340267	genome.wustl.edu	37	7	7476037	7476037	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037763.2	-1	validated	p.R617*	1.000	252	0.4%	190	20.5%	0	-	-	-	-	NULL
COL28A1	340267	genome.wustl.edu	37	7	7572463	7572463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037763.2	-1	validated	p.A15V	0.398	295	0.3%	268	26.5%	0	-	benign(0.013)	tolerated(0.36)	neutral(0.021)	NULL
MIOS	54468	genome.wustl.edu	37	7	7612447	7612447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019005.3	+1	validated	p.R114Q	1.000	198	0%	212	23.6%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like
LOC340268	340268	genome.wustl.edu	37	7	9766721	9766721	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_041608.1	+1	model	NULL	1.000	22	0%	21	33.3%	0	-	-	-	-	-
LOC340268	340268	genome.wustl.edu	37	7	9767402	9767402	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_041608.1	+1	model	NULL	0.998	42	0%	29	34.5%	0	-	-	-	-	-
PHF14	9678	genome.wustl.edu	37	7	11022148	11022148	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000303905	+1	known	p.E88*	1.000	51	0%	60	31.7%	6	0%	-	-	-	NULL
PHF14	9678	genome.wustl.edu	37	7	11022692	11022692	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000303905	+1	known	p.K269T	1.000	76	0%	82	29.3%	11	72.7%	benign(0.075)	deleterious(0)	neutral(0.450)	NULL
PHF14	9678	genome.wustl.edu	37	7	11075334	11075334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000303905	+1	known	p.R508I	1.000	272	0%	265	29.1%	26	53.8%	possibly_damaging(0.813)	deleterious(0)	deleterious(0.752)	NULL
PHF14	9678	genome.wustl.edu	37	7	11078433	11078433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000303905	+1	known	p.R676Q	1.000	29	0%	38	28.9%	22	68.1%	possibly_damaging(0.568)	tolerated(0.54)	neutral(0.202)	NULL
THSD7A	221981	genome.wustl.edu	37	7	11450899	11450899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015204.2	-1	validated	p.K1245Q	1.000	113	0%	95	29.5%	4	75%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
TMEM106B	54664	genome.wustl.edu	37	7	12263934	12263934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134232.1	+1	validated	p.D122N	0.993	583	0%	393	24.7%	30	36.6%	benign(0.185)	tolerated(0.5)	neutral(0.027)	HMMPfam_DUF1356
ETV1	2115	genome.wustl.edu	37	7	13949261	13949261	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004956.4	-1	validated	p.F312	0.755	166	0%	167	33.5%	4	0%	-	-	-	HMMPfam_ETS_PEA3_N
DGKB	1607	genome.wustl.edu	37	7	14378214	14378214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004080.2	-1	reviewed	p.R684Q	0.991	174	0%	120	35.8%	0	-	benign(0.122)	tolerated(0.61)	neutral(0.014)	HMMPfam_DAGK_acc,HMMSmart_SM00045
DGKB	1607	genome.wustl.edu	37	7	14613962	14613962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004080.2	-1	reviewed	p.D550Y	1.000	531	0%	420	29.5%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_DAGK_cat,HMMSmart_SM00046
DGKB	1607	genome.wustl.edu	37	7	14775810	14775810	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004080.2	-1	reviewed	p.F60V	1.000	81	0%	52	36.5%	0	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	superfamily_EF-hand
AGMO	392636	genome.wustl.edu	37	7	15599775	15599775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004320.1	-1	provisional	p.R83Q	0.966	211	0%	171	24.6%	0	-	benign(0.054)	tolerated(0.67)	neutral(0.006)	NULL
ANKMY2	57037	genome.wustl.edu	37	7	16649277	16649277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020319.2	-1	validated	p.R287Q	1.000	106	0%	99	26.3%	6	33.3%	possibly_damaging(0.501)	tolerated(0.61)	neutral(0.172)	NULL
ANKMY2	57037	genome.wustl.edu	37	7	16676035	16676035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020319.2	-1	validated	p.R38H	1.000	53	0%	44	34.1%	5	40%	benign(0.003)	tolerated(0.2)	neutral(0.049)	superfamily_Ankyrin repeat
AHR	196	genome.wustl.edu	37	7	17373564	17373564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001621.4	+1	validated	p.Y245C	1.000	138	0%	100	25%	4	0%	benign(0.022)	deleterious(0.01)	neutral(0.407)	NULL
PRPS1L1	221823	genome.wustl.edu	37	7	18066812	18066812	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175886.2	-1	reviewed	p.K198	0.977	286	0%	304	35.5%	0	-	-	-	-	HMMPfam_Pribosyltran,superfamily_PRTase-like
PRPS1L1	221823	genome.wustl.edu	37	7	18066935	18066935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175886.2	-1	reviewed	p.E157D	0.992	276	0%	276	33.7%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Pribosyltran,superfamily_PRTase-like
PRPS1L1	221823	genome.wustl.edu	37	7	18067044	18067044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175886.2	-1	reviewed	p.A121V	0.555	376	0%	350	35.1%	0	-	benign(0.171)	tolerated(0.42)	neutral(0.029)	superfamily_PRTase-like
HDAC9	9734	genome.wustl.edu	37	7	18705844	18705844	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178425.2	+1	reviewed	p.S492	1.000	261	0%	194	29.9%	3	66.6%	-	-	-	NULL
HDAC9	9734	genome.wustl.edu	37	7	18801781	18801781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178425.2	+1	reviewed	p.R682Q	1.000	57	0%	73	32.9%	0	-	probably_damaging(0.988)	tolerated(0.34)	neutral(0.461)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
TWISTNB	221830	genome.wustl.edu	37	7	19738155	19738155	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002926.1	-1	validated	p.A267	0.152	846	0%	623	29.1%	10	40%	-	-	-	NULL
TWISTNB	221830	genome.wustl.edu	37	7	19739785	19739785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002926.1	-1	validated	p.N172S	0.004	264	0%	164	31.7%	2	50%	benign(0.005)	tolerated(0.74)	neutral(0.002)	NULL
MACC1	346389	genome.wustl.edu	37	7	20199187	20199187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182762.3	-1	validated	p.S266L	0.588	115	0%	134	23.9%	1	0%	probably_damaging(0.963)	tolerated(0.11)	deleterious(0.677)	NULL
ABCB5	340273	genome.wustl.edu	37	7	20682942	20682942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000404938	+1	known	p.Q150H	1.000	112	0%	105	27.6%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB5	340273	genome.wustl.edu	37	7	20687674	20687674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000404938	+1	known	p.F393L	0.975	55	0%	60	43.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB5	340273	genome.wustl.edu	37	7	20793077	20793077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178559.5	+1	validated	p.K730R	1.000	141	0%	168	31.5%	0	-	benign(0.184)	tolerated(0.36)	neutral(0.037)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SP4	6671	genome.wustl.edu	37	7	21469946	21469946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003112.3	+1	validated	p.D388A	1.000	77	0%	112	22.3%	1	0%	benign(0.03)	tolerated(0.61)	neutral(0.005)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21654738	21654738	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003777.3	+1	reviewed	p.E1287*	0.780	154	0.6%	117	29.9%	0	-	-	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21818625	21818625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003777.3	+1	reviewed	p.L3136P	0.990	86	0%	71	28.2%	0	-	probably_damaging(0.96)	tolerated(0.18)	neutral(0.459)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21847545	21847545	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003777.3	+1	reviewed	p.E3411*	1.000	37	0%	55	34.5%	0	-	-	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21901560	21901560	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000421290	+1	known	p.H159N	1.000	91	0%	103	22.3%	0	-	-	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21924013	21924013	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003777.3	+1	reviewed	p.F4171	1.000	86	0%	73	27.4%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH11	8701	genome.wustl.edu	37	7	21938987	21938987	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003777.3	+1	reviewed	p.L4368	0.002	259	0%	211	22.3%	0	-	-	-	-	HMMPfam_Dynein_heavy
RAPGEF5	9771	genome.wustl.edu	37	7	22270524	22270524	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012294.3	-1	validated	p.E118*	1.000	17	0%	19	42.1%	0	-	-	-	-	NULL
STK31	56164	genome.wustl.edu	37	7	23811820	23811820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031414.3	+1	reviewed	p.L630I	0.981	229	0%	187	33.7%	0	-	probably_damaging(0.973)	tolerated(0.09)	deleterious(0.712)	NULL
DFNA5	1687	genome.wustl.edu	37	7	24756912	24756912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127453.1	-1	reviewed	p.G220S	0.114	72	0%	54	25.9%	4	0%	benign(0.374)	tolerated(0.61)	neutral(0.123)	HMMPfam_Gasdermin
OSBPL3	26031	genome.wustl.edu	37	7	24846511	24846511	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015550.2	-1	reviewed	p.P776	0.009	192	0.5%	186	30.6%	22	40.9%	-	-	-	HMMPfam_Oxysterol_BP
OSBPL3	26031	genome.wustl.edu	37	7	24870430	24870430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015550.2	-1	reviewed	p.E614A	1.000	446	0%	362	29.6%	22	63.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Oxysterol_BP
NFE2L3	9603	genome.wustl.edu	37	7	26217590	26217590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004289.6	+1	reviewed	p.E200K	0.073	263	0%	222	28.4%	3	66.6%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
NFE2L3	9603	genome.wustl.edu	37	7	26224491	26224491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004289.6	+1	reviewed	p.E391D	1.000	400	0%	309	30.7%	20	0%	possibly_damaging(0.664)	tolerated(0.13)	deleterious(0.487)	NULL
CBX3	11335	genome.wustl.edu	37	7	26246056	26246056	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007276.3	+1	reviewed	p.V31	1.000	99	0%	83	26.5%	135	37.7%	-	-	-	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
HOXA2	3199	genome.wustl.edu	37	7	27140995	27140995	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006735.3	-1	reviewed	p.E161*	1.000	66	0%	49	24.5%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
HOXA6	3203	genome.wustl.edu	37	7	27187201	27187201	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024014.2	-1	reviewed	p.C56	1.000	58	0%	70	28.6%	0	-	-	-	-	NULL
EVX1	2128	genome.wustl.edu	37	7	27284827	27284827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000222761	+1	known	p.R178H	0.057	36	0%	36	33.3%	0	-	possibly_damaging(0.915)	-	-	NULL
ENSG00000248357	0	genome.wustl.edu	37	7	27498135	27498135	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000506075	+1	novel	NULL	1.000	105	0%	120	37.5%	88	0%	-	-	-	-
TAX1BP1	8887	genome.wustl.edu	37	7	27832800	27832800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006024.5	+1	validated	p.Q460R	1.000	69	0%	53	28.3%	59	44%	probably_damaging(0.999)	tolerated(0.46)	deleterious(0.502)	HMMPfam_CALCOCO1
FKBP14	55033	genome.wustl.edu	37	7	30066041	30066041	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017946.2	-1	validated	p.K28N	1.000	127	0%	125	28.8%	14	50%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	superfamily_FKBP-like
PLEKHA8	84725	genome.wustl.edu	37	7	30085979	30085979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032639.2	+1	provisional	p.K104T	1.000	106	0%	75	21.3%	2	100%	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
NOD1	10392	genome.wustl.edu	37	7	30487912	30487912	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006092.2	-1	reviewed	e4+2	1.000	94	0%	50	22%	0	-	-	-	-	-
GARS	2617	genome.wustl.edu	37	7	30665851	30665851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002047.2	+1	reviewed	p.E539K	1.000	51	0%	39	35.9%	227	42.2%	benign(0.001)	tolerated(0.76)	neutral(0.001)	superfamily_Class II aaRS and biotin synthetases
ADCYAP1R1	117	genome.wustl.edu	37	7	31132265	31132265	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001118.3	+1	reviewed	p.F321C	1.000	101	0%	70	22.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
NEUROD6	63974	genome.wustl.edu	37	7	31378271	31378271	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022728.2	-1	provisional	p.Y204*	1.000	187	0%	179	19.6%	0	-	-	-	-	NULL
CCDC129	223075	genome.wustl.edu	37	7	31617523	31617523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194300.2	+1	validated	p.F215L	1.000	89	0%	67	11.9%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
CCDC129	223075	genome.wustl.edu	37	7	31682786	31682786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194300.2	+1	validated	p.G601E	0.005	242	0%	216	29.6%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
CCDC129	223075	genome.wustl.edu	37	7	31683001	31683001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194300.2	+1	validated	p.D673N	0.000	130	0%	109	33%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PDE1C	5137	genome.wustl.edu	37	7	32209402	32209402	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000396193	-1	known	p.S101	0.797	235	0%	192	29.7%	0	-	-	-	-	NULL
AVL9	23080	genome.wustl.edu	37	7	32582761	32582761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015060.1	+1	provisional	p.F34L	1.000	320	0%	293	24.9%	7	14.2%	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_Avl9
KBTBD2	25948	genome.wustl.edu	37	7	32909614	32909614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015483.2	-1	validated	p.E405D	1.000	242	0%	239	28.9%	24	41.6%	possibly_damaging(0.94)	tolerated(0.32)	neutral(0.409)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
NT5C3	51251	genome.wustl.edu	37	7	33057197	33057197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002010.1	-1	reviewed	p.F188V	0.997	201	0%	191	26.2%	20	55%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_UMPH-1,superfamily_HAD-like
ENSG00000251528	0	genome.wustl.edu	37	7	34981293	34981293	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000508348	+1	novel	NULL	0.000	93	0%	60	11.7%	0	-	-	-	-	-
HERPUD2	64224	genome.wustl.edu	37	7	35674865	35674865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022373.4	-1	validated	p.R274Q	1.000	188	0%	186	29.6%	18	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANLN	54443	genome.wustl.edu	37	7	36455472	36455472	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018685.2	+1	validated	p.N501H	0.000	462	0%	367	32.4%	15	26.6%	benign(0.296)	tolerated(0.13)	neutral(0.344)	NULL
AOAH	313	genome.wustl.edu	37	7	36570106	36570106	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001637.3	-1	reviewed	p.L480	1.000	78	0%	122	32%	9	0%	-	-	-	HMMPfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type
AOAH	313	genome.wustl.edu	37	7	36588262	36588262	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001637.3	-1	reviewed	p.P363	0.928	234	0%	161	34.8%	8	0%	-	-	-	HMMPfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type
AOAH	313	genome.wustl.edu	37	7	36616237	36616237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001637.3	-1	reviewed	p.R322C	0.799	236	0%	217	27.6%	8	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type
TXNDC3	51314	genome.wustl.edu	37	7	37901671	37901671	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016616.4	+1	reviewed	p.P104	0.674	141	0%	110	29.1%	0	-	-	-	-	superfamily_Thiordxn-like_fd
TXNDC3	51314	genome.wustl.edu	37	7	37905183	37905183	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016616.4	+1	reviewed	p.E195	0.001	86	0%	80	23.7%	0	-	-	-	-	superfamily_NDK
SFRP4	6424	genome.wustl.edu	37	7	37951790	37951790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003014.3	-1	reviewed	p.S241Y	1.000	120	0%	91	35.2%	81	1.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
TRGJP2	6972	genome.wustl.edu	37	7	38295943	38295943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390334	-1	known	p.R19C	0.001	30	0%	23	34.8%	0	-	unknown(0)	-	-	NULL
TRGV8	6982	genome.wustl.edu	37	7	38370180	38370180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390343	-1	known	p.T40A	0.003	83	0%	111	34.2%	1	0%	possibly_damaging(0.902)	tolerated(0.98)	neutral(0.357)	HMMPfam_V-set,superfamily_SSF48726
AMPH	273	genome.wustl.edu	37	7	38424452	38424452	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000441628	-1	known	p.L568I	0.998	308	0%	252	26.2%	0	-	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain
POU6F2	11281	genome.wustl.edu	37	7	39491186	39491186	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007252.3	+1	reviewed	p.L430	1.000	84	0%	97	32%	0	-	-	-	-	NULL
C7orf10	79783	genome.wustl.edu	37	7	40234576	40234576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000309930	+1	known	p.V141A	0.994	206	0%	192	30.7%	0	-	probably_damaging(0.979)	tolerated(0.13)	deleterious(0.674)	HMMPfam_CoA_transf_3,superfamily_CoA-Trfase_fam_III
C7orf10	79783	genome.wustl.edu	37	7	40535950	40535950	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024728.1	+1	provisional	p.I322L	1.000	44	0%	32	21.9%	8	25%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	superfamily_CoA-Trfase_fam_III
GLI3	2737	genome.wustl.edu	37	7	42007393	42007393	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000168.5	-1	reviewed	p.I744	0.044	166	0%	144	27.8%	0	-	-	-	-	NULL
GLI3	2737	genome.wustl.edu	37	7	42085028	42085028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000168.5	-1	reviewed	p.A261T	0.834	200	0%	162	28.4%	1	0%	possibly_damaging(0.575)	tolerated(0.21)	neutral(0.241)	NULL
HECW1	23072	genome.wustl.edu	37	7	43483983	43483983	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015052.3	+1	validated	p.G404	0.000	34	0%	22	22.7%	0	-	-	-	-	NULL
STK17A	9263	genome.wustl.edu	37	7	43664431	43664431	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004760.2	+1	reviewed	p.F412C	1.000	351	0%	262	32.4%	50	32%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SPDYE1	285955	genome.wustl.edu	37	7	44040654	44040654	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175064.2	+1	validated	p.F10L	0.435	241	0%	340	24.1%	0	-	benign(0.176)	deleterious(0)	neutral(0.461)	NULL
SPDYE1	285955	genome.wustl.edu	37	7	44044751	44044751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175064.2	+1	validated	p.A186V	0.139	603	0%	720	32.2%	0	-	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
YKT6	10652	genome.wustl.edu	37	7	44250719	44250719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006555.3	+1	reviewed	p.K186T	1.000	24	0%	20	35%	96	35.4%	benign(0.012)	tolerated(0.27)	neutral(0.034)	HMMPfam_Synaptobrevin
NPC1L1	29881	genome.wustl.edu	37	7	44575998	44575998	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013389.2	-1	reviewed	p.I571L	0.956	99	0%	105	22.9%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_Patched
NPC1L1	29881	genome.wustl.edu	37	7	44579248	44579248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013389.2	-1	reviewed	p.D250N	0.001	40	0%	39	28.2%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
OGDH	4967	genome.wustl.edu	37	7	44715781	44715781	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003941.2	+1	reviewed	p.I413	0.000	78	0%	85	40%	3	0%	-	-	-	HMMPfam_E1_dh
MYO1G	64005	genome.wustl.edu	37	7	45004047	45004047	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033054.2	-1	validated	p.F866	0.029	54	0%	28	17.9%	21	0%	-	-	-	HMMPfam_Myosin_TH1
RAMP3	10268	genome.wustl.edu	37	7	45222997	45222997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005856.2	+1	reviewed	p.D145N	0.739	59	0%	81	27.2%	17	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_RAMP
ADCY1	107	genome.wustl.edu	37	7	45662327	45662327	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021116.2	+1	reviewed	p.F335	0.998	42	0%	26	34.6%	0	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ADCY1	107	genome.wustl.edu	37	7	45744169	45744169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021116.2	+1	reviewed	p.S924I	1.000	88	0%	70	25.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
IGFBP1	3484	genome.wustl.edu	37	7	45931541	45931541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000596.2	+1	reviewed	p.R177Q	0.553	83	0%	76	23.7%	1	0%	benign(0.022)	tolerated(1)	neutral(0.001)	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain
TNS3	64759	genome.wustl.edu	37	7	47341803	47341803	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022748.10	-1	validated	p.A1175	0.284	98	0%	124	15.3%	36	33.3%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
TNS3	64759	genome.wustl.edu	37	7	47385837	47385837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022748.10	-1	validated	p.V800A	0.003	82	1.2%	73	27.4%	30	30%	benign(0)	tolerated(1)	-	NULL
C7orf69	80099	genome.wustl.edu	37	7	47857722	47857722	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025031.2	+1	validated	p.R69	0.001	96	0%	95	30.5%	0	-	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47876561	47876561	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138295.2	-1	reviewed	p.Y1967	0.003	30	0%	24	41.7%	0	-	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47937671	47937671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138295.2	-1	reviewed	p.L729F	0.482	58	0%	54	18.5%	0	-	possibly_damaging(0.937)	deleterious(0.03)	deleterious(0.748)	HMMPfam_REJ
PKD1L1	168507	genome.wustl.edu	37	7	47944162	47944162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138295.2	-1	reviewed	p.P582S	0.899	65	0%	54	35.2%	0	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	HMMSmart_SM00089
C7orf57	136288	genome.wustl.edu	37	7	48089550	48089550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100159.1	+1	validated	p.G194E	0.021	149	0%	138	26.8%	0	-	possibly_damaging(0.894)	tolerated(0.17)	neutral(0.411)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48285471	48285471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152701.3	+1	reviewed	p.K501N	0.992	76	0%	49	28.6%	2	0%	probably_damaging(0.996)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48308640	48308640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152701.3	+1	reviewed	p.Y690S	0.992	45	0%	22	40.9%	0	-	probably_damaging(0.999)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48317769	48317769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152701.3	+1	reviewed	p.M2326I	0.000	33	0%	27	22.2%	0	-	possibly_damaging(0.586)	-	-	NULL
DDC	1644	genome.wustl.edu	37	7	50531095	50531095	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430300	-1	known	p.E307*	0.948	34	0%	23	17.4%	5	0%	benign(0.196)	deleterious(0)	neutral(0.463)	superfamily_PLP-dependent transferases
COBL	23242	genome.wustl.edu	37	7	51095563	51095563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015198.3	-1	validated	p.G1077E	0.000	119	0%	84	32.1%	4	0%	possibly_damaging(0.796)	deleterious(0.01)	deleterious(0.705)	NULL
COBL	23242	genome.wustl.edu	37	7	51096440	51096440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015198.3	-1	validated	p.E785K	0.000	60	0%	39	20.5%	9	44.4%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	NULL
COBL	23242	genome.wustl.edu	37	7	51251847	51251847	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000452534	-1	known	p.E164*	1.000	23	0%	20	40%	3	0%	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	HMMPfam_Cobl
SEPT14	346288	genome.wustl.edu	37	7	55910726	55910726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207366.2	-1	validated	p.S156Y	0.994	19	0%	22	36.4%	0	-	possibly_damaging(0.824)	deleterious(0)	deleterious(0.756)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF713	349075	genome.wustl.edu	37	7	56006840	56006840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182633.1	+1	provisional	p.E145G	0.719	208	0%	206	29.1%	1	100%	possibly_damaging(0.643)	tolerated(0.39)	neutral(0.241)	NULL
ZNF713	349075	genome.wustl.edu	37	7	56007489	56007489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182633.1	+1	provisional	p.F361L	0.001	171	0%	197	35%	0	-	possibly_damaging(0.662)	tolerated(0.16)	neutral(0.293)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57187600	57187600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033273.1	-1	provisional	p.L508I	0.037	137	0%	184	12%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57188024	57188024	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033273.1	-1	provisional	p.S366	0.000	183	0%	191	29.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57188172	57188172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033273.1	-1	provisional	p.R317K	0.617	209	0%	209	11%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF680	340252	genome.wustl.edu	37	7	63981939	63981939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178558.4	-1	validated	p.R398I	1.000	216	0%	213	33.8%	5	60%	benign(0.026)	tolerated(0.1)	neutral(0.287)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF680	340252	genome.wustl.edu	37	7	63982466	63982466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178558.4	-1	validated	p.F222L	0.001	129	0%	128	27.3%	0	-	benign(0.103)	tolerated(0.64)	neutral(0.011)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF107	51427	genome.wustl.edu	37	7	64167074	64167074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013746.1	+1	validated	p.S131F	0.983	116	0%	139	28.8%	1	0%	benign(0.006)	tolerated(0.26)	neutral(0.034)	superfamily_SSF57667
ZNF107	51427	genome.wustl.edu	37	7	64168363	64168363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013746.1	+1	validated	p.F561V	0.567	204	0%	196	28.1%	0	-	unknown(0)	deleterious(0)	-	superfamily_SSF57667
ZNF138	7697	genome.wustl.edu	37	7	64291883	64291883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006524.2	+1	validated	p.S31Y	0.000	230	0%	211	26.1%	2	100%	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	NULL
ZNF273	10793	genome.wustl.edu	37	7	64377989	64377989	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021148.2	+1	reviewed	p.E45*	0.825	461	0%	330	23.3%	5	40%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF117	51351	genome.wustl.edu	37	7	64437293	64437293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398695	-1	known	p.H382N	0.999	64	0%	62	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64437531	64437531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398695	-1	known	p.E302D	1.000	69	0%	47	23.4%	2	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64438563	64438563	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015852.3	-1	validated	p.T462	0.064	209	0%	192	25%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64439395	64439395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015852.3	-1	validated	p.R185I	0.908	224	0.9%	240	35%	1	0%	benign(0.01)	tolerated(0.2)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64439605	64439605	+	Missense_Mutation	SNP	C	C	T	rs184853658	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015852.3	-1	validated	p.R115H	1.000	153	0%	126	31%	1	100%	possibly_damaging(0.771)	deleterious(0.01)	deleterious(0.692)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000207062	0	genome.wustl.edu	37	7	64530922	64530922	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000384334	+1	novel	NULL	0.999	77	0%	72	29.2%	0	-	-	-	-	-
ZNF92	168374	genome.wustl.edu	37	7	64863857	64863857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152626.2	+1	validated	p.R277I	1.000	357	0.3%	306	31.7%	7	28.5%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GUSB	2990	genome.wustl.edu	37	7	65441101	65441101	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000181.3	-1	reviewed	p.A271	0.519	52	0%	35	25.7%	32	46.8%	-	-	-	HMMPfam_Glyco_hydro_2,superfamily_beta-Galactosidase/glucuronidase domain
RABGEF1	27342	genome.wustl.edu	37	7	66270267	66270267	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014504.2	+1	validated	p.Y321D	1.000	193	0%	183	25.1%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993
SBDS	51119	genome.wustl.edu	37	7	66458235	66458235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016038.2	-1	reviewed	p.S143L	1.000	397	0%	398	34.7%	64	15.6%	benign(0.037)	deleterious(0)	neutral(0.447)	HMMPfam_SBDS_C,superfamily_Hypothetical protein AF0491 middle domain
TYW1	55253	genome.wustl.edu	37	7	66463809	66463809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018264.2	+1	validated	p.K47N	0.004	137	0%	123	23.6%	4	0%	benign(0.147)	tolerated(0.08)	neutral(0.313)	NULL
TYW1	55253	genome.wustl.edu	37	7	66703394	66703394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018264.2	+1	validated	p.A693T	0.977	262	0%	282	27%	8	0%	benign(0.02)	tolerated(0.22)	neutral(0.043)	NULL
WBSCR17	64409	genome.wustl.edu	37	7	70853264	70853264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022479.1	+1	reviewed	p.I156L	1.000	219	0%	150	17.3%	0	-	benign(0.009)	tolerated(0.09)	neutral(0.297)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
WBSCR17	64409	genome.wustl.edu	37	7	70853359	70853359	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022479.1	+1	reviewed	p.I187	1.000	163	0%	115	25.2%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
FZD9	8326	genome.wustl.edu	37	7	72849191	72849191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003508.2	+1	reviewed	p.A285V	0.988	46	0%	28	25%	0	-	benign(0.002)	tolerated(0.24)	neutral(0.037)	HMMPfam_Frizzled
BAZ1B	9031	genome.wustl.edu	37	7	72892073	72892073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032408.3	-1	validated	p.R573I	0.036	583	0%	535	32.3%	8	0%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
BAZ1B	9031	genome.wustl.edu	37	7	72892158	72892158	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032408.3	-1	validated	p.E545*	1.000	467	0%	405	36%	0	-	-	-	-	NULL
BAZ1B	9031	genome.wustl.edu	37	7	72892159	72892159	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032408.3	-1	validated	p.K544N	1.000	465	0%	405	28.4%	0	-	possibly_damaging(0.69)	tolerated(0.35)	neutral(0.268)	NULL
BAZ1B	9031	genome.wustl.edu	37	7	72892834	72892834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032408.3	-1	validated	p.K319N	1.000	164	0%	149	27.5%	7	57.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CLDN4	1364	genome.wustl.edu	37	7	73245549	73245549	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001305.3	+1	reviewed	p.L6	0.448	49	0%	28	25%	329	42.8%	-	-	-	HMMPfam_PMP22_Claudin
WBSCR27	155368	genome.wustl.edu	37	7	73256378	73256378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152559.2	-1	reviewed	p.F31L	0.937	47	0%	54	29.6%	3	0%	benign(0.034)	deleterious(0)	neutral(0.447)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CLIP2	7461	genome.wustl.edu	37	7	73795147	73795147	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000493166	+1	known	p.R47Q	0.006	140	0%	132	33.3%	4	0%	-	-	-	NULL
CLIP2	7461	genome.wustl.edu	37	7	73800892	73800892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003388.4	+1	reviewed	p.A841T	1.000	46	0%	43	30.2%	4	0%	benign(0.003)	tolerated(0.4)	neutral(0.016)	NULL
STAG3L2	442582	genome.wustl.edu	37	7	74299141	74299141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000359898	-1	known	p.D157N	1.000	221	0%	311	10.6%	0	-	benign(0.045)	tolerated(0.08)	neutral(0.302)	NULL
LOC100132585	100132585	genome.wustl.edu	37	7	74329355	74329355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001722111.2	-1	model	p.Q3H	0.137	11	0.000	5	0.800	0	-	-	-	-	NULL
WBSCR16	81554	genome.wustl.edu	37	7	74480412	74480412	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030798.3	-1	reviewed	p.V211	0.340	41	0%	53	43.4%	24	45.8%	-	-	-	superfamily_RCC1/BLIP-II
GTF2IRD2B	389524	genome.wustl.edu	37	7	74564704	74564704	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003795.2	+1	reviewed	p.S817	0.994	404	0%	440	24.1%	4	0%	-	-	-	NULL
CCL24	6369	genome.wustl.edu	37	7	75442995	75442995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002991.2	-1	reviewed	p.F13L	0.001	77	0%	89	30.3%	1	0%	benign(0.001)	tolerated(1)	-	NULL
LOC100288807	100288807	genome.wustl.edu	37	7	76687057	76687057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342739.1	-1	model	p.E169D	0.033	312	0%	330	18.2%	0	-	-	-	-	NULL
LOC100288807	100288807	genome.wustl.edu	37	7	76688682	76688682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342739.1	-1	model	p.S65F	0.028	423	0%	428	21%	0	-	-	-	-	NULL
CCDC146	57639	genome.wustl.edu	37	7	76908093	76908093	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020879.2	+1	validated	p.E489*	0.998	77	0%	91	33%	0	-	-	-	-	NULL
CCDC146	57639	genome.wustl.edu	37	7	76911893	76911893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020879.2	+1	validated	p.R647W	0.998	75	0%	83	18.1%	66	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC146	57639	genome.wustl.edu	37	7	76916764	76916764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020879.2	+1	validated	p.L762P	0.958	260	0%	251	31.9%	109	66%	benign(0.372)	tolerated(0.08)	neutral(0.418)	NULL
CCDC146	57639	genome.wustl.edu	37	7	76922473	76922473	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020879.2	+1	validated	p.R874*	1.000	387	0%	331	31.7%	144	65.9%	-	-	-	NULL
PION	54103	genome.wustl.edu	37	7	76950687	76950687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017439.3	-1	validated	p.W653R	0.927	188	0.5%	142	14.8%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77365776	77365776	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198467.2	+1	validated	p.E212D	0.667	44	0%	38	26.3%	1	0%	benign(0.395)	tolerated(0.08)	neutral(0.427)	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77394819	77394819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198467.2	+1	validated	p.R451I	1.000	256	0%	207	30.9%	8	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77402502	77402502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198467.2	+1	validated	p.R555Q	1.000	210	0%	165	27.9%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77764483	77764483	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012301.3	-1	reviewed	p.P962	1.000	124	0%	84	34.5%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	77789394	77789394	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012301.3	-1	reviewed	p.F931	0.874	60	0%	57	29.8%	2	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	77885785	77885785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012301.3	-1	reviewed	p.R508C	1.000	81	0%	50	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	78119102	78119102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012301.3	-1	reviewed	p.P341S	1.000	333	0%	239	31.4%	0	-	benign(0.403)	tolerated(0.61)	neutral(0.134)	superfamily_WW domain
GNAT3	346562	genome.wustl.edu	37	7	80141219	80141219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102386.1	-1	provisional	p.E8D	1.000	46	0%	35	34.3%	0	-	possibly_damaging(0.786)	tolerated(0.1)	deleterious(0.581)	HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases
CD36	948	genome.wustl.edu	37	7	80290383	80290383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000072.3	+1	reviewed	p.R96C	1.000	167	0%	128	32.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CD36
SEMA3C	10512	genome.wustl.edu	37	7	80394557	80394557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006379.2	-1	validated	p.R453W	1.000	159	0%	110	41.8%	15	46.6%	possibly_damaging(0.94)	deleterious(0.02)	deleterious(0.768)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA3C	10512	genome.wustl.edu	37	7	80439943	80439943	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006379.2	-1	validated	p.T174	0.007	178	0%	157	29.3%	17	52.9%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
HGF	3082	genome.wustl.edu	37	7	81372754	81372754	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000601.4	-1	reviewed	p.C260	1.000	149	0%	137	31.4%	1	0%	-	-	-	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like,PatternScan_KRINGLE_1
HGF	3082	genome.wustl.edu	37	7	81386582	81386582	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000601.4	-1	reviewed	p.S135	1.000	86	0%	72	26.4%	3	0%	-	-	-	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
CACNA2D1	781	genome.wustl.edu	37	7	81589142	81589142	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000722.2	-1	reviewed	p.I990	1.000	54	0%	34	55.9%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82544945	82544945	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000426442	-1	known	p.T397M	1.000	92	0%	96	34.4%	4	0%	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82544949	82544949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033026.5	-1	validated	p.P4118H	1.000	90	0%	97	24.7%	4	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PCLO	27445	genome.wustl.edu	37	7	82578833	82578833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033026.5	-1	validated	p.E3691K	1.000	438	0%	374	29.1%	5	40%	probably_damaging(0.971)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82583284	82583284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033026.5	-1	validated	p.E2329K	0.000	495	0%	441	26.8%	2	100%	probably_damaging(0.971)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82595409	82595409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033026.5	-1	validated	p.K1232T	0.000	552	0.2%	484	25.8%	0	-	possibly_damaging(0.936)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82763793	82763793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033026.5	-1	validated	p.K1025Q	1.000	77	0%	71	22.5%	0	-	probably_damaging(0.978)	-	-	superfamily_FYVE/PHD zinc finger
SEMA3A	10371	genome.wustl.edu	37	7	83764140	83764140	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006080.2	-1	reviewed	p.F80	1.000	167	0%	125	24.8%	7	42.8%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA3D	223117	genome.wustl.edu	37	7	84628881	84628881	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152754.2	-1	validated	p.R737	0.997	150	0%	108	39.8%	1	100%	-	-	-	NULL
SEMA3D	223117	genome.wustl.edu	37	7	84644433	84644433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152754.2	-1	validated	p.D549N	1.000	266	0%	258	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold
GRM3	2913	genome.wustl.edu	37	7	86469047	86469047	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000840.2	+1	reviewed	p.I739	0.971	131	0%	95	36.8%	0	-	-	-	-	HMMPfam_7tm_3
GRM3	2913	genome.wustl.edu	37	7	86469129	86469129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000840.2	+1	reviewed	p.E767K	1.000	143	0%	103	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3
GRM3	2913	genome.wustl.edu	37	7	86479798	86479798	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000840.2	+1	reviewed	p.V835G	1.000	171	0%	108	33.3%	0	-	benign(0.05)	tolerated(0.3)	neutral(0.032)	NULL
KIAA1324L	222223	genome.wustl.edu	37	7	86537857	86537857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142749.2	-1	validated	p.V788F	1.000	192	0%	130	23.8%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	superfamily_Mannose 6-phosphate receptor domain
KIAA1324L	222223	genome.wustl.edu	37	7	86542347	86542347	+	Nonsense_Mutation	SNP	C	C	A	rs34740333		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000423294	-1	known	p.G596*	1.000	77	0%	62	30.6%	1	0%	benign(0.018)	tolerated(0.21)	neutral(0.044)	superfamily_Growth factor receptor domain
ABCB4	5244	genome.wustl.edu	37	7	87035643	87035643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018849.2	-1	reviewed	p.K1156N	1.000	358	0%	321	24%	0	-	possibly_damaging(0.627)	deleterious(0.02)	deleterious(0.602)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB4	5244	genome.wustl.edu	37	7	87037358	87037358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018849.2	-1	reviewed	p.T1092A	0.100	269	0%	171	18.7%	1	0%	benign(0.003)	tolerated(0.53)	neutral(0.007)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB4	5244	genome.wustl.edu	37	7	87079294	87079294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018849.2	-1	reviewed	p.E275*	1.000	176	0%	167	29.9%	1	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87079363	87079363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018849.2	-1	reviewed	p.A252T	1.000	196	0%	168	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87173521	87173521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000927.3	-1	reviewed	p.V712A	1.000	194	0%	155	25.2%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87179871	87179871	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000927.3	-1	reviewed	p.S379	0.052	327	0%	258	14%	1	0%	-	-	-	NULL
DBF4	10926	genome.wustl.edu	37	7	87514318	87514318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006716.3	+1	validated	p.D82Y	1.000	89	0%	93	21.5%	13	53.8%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	NULL
DBF4	10926	genome.wustl.edu	37	7	87537426	87537426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006716.3	+1	validated	p.L658P	0.016	146	0%	135	33.3%	23	39.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAM22	53616	genome.wustl.edu	37	7	87607711	87607711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021723.2	+1	reviewed	p.D103N	0.993	148	0%	136	39.7%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Pep_M12B_propep
ADAM22	53616	genome.wustl.edu	37	7	87754969	87754969	+	Missense_Mutation	SNP	C	C	T	rs186904476	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021723.2	+1	reviewed	p.R225W	1.000	94	0%	53	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STEAP4	79689	genome.wustl.edu	37	7	87910282	87910282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024636.2	-1	validated	p.S366Y	1.000	188	0.5%	137	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ferric_reduct
STEAP4	79689	genome.wustl.edu	37	7	87912213	87912213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024636.2	-1	validated	p.P243S	0.977	168	0%	130	27.7%	0	-	possibly_damaging(0.46)	deleterious(0.03)	deleterious(0.515)	NULL
C7orf62	219557	genome.wustl.edu	37	7	88423551	88423551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152706.2	-1	predicted	p.P236S	0.771	193	0%	153	32.7%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
C7orf62	219557	genome.wustl.edu	37	7	88423593	88423593	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152706.2	-1	predicted	p.E222*	0.764	216	0%	173	38.2%	0	-	-	-	-	NULL
C7orf62	219557	genome.wustl.edu	37	7	88423915	88423915	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152706.2	-1	predicted	p.Y114*	0.007	189	0%	200	25.5%	0	-	-	-	-	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88962899	88962899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181646.2	+1	provisional	p.N201K	0.979	261	0%	184	26.6%	0	-	benign(0.253)	tolerated(0.22)	neutral(0.068)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88963246	88963246	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181646.2	+1	provisional	p.S317*	0.000	140	0%	109	22%	0	-	-	-	-	NULL
STEAP1	26872	genome.wustl.edu	37	7	89793829	89793829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012449.2	+1	reviewed	p.I267M	0.712	290	0.3%	210	23.8%	24	25%	benign(0.057)	tolerated(0.18)	neutral(0.060)	NULL
GTPBP10	85865	genome.wustl.edu	37	7	90014301	90014301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033107.2	+1	validated	p.E333K	0.998	225	0%	187	36.9%	10	20%	possibly_damaging(0.626)	tolerated(0.41)	neutral(0.233)	superfamily_P-loop containing nucleoside triphosphate hydrolases
AKAP9	10142	genome.wustl.edu	37	7	91630473	91630473	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005751.4	+1	reviewed	p.F414	1.000	250	0%	278	30.2%	1	100%	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91632296	91632296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005751.4	+1	reviewed	p.G1022V	0.005	214	0%	205	27.8%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91726928	91726928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005751.4	+1	reviewed	p.R3476K	0.993	239	0%	236	27.5%	6	66.6%	probably_damaging(0.997)	tolerated(0.27)	deleterious(0.500)	NULL
KRIT1	889	genome.wustl.edu	37	7	91870395	91870395	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004912.3	-1	reviewed	p.L58	1.000	97	0%	69	23.2%	3	66.6%	-	-	-	NULL
ERVW-1	30816	genome.wustl.edu	37	7	92098730	92098730	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014590.3	-1	reviewed	p.P322	0.171	213	0%	218	34.9%	0	-	-	-	-	HMMPfam_TLV_coat
RBM48	84060	genome.wustl.edu	37	7	92164257	92164257	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032120.2	+1	validated	p.A330	0.002	79	0%	83	9.6%	9	11.1%	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92731023	92731023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017654.2	-1	validated	p.S1463Y	0.972	337	0%	273	31.5%	4	0%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92731256	92731256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017654.2	-1	validated	p.K1385N	0.996	377	0%	311	29.6%	3	0%	probably_damaging(0.98)	tolerated(0.51)	neutral(0.433)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92732765	92732765	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017654.2	-1	validated	p.F882L	1.000	146	0%	142	23.2%	0	-	possibly_damaging(0.792)	tolerated(0.07)	deleterious(0.616)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92733650	92733650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017654.2	-1	validated	p.K587N	1.000	203	0%	170	31.8%	0	-	possibly_damaging(0.931)	deleterious(0.03)	deleterious(0.742)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92733902	92733902	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017654.2	-1	validated	p.E503D	0.953	276	0%	185	28.6%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92734557	92734557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017654.2	-1	validated	p.R285Q	0.950	145	0%	121	38%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92762528	92762528	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152703.2	-1	validated	p.A919	0.008	322	0%	256	25.8%	0	-	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763329	92763329	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152703.2	-1	validated	p.V652	0.001	486	0.2%	292	32.9%	1	0%	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92764803	92764803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152703.2	-1	validated	p.L161S	0.000	618	0.2%	416	30.8%	0	-	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92902039	92902039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017667.2	+1	validated	p.K265N	1.000	62	0%	63	33.3%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF2450
CCDC132	55610	genome.wustl.edu	37	7	92983000	92983000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017667.2	+1	validated	p.R838C	1.000	310	0%	215	60%	12	75%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_DUF2451
CCDC132	55610	genome.wustl.edu	37	7	92985359	92985359	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000443443	+1	known	p.E139K	1.000	131	0%	84	29.8%	26	26.9%	-	-	-	HMMPfam_DUF2451
CALCR	799	genome.wustl.edu	37	7	93055784	93055784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001742.3	-1	reviewed	p.D437N	0.000	89	0%	63	19%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
CALCR	799	genome.wustl.edu	37	7	93063565	93063565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001742.3	-1	reviewed	p.E397D	1.000	151	0%	148	12.8%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF81321
CALCR	799	genome.wustl.edu	37	7	93108744	93108744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001742.3	-1	reviewed	p.V43I	0.000	277	0%	252	28.6%	0	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	superfamily_SSF111418
COL1A2	1278	genome.wustl.edu	37	7	94057720	94057720	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000089.3	+1	reviewed	p.K1214	1.000	169	0%	104	27.9%	2165	0%	-	-	-	HMMPfam_COLFI,HMMSmart_SM00038
COL1A2	1278	genome.wustl.edu	37	7	94059571	94059571	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000089.3	+1	reviewed	p.E1323*	1.000	165	0%	158	27.8%	1818	0%	-	-	-	HMMPfam_COLFI,HMMSmart_SM00038
CASD1	64921	genome.wustl.edu	37	7	94178867	94178867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022900.4	+1	validated	p.S579Y	1.000	174	0%	141	29.8%	5	20%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Cas1p
SGCE	8910	genome.wustl.edu	37	7	94228154	94228154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099401.1	-1	reviewed	p.E396K	1.000	159	0%	111	31.5%	32	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Sarcoglycan_2
PEG10	23089	genome.wustl.edu	37	7	94293537	94293537	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040152.1	+1	reviewed	p.V223	0.000	99	0%	106	30.2%	28	100%	-	-	-	NULL
PON2	5445	genome.wustl.edu	37	7	95041011	95041011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000305.2	-1	reviewed	p.N150H	1.000	150	0%	123	27.6%	36	55.5%	benign(0.054)	tolerated(0.2)	neutral(0.053)	superfamily_SSF63829
ASB4	51666	genome.wustl.edu	37	7	95157367	95157367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016116.1	+1	reviewed	p.E244K	1.000	67	0%	74	33.8%	0	-	benign(0.156)	tolerated(0.11)	neutral(0.286)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PDK4	5166	genome.wustl.edu	37	7	95216407	95216407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002612.3	-1	reviewed	p.S337Y	1.000	40	0%	30	23.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
PDK4	5166	genome.wustl.edu	37	7	95224471	95224471	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002612.3	-1	reviewed	p.E46*	0.240	96	0%	82	31.7%	2	0%	-	-	-	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
SLC25A13	10165	genome.wustl.edu	37	7	95820501	95820501	+	Missense_Mutation	SNP	G	G	A	rs80338719	byCluster	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014251.2	-1	reviewed	p.S225L	1.000	294	0%	230	69.6%	25	96%	benign(0.123)	deleterious(0)	neutral(0.455)	superfamily_SSF47473
OCM2	4951	genome.wustl.edu	37	7	97616388	97616388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006188.3	-1	reviewed	p.N92T	0.947	219	0%	264	16.3%	0	-	benign(0.005)	tolerated(0.18)	neutral(0.056)	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
LMTK2	22853	genome.wustl.edu	37	7	97822461	97822461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014916.3	+1	reviewed	p.R895Q	0.000	118	0%	92	30.4%	2	0%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
LMTK2	22853	genome.wustl.edu	37	7	97823079	97823079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014916.3	+1	reviewed	p.R1101Q	1.000	61	0%	59	30.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAIAP2L1	55971	genome.wustl.edu	37	7	97935801	97935801	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018842.4	-1	reviewed	p.T397	0.213	132	0%	120	10.8%	81	18.5%	-	-	-	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2
BAIAP2L1	55971	genome.wustl.edu	37	7	97946560	97946560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018842.4	-1	reviewed	p.A153T	0.995	408	0%	390	23.6%	35	51.4%	benign(0.074)	tolerated(0.07)	neutral(0.324)	HMMPfam_IMD
TRRAP	8295	genome.wustl.edu	37	7	98608830	98608830	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000456197	+1	known	p.S3413L	0.995	191	0%	132	31.8%	27	40.7%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
SMURF1	57154	genome.wustl.edu	37	7	98648572	98648572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020429.1	-1	reviewed	p.E284K	0.981	8	0.000	9	0.556	1	100%	unknown(0)	tolerated(0.7)	-	NULL
ZNF789	285989	genome.wustl.edu	37	7	99084411	99084411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213603.2	+1	validated	p.R193Q	0.000	293	0%	297	33.7%	0	-	possibly_damaging(0.817)	tolerated(0.05)	deleterious(0.654)	NULL
ZKSCAN5	23660	genome.wustl.edu	37	7	99103753	99103753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014569.3	+1	reviewed	p.K29T	0.999	228	0%	238	31.1%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CYP3A7	1551	genome.wustl.edu	37	7	99293455	99293455	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000292414	-1	known	p.E504	0.007	69	0%	57	28.1%	0	-	-	-	-	NULL
CYP3A7	1551	genome.wustl.edu	37	7	99314848	99314848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000765.3	-1	reviewed	p.R158I	0.325	436	0%	293	28.3%	0	-	possibly_damaging(0.821)	deleterious(0.03)	deleterious(0.675)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP3A4	1576	genome.wustl.edu	37	7	99359871	99359871	+	Missense_Mutation	SNP	G	G	A	rs10250778	byCluster;byFrequency	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017460.3	-1	reviewed	p.T349I	0.010	111	0%	118	41.5%	0	-	benign(0.002)	deleterious(0.05)	neutral(0.345)	HMMPfam_p450,superfamily_Cytochrome P450
CYP3A4	1576	genome.wustl.edu	37	7	99366012	99366012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017460.3	-1	reviewed	p.R212I	0.001	351	0%	280	28.2%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_p450,superfamily_Cytochrome P450
GJC3	349149	genome.wustl.edu	37	7	99526508	99526508	+	Missense_Mutation	SNP	C	C	T	rs191464858	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181538.2	-1	reviewed	p.D246N	0.001	250	0%	243	12.8%	1	0%	benign(0.004)	tolerated(0.25)	neutral(0.037)	NULL
STAG3	10734	genome.wustl.edu	37	7	99798103	99798103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012447.2	+1	validated	p.P600S	0.951	137	0%	116	37.1%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	superfamily_ARM repeat
PILRA	29992	genome.wustl.edu	37	7	99996916	99996916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013439.2	+1	reviewed	p.E237G	0.170	226	0%	184	34.2%	18	0%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
LRCH4	4034	genome.wustl.edu	37	7	100174734	100174734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002319.3	-1	reviewed	p.A447T	0.000	35	0%	36	33.3%	25	32%	probably_damaging(0.979)	tolerated(0.84)	neutral(0.422)	NULL
TFR2	7036	genome.wustl.edu	37	7	100226938	100226938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003227.3	-1	reviewed	p.S443F	0.998	181	0%	193	30.1%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
GNB2	2783	genome.wustl.edu	37	7	100275829	100275829	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005273.3	+1	reviewed	p.G202	0.525	67	1.5%	31	38.7%	558	41.2%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ZAN	7455	genome.wustl.edu	37	7	100371047	100371047	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003386.1	+1	reviewed	p.I1855	0.979	37	0%	48	29.2%	0	-	-	-	-	superfamily_Serine proterase inhibitors,HMMPfam_TIL
SLC12A9	56996	genome.wustl.edu	37	7	100459099	100459099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020246.2	+1	validated	p.A477T	0.981	126	0%	162	16%	28	17.8%	benign(0.033)	tolerated(0.1)	neutral(0.288)	HMMPfam_AA_permease
SRRT	51593	genome.wustl.edu	37	7	100479845	100479845	+	Silent	SNP	G	G	A	rs144725595	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000423692	+1	known	p.A72T	0.991	108	0%	113	34.5%	41	41.4%	-	-	-	NULL
SRRT	51593	genome.wustl.edu	37	7	100483967	100483967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015908.5	+1	validated	p.D520N	1.000	62	0%	74	23%	85	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MUC3A	4584	genome.wustl.edu	37	7	100550038	100550038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001725354.2	+1	model	p.S207P	0.000	215	0%	202	19.3%	0	-	possibly_damaging(0.811)	tolerated(0.05)	deleterious(0.651)	NULL
MUC3A	4584	genome.wustl.edu	37	7	100552467	100552467	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001725354.2	+1	model	p.G1016	0.002	216	0%	271	16.2%	0	-	-	-	-	NULL
MUC3A	4584	genome.wustl.edu	37	7	100552578	100552578	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001725354.2	+1	model	p.P1053	0.001	210	0%	309	23.3%	0	-	-	-	-	NULL
MUC3A	4584	genome.wustl.edu	37	7	100606746	100606746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000319509	+1	known	p.K612N	0.110	24	0%	13	53.8%	0	-	probably_damaging(0.96)	tolerated(0.4)	neutral(0.419)	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
MUC17	140453	genome.wustl.edu	37	7	100677107	100677107	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040105.1	+1	provisional	p.G804*	0.000	797	0%	509	14.9%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100680060	100680060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040105.1	+1	provisional	p.S1788L	0.165	433	0.2%	322	31.7%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100682396	100682396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040105.1	+1	provisional	p.S2567A	0.048	344	0%	282	31.9%	0	-	benign(0.356)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100683040	100683040	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040105.1	+1	provisional	p.P2781	0.001	382	0%	373	24.4%	1	0%	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100683243	100683243	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040105.1	+1	provisional	p.S2849*	0.000	374	0%	345	29.3%	1	0%	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100685971	100685971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040105.1	+1	provisional	p.I3758M	0.001	157	0%	153	34.6%	0	-	possibly_damaging(0.609)	-	-	NULL
SERPINE1	5054	genome.wustl.edu	37	7	100771788	100771788	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000602.3	+1	reviewed	p.F38	0.922	134	0%	107	32.7%	16	12.5%	-	-	-	HMMPfam_Serpin,superfamily_Prot_inh_serpin
CUX1	1523	genome.wustl.edu	37	7	101758501	101758501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181552.2	+1	reviewed	p.R208*	1.000	110	0%	126	32.5%	29	3.4%	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101837150	101837150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181552.2	+1	reviewed	p.S369P	0.020	25	0%	34	38.2%	22	45.4%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
CUX1	1523	genome.wustl.edu	37	7	101845022	101845022	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181552.2	+1	reviewed	p.G815	1.000	35	0%	34	29.4%	1	100%	-	-	-	NULL
NAPEPLD	222236	genome.wustl.edu	37	7	102760026	102760026	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000420631	-1	known	p.R63Q	0.997	176	0%	151	35.8%	3	0%	-	-	-	superfamily_Metallo-hydrolase/oxidoreductase
NAPEPLD	222236	genome.wustl.edu	37	7	102760658	102760658	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122838.1	-1	validated	p.E103*	1.000	210	0%	162	30.9%	2	0%	-	-	-	NULL
SLC26A5	375611	genome.wustl.edu	37	7	103050936	103050936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198999.2	-1	reviewed	p.R211C	1.000	151	0%	120	31.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Sulfate_transp
RELN	5649	genome.wustl.edu	37	7	103183178	103183178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005045.3	-1	reviewed	p.R2224I	1.000	152	0%	172	36%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
RELN	5649	genome.wustl.edu	37	7	103194142	103194142	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005045.3	-1	reviewed	p.I1978	1.000	99	0%	97	28.9%	0	-	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103198469	103198469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005045.3	-1	reviewed	p.D1853Y	1.000	52	0%	59	28.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RELN	5649	genome.wustl.edu	37	7	103202074	103202074	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005045.3	-1	reviewed	p.L1812V	1.000	239	0%	196	30.1%	0	-	probably_damaging(0.994)	tolerated(1)	neutral(0.452)	NULL
RELN	5649	genome.wustl.edu	37	7	103212661	103212661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005045.3	-1	reviewed	p.T1520A	0.914	106	0%	61	29.5%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
RELN	5649	genome.wustl.edu	37	7	103214697	103214697	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005045.3	-1	reviewed	p.F1451	0.998	180	0%	152	40.1%	0	-	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103234327	103234327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005045.3	-1	reviewed	p.N1238K	1.000	128	0%	97	36.1%	0	-	probably_damaging(0.955)	tolerated(0.13)	deleterious(0.651)	NULL
ORC5	5001	genome.wustl.edu	37	7	103828706	103828706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002553.2	-1	reviewed	p.R226K	1.000	94	0%	88	14.8%	17	29.4%	possibly_damaging(0.608)	tolerated(0.13)	neutral(0.463)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LHFPL3	375612	genome.wustl.edu	37	7	104377275	104377275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199000.2	+1	reviewed	p.A200V	1.000	63	0%	57	33.3%	0	-	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	HMMPfam_L_HGMIC_fpl
SRPK2	6733	genome.wustl.edu	37	7	104801052	104801052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182692.1	-1	validated	p.M175V	1.000	110	0%	113	32.7%	24	37.5%	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	superfamily_Kinase_like,HMMPfam_Pkinase
RINT1	60561	genome.wustl.edu	37	7	105195486	105195486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021930.4	+1	validated	p.N495H	1.000	181	0%	154	23.4%	16	50%	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_RINT1_TIP1
CDHR3	222256	genome.wustl.edu	37	7	105664850	105664850	+	Missense_Mutation	SNP	G	G	A	rs141787240	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000343407	+1	known	p.E201K	0.995	61	0%	90	40%	0	-	possibly_damaging(0.553)	tolerated(0.22)	neutral(0.231)	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106509371	106509371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002649.2	+1	reviewed	p.K455N	0.042	137	0%	102	28.4%	0	-	possibly_damaging(0.52)	tolerated(0.13)	neutral(0.427)	HMMPfam_PI3K_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PIK3CG	5294	genome.wustl.edu	37	7	106509661	106509661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002649.2	+1	reviewed	p.R552H	0.999	135	0%	107	35.5%	0	-	possibly_damaging(0.952)	tolerated(0.07)	deleterious(0.715)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
PIK3CG	5294	genome.wustl.edu	37	7	106509966	106509966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002649.2	+1	reviewed	p.D654N	1.000	62	0%	70	31.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
GPR22	2845	genome.wustl.edu	37	7	107115210	107115210	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005295.2	+1	reviewed	p.L235	0.954	107	0%	92	29.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC26A4	5172	genome.wustl.edu	37	7	107315540	107315540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000441.1	+1	reviewed	p.L251I	1.000	335	0%	222	35.1%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	HMMPfam_Sulfate_transp
SLC26A4	5172	genome.wustl.edu	37	7	107329498	107329498	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000441.1	+1	reviewed	p.G334	1.000	253	0%	278	25.2%	0	-	-	-	-	HMMPfam_Sulfate_transp
CBLL1	79872	genome.wustl.edu	37	7	107399643	107399643	+	RNA	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_024199.1	+1	validated	NULL	0.994	136	0%	138	37.7%	17	35.2%	-	-	-	-
SLC26A3	1811	genome.wustl.edu	37	7	107423293	107423293	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000111.2	-1	reviewed	p.I420	0.005	278	0%	193	33.2%	0	-	-	-	-	HMMPfam_Sulfate_transp
SLC26A3	1811	genome.wustl.edu	37	7	107423486	107423486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000111.2	-1	reviewed	p.F391C	1.000	367	0.3%	246	30.1%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sulfate_transp
LAMB1	3912	genome.wustl.edu	37	7	107572753	107572753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002291.2	-1	reviewed	p.E1420K	0.899	205	0%	229	33.2%	75	20%	benign(0.148)	tolerated(0.24)	neutral(0.050)	NULL
NRCAM	4897	genome.wustl.edu	37	7	107816948	107816948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037132.1	-1	reviewed	p.F1026L	1.000	172	0%	183	28.4%	35	54.2%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NRCAM	4897	genome.wustl.edu	37	7	107866733	107866733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037132.1	-1	reviewed	p.E214K	0.955	328	0%	310	32.9%	17	52.9%	benign(0.065)	tolerated(0.76)	neutral(0.005)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
THAP5	168451	genome.wustl.edu	37	7	108204963	108204963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130475.1	-1	validated	p.S287Y	0.846	178	0%	168	26.8%	10	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LRRN3	54674	genome.wustl.edu	37	7	110763330	110763330	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099658.1	+1	validated	p.R168*	1.000	206	0%	191	30.9%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
LRRN3	54674	genome.wustl.edu	37	7	110764050	110764050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099658.1	+1	validated	p.R408W	1.000	202	0%	169	27.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
LRRN3	54674	genome.wustl.edu	37	7	110764601	110764601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099658.1	+1	validated	p.I591M	0.999	130	0%	112	30.4%	5	0%	possibly_damaging(0.86)	deleterious(0.01)	deleterious(0.738)	HMMPfam_fn3,superfamily_Fibronectin type III
DOCK4	9732	genome.wustl.edu	37	7	111382129	111382129	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000445943	-1	known	p.D1603G	1.000	139	0%	99	26.3%	3	0%	-	-	-	NULL
DOCK4	9732	genome.wustl.edu	37	7	111409685	111409685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014705.3	-1	reviewed	p.D1234G	0.999	58	0%	69	29%	0	-	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111512134	111512134	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014705.3	-1	reviewed	p.N647H	1.000	13	0%	11	63.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111512549	111512549	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014705.3	-1	reviewed	p.E606*	1.000	37	0%	18	44.4%	0	-	-	-	-	NULL
IFRD1	3475	genome.wustl.edu	37	7	112096972	112096972	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007245.1	+1	validated	p.A96	0.360	139	0%	112	25.9%	24	41.6%	-	-	-	HMMPfam_IFRD,superfamily_ARM repeat
C7orf60	154743	genome.wustl.edu	37	7	112461939	112461939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152556.2	-1	validated	p.R360*	1.000	110	0%	95	24.2%	4	25%	-	-	-	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113519230	113519230	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002711.3	-1	reviewed	p.G639	0.000	385	0.3%	344	32%	0	-	-	-	-	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113519633	113519633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002711.3	-1	reviewed	p.S505Y	0.000	234	0%	200	27.5%	0	-	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113558817	113558817	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002711.3	-1	reviewed	p.E79*	1.000	183	0%	173	31.8%	0	-	-	-	-	NULL
FOXP2	93986	genome.wustl.edu	37	7	114066663	114066663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_148898.2	+1	reviewed	p.D33N	1.000	139	0%	83	28.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TFEC	22797	genome.wustl.edu	37	7	115596742	115596742	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012252.2	-1	validated	p.E125*	1.000	64	0%	59	27.1%	2	0%	-	-	-	NULL
TES	26136	genome.wustl.edu	37	7	115890540	115890540	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000393484	+1	known	p.E18*	0.029	55	0%	54	24.1%	79	31.6%	benign(0.003)	tolerated(0.09)	neutral(0.296)	NULL
MET	4233	genome.wustl.edu	37	7	116339804	116339804	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127500.1	+1	reviewed	p.T222	0.000	323	0%	341	26.1%	2	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
MET	4233	genome.wustl.edu	37	7	116339908	116339908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127500.1	+1	reviewed	p.N257T	0.976	368	0%	355	28.7%	2	100%	benign(0.003)	tolerated(0.28)	neutral(0.032)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
WNT2	7472	genome.wustl.edu	37	7	116960623	116960623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003391.2	-1	reviewed	p.R103Q	1.000	26	0%	17	23.5%	24	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_wnt,HMMSmart_SM00097
ASZ1	136991	genome.wustl.edu	37	7	117003622	117003622	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_023315.1	-1	validated	NULL	0.000	112	0%	74	33.8%	0	-	-	-	-	-
ASZ1	136991	genome.wustl.edu	37	7	117008762	117008762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130768.2	-1	validated	p.E355	1.000	184	0%	128	29.7%	0	-	-	-	-	NULL
CFTR	1080	genome.wustl.edu	37	7	117227829	117227829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000492.3	+1	reviewed	p.L541I	1.000	121	0%	127	32.3%	0	-	benign(0.067)	tolerated(0.49)	neutral(0.015)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD7	56311	genome.wustl.edu	37	7	117864949	117864949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019644.3	+1	validated	p.R22Q	0.000	273	0%	252	26.2%	0	-	probably_damaging(0.969)	tolerated(0.08)	deleterious(0.712)	superfamily_Ankyrin repeat
KCND2	3751	genome.wustl.edu	37	7	119914938	119914938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012281.2	+1	reviewed	p.F84L	0.989	152	0%	89	25.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCND2	3751	genome.wustl.edu	37	7	119915022	119915022	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012281.2	+1	reviewed	p.I112	1.000	166	0%	95	11.6%	1	0%	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCND2	3751	genome.wustl.edu	37	7	119915073	119915073	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012281.2	+1	reviewed	p.I129	0.932	115	0%	73	27.4%	0	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCND2	3751	genome.wustl.edu	37	7	119915259	119915259	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012281.2	+1	reviewed	p.T191	0.001	55	0%	39	28.2%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
C7orf58	79974	genome.wustl.edu	37	7	120770294	120770294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024913.4	+1	validated	p.V508A	0.934	121	0%	106	38.7%	3	0%	benign(0.006)	tolerated(0.34)	neutral(0.023)	NULL
WNT16	51384	genome.wustl.edu	37	7	120979054	120979054	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_057168.1	+1	reviewed	p.D251	0.958	104	0%	92	22.8%	0	-	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
PTPRZ1	5803	genome.wustl.edu	37	7	121637943	121637943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002851.2	+1	reviewed	p.L375I	1.000	73	0%	47	21.3%	0	-	benign(0.061)	tolerated(1)	neutral(0.004)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRZ1	5803	genome.wustl.edu	37	7	121638024	121638024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002851.2	+1	reviewed	p.D402N	1.000	71	0%	59	33.9%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	superfamily_Fibronectin type III
PTPRZ1	5803	genome.wustl.edu	37	7	121650542	121650542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002851.2	+1	reviewed	p.R481L	0.997	399	0.3%	321	11.8%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121651032	121651032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002851.2	+1	reviewed	p.K644N	0.068	170	0%	155	28.4%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652021	121652021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002851.2	+1	reviewed	p.S974Y	1.000	252	0%	169	27.2%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652333	121652333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002851.2	+1	reviewed	p.V1078A	0.759	188	0%	161	30.4%	0	-	benign(0.391)	deleterious(0)	deleterious(0.570)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121676681	121676681	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002851.2	+1	reviewed	p.Q1771P	1.000	115	0%	89	32.6%	0	-	benign(0.024)	tolerated(0.73)	neutral(0.003)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRZ1	5803	genome.wustl.edu	37	7	121691958	121691958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002851.2	+1	reviewed	p.E2073K	0.998	67	0%	49	24.5%	0	-	probably_damaging(0.996)	tolerated(0.31)	deleterious(0.489)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
AASS	10157	genome.wustl.edu	37	7	121716600	121716600	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005763.3	-1	reviewed	p.L908	1.000	145	0%	106	28.3%	0	-	-	-	-	HMMPfam_Saccharop_dh
AASS	10157	genome.wustl.edu	37	7	121766508	121766508	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005763.3	-1	reviewed	p.I131	0.993	492	0%	408	34.1%	0	-	-	-	-	HMMPfam_AlaDh_PNT_N,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
FEZF1	389549	genome.wustl.edu	37	7	121943288	121943288	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024613.2	-1	validated	p.C289	1.000	100	1%	70	28.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FEZF1	389549	genome.wustl.edu	37	7	121943769	121943769	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024613.2	-1	validated	p.I241	0.947	105	0%	64	28.1%	0	-	-	-	-	NULL
TAS2R16	50833	genome.wustl.edu	37	7	122634889	122634889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016945.2	-1	reviewed	p.A267V	0.015	313	0%	299	33.1%	0	-	possibly_damaging(0.804)	tolerated(0.09)	deleterious(0.599)	HMMPfam_TAS2R
IQUB	154865	genome.wustl.edu	37	7	123152119	123152119	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178827.4	-1	validated	p.P92	0.000	275	0%	265	31.7%	0	-	-	-	-	NULL
ASB15	142685	genome.wustl.edu	37	7	123276904	123276904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080928.3	+1	validated	p.R546*	1.000	247	0%	209	34.4%	0	-	-	-	-	HMMPfam_SOCS_box,HMMSmart_SM00253
WASL	8976	genome.wustl.edu	37	7	123335901	123335901	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003941.2	-1	reviewed	p.G216	0.953	89	0%	49	30.6%	10	40%	-	-	-	HMMPfam_PBD,HMMSmart_PBD,superfamily_WASP_C
WASL	8976	genome.wustl.edu	37	7	123344702	123344702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003941.2	-1	reviewed	p.R149Q	1.000	72	0%	38	21.1%	13	38.4%	benign(0.129)	tolerated(0.25)	neutral(0.048)	NULL
HYAL4	23553	genome.wustl.edu	37	7	123508853	123508853	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012269.2	+1	reviewed	p.K176Q	0.000	176	0%	150	34%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
HYAL4	23553	genome.wustl.edu	37	7	123509141	123509141	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012269.2	+1	reviewed	p.E272*	0.003	152	0%	129	31%	0	-	-	-	-	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
SPAM1	6677	genome.wustl.edu	37	7	123593822	123593822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003117.4	+1	reviewed	p.E66D	0.000	135	0%	124	22.6%	0	-	benign(0.008)	tolerated(0.53)	neutral(0.007)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
SPAM1	6677	genome.wustl.edu	37	7	123594321	123594321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003117.4	+1	reviewed	p.G233S	0.000	256	0%	255	29.8%	0	-	benign(0.007)	tolerated(0.68)	neutral(0.002)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
SPAM1	6677	genome.wustl.edu	37	7	123599537	123599537	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003117.4	+1	reviewed	e3-1	0.999	155	0%	151	31.8%	0	-	-	-	-	-
GRM8	2918	genome.wustl.edu	37	7	126086178	126086178	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000845.2	-1	reviewed	e9+2	1.000	333	0%	305	28.2%	0	-	-	-	-	-
GRM8	2918	genome.wustl.edu	37	7	126746631	126746631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000845.2	-1	reviewed	p.N216D	1.000	137	0%	109	30.3%	0	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM8	2918	genome.wustl.edu	37	7	126882826	126882826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000845.2	-1	reviewed	p.D145N	1.000	129	0%	102	25.5%	0	-	benign(0.121)	tolerated(0.31)	neutral(0.036)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ZNF800	168850	genome.wustl.edu	37	7	127014946	127014946	+	Silent	SNP	C	C	T	rs185441151	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000265827	-1	known	p.S148	1.000	277	0%	204	25.5%	2	50%	-	-	-	NULL
GCC1	79571	genome.wustl.edu	37	7	127222675	127222675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024523.5	-1	reviewed	p.F574S	1.000	68	0%	45	26.7%	9	33.3%	possibly_damaging(0.512)	tolerated(0.14)	neutral(0.421)	NULL
ARF5	381	genome.wustl.edu	37	7	127230165	127230165	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001662.2	+1	reviewed	p.E102*	1.000	76	0%	59	10.2%	544	0%	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PAX4	5078	genome.wustl.edu	37	7	127254987	127254987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006193.2	-1	reviewed	p.I95V	1.000	100	0%	96	31.2%	0	-	benign(0.027)	deleterious(0.02)	neutral(0.385)	HMMPfam_PAX,HMMSmart_PAX,superfamily_Homeodomain_like
LRRC4	64101	genome.wustl.edu	37	7	127669998	127669998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022143.4	-1	validated	p.E232D	1.000	38	0%	36	30.6%	3	66.6%	benign(0.362)	deleterious(0.02)	deleterious(0.498)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LEP	3952	genome.wustl.edu	37	7	127892098	127892098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000230.2	+1	reviewed	p.F9L	0.975	272	0%	278	33.5%	0	-	benign(0.04)	tolerated(0.4)	neutral(0.018)	NULL
METTL2B	55798	genome.wustl.edu	37	7	128119315	128119315	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018396.2	+1	reviewed	p.E102	0.977	171	0%	182	31.9%	17	58.8%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
OPN1SW	611	genome.wustl.edu	37	7	128414652	128414652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001708.2	-1	reviewed	p.R196H	0.986	85	0%	121	29.8%	0	-	benign(0.004)	tolerated(0.27)	neutral(0.034)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC136	64753	genome.wustl.edu	37	7	128455900	128455900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022742.3	+1	validated	p.D1093G	0.008	167	0%	192	35.9%	0	-	benign(0.076)	deleterious(0.02)	neutral(0.389)	NULL
TNPO3	23534	genome.wustl.edu	37	7	128619052	128619052	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012470.2	-1	validated	p.Q682	1.000	289	0%	274	32.5%	36	30.5%	-	-	-	superfamily_ARM repeat
AHCYL2	23382	genome.wustl.edu	37	7	129019560	129019560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015328.2	+1	validated	p.S149P	1.000	130	0%	121	28.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM40B	57464	genome.wustl.edu	37	7	129091523	129091523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020704.2	+1	validated	p.R115Q	0.995	49	0%	68	30.9%	0	-	possibly_damaging(0.673)	tolerated(0.94)	neutral(0.239)	HMMPfam_N1221
KLHDC10	23008	genome.wustl.edu	37	7	129769339	129769339	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014997.2	+1	validated	p.L348	1.000	255	0%	174	28.7%	18	88.8%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
TMEM209	84928	genome.wustl.edu	37	7	129832634	129832634	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032842.3	-1	validated	p.S201	0.975	95	0%	88	26.1%	17	29.4%	-	-	-	HMMPfam_CytochromB561_N
CPA4	51200	genome.wustl.edu	37	7	129950688	129950688	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016352.3	+1	reviewed	p.E285	0.981	123	0%	124	26.6%	1	0%	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
COPG2	26958	genome.wustl.edu	37	7	130295860	130295860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000445977	-1	known	p.R234Q	1.000	220	0%	183	26.8%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
MKLN1	4289	genome.wustl.edu	37	7	131128396	131128396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013255.4	+1	validated	p.D444N	1.000	224	0%	190	13.2%	17	17.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Galactose oxidase central domain
MKLN1	4289	genome.wustl.edu	37	7	131172430	131172430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013255.4	+1	validated	p.F717L	1.000	135	0.7%	124	32.3%	27	59.2%	possibly_damaging(0.748)	deleterious(0.01)	deleterious(0.680)	NULL
PODXL	5420	genome.wustl.edu	37	7	131194159	131194159	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001018111.2	-1	reviewed	p.T330P	0.000	43	0%	42	31%	18	38.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
LOC647030	647030	genome.wustl.edu	37	7	131346984	131346984	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_017470.3	-1	model	NULL	0.999	763	0%	666	30.9%	114	0%	-	-	-	-
PLXNA4	91584	genome.wustl.edu	37	7	131825506	131825506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020911.1	-1	validated	p.N1764H	1.000	251	0%	211	30.8%	1	0%	benign(0.394)	deleterious(0.01)	deleterious(0.532)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA4	91584	genome.wustl.edu	37	7	131865362	131865362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020911.1	-1	validated	p.G1208S	1.000	74	0%	83	19.3%	0	-	benign(0.047)	tolerated(0.1)	neutral(0.289)	HMMSmart_SM00429,superfamily_E set domains
PLXNA4	91584	genome.wustl.edu	37	7	132192613	132192613	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020911.1	-1	validated	p.L280	0.057	67	0%	64	26.6%	0	-	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
EXOC4	60412	genome.wustl.edu	37	7	132959852	132959852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021807.3	+1	reviewed	p.E68*	1.000	284	0%	225	21.8%	5	0%	-	-	-	HMMPfam_Sec8_exocyst
CALD1	800	genome.wustl.edu	37	7	134613553	134613553	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033138.3	+1	reviewed	p.E40	1.000	40	0%	40	27.5%	36	0%	-	-	-	HMMPfam_Caldesmon
FAM180A	389558	genome.wustl.edu	37	7	135418799	135418799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205855.3	-1	validated	p.A149V	1.000	40	0%	35	40%	0	-	probably_damaging(0.953)	tolerated(0.12)	deleterious(0.657)	NULL
CHRM2	1129	genome.wustl.edu	37	7	136700449	136700449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000739.2	+1	reviewed	p.E279D	1.000	225	0%	175	33.7%	0	-	benign(0.012)	tolerated(0.37)	neutral(0.019)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DGKI	9162	genome.wustl.edu	37	7	137255980	137255980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004717.2	-1	reviewed	p.E630K	1.000	97	0%	70	28.6%	0	-	probably_damaging(0.989)	tolerated(0.12)	deleterious(0.700)	HMMPfam_DAGK_acc,HMMSmart_DAGKa
DGKI	9162	genome.wustl.edu	37	7	137363389	137363389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004717.2	-1	reviewed	p.V174M	0.938	288	0.3%	248	29%	0	-	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
AKR1D1	6718	genome.wustl.edu	37	7	137798460	137798460	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005989.2	+1	validated	p.E294*	1.000	39	0%	55	29.1%	0	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
TTC26	79989	genome.wustl.edu	37	7	138872249	138872249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024926.2	+1	validated	p.G506D	1.000	307	0%	213	29.1%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBN2	254048	genome.wustl.edu	37	7	138951117	138951117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173569.3	+1	validated	p.F395L	1.000	144	0%	107	32.7%	1	0%	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	NULL
UBN2	254048	genome.wustl.edu	37	7	138968377	138968377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173569.3	+1	validated	p.S826Y	1.000	235	0%	250	26.4%	3	0%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
TBXAS1	6916	genome.wustl.edu	37	7	139657487	139657487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001061.4	+1	reviewed	p.R249Q	1.000	147	0%	105	31.4%	10	0%	possibly_damaging(0.85)	tolerated(0.13)	deleterious(0.580)	HMMPfam_p450,superfamily_Cytochrome P450
SLC37A3	84255	genome.wustl.edu	37	7	140051902	140051902	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207113.1	-1	validated	p.I221	0.529	75	0%	75	28%	4	25%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RAB19	401409	genome.wustl.edu	37	7	140107637	140107637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008749.2	+1	validated	p.K64T	1.000	67	0%	84	23.8%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
DENND2A	27147	genome.wustl.edu	37	7	140219460	140219460	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015689.3	-1	validated	p.S990	0.979	104	0%	94	25.5%	1	0%	-	-	-	NULL
AGK	55750	genome.wustl.edu	37	7	141341162	141341162	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018238.3	+1	validated	p.R281*	0.300	273	0%	231	29.4%	4	0%	-	-	-	NULL
TAS2R5	54429	genome.wustl.edu	37	7	141490276	141490276	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018980.2	+1	reviewed	p.F39V	0.000	139	0%	150	26.7%	0	-	benign(0.124)	tolerated(0.06)	neutral(0.333)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R5	54429	genome.wustl.edu	37	7	141490388	141490388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018980.2	+1	reviewed	p.R76H	0.000	146	0%	159	30.2%	0	-	possibly_damaging(0.546)	tolerated(0.15)	neutral(0.426)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
CLEC5A	23601	genome.wustl.edu	37	7	141629972	141629972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013252.2	-1	reviewed	p.T167A	0.390	168	0%	88	33%	2	0%	benign(0.106)	tolerated(0.22)	neutral(0.050)	HMMSmart_SM00034,superfamily_C-type lectin-like
TAS2R38	5726	genome.wustl.edu	37	7	141672668	141672668	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176817.4	-1	reviewed	p.R274	0.002	138	0%	137	35.8%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
MGAM	8972	genome.wustl.edu	37	7	141708421	141708421	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004668.2	+1	reviewed	p.T81	0.000	137	0%	109	26.6%	0	-	-	-	-	NULL
MGAM	8972	genome.wustl.edu	37	7	141708461	141708461	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004668.2	+1	reviewed	p.E95*	0.073	165	0%	137	30.7%	0	-	-	-	-	HMMPfam_Trefoil
MGAM	8972	genome.wustl.edu	37	7	141765569	141765569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000475668	+1	known	p.R1570C	1.000	86	0%	70	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
MGAM	8972	genome.wustl.edu	37	7	141786119	141786119	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000475668	+1	known	p.V2247	0.987	82	0%	73	28.8%	0	-	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
TRBV7-1	28597	genome.wustl.edu	37	7	142032362	142032362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390354	+1	known	p.G61D	0.000	71	0%	92	31.5%	0	-	probably_damaging(0.985)	tolerated(0.16)	deleterious(0.491)	HMMPfam_V-set,superfamily_SSF48726
TRBV5-6	28609	genome.wustl.edu	37	7	142131838	142131838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390375	-1	known	p.L14M	0.574	211	0%	175	29.7%	1	0%	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	NULL
TRBV5-5	28610	genome.wustl.edu	37	7	142149022	142149022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390372	-1	known	p.F83L	0.761	357	0%	336	28%	0	-	possibly_damaging(0.866)	deleterious(0.01)	deleterious(0.741)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV5-4	28611	genome.wustl.edu	37	7	142168615	142168615	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000454561	-1	known	p.Q36	0.004	289	0%	258	25.2%	0	-	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV7-3	28595	genome.wustl.edu	37	7	142247177	142247177	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390361	-1	known	p.V93	0.008	146	0%	132	35.6%	0	-	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
PRSS1	5644	genome.wustl.edu	37	7	142458437	142458437	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002769.3	+1	reviewed	p.I24	0.993	251	0%	228	24.1%	95	43.1%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
EPHB6	2051	genome.wustl.edu	37	7	142566296	142566296	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004445.3	+1	reviewed	p.R695	0.849	45	0%	51	43.1%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRPV6	55503	genome.wustl.edu	37	7	142583225	142583225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018646.2	-1	validated	p.L13I	0.997	104	0%	87	23%	0	-	unknown(0)	deleterious(0)	-	superfamily_Ankyrin repeat
TRPV5	56302	genome.wustl.edu	37	7	142606687	142606687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019841.4	-1	reviewed	p.E622K	0.456	130	0%	162	32.7%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
TRPV5	56302	genome.wustl.edu	37	7	142612140	142612140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019841.4	-1	reviewed	p.S455P	1.000	87	0%	100	26%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Ion_trans
TRPV5	56302	genome.wustl.edu	37	7	142622670	142622670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019841.4	-1	reviewed	p.R359H	0.997	70	0%	69	23.2%	0	-	benign(0.03)	tolerated(0.36)	neutral(0.022)	NULL
KEL	3792	genome.wustl.edu	37	7	142643397	142643397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000420.2	-1	reviewed	p.R404H	0.000	76	0%	58	32.8%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
OR6V1	346517	genome.wustl.edu	37	7	142749962	142749962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001667.1	+1	provisional	p.F175L	0.981	358	0%	332	30.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PIP	5304	genome.wustl.edu	37	7	142829278	142829278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002652.2	+1	validated	p.L23F	0.021	355	0%	432	25.7%	0	-	possibly_damaging(0.578)	tolerated(0.07)	deleterious(0.518)	HMMPfam_SVA
TAS2R39	259285	genome.wustl.edu	37	7	142880877	142880877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176881.2	+1	provisional	p.F122L	0.000	402	0.2%	420	34.8%	0	-	benign(0.157)	tolerated(0.24)	neutral(0.051)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R39	259285	genome.wustl.edu	37	7	142881415	142881415	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176881.2	+1	provisional	p.A302P	0.829	150	0%	149	36.2%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R60	338398	genome.wustl.edu	37	7	143141092	143141092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177437.1	+1	provisional	p.D183N	0.000	617	0%	628	28.7%	0	-	benign(0)	tolerated(0.97)	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R60	338398	genome.wustl.edu	37	7	143141117	143141117	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177437.1	+1	provisional	p.K191I	0.001	652	0%	640	30.3%	0	-	benign(0.106)	tolerated(0.17)	neutral(0.067)	HMMPfam_TAS2R,superfamily_SSF81321
CTAGE6P	340307	genome.wustl.edu	37	7	143454163	143454163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178561.4	-1	validated	p.T197A	0.030	586	0%	475	8.8%	1	0%	-	-	-	NULL
FAM115A	9747	genome.wustl.edu	37	7	143573387	143573387	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014719.1	-1	predicted	p.L105	0.954	217	0%	188	22.3%	6	66.6%	-	-	-	NULL
FAM115A	9747	genome.wustl.edu	37	7	143573567	143573567	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014719.1	-1	predicted	p.G45	0.999	113	0%	128	31.2%	7	57.1%	-	-	-	NULL
OR2F1	26211	genome.wustl.edu	37	7	143657094	143657094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012369.2	+1	provisional	p.E11*	0.001	560	0%	423	31.9%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR2A5	393046	genome.wustl.edu	37	7	143747674	143747674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012365.1	+1	provisional	p.F60L	0.995	359	0%	299	32.8%	0	-	benign(0.085)	deleterious(0.01)	neutral(0.412)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A5	393046	genome.wustl.edu	37	7	143747828	143747828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012365.1	+1	provisional	p.C112R	0.876	413	0%	382	14.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR2A2	442361	genome.wustl.edu	37	7	143807425	143807425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005480.2	+1	validated	p.F250L	0.762	221	0%	243	30.9%	0	-	benign(0.085)	deleterious(0)	neutral(0.451)	HMMPfam_7tm_1,superfamily_SSF81321
OR2A7	401427	genome.wustl.edu	37	7	143955889	143955889	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005328.1	-1	provisional	p.S278T	0.985	665	0%	496	13.1%	1	0%	probably_damaging(0.973)	tolerated(0.62)	neutral(0.419)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGEF5	7984	genome.wustl.edu	37	7	144060518	144060518	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005435.3	+1	reviewed	p.A252	0.000	3700	0%	3233	12.6%	8	0%	-	-	-	NULL
ARHGEF5	7984	genome.wustl.edu	37	7	144075859	144075859	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000474817	+1	known	p.P712L	1.000	361	0%	311	27.3%	26	53.8%	-	-	-	superfamily_SH3-domain
CNTNAP2	26047	genome.wustl.edu	37	7	147600793	147600793	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014141.5	+1	reviewed	p.C745	0.217	32	0%	61	32.8%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
CNTNAP2	26047	genome.wustl.edu	37	7	147844734	147844734	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014141.5	+1	reviewed	p.P902	0.995	89	1.1%	76	19.7%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CNTNAP2	26047	genome.wustl.edu	37	7	147869506	147869506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014141.5	+1	reviewed	p.E982D	1.000	201	0%	167	29.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00181
CNTNAP2	26047	genome.wustl.edu	37	7	147926752	147926752	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014141.5	+1	reviewed	p.R1088*	0.997	358	0%	269	31.2%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EZH2	2146	genome.wustl.edu	37	7	148512044	148512044	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004456.3	-1	reviewed	p.Q545P	1.000	90	0%	45	37.8%	17	52.9%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_SSF82199
EZH2	2146	genome.wustl.edu	37	7	148513776	148513776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004456.3	-1	reviewed	p.R502Q	1.000	72	0%	64	20.3%	14	28.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF82199
ZNF777	27153	genome.wustl.edu	37	7	149129023	149129023	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015694.2	-1	validated	p.C780	1.000	52	0%	34	23.5%	27	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100288645	100288645	genome.wustl.edu	37	7	149152117	149152117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342805.1	+1	model	p.R30I	0.000	44	0%	51	33.3%	0	-	-	-	-	NULL
SSPO	23145	genome.wustl.edu	37	7	149475974	149475974	+	Missense_Mutation	SNP	G	G	A	rs144815905	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000378016	+1	known	p.E314K	0.988	21	0%	30	23.3%	1	0%	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
SSPO	23145	genome.wustl.edu	37	7	149515811	149515811	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000378016	+1	known	p.W3904*	0.774	14	0.000	7	0.571	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ZNF862	643641	genome.wustl.edu	37	7	149558040	149558040	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099220.1	+1	provisional	p.T597	0.619	38	0%	33	27.3%	1	100%	-	-	-	NULL
GIMAP4	55303	genome.wustl.edu	37	7	150269375	150269375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018326.2	+1	reviewed	p.S73G	0.000	192	0%	182	29.1%	13	0%	probably_damaging(0.965)	tolerated(0.24)	neutral(0.444)	HMMPfam_AIG1,superfamily_SSF52540
GIMAP4	55303	genome.wustl.edu	37	7	150270043	150270043	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018326.2	+1	reviewed	p.Q295H	0.000	367	0%	363	34.2%	23	0%	possibly_damaging(0.924)	deleterious(0.02)	deleterious(0.756)	NULL
ABP1	26	genome.wustl.edu	37	7	150554962	150554962	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001091.2	+1	reviewed	p.I468	1.000	81	0%	66	27.3%	15	66.6%	-	-	-	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
NOS3	4846	genome.wustl.edu	37	7	150698682	150698682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000603.4	+1	reviewed	p.K493N	0.999	95	0%	91	12.1%	6	0%	possibly_damaging(0.904)	deleterious(0.04)	deleterious(0.708)	NULL
AGAP3	116988	genome.wustl.edu	37	7	150815686	150815686	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000467724	+1	known	p.P85L	0.969	177	0%	140	37.1%	35	14.2%	-	-	-	NULL
CHPF2	54480	genome.wustl.edu	37	7	150931335	150931335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019015.1	+1	provisional	p.N80D	1.000	33	0%	40	22.5%	39	20.5%	benign(0.005)	tolerated(0.81)	neutral(0.001)	NULL
GALNT11	63917	genome.wustl.edu	37	7	151802422	151802422	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022087.2	+1	validated	p.R227*	1.000	228	0%	167	28.7%	10	0%	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT11	63917	genome.wustl.edu	37	7	151807728	151807728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022087.2	+1	validated	p.R360W	1.000	311	0%	266	34.6%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151836855	151836855	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170606.2	-1	reviewed	p.R4789*	1.000	237	0%	157	22.9%	8	37.5%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MLL3	58508	genome.wustl.edu	37	7	151873381	151873381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170606.2	-1	reviewed	p.L3053I	1.000	118	0%	131	38.9%	1	0%	probably_damaging(0.995)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151877958	151877958	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170606.2	-1	reviewed	p.G2329	0.005	93	0%	93	24.7%	3	0%	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151884866	151884866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170606.2	-1	reviewed	p.S1576Y	0.934	377	0%	267	28.8%	0	-	probably_damaging(0.992)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151904508	151904508	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170606.2	-1	reviewed	p.E1240*	1.000	265	0%	218	28%	0	-	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151919101	151919101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170606.2	-1	reviewed	p.K1162Q	1.000	236	0%	168	29.2%	0	-	probably_damaging(0.977)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151944997	151944997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170606.2	-1	reviewed	p.R841Q	0.989	885	0%	743	9.8%	6	83.3%	probably_damaging(1)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	152012244	152012244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170606.2	-1	reviewed	p.R190Q	0.980	329	0%	301	29.2%	1	100%	probably_damaging(0.995)	-	-	NULL
DPP6	1804	genome.wustl.edu	37	7	154172036	154172036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000377770	+1	known	p.S124N	0.996	192	0%	163	28.8%	0	-	probably_damaging(0.996)	tolerated(0.59)	neutral(0.466)	NULL
DPP6	1804	genome.wustl.edu	37	7	154237637	154237637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000377770	+1	known	p.E160K	1.000	65	0%	49	12.2%	0	-	benign(0.122)	tolerated(0.1)	neutral(0.296)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
LOC100132707	100132707	genome.wustl.edu	37	7	154738352	154738352	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_024476.1	+1	validated	NULL	0.001	82	0%	74	25.7%	2	0%	-	-	-	-
CNPY1	285888	genome.wustl.edu	37	7	155301672	155301672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001103176.1	-1	validated	p.A21T	0.995	95	0%	82	23.2%	0	-	probably_damaging(0.998)	tolerated(0.32)	deleterious(0.498)	NULL
RBM33	155435	genome.wustl.edu	37	7	155499557	155499557	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053043.2	+1	validated	p.L248R	1.000	47	0%	25	20%	1	0%	unknown(0)	deleterious(0)	-	NULL
LMBR1	64327	genome.wustl.edu	37	7	156549156	156549156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022458.3	-1	reviewed	p.L230I	1.000	202	0%	153	30.7%	8	50%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMPfam_LMBR1
NOM1	64434	genome.wustl.edu	37	7	156762286	156762286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138400.1	+1	provisional	p.F824L	1.000	276	0%	237	31.6%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UBE3C	9690	genome.wustl.edu	37	7	156974813	156974813	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014671.2	+1	validated	p.F261C	1.000	157	0%	123	32.5%	30	23.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PTPRN2	5799	genome.wustl.edu	37	7	157341694	157341694	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002847.3	-1	reviewed	p.I974	1.000	145	0%	109	30.3%	4	50%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRN2	5799	genome.wustl.edu	37	7	157691371	157691371	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002847.3	-1	reviewed	p.V594	0.000	196	0%	179	27.4%	1	0%	-	-	-	NULL
PTPRN2	5799	genome.wustl.edu	37	7	157926682	157926682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002847.3	-1	reviewed	p.L415I	0.000	60	0%	94	31.9%	4	0%	possibly_damaging(0.718)	tolerated(0.24)	neutral(0.297)	NULL
WDR60	55112	genome.wustl.edu	37	7	158669320	158669320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018051.4	+1	validated	p.E171K	0.792	76	0%	54	29.6%	2	50%	possibly_damaging(0.786)	tolerated(0.53)	neutral(0.302)	superfamily_WD40 repeat-like
WDR60	55112	genome.wustl.edu	37	7	158715071	158715071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018051.4	+1	validated	p.R642Q	0.997	104	0%	81	32.1%	5	40%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_WD40 repeat-like
WDR60	55112	genome.wustl.edu	37	7	158718905	158718905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018051.4	+1	validated	p.R762Q	0.001	46	0%	34	20.6%	5	60%	benign(0.023)	tolerated(0.3)	neutral(0.030)	superfamily_WD40 repeat-like
ZNF596	169270	genome.wustl.edu	37	8	196239	196239	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042415.1	+1	validated	p.L464	0.001	198	0%	165	31.5%	1	100%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
DLGAP2	9228	genome.wustl.edu	37	8	1513983	1513983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004745.3	+1	reviewed	p.K375N	0.831	38	0%	47	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2021538	2021538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003970.2	+1	validated	p.R360W	0.964	34	0%	21	23.8%	0	-	benign(0.007)	deleterious(0.04)	neutral(0.349)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
MYOM2	9172	genome.wustl.edu	37	8	2044163	2044163	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003970.2	+1	validated	p.P734	0.000	151	0%	142	26.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MYOM2	9172	genome.wustl.edu	37	8	2088658	2088658	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003970.2	+1	validated	p.I1271	0.588	184	0%	198	24.2%	3	0%	-	-	-	superfamily_SSF48726
MYOM2	9172	genome.wustl.edu	37	8	2092630	2092630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003970.2	+1	validated	p.E1375K	1.000	190	0%	166	30.7%	14	57.1%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CSMD1	64478	genome.wustl.edu	37	8	2813234	2813234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033225.5	-1	validated	p.L3292I	1.000	119	0%	104	30.8%	0	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	2815227	2815227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033225.5	-1	validated	p.E3270K	0.998	16	0%	15	33.3%	0	-	probably_damaging(0.971)	tolerated(0.24)	neutral(0.450)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	2967840	2967840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033225.5	-1	validated	p.V2151I	0.976	19	0%	33	33.3%	0	-	benign(0.073)	tolerated(1)	neutral(0.005)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3443700	3443700	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033225.5	-1	validated	p.E395*	1.000	64	0%	63	28.6%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	4495007	4495007	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033225.5	-1	validated	p.P53	0.296	153	0%	134	37.3%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MCPH1	79648	genome.wustl.edu	37	8	6302112	6302112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024596.3	+1	reviewed	p.K290T	0.000	102	0%	96	39.6%	5	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ANGPT2	285	genome.wustl.edu	37	8	6420363	6420363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001147.2	-1	reviewed	p.K31N	0.974	103	0%	80	25%	2	0%	possibly_damaging(0.61)	deleterious(0)	deleterious(0.656)	NULL
AGPAT5	55326	genome.wustl.edu	37	8	6612576	6612576	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018361.3	+1	reviewed	p.F250	1.000	66	0%	66	33.3%	26	42.3%	-	-	-	superfamily_SSF69593
ENSG00000221567	0	genome.wustl.edu	37	8	7055973	7055973	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000408640	+1	novel	NULL	0.031	109	0%	121	47.1%	0	-	-	-	-	-
USP17L1P	401447	genome.wustl.edu	37	8	7190680	7190680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000382655	+1	known	p.L258I	0.029	134	0%	129	20.9%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP17L1P	401447	genome.wustl.edu	37	8	7190721	7190721	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000382655	+1	known	p.T271	0.000	122	0%	117	15.4%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF705G	100131980	genome.wustl.edu	37	8	7215867	7215867	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000400156	-1	known	p.E178	0.966	747	0.1%	659	12.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RP1L1	94137	genome.wustl.edu	37	8	10466150	10466150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178857.5	-1	validated	p.A1820T	0.000	587	0%	385	31.7%	0	-	unknown(0)	tolerated(0.48)	-	HMMPfam_S-antigen
RP1L1	94137	genome.wustl.edu	37	8	10467572	10467572	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178857.5	-1	validated	p.G1346*	0.001	224	0%	165	29.7%	0	-	-	-	-	NULL
SOX7	83595	genome.wustl.edu	37	8	10583419	10583419	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031439.2	-1	reviewed	p.F332	0.970	58	0%	44	34.1%	0	-	-	-	-	NULL
XKR6	286046	genome.wustl.edu	37	8	10756282	10756282	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173683.3	-1	provisional	p.S369*	1.000	304	0%	332	36.1%	0	-	-	-	-	HMMPfam_XK-related
MTMR9	66036	genome.wustl.edu	37	8	11177228	11177228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015458.3	+1	reviewed	p.S456Y	1.000	145	0%	139	27.3%	7	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF52799
MTMR9	66036	genome.wustl.edu	37	8	11180244	11180244	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015458.3	+1	reviewed	p.R533*	0.879	109	0%	84	33.3%	9	44.4%	-	-	-	NULL
USP17L2	377630	genome.wustl.edu	37	8	11995979	11995979	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201402.2	-1	validated	p.C97*	0.998	254	0%	223	17.5%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
LOC100287066	100287066	genome.wustl.edu	37	8	12147691	12147691	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342839.1	-1	model	p.Y33*	0.116	37	0%	33	27.3%	0	-	-	-	-	NULL
TUSC3	7991	genome.wustl.edu	37	8	15517109	15517109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006765.2	+1	reviewed	p.A174T	1.000	167	0%	125	28%	10	0%	benign(0.424)	tolerated(0.19)	neutral(0.187)	HMMPfam_OST3_OST6,superfamily_Thioredoxin-like
TUSC3	7991	genome.wustl.edu	37	8	15605946	15605946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006765.2	+1	reviewed	p.R334C	1.000	373	0%	298	30.2%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OST3_OST6
MSR1	4481	genome.wustl.edu	37	8	16026012	16026012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138715.2	-1	reviewed	p.E195D	0.000	153	0%	161	32.3%	4	0%	possibly_damaging(0.608)	deleterious(0.01)	deleterious(0.616)	NULL
ZDHHC2	51201	genome.wustl.edu	37	8	17055906	17055906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016353.4	+1	validated	p.D154Y	1.000	155	0%	90	40%	6	33.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_zf-DHHC
ZDHHC2	51201	genome.wustl.edu	37	8	17067516	17067516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016353.4	+1	validated	p.R269Q	0.995	73	0%	56	28.6%	3	0%	benign(0.164)	tolerated(0.55)	neutral(0.022)	NULL
MTMR7	9108	genome.wustl.edu	37	8	17206499	17206499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004686.4	-1	reviewed	p.R187Q	1.000	211	0%	156	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
MTMR7	9108	genome.wustl.edu	37	8	17218682	17218682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004686.4	-1	reviewed	p.R138W	0.991	249	0%	199	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_(Phosphotyrosine protein) phosphatases II
SLC7A2	6542	genome.wustl.edu	37	8	17407901	17407901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003046.5	+1	validated	p.C304R	1.000	53	0%	55	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
SLC7A2	6542	genome.wustl.edu	37	8	17409358	17409358	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003046.5	+1	validated	p.V346	0.981	191	0%	191	39.8%	0	-	-	-	-	HMMPfam_AA_permease
SLC7A2	6542	genome.wustl.edu	37	8	17419540	17419540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003046.5	+1	validated	p.A570V	0.000	162	0%	186	28%	0	-	benign(0)	tolerated(1)	-	NULL
MTUS1	57509	genome.wustl.edu	37	8	17507370	17507370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001924.2	-1	reviewed	p.M1162I	1.000	276	0%	236	24.6%	19	26.3%	possibly_damaging(0.452)	tolerated(0.28)	neutral(0.179)	NULL
MTUS1	57509	genome.wustl.edu	37	8	17554819	17554819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020749.4	-1	reviewed	p.R23Q	1.000	277	0%	297	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTUS1	57509	genome.wustl.edu	37	8	17601176	17601176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001924.2	-1	reviewed	p.N742H	0.001	153	0%	122	29.5%	8	37.5%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
MTUS1	57509	genome.wustl.edu	37	8	17611488	17611488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001924.2	-1	reviewed	p.S610L	0.906	243	0%	208	31.7%	2	100%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
PCM1	5108	genome.wustl.edu	37	8	17794695	17794695	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006197.3	+1	validated	p.K50T	1.000	28	0%	32	43.8%	4	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
PCM1	5108	genome.wustl.edu	37	8	17822266	17822266	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006197.3	+1	validated	p.E948D	0.993	169	0%	150	30.7%	6	50%	benign(0.183)	tolerated(0.41)	neutral(0.032)	NULL
NAT2	10	genome.wustl.edu	37	8	18257539	18257539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000015.2	+1	reviewed	p.R9I	1.000	370	0%	310	27.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF54001
NAT2	10	genome.wustl.edu	37	8	18258288	18258288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000015.2	+1	reviewed	p.T259A	0.002	176	0%	172	25%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_Acetyltransf_2,superfamily_SSF54001
PSD3	23362	genome.wustl.edu	37	8	18432689	18432689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015310.3	-1	validated	p.N863S	0.969	338	0%	326	27.6%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PSD3	23362	genome.wustl.edu	37	8	18656820	18656820	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015310.3	-1	validated	p.T689	0.002	148	0%	102	29.4%	1	0%	-	-	-	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7
PSD3	23362	genome.wustl.edu	37	8	18729300	18729300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015310.3	-1	validated	p.E358D	0.000	313	0%	330	37.6%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
SH2D4A	63898	genome.wustl.edu	37	8	19190570	19190570	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022071.3	+1	validated	p.E96*	0.989	58	0%	60	33.3%	0	-	-	-	-	NULL
CSGALNACT1	55790	genome.wustl.edu	37	8	19263255	19263255	+	RNA	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_024040.1	-1	validated	NULL	0.005	105	0%	100	26%	1	0%	-	-	-	-
CSGALNACT1	55790	genome.wustl.edu	37	8	19363211	19363211	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130518.1	-1	validated	p.L45	0.996	73	0%	74	31.1%	0	-	-	-	-	HMMPfam_CHGN
LPL	4023	genome.wustl.edu	37	8	19809312	19809312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000311322	+1	known	p.K94N	0.982	340	0%	290	27.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
LGI3	203190	genome.wustl.edu	37	8	22006416	22006416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139278.2	-1	validated	p.G302S	0.997	42	0%	32	40.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EPTP
BMP1	649	genome.wustl.edu	37	8	22035197	22035197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000354870	+1	known	p.R283I	0.019	203	0%	125	32%	0	-	unknown(0)	tolerated(0.07)	-	NULL
POLR3D	661	genome.wustl.edu	37	8	22106820	22106820	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001722.2	+1	reviewed	p.R307	1.000	104	0%	71	29.6%	30	23.3%	-	-	-	HMMPfam_RNA_pol_Rpc4
PIWIL2	55124	genome.wustl.edu	37	8	22173829	22173829	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135721.1	+1	validated	p.F760	0.643	182	0%	161	31.1%	0	-	-	-	-	HMMPfam_Piwi,superfamily_Ribonuclease H-like
PIWIL2	55124	genome.wustl.edu	37	8	22210570	22210570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135721.1	+1	validated	p.Q834H	1.000	174	0%	177	29.9%	0	-	probably_damaging(0.976)	tolerated(0.15)	deleterious(0.659)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
PPP3CC	5533	genome.wustl.edu	37	8	22368601	22368601	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005605.3	+1	provisional	p.R163*	1.000	153	0%	127	30.7%	12	0%	-	-	-	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
TNFRSF10D	8793	genome.wustl.edu	37	8	23002099	23002099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003840.3	-1	reviewed	p.D273G	0.028	92	0%	77	15.6%	11	18.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
LOXL2	4017	genome.wustl.edu	37	8	23174534	23174534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002318.2	-1	reviewed	p.R522C	1.000	79	0%	84	40.5%	56	1.7%	possibly_damaging(0.835)	tolerated(0.18)	neutral(0.374)	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
LOXL2	4017	genome.wustl.edu	37	8	23217622	23217622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002318.2	-1	reviewed	p.S171L	0.914	64	0%	44	31.8%	43	4.6%	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
ADAM7	8756	genome.wustl.edu	37	8	24298649	24298649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380789	+1	known	p.I10V	0.139	790	0%	541	30.7%	0	-	benign(0.156)	tolerated(0.54)	neutral(0.021)	HMMPfam_Pep_M12B_propep
ADAM7	8756	genome.wustl.edu	37	8	24350076	24350076	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380789	+1	known	p.N541H	0.401	120	0%	89	34.8%	0	-	possibly_damaging(0.847)	deleterious(0.02)	deleterious(0.708)	HMMPfam_ADAM_CR,HMMSmart_SM00608
NEFM	4741	genome.wustl.edu	37	8	24771500	24771500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005382.2	+1	reviewed	p.S65L	0.990	13	0%	13	53.8%	0	-	possibly_damaging(0.915)	tolerated(0.12)	deleterious(0.627)	HMMPfam_Filament_head
DOCK5	80005	genome.wustl.edu	37	8	25265505	25265505	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024940.6	+1	validated	p.I1700	0.382	39	0%	31	29%	1	0%	-	-	-	NULL
CDCA2	157313	genome.wustl.edu	37	8	25346139	25346139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152562.2	+1	validated	p.K535N	0.984	159	0%	189	24.9%	8	87.5%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
CDCA2	157313	genome.wustl.edu	37	8	25364438	25364438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152562.2	+1	validated	p.F752L	0.001	152	0%	144	29.9%	7	57.1%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
PNMA2	10687	genome.wustl.edu	37	8	26365708	26365708	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007257.5	-1	validated	p.A188	0.994	106	0%	123	36.6%	0	-	-	-	-	NULL
DPYSL2	1808	genome.wustl.edu	37	8	26481792	26481792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001386.4	+1	validated	p.Q149H	1.000	198	0%	208	28.8%	17	35.2%	benign(0.261)	tolerated(0.37)	neutral(0.046)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
ADRA1A	148	genome.wustl.edu	37	8	26721722	26721722	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033303.3	-1	reviewed	p.T255	0.987	28	0%	21	38.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ADRA1A	148	genome.wustl.edu	37	8	26722090	26722090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033303.3	-1	reviewed	p.R133C	1.000	47	0%	27	33.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_SSF81321
PTK2B	2185	genome.wustl.edu	37	8	27297824	27297824	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004103.3	+1	reviewed	p.I635	1.000	63	0%	66	33.3%	5	20%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ESCO2	157570	genome.wustl.edu	37	8	27637713	27637713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017420.2	+1	reviewed	p.S295Y	1.000	180	0%	142	30.3%	6	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
C8orf80	389643	genome.wustl.edu	37	8	27925241	27925241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010906.1	-1	provisional	p.K167N	1.000	31	0%	37	29.7%	0	-	probably_damaging(0.957)	tolerated(0.12)	deleterious(0.661)	superfamily_P-loop containing nucleoside triphosphate hydrolases
C8orf80	389643	genome.wustl.edu	37	8	27927154	27927154	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010906.1	-1	provisional	p.S55*	0.986	135	0%	114	31.6%	0	-	-	-	-	NULL
ELP3	55140	genome.wustl.edu	37	8	27954825	27954825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018091.5	+1	validated	p.D37N	1.000	151	0%	176	32.4%	8	0%	benign(0)	tolerated(1)	-	NULL
ELP3	55140	genome.wustl.edu	37	8	27970632	27970632	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018091.5	+1	validated	p.R187*	1.000	124	0%	114	23.7%	11	0%	-	-	-	HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
EXTL3	2137	genome.wustl.edu	37	8	28575109	28575109	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001440.2	+1	provisional	p.Q511H	0.988	131	0%	118	21.2%	12	58.3%	benign(0.143)	deleterious(0)	neutral(0.457)	NULL
HMBOX1	79618	genome.wustl.edu	37	8	28876391	28876391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135726.1	+1	validated	p.R271Q	1.000	138	0%	128	32%	2	0%	benign(0.233)	deleterious(0.01)	neutral(0.429)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
KIF13B	23303	genome.wustl.edu	37	8	28976451	28976451	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015254.3	-1	validated	p.A1198	0.068	272	0%	252	31%	7	57.1%	-	-	-	NULL
RBPMS	11030	genome.wustl.edu	37	8	30407095	30407095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000287771	+1	known	p.P203S	0.001	121	0%	104	36.5%	4	0%	unknown(0)	-	-	NULL
GSR	2936	genome.wustl.edu	37	8	30553990	30553990	+	Silent	SNP	G	G	A	rs140455984	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000637.2	-1	validated	p.S234	0.976	194	0%	169	35.5%	36	22.2%	benign(0.356)	tolerated(0.09)	neutral(0.409)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
TEX15	56154	genome.wustl.edu	37	8	30699680	30699680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031271.3	-1	validated	p.N2285S	0.000	141	0%	114	29.8%	0	-	benign(0)	tolerated(0.91)	-	NULL
TEX15	56154	genome.wustl.edu	37	8	30699775	30699775	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031271.3	-1	validated	p.F2253L	0.001	204	0%	159	27%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
TEX15	56154	genome.wustl.edu	37	8	30700596	30700596	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031271.3	-1	validated	p.L1980	0.017	153	0%	142	28.9%	0	-	-	-	-	NULL
TEX15	56154	genome.wustl.edu	37	8	30702443	30702443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031271.3	-1	validated	p.S1364Y	0.055	177	0%	161	29.2%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
TEX15	56154	genome.wustl.edu	37	8	30704243	30704243	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031271.3	-1	validated	p.L764R	0.000	184	0%	192	33.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TEX15	56154	genome.wustl.edu	37	8	30706455	30706455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031271.3	-1	validated	p.L27I	0.001	186	0%	145	12.4%	0	-	benign(0.039)	tolerated(0.86)	neutral(0.003)	NULL
WRN	7486	genome.wustl.edu	37	8	30916055	30916055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000553.4	+1	reviewed	p.R31I	0.091	56	0%	50	28%	2	0%	benign(0.128)	deleterious(0)	neutral(0.455)	NULL
NRG1	3084	genome.wustl.edu	37	8	32453487	32453487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013956.3	+1	reviewed	p.N81S	1.000	236	0%	191	35.1%	0	-	possibly_damaging(0.866)	tolerated(0.13)	deleterious(0.588)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
NRG1	3084	genome.wustl.edu	37	8	32620851	32620851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013960.3	+1	reviewed	p.L462I	1.000	293	0%	249	28.1%	0	-	benign(0.313)	deleterious(0)	deleterious(0.542)	HMMPfam_Neuregulin
NRG1	3084	genome.wustl.edu	37	8	32621643	32621643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013956.3	+1	reviewed	p.R554I	1.000	132	0%	108	29.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neuregulin
FUT10	84750	genome.wustl.edu	37	8	33246820	33246820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032664.3	-1	validated	p.E291D	1.000	153	0%	151	29.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_10
FUT10	84750	genome.wustl.edu	37	8	33246942	33246942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032664.3	-1	validated	p.D251Y	1.000	240	0%	276	30.8%	3	0%	possibly_damaging(0.682)	deleterious(0.01)	deleterious(0.649)	HMMPfam_Glyco_transf_10
DUSP26	78986	genome.wustl.edu	37	8	33455008	33455008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024025.1	-1	provisional	p.A9V	0.987	54	0%	96	37.5%	0	-	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	NULL
UNC5D	137970	genome.wustl.edu	37	8	35406937	35406937	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080872.2	+1	validated	p.A77	0.005	78	0%	63	36.5%	0	-	-	-	-	superfamily_Immunoglobulin
UNC5D	137970	genome.wustl.edu	37	8	35631904	35631904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080872.2	+1	validated	p.S856P	1.000	134	0%	116	33.6%	0	-	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	HMMSmart_SM00005,superfamily_DEATH domain
KCNU1	157855	genome.wustl.edu	37	8	36766859	36766859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031836.2	+1	validated	p.R713W	0.919	484	0.2%	494	28.3%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37728899	37728899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002814.2	-1	validated	p.N1141H	0.488	161	0%	146	37%	2	50%	possibly_damaging(0.817)	deleterious(0)	deleterious(0.754)	NULL
ASH2L	9070	genome.wustl.edu	37	8	37967931	37967931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004674.3	+1	validated	p.H146N	1.000	134	0%	198	29.3%	13	38.4%	-	-	-	NULL
BAG4	9530	genome.wustl.edu	37	8	38067826	38067826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004874.2	+1	reviewed	p.V397I	1.000	145	0%	151	37.1%	9	11.1%	possibly_damaging(0.94)	deleterious(0.03)	deleterious(0.750)	HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491
DDHD2	23259	genome.wustl.edu	37	8	38109481	38109481	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015214.2	+1	validated	p.E466*	0.002	154	0%	182	39%	2	0%	-	-	-	NULL
DDHD2	23259	genome.wustl.edu	37	8	38117628	38117628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015214.2	+1	validated	p.P709S	1.000	220	0%	201	28.4%	8	12.5%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38178677	38178677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023034.1	-1	reviewed	p.K574N	1.000	160	0%	159	29.6%	10	30%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38187182	38187182	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023034.1	-1	reviewed	p.Q432P	1.000	122	0%	106	27.4%	14	57.1%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38196054	38196054	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023034.1	-1	reviewed	p.P249	0.934	156	0%	127	26%	6	83.3%	-	-	-	NULL
FGFR1	2260	genome.wustl.edu	37	8	38272322	38272322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023110.2	-1	reviewed	p.I651T	1.000	206	0%	194	35.6%	73	36.9%	possibly_damaging(0.882)	tolerated(0.14)	deleterious(0.594)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ADAM9	8754	genome.wustl.edu	37	8	38880697	38880697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003816.2	+1	reviewed	p.R256Q	1.000	201	0%	183	33.3%	19	42.1%	possibly_damaging(0.551)	deleterious(0.04)	deleterious(0.536)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM9	8754	genome.wustl.edu	37	8	38934863	38934863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003816.2	+1	reviewed	p.F605S	1.000	174	0%	141	28.4%	51	49%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM18	8749	genome.wustl.edu	37	8	39466611	39466611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014237.1	+1	reviewed	p.S80Y	0.000	81	0%	49	10.2%	0	-	possibly_damaging(0.731)	deleterious(0.03)	deleterious(0.631)	HMMPfam_Pep_M12B_propep
IDO1	3620	genome.wustl.edu	37	8	39782841	39782841	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002164.4	+1	validated	p.V269	0.158	31	0%	31	22.6%	11	36.3%	-	-	-	HMMPfam_IDO,PatternScan_IDO_1
SFRP1	6422	genome.wustl.edu	37	8	41122963	41122963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003012.4	-1	reviewed	p.K223T	1.000	97	0%	95	30.5%	1	0%	probably_damaging(0.963)	tolerated(0.63)	neutral(0.409)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
ANK1	286	genome.wustl.edu	37	8	41522530	41522530	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142445.1	-1	reviewed	p.F4	0.584	101	0%	114	28.9%	0	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41584808	41584808	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142446.1	-1	reviewed	p.F162C	1.000	78	0%	59	42.4%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
KAT6A	7994	genome.wustl.edu	37	8	41790208	41790208	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099412.1	-1	validated	p.R1844	1.000	103	0%	91	29.7%	9	33.3%	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41794856	41794856	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099412.1	-1	validated	p.S1090	0.996	248	0%	183	24%	4	0%	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41798556	41798556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099412.1	-1	validated	p.R948Q	1.000	332	0%	314	29%	5	100%	unknown(0)	deleterious(0.03)	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41834795	41834795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099412.1	-1	validated	p.K365T	1.000	166	0%	148	25.7%	6	50%	unknown(0)	deleterious(0.01)	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41838395	41838395	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099412.1	-1	validated	p.C292	1.000	420	0%	327	26%	4	0%	-	-	-	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
IKBKB	3551	genome.wustl.edu	37	8	42171889	42171889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001556.1	+1	validated	p.D248Y	1.000	139	0%	146	35.6%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Kinase_like
DKK4	27121	genome.wustl.edu	37	8	42231804	42231804	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014420.2	-1	reviewed	p.T163	0.829	235	0%	239	72%	0	-	-	-	-	NULL
DKK4	27121	genome.wustl.edu	37	8	42233288	42233288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014420.2	-1	reviewed	p.D58N	0.021	68	0%	65	33.8%	0	-	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_Dickkopf_N
SLC20A2	6575	genome.wustl.edu	37	8	42329698	42329698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006749.3	-1	provisional	p.R71C	1.000	475	0%	467	31%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHO4
C8orf40	114926	genome.wustl.edu	37	8	42401727	42401727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135674.1	+1	validated	p.G38S	0.703	77	0%	81	38.3%	49	53%	benign(0.094)	tolerated(0.34)	neutral(0.030)	NULL
THAP1	55145	genome.wustl.edu	37	8	42693313	42693313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018105.2	-1	reviewed	p.Q145R	1.000	77	0%	70	24.3%	7	42.8%	probably_damaging(0.995)	tolerated(0.25)	deleterious(0.494)	NULL
FNTA	2339	genome.wustl.edu	37	8	42940342	42940342	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002027.2	+1	reviewed	p.K353Q	1.000	123	0%	84	36.9%	65	43%	benign(0.262)	tolerated(0.28)	neutral(0.059)	superfamily_Protein prenylyltransferase
SGK196	84197	genome.wustl.edu	37	8	42977319	42977319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032237.3	+1	validated	p.D118Y	1.000	155	0%	120	24.2%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
HGSNAT	138050	genome.wustl.edu	37	8	43054563	43054563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152419.2	+1	reviewed	p.E587K	0.996	78	0%	37	24.3%	21	23.8%	benign(0.027)	tolerated(0.63)	neutral(0.005)	NULL
LOC100287980	100287980	genome.wustl.edu	37	8	48001307	48001307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342844.1	-1	model	p.K204N	0.237	46	0%	34	23.5%	0	-	-	-	-	NULL
LOC100287980	100287980	genome.wustl.edu	37	8	48001409	48001409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342844.1	-1	model	p.K170N	0.026	61	0%	39	33.3%	0	-	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48869951	48869952	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000314191	-1	known	p.L65fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
MCM4	4173	genome.wustl.edu	37	8	48883093	48883093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005914.2	+1	reviewed	p.G486D	0.991	179	0%	128	28.1%	45	42.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540
MCM4	4173	genome.wustl.edu	37	8	48888325	48888325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005914.2	+1	reviewed	p.K806E	1.000	66	0%	51	37.3%	76	43.4%	unknown(0)	tolerated(0.38)	-	NULL
EFCAB1	79645	genome.wustl.edu	37	8	49642285	49642285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024593.3	-1	validated	p.K155N	1.000	51	0%	59	32.2%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_EFh,superfamily_SSF47473
SNTG1	54212	genome.wustl.edu	37	8	51314775	51314775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018967.2	+1	reviewed	p.K11N	1.000	201	0%	154	14.9%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52232460	52232460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144651.4	-1	validated	p.E1461D	0.007	63	0%	48	29.2%	0	-	benign(0.035)	-	-	NULL
PXDNL	137902	genome.wustl.edu	37	8	52370189	52370189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144651.4	-1	validated	p.V284A	1.000	379	0%	279	25.8%	0	-	benign(0.058)	tolerated(0.06)	neutral(0.326)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PXDNL	137902	genome.wustl.edu	37	8	52567294	52567294	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144651.4	-1	validated	p.E64A	1.000	90	0%	70	37.1%	0	-	possibly_damaging(0.941)	deleterious(0.05)	deleterious(0.732)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PCMTD1	115294	genome.wustl.edu	37	8	52733065	52733065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052937.2	-1	validated	p.K307T	1.000	391	0%	279	16.8%	8	50%	possibly_damaging(0.736)	tolerated(0.35)	neutral(0.290)	NULL
ST18	9705	genome.wustl.edu	37	8	53084693	53084693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014682.2	-1	validated	p.F243C	0.006	101	0%	126	27.8%	0	-	possibly_damaging(0.865)	deleterious(0.02)	deleterious(0.718)	NULL
ST18	9705	genome.wustl.edu	37	8	53085108	53085108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014682.2	-1	validated	p.L105I	0.017	79	0%	66	37.9%	0	-	possibly_damaging(0.528)	tolerated(0.11)	neutral(0.450)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53568594	53568594	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014781.4	-1	reviewed	p.K1265	0.927	119	0%	104	32.7%	9	66.6%	-	-	-	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53570293	53570293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014781.4	-1	reviewed	p.T699M	1.000	172	0%	168	32.1%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP6V1H	51606	genome.wustl.edu	37	8	54684728	54684728	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015941.2	-1	reviewed	e9-1	1.000	120	0%	157	29.9%	0	-	-	-	-	-
TCEA1	6917	genome.wustl.edu	37	8	54891683	54891683	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006756.2	-1	validated	p.E243*	1.000	254	0%	201	11.9%	58	0%	-	-	-	HMMPfam_TFIIS_M,superfamily_Zinc beta-ribbon
MRPL15	29088	genome.wustl.edu	37	8	55060186	55060186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014175.3	+1	reviewed	p.F266L	1.000	144	0%	128	18%	136	42.6%	benign(0.1)	deleterious(0.04)	neutral(0.356)	NULL
RP1	6101	genome.wustl.edu	37	8	55538119	55538119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006269.1	+1	reviewed	p.E559D	0.637	103	0%	61	32.8%	0	-	possibly_damaging(0.888)	tolerated(0.32)	neutral(0.371)	NULL
RP1	6101	genome.wustl.edu	37	8	55538698	55538698	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006269.1	+1	reviewed	p.T752	0.000	88	0%	59	30.5%	0	-	-	-	-	NULL
RP1	6101	genome.wustl.edu	37	8	55540821	55540821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006269.1	+1	reviewed	p.R1460I	0.998	167	0%	124	31.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RP1	6101	genome.wustl.edu	37	8	55541828	55541828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006269.1	+1	reviewed	p.T1796P	0.000	108	0%	90	32.2%	0	-	benign(0.06)	tolerated(0.14)	neutral(0.254)	NULL
MOS	4342	genome.wustl.edu	37	8	57026260	57026260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005372.1	-1	validated	p.K94N	1.000	99	0%	68	27.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Kinase_like,HMMPfam_Pkinase
SDR16C5	195814	genome.wustl.edu	37	8	57224747	57224747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138969.2	-1	validated	p.S145*	0.992	171	0.6%	131	31.3%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
PENK	5179	genome.wustl.edu	37	8	57353902	57353902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135690.1	-1	validated	p.E245K	1.000	177	0%	158	24.1%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
IMPAD1	54928	genome.wustl.edu	37	8	57878853	57878853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017813.3	-1	validated	p.K235N	1.000	156	0%	135	31.9%	49	40.8%	benign(0.016)	tolerated(0.36)	neutral(0.021)	HMMPfam_Inositol_P,superfamily_SSF56655
FAM110B	90362	genome.wustl.edu	37	8	59059266	59059266	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147189.2	+1	validated	p.F159	1.000	38	0%	22	36.4%	2	0%	-	-	-	NULL
UBXN2B	137886	genome.wustl.edu	37	8	59358525	59358525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077619.1	+1	validated	p.L244R	0.792	122	0%	96	20.8%	2	50%	possibly_damaging(0.808)	tolerated(0.82)	neutral(0.304)	superfamily_SSF54236
NSMAF	8439	genome.wustl.edu	37	8	59511876	59511876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144772.1	-1	reviewed	p.N531K	0.002	254	0%	221	23.5%	9	33.3%	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
TOX	9760	genome.wustl.edu	37	8	59728228	59728228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014729.2	-1	reviewed	p.S354L	0.998	59	0%	63	69.8%	2	0%	benign(0.076)	tolerated(0.1)	neutral(0.292)	NULL
CA8	767	genome.wustl.edu	37	8	61178561	61178561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004056.4	-1	reviewed	p.E114K	1.000	86	0%	106	31.1%	0	-	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
RAB2A	5862	genome.wustl.edu	37	8	61496785	61496785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002865.1	+1	provisional	p.R69C	1.000	246	0%	214	33.6%	134	40.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD7	55636	genome.wustl.edu	37	8	61654249	61654249	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017780.2	+1	reviewed	p.P86	0.665	78	0%	42	19%	2	100%	-	-	-	NULL
CHD7	55636	genome.wustl.edu	37	8	61654926	61654926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017780.2	+1	reviewed	p.R312Q	1.000	289	0%	240	30.8%	1	0%	possibly_damaging(0.516)	tolerated(0.1)	neutral(0.460)	NULL
CHD7	55636	genome.wustl.edu	37	8	61769212	61769212	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017780.2	+1	reviewed	p.F2458C	1.000	201	0%	187	34.8%	3	33.3%	possibly_damaging(0.913)	deleterious(0.01)	deleterious(0.770)	NULL
CHD7	55636	genome.wustl.edu	37	8	61769220	61769220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017780.2	+1	reviewed	p.L2461F	1.000	200	0%	196	30.1%	3	66.6%	benign(0.323)	tolerated(0.15)	neutral(0.342)	NULL
ASPH	444	genome.wustl.edu	37	8	62475316	62475316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004318.3	-1	reviewed	p.K475R	1.000	376	0%	391	27.4%	3	0%	benign(0.005)	tolerated(0.49)	neutral(0.011)	superfamily_SSF48452
NKAIN3	286183	genome.wustl.edu	37	8	63502316	63502316	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173688.2	+1	provisional	p.I79S	1.000	28	0%	32	18.8%	0	-	possibly_damaging(0.918)	tolerated(0.05)	deleterious(0.714)	HMMPfam_NKAIN
CYP7B1	9420	genome.wustl.edu	37	8	65517309	65517309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004820.3	-1	reviewed	p.R388Q	1.000	146	0%	117	21.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
CYP7B1	9420	genome.wustl.edu	37	8	65537068	65537068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004820.3	-1	reviewed	p.G51C	1.000	486	0%	406	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cytochrome P450
DNAJC5B	85479	genome.wustl.edu	37	8	67012238	67012238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033105.4	+1	validated	p.G191E	0.297	115	0%	76	22.4%	2	0%	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
C8orf46	254778	genome.wustl.edu	37	8	67405914	67405914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152765.3	+1	validated	p.E11K	1.000	61	1.6%	69	24.6%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
MYBL1	4603	genome.wustl.edu	37	8	67509728	67509728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080416.2	-1	validated	p.L117V	1.000	139	0%	103	34%	1	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
PPP1R42	286187	genome.wustl.edu	37	8	67925200	67925200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013626.2	-1	provisional	p.S143Y	1.000	128	0%	143	28.7%	0	-	possibly_damaging(0.885)	deleterious(0.04)	deleterious(0.695)	superfamily_SSF52058
COPS5	10987	genome.wustl.edu	37	8	67974198	67974198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006837.2	-1	reviewed	p.T12A	1.000	105	0%	93	31.2%	68	64.7%	benign(0.023)	deleterious(0.01)	neutral(0.407)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68131779	68131779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006421.3	-1	reviewed	p.F1409L	1.000	159	0%	105	35.2%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68139473	68139473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006421.3	-1	reviewed	p.R1272Q	1.000	235	0%	163	31.9%	10	40%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_DUF1981,superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68140232	68140232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006421.3	-1	reviewed	p.R1186Q	1.000	164	0%	127	35.4%	6	83.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_ARM-type_fold
PREX2	80243	genome.wustl.edu	37	8	69031716	69031716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024870.2	+1	validated	p.K1157N	1.000	231	0%	214	33.6%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SULF1	23213	genome.wustl.edu	37	8	70488407	70488407	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128204.1	+1	validated	p.T125	0.016	103	0%	80	26.3%	32	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
SULF1	23213	genome.wustl.edu	37	8	70498676	70498676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128204.1	+1	validated	p.S166Y	1.000	357	0%	246	29.7%	23	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
SLCO5A1	81796	genome.wustl.edu	37	8	70585331	70585331	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030958.2	-1	reviewed	p.E774*	0.988	166	0%	112	35.7%	0	-	-	-	-	NULL
PRDM14	63978	genome.wustl.edu	37	8	70978615	70978615	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024504.2	-1	validated	p.G346	0.956	119	0%	121	38.8%	0	-	-	-	-	HMMSmart_SET,superfamily_SSF82199
PRDM14	63978	genome.wustl.edu	37	8	70980758	70980758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024504.2	-1	validated	p.S237Y	0.519	58	0%	45	48.9%	0	-	possibly_damaging(0.716)	tolerated(0.21)	neutral(0.303)	NULL
NCOA2	10499	genome.wustl.edu	37	8	71044086	71044086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006540.2	-1	validated	p.E1104K	0.985	38	0%	37	27%	0	-	possibly_damaging(0.937)	tolerated(0.38)	neutral(0.401)	superfamily_Nuc_recept_coact,HMMPfam_Nuc_rec_co-act
NCOA2	10499	genome.wustl.edu	37	8	71071856	71071856	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006540.2	-1	validated	p.I336	1.000	173	0%	113	31.9%	1	0%	-	-	-	HMMSmart_PAC,superfamily_SSF55785
LACTB2	51110	genome.wustl.edu	37	8	71556344	71556344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016027.2	-1	validated	p.S183Y	1.000	434	0%	403	29.3%	6	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Lactamase_B,superfamily_SSF56281
EYA1	2138	genome.wustl.edu	37	8	72211938	72211938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000503.4	-1	reviewed	p.S192P	1.000	233	0%	152	28.9%	0	-	benign(0.102)	tolerated(0.11)	neutral(0.280)	NULL
TRPA1	8989	genome.wustl.edu	37	8	72946605	72946605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007332.2	-1	reviewed	p.N855H	0.998	194	0%	131	26.7%	0	-	possibly_damaging(0.687)	tolerated(0.1)	deleterious(0.532)	HMMPfam_Ion_trans
LOC392232	392232	genome.wustl.edu	37	8	73144670	73144670	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_037363.2	-1	model	NULL	1.000	71	0%	51	25.5%	0	-	-	-	-	-
KCNB2	9312	genome.wustl.edu	37	8	73848500	73848500	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004770.2	+1	reviewed	p.R304*	1.000	127	0%	134	29.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
STAU2	27067	genome.wustl.edu	37	8	74526113	74526113	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014393.2	-1	reviewed	p.E221*	1.000	120	0%	83	18.1%	4	0%	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
UBE2W	55284	genome.wustl.edu	37	8	74742654	74742654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001481.1	-1	validated	p.M34I	1.000	224	0%	194	30.4%	14	28.5%	unknown(0)	tolerated(0.06)	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
LOC100287016	100287016	genome.wustl.edu	37	8	74896809	74896809	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342849.1	+1	model	p.E28*	1.000	99	0%	79	24.1%	3	0%	-	-	-	HMMPfam_Cofilin_ADF,superfamily_Actin depolymerizing proteins
LOC100287016	100287016	genome.wustl.edu	37	8	74896822	74896822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342849.1	+1	model	p.R32I	1.000	118	0%	89	29.2%	2	0%	-	-	-	HMMPfam_Cofilin_ADF,superfamily_Actin depolymerizing proteins
PI15	51050	genome.wustl.edu	37	8	75757429	75757429	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015886.3	+1	reviewed	p.Y153	0.996	200	0%	188	28.2%	1	0%	-	-	-	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
CRISPLD1	83690	genome.wustl.edu	37	8	75937842	75937842	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031461.4	+1	validated	p.R436*	1.000	104	0%	57	22.8%	8	0%	-	-	-	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
HNF4G	3174	genome.wustl.edu	37	8	76471119	76471119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004133.4	+1	validated	p.R314W	0.996	181	0%	145	35.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
ZFHX4	79776	genome.wustl.edu	37	8	77618194	77618194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024721.4	+1	validated	p.S624Y	1.000	87	0%	85	30.6%	0	-	benign(0.189)	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZFHX4	79776	genome.wustl.edu	37	8	77690553	77690553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024721.4	+1	validated	p.S1042L	0.999	239	0%	217	25.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SM00451,HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77767571	77767571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024721.4	+1	validated	p.S2760L	0.998	92	0%	118	22%	0	-	probably_damaging(0.974)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77768353	77768353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024721.4	+1	validated	p.R3021C	1.000	197	0%	171	32.2%	0	-	probably_damaging(1)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77775512	77775512	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024721.4	+1	validated	p.E3143*	1.000	130	0%	178	25.8%	0	-	-	-	-	NULL
PAG1	55824	genome.wustl.edu	37	8	81888912	81888912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018440.3	-1	reviewed	p.A389V	0.997	143	0%	136	31.6%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
PAG1	55824	genome.wustl.edu	37	8	81897466	81897466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018440.3	-1	reviewed	p.A141T	0.000	89	0%	92	25%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
IMPA1	3612	genome.wustl.edu	37	8	82583273	82583273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144878.1	-1	reviewed	p.K215T	0.997	156	0%	105	25.7%	7	28.5%	benign(0.016)	tolerated(0.06)	neutral(0.323)	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
SLC10A5	347051	genome.wustl.edu	37	8	82606085	82606085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010893.2	-1	validated	p.L375V	0.630	188	0%	162	31.5%	1	0%	possibly_damaging(0.895)	tolerated(0.07)	deleterious(0.672)	NULL
SNX16	64089	genome.wustl.edu	37	8	82727616	82727616	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022133.3	-1	reviewed	p.E209*	1.000	113	0%	74	36.5%	3	0%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
RALYL	138046	genome.wustl.edu	37	8	85785562	85785562	+	Missense_Mutation	SNP	G	G	T	rs35443527	byCluster;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100391.1	+1	validated	p.Q218H	1.000	37	0%	30	20%	0	-	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
LRRCC1	85444	genome.wustl.edu	37	8	86050680	86050680	+	Missense_Mutation	SNP	C	C	T	rs184616940	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033402.4	+1	validated	p.A937V	0.999	115	0%	95	23.2%	2	50%	benign(0.108)	tolerated(0.06)	neutral(0.331)	NULL
E2F5	1875	genome.wustl.edu	37	8	86121608	86121608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001951.3	+1	reviewed	p.A283T	0.000	89	0%	60	33.3%	22	63.6%	benign(0.032)	tolerated(0.66)	neutral(0.004)	NULL
CA1	759	genome.wustl.edu	37	8	86250587	86250587	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128829.2	-1	reviewed	p.T43	0.073	341	0%	272	30.9%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
PSKH2	85481	genome.wustl.edu	37	8	87076215	87076215	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033126.1	-1	provisional	p.G277	1.000	91	0%	122	31.1%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PSKH2	85481	genome.wustl.edu	37	8	87076588	87076588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033126.1	-1	provisional	p.G153E	1.000	153	0%	181	38.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ATP6V0D2	245972	genome.wustl.edu	37	8	87151851	87151851	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152565.1	+1	validated	p.I156	0.799	146	0%	142	31.7%	0	-	-	-	-	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
ATP6V0D2	245972	genome.wustl.edu	37	8	87165153	87165153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152565.1	+1	validated	p.C334R	1.000	158	0%	194	37.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
SLC7A13	157724	genome.wustl.edu	37	8	87226642	87226642	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138817.2	-1	validated	p.*471Y	0.000	148	0%	71	29.6%	0	-	-	-	-	NULL
WWP1	11059	genome.wustl.edu	37	8	87410585	87410585	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007013.3	+1	validated	p.E117*	1.000	186	0%	160	22.5%	2	0%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
WWP1	11059	genome.wustl.edu	37	8	87473500	87473500	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007013.3	+1	validated	p.F849	1.000	168	0%	142	27.5%	13	76.9%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
CPNE3	8895	genome.wustl.edu	37	8	87568431	87568431	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003909.3	+1	reviewed	p.I452	1.000	123	0%	129	25.6%	28	57.1%	-	-	-	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
CNBD1	168975	genome.wustl.edu	37	8	88218303	88218303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173538.2	+1	provisional	p.D172Y	0.000	92	0%	55	32.7%	0	-	probably_damaging(0.981)	tolerated(0.14)	deleterious(0.675)	superfamily_cNMP_binding
CNBD1	168975	genome.wustl.edu	37	8	88365915	88365915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173538.2	+1	provisional	p.F402V	1.000	114	0%	78	30.8%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_cNMP_binding,superfamily_cNMP_binding
OSGIN2	734	genome.wustl.edu	37	8	90926893	90926893	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001126111.1	+1	validated	p.S149	0.913	363	0%	334	29.6%	14	57.1%	-	-	-	NULL
OSGIN2	734	genome.wustl.edu	37	8	90936995	90936995	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001126111.1	+1	validated	p.F295	0.997	243	0%	204	32.4%	16	75%	-	-	-	superfamily_FAD/NAD(P)-binding domain
TMEM64	169200	genome.wustl.edu	37	8	91643826	91643826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008495.3	-1	validated	p.V302A	1.000	359	0.3%	300	25%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC26A7	115111	genome.wustl.edu	37	8	92378849	92378849	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_134266.1	+1	reviewed	p.P510	0.997	251	0%	200	28.5%	1	0%	-	-	-	HMMPfam_STAS,superfamily_STAS
RUNX1T1	862	genome.wustl.edu	37	8	92999128	92999128	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175634.1	-1	reviewed	p.K355T	1.000	259	0%	205	22%	0	-	probably_damaging(0.965)	deleterious(0.05)	deleterious(0.752)	HMMPfam_NHR2
RBM12B	389677	genome.wustl.edu	37	8	94746312	94746312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203390.2	-1	validated	p.P776L	0.042	83	0%	74	24.3%	4	50%	benign(0.005)	deleterious(0.03)	neutral(0.364)	NULL
RBM12B	389677	genome.wustl.edu	37	8	94747803	94747803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203390.2	-1	validated	p.R279H	1.000	185	0%	169	28.4%	2	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_RNA-binding domain RBD
PDP1	54704	genome.wustl.edu	37	8	94935367	94935367	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018444.3	+1	reviewed	p.W360*	1.000	128	0%	153	25.5%	6	50%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
CDH17	1015	genome.wustl.edu	37	8	95143137	95143137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144663.1	-1	reviewed	p.R751W	0.000	226	0%	218	32.1%	1	0%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Cadherin,superfamily_Cadherin-like
CDH17	1015	genome.wustl.edu	37	8	95182731	95182731	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144663.1	-1	reviewed	p.L320	0.019	279	0.4%	221	30.8%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
RAD54B	25788	genome.wustl.edu	37	8	95399358	95399358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012415.2	-1	reviewed	p.K613N	0.665	165	0%	157	28.7%	2	0%	benign(0.03)	tolerated(0.41)	neutral(0.017)	NULL
DPY19L4	286148	genome.wustl.edu	37	8	95780628	95780628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181787.2	+1	validated	p.F394S	1.000	133	0%	101	26.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2211
C8orf38	137682	genome.wustl.edu	37	8	96070133	96070133	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152416.2	+1	reviewed	p.L324V	0.558	55	0%	68	30.9%	4	25%	benign(0.082)	deleterious(0.01)	neutral(0.412)	HMMPfam_SQS_PSY
UQCRB	7381	genome.wustl.edu	37	8	97243289	97243289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006294.3	-1	reviewed	p.K110N	1.000	275	0%	235	28.5%	392	27.2%	unknown(0)	deleterious(0)	-	superfamily_14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
MTERFD1	51001	genome.wustl.edu	37	8	97251839	97251839	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015942.3	-1	provisional	p.D378	0.944	41	0%	38	21.1%	9	33.3%	-	-	-	HMMPfam_mTERF
MTERFD1	51001	genome.wustl.edu	37	8	97256207	97256207	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015942.3	-1	provisional	p.T333	0.011	95	0%	90	36.7%	17	47%	-	-	-	HMMPfam_mTERF,HMMSmart_SM00733
PTDSS1	9791	genome.wustl.edu	37	8	97274424	97274424	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014754.1	+1	provisional	p.S52	1.000	54	0%	78	23.1%	45	0%	-	-	-	NULL
CPQ	10404	genome.wustl.edu	37	8	97892115	97892115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016134.2	+1	provisional	p.R244K	1.000	366	0%	288	29.9%	16	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SSF53187
MATN2	4147	genome.wustl.edu	37	8	99045827	99045827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002380.3	+1	reviewed	p.E919K	1.000	31	0%	20	45%	29	37.9%	benign(0.35)	tolerated(0.14)	neutral(0.360)	HMMPfam_Matrilin_ccoil
NIPAL2	79815	genome.wustl.edu	37	8	99266260	99266260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024759.1	-1	provisional	p.S64F	1.000	91	0%	62	30.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF803,superfamily_SSF103481
OSR2	116039	genome.wustl.edu	37	8	99961736	99961736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142462.1	+1	validated	p.N186D	1.000	202	0%	142	23.9%	13	38.4%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
VPS13B	157680	genome.wustl.edu	37	8	100133620	100133620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017890.3	+1	reviewed	p.D385N	1.000	201	0%	260	29.6%	0	-	benign(0.249)	tolerated(0.27)	neutral(0.059)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100147344	100147344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017890.3	+1	reviewed	p.E468D	0.993	168	0%	124	27.4%	1	100%	benign(0.01)	tolerated(0.63)	neutral(0.004)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100147851	100147851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017890.3	+1	reviewed	p.N485D	1.000	131	0%	103	37.9%	0	-	benign(0.008)	tolerated(0.71)	neutral(0.002)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100286459	100286459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017890.3	+1	reviewed	p.E850A	1.000	270	0%	214	37.4%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100654663	100654663	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017890.3	+1	reviewed	p.R1974*	1.000	120	0%	126	27%	0	-	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100711888	100711888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017890.3	+1	reviewed	p.S2086F	0.029	282	0%	233	33.5%	0	-	benign(0.052)	tolerated(0.13)	neutral(0.256)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100830024	100830024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017890.3	+1	reviewed	p.V2810A	1.000	159	0%	164	39%	3	100%	possibly_damaging(0.44)	deleterious(0.04)	deleterious(0.492)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100830686	100830686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017890.3	+1	reviewed	p.S2815F	1.000	177	0%	173	26.6%	4	75%	benign(0.373)	deleterious(0.04)	neutral(0.468)	NULL
FBXO43	286151	genome.wustl.edu	37	8	101146049	101146049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029860.2	-1	validated	p.R703Q	1.000	168	0%	125	32%	0	-	possibly_damaging(0.856)	deleterious(0.04)	deleterious(0.679)	NULL
FBXO43	286151	genome.wustl.edu	37	8	101146202	101146202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029860.2	-1	validated	p.Y652S	0.968	173	0%	143	27.3%	1	0%	benign(0.013)	tolerated(0.27)	neutral(0.034)	HMMPfam_IBR,HMMSmart_IBR,superfamily_SSF57850
FBXO43	286151	genome.wustl.edu	37	8	101153360	101153360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029860.2	-1	validated	p.K374N	0.003	177	0%	161	28.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SPAG1	6674	genome.wustl.edu	37	8	101174635	101174635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003114.3	+1	reviewed	p.L43I	0.977	54	0%	38	31.6%	0	-	benign(0.191)	tolerated(0.44)	neutral(0.030)	NULL
RNF19A	25897	genome.wustl.edu	37	8	101287222	101287222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015435.3	-1	reviewed	p.R281H	1.000	90	0%	79	32.9%	9	44.4%	benign(0.156)	tolerated(0.14)	neutral(0.264)	NULL
SNX31	169166	genome.wustl.edu	37	8	101642561	101642561	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152628.3	-1	validated	p.A105	0.008	76	0%	95	31.6%	0	-	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
AZIN1	51582	genome.wustl.edu	37	8	103851101	103851101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015878.4	-1	reviewed	p.N107S	1.000	95	0%	98	33.7%	68	39.7%	possibly_damaging(0.637)	deleterious(0.04)	deleterious(0.572)	HMMPfam_Orn_Arg_deC_N,superfamily_SSF51419
ATP6V1C1	528	genome.wustl.edu	37	8	104076985	104076985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001695.4	+1	reviewed	p.F291C	1.000	92	0%	69	31.9%	27	37%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-ATPase_C
BAALC	79870	genome.wustl.edu	37	8	104240250	104240250	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024812.2	+1	reviewed	p.E121*	1.000	105	0%	94	22.3%	2	0%	-	-	-	NULL
FZD6	8323	genome.wustl.edu	37	8	104337581	104337581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003506.3	+1	reviewed	p.R416Q	1.000	373	0.5%	333	36%	28	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Frizzled
DCAF13	25879	genome.wustl.edu	37	8	104432548	104432548	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015420.6	+1	validated	p.R195	0.988	62	0%	62	33.9%	37	40.5%	-	-	-	superfamily_WD40_like
DCAF13	25879	genome.wustl.edu	37	8	104438371	104438371	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015420.6	+1	validated	p.K308Q	1.000	71	0%	57	22.8%	56	48.2%	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	superfamily_WD40_like
RIMS2	9699	genome.wustl.edu	37	8	104897638	104897638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100117.1	+1	validated	p.S271P	1.000	137	0%	162	34%	3	66.6%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
RIMS2	9699	genome.wustl.edu	37	8	104922424	104922424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100117.1	+1	validated	p.S563P	1.000	161	0.6%	115	35.7%	0	-	possibly_damaging(0.561)	tolerated(0.29)	neutral(0.221)	superfamily_PDZ domain-like
RIMS2	9699	genome.wustl.edu	37	8	104924317	104924317	+	Missense_Mutation	SNP	C	C	T	rs141316868	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100117.1	+1	validated	p.R577C	1.000	122	0%	105	30.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PDZ domain-like
ZFPM2	23414	genome.wustl.edu	37	8	106815540	106815540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012082.3	+1	reviewed	p.S1077L	0.996	82	0%	67	43.3%	1	0%	possibly_damaging(0.602)	tolerated(0.17)	neutral(0.267)	NULL
OXR1	55074	genome.wustl.edu	37	8	107695484	107695484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018002.2	+1	validated	p.E121K	1.000	135	0%	108	34.3%	6	66.6%	probably_damaging(0.974)	tolerated(0.1)	deleterious(0.702)	HMMSmart_SM00257,HMMPfam_LysM,superfamily_LysM domain
OXR1	55074	genome.wustl.edu	37	8	107751790	107751790	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018002.2	+1	validated	p.L687	0.993	89	0%	78	37.2%	7	85.7%	-	-	-	HMMSmart_SM00584
RSPO2	340419	genome.wustl.edu	37	8	108913336	108913336	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178565.4	-1	validated	p.S233	0.771	163	0%	160	33.1%	0	-	-	-	-	NULL
EIF3E	3646	genome.wustl.edu	37	8	109215291	109215291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001568.2	-1	validated	p.K407T	1.000	248	0%	211	38.9%	369	0%	unknown(0)	tolerated(0.09)	-	HMMSmart_SM00088
EIF3E	3646	genome.wustl.edu	37	8	109240530	109240530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001568.2	-1	validated	p.D230N	1.000	319	0%	234	30.3%	281	0%	benign(0.19)	tolerated(0.25)	neutral(0.055)	NULL
TTC35	9694	genome.wustl.edu	37	8	109482082	109482082	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014673.3	+1	provisional	p.R131*	1.000	150	0%	139	13.7%	21	0%	-	-	-	superfamily_Prenyl_trans
TRHR	7201	genome.wustl.edu	37	8	110100067	110100067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003301.4	+1	reviewed	p.I109S	1.000	384	0%	349	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
PKHD1L1	93035	genome.wustl.edu	37	8	110376821	110376821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177531.4	+1	validated	p.Y40C	1.000	61	0%	49	24.5%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PKHD1L1	93035	genome.wustl.edu	37	8	110424602	110424602	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177531.4	+1	validated	p.R732	0.121	114	0%	96	35.4%	0	-	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110468548	110468548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177531.4	+1	validated	p.R2311I	0.004	54	0%	33	36.4%	0	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110491815	110491815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177531.4	+1	validated	p.R3042Q	0.004	28	0%	26	26.9%	0	-	benign(0.003)	tolerated(0.58)	neutral(0.005)	HMMPfam_G8
PKHD1L1	93035	genome.wustl.edu	37	8	110523128	110523128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177531.4	+1	validated	p.L3840I	1.000	404	0%	436	11.9%	1	0%	possibly_damaging(0.858)	tolerated(0.17)	neutral(0.390)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110530660	110530660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177531.4	+1	validated	p.R3985M	0.979	169	0%	154	37%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110539017	110539017	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177531.4	+1	validated	p.K4163N	0.997	16	0%	19	42.1%	0	-	benign(0.004)	tolerated(0.16)	neutral(0.059)	NULL
EBAG9	9166	genome.wustl.edu	37	8	110575704	110575704	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000276658	+1	known	p.Q200H	0.000	470	0%	336	27.4%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
KCNV1	27012	genome.wustl.edu	37	8	110984758	110984758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014379.2	-1	reviewed	p.Q240H	0.986	102	0%	60	31.7%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	superfamily_Voltage-gated potassium channels
CSMD3	114788	genome.wustl.edu	37	8	113243817	113243817	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.F3595L	1.000	361	0%	297	27.3%	0	-	possibly_damaging(0.756)	tolerated(0.26)	neutral(0.313)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113317093	113317093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.R2708Q	1.000	115	0%	79	22.8%	0	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113323359	113323359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.G2578E	1.000	181	0%	120	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113529325	113529325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.R1565I	1.000	217	0.5%	198	32.3%	0	-	possibly_damaging(0.918)	tolerated(0.1)	deleterious(0.655)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113599465	113599465	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	e23-1	1.000	134	0%	82	26.8%	0	-	-	-	-	-
CSMD3	114788	genome.wustl.edu	37	8	113649123	113649123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.R1213Q	1.000	130	0.8%	127	22%	0	-	probably_damaging(0.954)	tolerated(0.21)	neutral(0.442)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113697858	113697858	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.S753	1.000	298	0%	221	29.9%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113702155	113702155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.E699D	1.000	344	0.3%	264	34.1%	0	-	unknown(0)	tolerated(0.43)	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113933946	113933946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.D515Y	1.000	296	0%	245	29%	0	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113988224	113988224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.R395Q	1.000	96	0%	75	26.7%	0	-	unknown(0)	deleterious(0)	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	114186126	114186126	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198123.1	-1	validated	p.C178	1.000	148	0%	80	43.8%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
TRPS1	7227	genome.wustl.edu	37	8	116599311	116599311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014112.2	-1	reviewed	p.G873R	0.992	134	0%	108	29.6%	2	0%	benign(0.383)	deleterious(0)	deleterious(0.567)	NULL
TRPS1	7227	genome.wustl.edu	37	8	116599694	116599694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014112.2	-1	reviewed	p.A745D	0.441	271	0%	239	27.2%	8	25%	benign(0.116)	deleterious(0)	neutral(0.454)	NULL
TRPS1	7227	genome.wustl.edu	37	8	116631583	116631583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014112.2	-1	reviewed	p.D248N	1.000	244	0%	157	27.4%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_ZnF_C2H2
UTP23	84294	genome.wustl.edu	37	8	117783964	117783964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032334.2	+1	validated	p.K211N	1.000	226	0%	214	10.3%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EXT1	2131	genome.wustl.edu	37	8	119122996	119122996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000127.2	-1	reviewed	p.K97T	1.000	100	0%	71	31%	23	30.4%	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
ENPP2	5168	genome.wustl.edu	37	8	120575171	120575171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006209.3	-1	reviewed	p.D835N	1.000	124	0%	149	29.5%	22	0%	possibly_damaging(0.846)	tolerated(0.47)	neutral(0.336)	HMMPfam_Endonuclease_NS,HMMSmart_SM00477,superfamily_His-Me finger endonucleases
ENPP2	5168	genome.wustl.edu	37	8	120580414	120580414	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006209.3	-1	reviewed	e23+1	1.000	236	0%	193	31.6%	0	-	-	-	-	-
TAF2	6873	genome.wustl.edu	37	8	120801091	120801091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003184.3	-1	reviewed	p.R541Q	1.000	312	0%	201	26.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
TAF2	6873	genome.wustl.edu	37	8	120809949	120809949	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003184.3	-1	reviewed	p.D310	1.000	128	0%	123	30.9%	6	16.6%	-	-	-	HMMPfam_Peptidase_M1,superfamily_SSF55486
DSCC1	79075	genome.wustl.edu	37	8	120862688	120862688	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024094.2	-1	validated	p.K140	1.000	149	0%	156	33.3%	6	33.3%	-	-	-	HMMPfam_DUF2036
COL14A1	7373	genome.wustl.edu	37	8	121279119	121279119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021110.1	+1	validated	p.E1024*	1.000	280	0%	276	31.5%	3	0%	-	-	-	NULL
ZHX2	22882	genome.wustl.edu	37	8	123964601	123964601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014943.3	+1	reviewed	p.F284C	1.000	132	0%	152	28.3%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_HOX,superfamily_Homeodomain_like
WDR67	93594	genome.wustl.edu	37	8	124132355	124132355	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145647.3	+1	validated	p.L499	0.653	47	0%	46	28.3%	3	100%	-	-	-	NULL
ZHX1	11244	genome.wustl.edu	37	8	124265893	124265893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017926.1	-1	reviewed	p.R765I	0.985	329	0.3%	334	31.4%	4	50%	probably_damaging(0.982)	tolerated(0.16)	deleterious(0.486)	superfamily_Homeodomain_like
ATAD2	29028	genome.wustl.edu	37	8	124351651	124351651	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014109.3	-1	reviewed	p.I918M	1.000	95	0%	78	24.4%	6	33.3%	benign(0.381)	deleterious(0.03)	deleterious(0.486)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124371482	124371482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014109.3	-1	reviewed	p.K454T	1.000	278	0%	252	31.3%	3	33.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124383979	124383979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014109.3	-1	reviewed	p.R156Q	1.000	97	0%	103	35%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KLHL38	340359	genome.wustl.edu	37	8	124658211	124658211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081675.2	-1	validated	p.A505V	0.999	222	0%	248	27.4%	0	-	probably_damaging(0.974)	tolerated(0.16)	deleterious(0.475)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
FER1L6	654463	genome.wustl.edu	37	8	124992833	124992833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039112.2	+1	validated	p.L398V	0.133	299	0%	274	28.5%	0	-	probably_damaging(0.956)	tolerated(0.09)	deleterious(0.696)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FER1L6	654463	genome.wustl.edu	37	8	125072925	125072925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039112.2	+1	validated	p.S1041N	0.000	144	0%	137	26.3%	0	-	benign(0.001)	tolerated(0.74)	neutral(0.002)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TRMT12	55039	genome.wustl.edu	37	8	125464044	125464044	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017956.3	+1	validated	p.G292	0.999	180	0%	188	30.3%	4	25%	-	-	-	HMMPfam_Met_10,superfamily_SSF53335
RNF139	11236	genome.wustl.edu	37	8	125498540	125498540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007218.3	+1	reviewed	p.R217Q	1.000	442	0.2%	402	27.1%	21	57.1%	benign(0.343)	tolerated(0.44)	neutral(0.120)	NULL
RNF139	11236	genome.wustl.edu	37	8	125499376	125499376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007218.3	+1	reviewed	p.R496W	1.000	297	0%	278	26.6%	35	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTSS1	9788	genome.wustl.edu	37	8	125577954	125577954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014751.4	-1	validated	p.T258M	1.000	110	0.9%	105	33.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF572	137209	genome.wustl.edu	37	8	125988899	125988899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152412.2	+1	validated	p.R130K	1.000	274	0%	270	30.4%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF57667
ZNF572	137209	genome.wustl.edu	37	8	125989133	125989133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152412.2	+1	validated	p.R208I	1.000	270	0%	258	30.2%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF572	137209	genome.wustl.edu	37	8	125989430	125989430	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152412.2	+1	validated	p.K307T	1.000	243	0%	217	30.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KIAA0196	9897	genome.wustl.edu	37	8	126069007	126069007	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014846.3	-1	reviewed	p.K643T	1.000	240	0%	225	33.8%	19	42.1%	benign(0.006)	tolerated(0.57)	neutral(0.006)	HMMPfam_Strumpellin
GSDMC	56169	genome.wustl.edu	37	8	130772820	130772820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031415.2	-1	validated	p.D231G	0.000	398	0.3%	331	24.8%	0	-	probably_damaging(0.988)	tolerated(0.64)	neutral(0.441)	HMMPfam_Gasdermin
ADCY8	114	genome.wustl.edu	37	8	131797663	131797663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001115.2	-1	reviewed	p.Y1040C	1.000	183	0%	182	11.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ADCY8	114	genome.wustl.edu	37	8	131861935	131861935	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001115.2	-1	reviewed	p.C775	1.000	117	0%	119	32.8%	0	-	-	-	-	NULL
ADCY8	114	genome.wustl.edu	37	8	131922053	131922053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001115.2	-1	reviewed	p.S514L	1.000	246	0%	247	30.4%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
EFR3A	23167	genome.wustl.edu	37	8	132957061	132957061	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015137.3	+1	validated	p.R53*	1.000	82	0%	81	40.7%	1	0%	-	-	-	superfamily_ARM repeat
EFR3A	23167	genome.wustl.edu	37	8	132958775	132958775	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015137.3	+1	validated	p.A87	0.986	91	0%	80	31.2%	7	14.2%	-	-	-	superfamily_ARM repeat
OC90	729330	genome.wustl.edu	37	8	133044137	133044137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080399.2	-1	validated	p.D341G	0.283	268	0%	217	30.9%	0	-	benign(0.097)	tolerated(0.17)	neutral(0.067)	HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2
OC90	729330	genome.wustl.edu	37	8	133049696	133049696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080399.2	-1	validated	p.L223R	0.002	42	0%	26	34.6%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133141973	133141973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004519.2	-1	reviewed	p.N719H	0.025	64	0%	71	28.2%	0	-	benign(0.159)	tolerated(0.07)	neutral(0.333)	NULL
TMEM71	137835	genome.wustl.edu	37	8	133726262	133726262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144649.2	-1	validated	p.F265C	0.967	143	0%	109	26.6%	0	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133811066	133811066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016018.4	+1	validated	p.R130I	1.000	55	0%	49	26.5%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	HMMSmart_SM00333,HMMSmart_SM00743,superfamily_Tudor/PWWP/MBT
TG	7038	genome.wustl.edu	37	8	133899012	133899012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003235.4	+1	reviewed	p.K465N	0.984	334	0%	283	33.6%	0	-	possibly_damaging(0.899)	deleterious(0)	deleterious(0.800)	NULL
TG	7038	genome.wustl.edu	37	8	133899196	133899196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003235.4	+1	reviewed	p.D527N	0.004	234	0%	196	31.1%	0	-	benign(0.018)	tolerated(0.1)	neutral(0.287)	NULL
TG	7038	genome.wustl.edu	37	8	133941364	133941364	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003235.4	+1	reviewed	p.F1581	0.188	222	0%	177	26.6%	0	-	-	-	-	NULL
TG	7038	genome.wustl.edu	37	8	133981744	133981744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003235.4	+1	reviewed	p.P1969S	1.000	242	0%	186	29.6%	0	-	probably_damaging(0.994)	tolerated(0.25)	deleterious(0.489)	NULL
TG	7038	genome.wustl.edu	37	8	134042143	134042143	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003235.4	+1	reviewed	p.G2372*	0.001	110	0%	91	34.1%	1	0%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
TG	7038	genome.wustl.edu	37	8	134108593	134108593	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003235.4	+1	reviewed	p.L2516	0.994	220	0%	236	26.7%	1	0%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
ST3GAL1	6482	genome.wustl.edu	37	8	134477152	134477152	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003033.3	-1	reviewed	p.K184	0.985	160	0%	129	38%	2	0%	-	-	-	HMMPfam_Glyco_transf_29
ZFAT	57623	genome.wustl.edu	37	8	135622725	135622725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020863.3	-1	reviewed	p.E208K	0.998	100	0%	71	28.2%	2	0%	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	NULL
KHDRBS3	10656	genome.wustl.edu	37	8	136533532	136533532	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006558.1	+1	provisional	p.D47	1.000	304	0%	285	28.8%	8	12.5%	-	-	-	NULL
KHDRBS3	10656	genome.wustl.edu	37	8	136561120	136561120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006558.1	+1	provisional	p.E150K	1.000	155	0%	105	22.9%	5	60%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
KHDRBS3	10656	genome.wustl.edu	37	8	136657360	136657360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006558.1	+1	provisional	p.G317R	1.000	234	0%	199	36.7%	3	0%	benign(0.186)	deleterious(0.04)	neutral(0.366)	NULL
COL22A1	169044	genome.wustl.edu	37	8	139737634	139737634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152888.1	-1	validated	p.S730Y	1.000	85	0%	82	36.6%	0	-	unknown(0)	tolerated(0.08)	-	HMMPfam_Collagen
PTK2	5747	genome.wustl.edu	37	8	141900789	141900789	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005607.3	-1	reviewed	p.S38	0.002	212	0.5%	188	26.1%	8	25%	-	-	-	NULL
FLJ43860	389690	genome.wustl.edu	37	8	142446153	142446153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207414.2	-1	validated	p.R1139W	0.017	5	0.000	14	0.357	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
BAI1	575	genome.wustl.edu	37	8	143562691	143562691	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001702.2	+1	reviewed	p.V635	0.995	50	0%	49	26.5%	4	100%	-	-	-	HMMPfam_HRM,HMMSmart_SM00008
CYP11B1	1584	genome.wustl.edu	37	8	143957179	143957179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000497.3	-1	reviewed	p.K357T	0.014	101	0%	68	27.9%	0	-	benign(0.015)	tolerated(0.2)	neutral(0.050)	HMMPfam_p450,superfamily_Cytochrome_P450
PARP10	84875	genome.wustl.edu	37	8	145057102	145057102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032789.3	-1	validated	p.R852C	0.008	80	1.3%	41	39%	43	32.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PARP,superfamily_SSF56399
ZNF251	90987	genome.wustl.edu	37	8	145947939	145947939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138367.1	-1	validated	p.R369I	0.999	193	0%	198	27.3%	6	16.6%	probably_damaging(0.994)	tolerated(0.16)	deleterious(0.512)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF16	7564	genome.wustl.edu	37	8	146157410	146157410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029976.2	-1	reviewed	p.R255C	0.035	434	0%	397	30.2%	3	33.3%	benign(0.279)	deleterious(0)	deleterious(0.475)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF252	286101	genome.wustl.edu	37	8	146202331	146202331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000355436	-1	known	p.E506A	0.302	24	0%	33	24.2%	2	0%	probably_damaging(0.976)	tolerated(0.17)	deleterious(0.477)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C9orf66	157983	genome.wustl.edu	37	9	214923	214923	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152569.2	-1	validated	p.G158	0.000	8	0.000	12	0.667	0	-	-	-	-	NULL
DOCK8	81704	genome.wustl.edu	37	9	304652	304652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203447.3	+1	reviewed	p.P91L	1.000	431	0%	377	25.5%	0	-	benign(0.026)	tolerated(0.6)	neutral(0.005)	NULL
DOCK8	81704	genome.wustl.edu	37	9	405083	405083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000382331	+1	known	p.E436K	0.057	32	0%	60	38.3%	0	-	benign(0.017)	-	-	NULL
DOCK8	81704	genome.wustl.edu	37	9	414934	414934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203447.3	+1	reviewed	p.Q1160R	1.000	143	0%	217	34.6%	2	0%	benign(0.118)	tolerated(0.58)	neutral(0.014)	NULL
DOCK8	81704	genome.wustl.edu	37	9	420538	420538	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203447.3	+1	reviewed	p.R1258	0.995	88	0%	106	23.6%	0	-	-	-	-	NULL
DMRT1	1761	genome.wustl.edu	37	9	894133	894133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021951.2	+1	reviewed	p.K254E	1.000	123	0%	117	34.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2054700	2054700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003070.3	+1	reviewed	p.R384W	0.997	117	0%	128	28.1%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2058342	2058342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003070.3	+1	reviewed	p.R467W	1.000	153	0%	151	26.5%	1	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_HSA,HMMSmart_SM00573
VLDLR	7436	genome.wustl.edu	37	9	2639887	2639887	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003383.3	+1	reviewed	p.F77	0.998	175	0%	170	35.3%	12	58.3%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module,HMMSmart_SM00181
GLIS3	169792	genome.wustl.edu	37	9	4125916	4125916	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042413.1	-1	reviewed	p.C138	1.000	140	0%	147	27.2%	4	0%	-	-	-	NULL
SLC1A1	6505	genome.wustl.edu	37	9	4567711	4567711	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004170.5	+1	reviewed	p.E176*	0.006	118	0%	102	16.7%	0	-	-	-	-	HMMPfam_SDF
CDC37L1	55664	genome.wustl.edu	37	9	4697108	4697108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017913.2	+1	validated	p.R174Q	1.000	97	0%	109	14.7%	10	30%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_CDC37_M,superfamily_SSF101391
INSL6	11172	genome.wustl.edu	37	9	5163940	5163940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007179.2	-1	reviewed	p.R205S	0.000	190	0%	112	26.8%	0	-	benign(0.166)	tolerated(0.45)	neutral(0.027)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5968511	5968511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017969.2	-1	validated	p.R574C	0.409	224	0.9%	199	32.2%	3	66.6%	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5968973	5968973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017969.2	-1	validated	p.E420K	1.000	62	0%	55	30.9%	1	0%	possibly_damaging(0.903)	deleterious(0.04)	deleterious(0.707)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6013016	6013016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012416.2	-1	validated	p.K864N	1.000	140	0%	116	36.2%	6	50%	benign(0.009)	tolerated(0.46)	neutral(0.013)	superfamily_ARM-type_fold
RANBP6	26953	genome.wustl.edu	37	9	6014080	6014080	+	Missense_Mutation	SNP	G	G	A	rs184802439	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012416.2	-1	validated	p.R510W	1.000	87	0%	88	25%	1	0%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	superfamily_ARM-type_fold
UHRF2	115426	genome.wustl.edu	37	9	6482096	6482096	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152896.1	+1	reviewed	p.V463	0.999	194	0%	193	25.9%	6	0%	-	-	-	HMMPfam_YDG_SRA,HMMSmart_SM00466
LOC100287684	100287684	genome.wustl.edu	37	9	6835533	6835533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342904.1	-1	model	p.L10I	1.000	154	0%	99	15.2%	2	0%	-	-	-	NULL
KDM4C	23081	genome.wustl.edu	37	9	7013975	7013975	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015061.3	+1	reviewed	p.A719G	0.993	512	0%	365	30.7%	4	100%	benign(0.054)	tolerated(0.28)	neutral(0.035)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger
PTPRD	5789	genome.wustl.edu	37	9	8317921	8317921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002839.3	-1	reviewed	p.R1898C	1.000	239	0%	248	31.5%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRD	5789	genome.wustl.edu	37	9	8319913	8319913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002839.3	-1	reviewed	p.R1863I	1.000	131	0.8%	150	42%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRD	5789	genome.wustl.edu	37	9	8404586	8404586	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002839.3	-1	reviewed	p.A1387	0.989	107	0%	86	19.8%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRD	5789	genome.wustl.edu	37	9	8633326	8633326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002839.3	-1	reviewed	p.V115I	1.000	225	0%	197	26.9%	0	-	possibly_damaging(0.516)	tolerated(0.22)	neutral(0.215)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MPDZ	8777	genome.wustl.edu	37	9	13113021	13113021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003829.3	-1	validated	p.E1835K	1.000	38	0%	31	16.1%	1	0%	probably_damaging(0.998)	tolerated(0.32)	deleterious(0.498)	HMMPfam_PDZ,superfamily_PDZ domain-like
MPDZ	8777	genome.wustl.edu	37	9	13125217	13125217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003829.3	-1	validated	p.R1602Q	0.644	146	0%	135	40%	1	100%	benign(0.204)	tolerated(0.58)	neutral(0.025)	NULL
MPDZ	8777	genome.wustl.edu	37	9	13206030	13206030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003829.3	-1	validated	p.Q453H	0.706	77	0%	65	24.6%	0	-	possibly_damaging(0.613)	tolerated(0.06)	deleterious(0.535)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
FREM1	158326	genome.wustl.edu	37	9	14759789	14759789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144966.5	-1	reviewed	p.S1772L	0.989	227	0%	235	29.4%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	PatternScan_SPASE_I_1
FREM1	158326	genome.wustl.edu	37	9	14774072	14774072	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000427623	-1	known	p.I29	0.000	404	0%	315	30.2%	0	-	-	-	-	NULL
FREM1	158326	genome.wustl.edu	37	9	14805012	14805012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144966.5	-1	reviewed	p.S1138Y	0.035	99	0%	103	26.2%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
FREM1	158326	genome.wustl.edu	37	9	14812939	14812939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144966.5	-1	reviewed	p.D922N	1.000	491	0%	460	27%	1	0%	benign(0.006)	tolerated(0.22)	neutral(0.042)	NULL
TTC39B	158219	genome.wustl.edu	37	9	15214170	15214170	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152574.2	-1	validated	p.K84T	0.994	134	0%	107	31.8%	7	28.5%	possibly_damaging(0.946)	deleterious(0.02)	deleterious(0.773)	HMMPfam_Deme6
SNAPC3	6619	genome.wustl.edu	37	9	15453116	15453116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039697.1	+1	validated	p.F298S	1.000	163	0%	150	24.7%	33	42.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PSIP1	11168	genome.wustl.edu	37	9	15471302	15471302	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380715	-1	known	p.L329	1.000	89	0%	55	29.1%	1	0%	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15744484	15744484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173550.2	+1	predicted	p.L755I	1.000	374	0%	298	31.2%	0	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15779036	15779036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173550.2	+1	predicted	p.R990H	0.998	117	0%	79	39.2%	3	0%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
BNC2	54796	genome.wustl.edu	37	9	16419043	16419043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017637.5	-1	validated	p.R1082W	1.000	168	0.6%	146	19.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355
BNC2	54796	genome.wustl.edu	37	9	16419599	16419599	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017637.5	-1	validated	p.L896	1.000	145	0%	149	31.5%	1	0%	-	-	-	NULL
BNC2	54796	genome.wustl.edu	37	9	16436043	16436043	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017637.5	-1	validated	p.E717*	1.000	196	0%	141	24.1%	2	0%	-	-	-	NULL
BNC2	54796	genome.wustl.edu	37	9	16436658	16436658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017637.5	-1	validated	p.R512W	1.000	111	0%	128	34.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CNTLN	54875	genome.wustl.edu	37	9	17309143	17309143	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017738.2	+1	validated	p.L412	0.996	101	0%	53	28.3%	0	-	-	-	-	NULL
CNTLN	54875	genome.wustl.edu	37	9	17340832	17340832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017738.2	+1	validated	p.E551A	1.000	142	0%	109	22.9%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
ADAMTSL1	92949	genome.wustl.edu	37	9	18533279	18533279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040272.4	+1	validated	p.C76R	0.997	83	0%	84	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTSL1	92949	genome.wustl.edu	37	9	18661948	18661948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040272.4	+1	validated	p.S321L	1.000	198	0%	145	33.1%	0	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTSL1	92949	genome.wustl.edu	37	9	18721589	18721589	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000276935	+1	known	p.R432K	0.988	151	0%	108	13%	1	0%	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTSL1	92949	genome.wustl.edu	37	9	18777227	18777227	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040272.4	+1	validated	p.G1000	0.079	21	0%	24	45.8%	0	-	-	-	-	NULL
RRAGA	10670	genome.wustl.edu	37	9	19049932	19049932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006570.4	+1	validated	p.F92S	1.000	87	0%	57	31.6%	138	41.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DENND4C	55667	genome.wustl.edu	37	9	19324431	19324431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017925.4	+1	provisional	p.R391C	1.000	257	0%	202	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_dDENN,HMMSmart_SM00801
DENND4C	55667	genome.wustl.edu	37	9	19357969	19357969	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017925.4	+1	provisional	p.E1372D	0.002	60	0%	72	30.6%	7	14.2%	benign(0.285)	tolerated(0.52)	neutral(0.096)	NULL
SLC24A2	25769	genome.wustl.edu	37	9	19550152	19550152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020344.1	-1	provisional	p.P488S	1.000	260	0%	178	32%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MLLT3	4300	genome.wustl.edu	37	9	20414132	20414132	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004529.2	-1	validated	p.E238*	1.000	392	0%	302	29.8%	1	0%	-	-	-	NULL
IFNA10	3446	genome.wustl.edu	37	9	21206776	21206776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002171.1	-1	provisional	p.K107N	0.000	366	0%	348	26.4%	0	-	benign(0.323)	deleterious(0.02)	deleterious(0.484)	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
IFNA2	3440	genome.wustl.edu	37	9	21385071	21385071	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000605.3	-1	validated	p.I86	0.002	257	0%	332	27.1%	0	-	-	-	-	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
DMRTA1	63951	genome.wustl.edu	37	9	22451497	22451497	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022160.2	+1	validated	p.E368*	1.000	162	0%	95	27.4%	0	-	-	-	-	NULL
IFT74	80173	genome.wustl.edu	37	9	27048219	27048219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099222.1	+1	validated	p.F427S	1.000	111	0%	100	36%	12	8.3%	benign(0.249)	tolerated(0.2)	neutral(0.074)	NULL
TEK	7010	genome.wustl.edu	37	9	27190607	27190607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000459.3	+1	reviewed	p.Y470H	1.000	347	0.3%	339	35.1%	1	0%	benign(0.104)	deleterious(0)	neutral(0.453)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
C9orf11	54586	genome.wustl.edu	37	9	27289725	27289725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020641.2	-1	validated	p.I142M	0.382	90	0%	71	26.8%	0	-	benign(0.278)	deleterious(0.02)	neutral(0.413)	NULL
C9orf72	203228	genome.wustl.edu	37	9	27566901	27566901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018325.2	-1	validated	p.R73Q	1.000	102	0%	96	31.2%	3	0%	probably_damaging(0.974)	tolerated(0.07)	deleterious(0.735)	NULL
LINGO2	158038	genome.wustl.edu	37	9	27949147	27949147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152570.1	-1	provisional	p.F508S	1.000	192	0%	147	27.9%	0	-	benign(0)	tolerated(0.9)	-	NULL
LINGO2	158038	genome.wustl.edu	37	9	27949498	27949498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152570.1	-1	provisional	p.R391M	0.907	125	0%	81	30.9%	0	-	benign(0.394)	deleterious(0.02)	deleterious(0.510)	HMMSmart_LRRCT,superfamily_SSF52058
ACO1	48	genome.wustl.edu	37	9	32433766	32433766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002197.2	+1	reviewed	p.D631G	1.000	243	0.4%	205	26.3%	16	0%	benign(0)	tolerated(1)	-	NULL
DDX58	23586	genome.wustl.edu	37	9	32459487	32459487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014314.3	-1	reviewed	p.K788T	0.937	117	0%	103	27.2%	6	33.3%	benign(0.37)	deleterious(0.02)	deleterious(0.500)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX58	23586	genome.wustl.edu	37	9	32466345	32466345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014314.3	-1	reviewed	p.M760I	1.000	110	0%	71	26.8%	9	55.5%	benign(0.004)	tolerated(0.33)	neutral(0.024)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TAF1L	138474	genome.wustl.edu	37	9	32631084	32631084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153809.2	-1	provisional	p.E1498D	0.998	391	0%	429	32.9%	0	-	benign(0.002)	tolerated(0.26)	neutral(0.034)	HMMSmart_BROMO,superfamily_Bromodomain
TAF1L	138474	genome.wustl.edu	37	9	32631196	32631196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153809.2	-1	provisional	p.R1461Q	1.000	391	0%	435	10.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
TAF1L	138474	genome.wustl.edu	37	9	32631823	32631823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153809.2	-1	provisional	p.R1252Q	1.000	267	0%	296	34.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32632905	32632905	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153809.2	-1	provisional	p.T891	1.000	273	0%	318	29.2%	0	-	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32633360	32633360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153809.2	-1	provisional	p.E740K	1.000	306	0%	322	31.7%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32633905	32633905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153809.2	-1	provisional	p.R558Q	1.000	484	0%	496	30.8%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
AQP7	364	genome.wustl.edu	37	9	33387085	33387085	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001170.1	-1	reviewed	p.F50	0.982	167	0%	179	11.7%	0	-	-	-	-	HMMPfam_MIP,superfamily_MIP
NOL6	65083	genome.wustl.edu	37	9	33462765	33462765	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022917.4	-1	reviewed	p.L1113R	0.017	102	0%	75	28%	33	30.3%	possibly_damaging(0.584)	tolerated(0.44)	neutral(0.214)	HMMPfam_Nrap
UBAP2	55833	genome.wustl.edu	37	9	33943461	33943461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018449.2	-1	reviewed	p.N558H	0.992	220	0%	190	31.1%	11	36.3%	benign(0.121)	tolerated(0.09)	neutral(0.306)	NULL
UBAP2	55833	genome.wustl.edu	37	9	33989068	33989068	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018449.2	-1	reviewed	p.E115	1.000	347	0%	282	35.5%	7	57.1%	-	-	-	NULL
KIF24	347240	genome.wustl.edu	37	9	34257854	34257854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194313.2	-1	validated	p.S584Y	1.000	124	0%	141	13.5%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
KIF24	347240	genome.wustl.edu	37	9	34257897	34257897	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194313.2	-1	validated	p.R570*	1.000	177	0%	179	31.3%	2	0%	-	-	-	NULL
C9orf24	84688	genome.wustl.edu	37	9	34397628	34397628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032596.3	-1	reviewed	p.F2L	1.000	156	0%	120	25.8%	0	-	possibly_damaging(0.636)	deleterious(0)	deleterious(0.667)	NULL
DNAI1	27019	genome.wustl.edu	37	9	34490458	34490458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012144.2	+1	reviewed	p.A198D	1.000	260	0%	200	29.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
KIAA1045	23349	genome.wustl.edu	37	9	34978067	34978067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015297.1	+1	validated	p.R388C	1.000	164	0%	172	28.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAJB5	25822	genome.wustl.edu	37	9	34997191	34997191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135005.1	+1	validated	p.R400C	1.000	175	0%	172	28.5%	22	50%	probably_damaging(0.984)	tolerated(0.05)	deleterious(0.776)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
VCP	7415	genome.wustl.edu	37	9	35063019	35063019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007126.3	-1	reviewed	p.R256Q	1.000	177	0%	118	33.1%	197	51.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
VCP	7415	genome.wustl.edu	37	9	35067943	35067943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007126.3	-1	reviewed	p.R83W	1.000	132	0.8%	130	19.2%	172	27.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CDC48_N,superfamily_ADC-like
PIGO	84720	genome.wustl.edu	37	9	35091815	35091815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032634.2	-1	reviewed	p.R690H	1.000	44	0%	38	60.5%	13	38.4%	benign(0.002)	tolerated(0.78)	neutral(0.001)	NULL
STOML2	30968	genome.wustl.edu	37	9	35100958	35100958	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013442.1	-1	provisional	p.R259*	1.000	354	0%	299	15.7%	193	0.5%	-	-	-	NULL
STOML2	30968	genome.wustl.edu	37	9	35101426	35101426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013442.1	-1	provisional	p.M192I	1.000	236	0%	217	27.6%	210	49%	probably_damaging(0.985)	deleterious(0.05)	deleterious(0.777)	HMMPfam_Band_7,HMMSmart_PHB
FAM214B	80256	genome.wustl.edu	37	9	35106286	35106286	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025182.2	-1	predicted	p.F394C	1.000	138	0%	121	29.8%	24	45.8%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
UNC13B	10497	genome.wustl.edu	37	9	35231179	35231179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006377.3	+1	reviewed	p.R39C	1.000	102	0%	73	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
UNC13B	10497	genome.wustl.edu	37	9	35310546	35310546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006377.3	+1	reviewed	p.E282K	0.997	204	0%	156	31.4%	4	100%	benign(0.026)	tolerated(0.74)	neutral(0.003)	NULL
RUSC2	9853	genome.wustl.edu	37	9	35560450	35560450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135999.1	+1	validated	p.W1271C	1.000	49	0%	28	32.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RUSC2	9853	genome.wustl.edu	37	9	35560483	35560483	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135999.1	+1	validated	p.I1282	0.938	62	0%	33	21.2%	4	0%	-	-	-	NULL
TESK1	7016	genome.wustl.edu	37	9	35608987	35608987	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006285.2	+1	reviewed	p.R377*	0.989	327	0%	307	28.3%	71	49.2%	-	-	-	NULL
CD72	971	genome.wustl.edu	37	9	35616244	35616244	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001782.2	-1	validated	p.T128	0.000	98	1%	115	34.8%	4	0%	-	-	-	NULL
C9orf100	84904	genome.wustl.edu	37	9	35662589	35662589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032818.2	-1	provisional	p.K275E	0.984	39	0%	50	24%	13	7.6%	benign(0.009)	tolerated(0.1)	neutral(0.287)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TLN1	7094	genome.wustl.edu	37	9	35707750	35707750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006289.3	-1	reviewed	p.A1537V	1.000	168	0%	156	34%	70	15.7%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	superfamily_SSF109885
TLN1	7094	genome.wustl.edu	37	9	35711750	35711750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006289.3	-1	reviewed	p.R1241W	0.998	227	0%	199	28.6%	43	9.3%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_VBS
TLN1	7094	genome.wustl.edu	37	9	35724590	35724590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006289.3	-1	reviewed	p.K164E	1.000	617	0%	605	28.6%	21	14.2%	possibly_damaging(0.838)	deleterious(0)	deleterious(0.764)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
GBA2	57704	genome.wustl.edu	37	9	35744648	35744648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020944.2	-1	reviewed	p.D139N	1.000	77	0%	76	39.5%	8	37.5%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
GBA2	57704	genome.wustl.edu	37	9	35748417	35748417	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020944.2	-1	reviewed	p.T95	0.580	207	0%	166	28.3%	6	66.6%	-	-	-	NULL
TMEM8B	51754	genome.wustl.edu	37	9	35853531	35853531	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042589.1	+1	provisional	p.C371*	1.000	39	0%	29	41.4%	2	100%	-	-	-	NULL
OR13J1	392309	genome.wustl.edu	37	9	35870169	35870169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004487.1	-1	provisional	p.F77C	0.163	107	0%	81	24.7%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2S2	56656	genome.wustl.edu	37	9	35957992	35957992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019897.2	-1	provisional	p.M35T	0.963	141	0%	108	28.7%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	superfamily_SSF81321
RECK	8434	genome.wustl.edu	37	9	36100439	36100439	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021111.2	+1	reviewed	p.V399	1.000	188	0%	158	31%	0	-	-	-	-	NULL
ZCCHC7	84186	genome.wustl.edu	37	9	37305550	37305550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032226.2	+1	validated	p.R264C	0.000	255	0%	216	34.7%	9	33.3%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains
ZCCHC7	84186	genome.wustl.edu	37	9	37349415	37349415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032226.2	+1	validated	p.C350F	1.000	214	0%	218	21.6%	21	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains
FRMPD1	22844	genome.wustl.edu	37	9	37729762	37729762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014907.2	+1	validated	p.R217Q	0.997	204	0%	209	29.7%	0	-	probably_damaging(0.994)	tolerated(0.26)	deleterious(0.486)	HMMSmart_B41
FRMPD1	22844	genome.wustl.edu	37	9	37733798	37733798	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014907.2	+1	validated	p.G398	0.998	161	0%	165	29.1%	0	-	-	-	-	HMMPfam_FERM_M,HMMSmart_B41
FRMPD1	22844	genome.wustl.edu	37	9	37745306	37745306	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014907.2	+1	validated	p.E1093*	0.003	198	0%	135	31.1%	0	-	-	-	-	NULL
DCAF10	79269	genome.wustl.edu	37	9	37861177	37861177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024345.3	+1	validated	p.R451Q	1.000	213	0%	192	31.2%	10	50%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	superfamily_WD40 repeat-like
MCART1	92014	genome.wustl.edu	37	9	37887672	37887672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033412.3	-1	validated	p.F292L	1.000	179	0%	122	27%	5	0%	benign(0)	tolerated(1)	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
ALDH1B1	219	genome.wustl.edu	37	9	38396515	38396515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000692.3	+1	reviewed	p.K257R	1.000	84	0%	80	27.5%	36	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
C9orf51	647044	genome.wustl.edu	37	9	38527536	38527536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000377689	+1	known	p.R148Q	0.001	51	0%	41	36.6%	0	-	benign(0.24)	tolerated(0.47)	neutral(0.035)	NULL
ANKRD18A	253650	genome.wustl.edu	37	9	38615699	38615699	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000399703	-1	known	p.I129	0.002	57	0%	38	36.8%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CNTNAP3	79937	genome.wustl.edu	37	9	39088491	39088491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033655.3	-1	reviewed	p.R1050Q	0.002	153	0%	150	18%	0	-	benign(0.008)	tolerated(1)	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CNTNAP3	79937	genome.wustl.edu	37	9	39178280	39178280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033655.3	-1	reviewed	p.D206Y	0.781	291	0%	277	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
ZNF658	26149	genome.wustl.edu	37	9	40773242	40773242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033160.5	-1	validated	p.R678I	1.000	663	0%	491	26.1%	1	0%	possibly_damaging(0.717)	tolerated(0.23)	neutral(0.301)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANKRD20A4	728747	genome.wustl.edu	37	9	69389983	69389983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098805.1	+1	provisional	p.E179D	0.001	397	0%	306	6.9%	0	-	benign(0.235)	tolerated(0.2)	neutral(0.073)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD20A4	728747	genome.wustl.edu	37	9	69410113	69410113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098805.1	+1	provisional	p.D343Y	0.121	840	0%	804	10.4%	0	-	possibly_damaging(0.85)	deleterious(0.03)	deleterious(0.692)	NULL
LOC100288765	100288765	genome.wustl.edu	37	9	69847060	69847060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342925.1	+1	model	p.R385I	1.000	95	0%	107	14%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CBWD3	445571	genome.wustl.edu	37	9	70912685	70912685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201453.2	+1	validated	p.K301N	1.000	652	0%	519	12.5%	0	-	possibly_damaging(0.832)	tolerated(0.27)	neutral(0.351)	HMMPfam_CobW_C,superfamily_Cbl_biosynth_CobW-like_C
PGM5	5239	genome.wustl.edu	37	9	71098928	71098928	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021965.3	+1	validated	p.Y481	0.652	320	0%	303	29.7%	0	-	-	-	-	HMMPfam_PGM_PMM_IV,superfamily_Phosphoglucomutase C-terminal domain
FAM122A	116224	genome.wustl.edu	37	9	71395691	71395691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138333.3	+1	validated	p.R204I	1.000	202	0%	218	32.1%	17	11.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PRKACG	5568	genome.wustl.edu	37	9	71628435	71628435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002732.3	-1	reviewed	p.V192M	1.000	45	0%	42	21.4%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FAM189A2	9413	genome.wustl.edu	37	9	72002935	72002935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000377216	+1	known	p.M27V	0.004	16	0%	24	20.8%	0	-	unknown(0)	-	-	NULL
C9orf135	138255	genome.wustl.edu	37	9	72471576	72471576	+	Missense_Mutation	SNP	G	G	A	rs148045947	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010940.1	+1	validated	p.G123R	0.981	160	0%	144	28.5%	0	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
SMC5	23137	genome.wustl.edu	37	9	72879294	72879294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015110.3	+1	validated	p.S87L	1.000	211	0%	161	31.1%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_SSF52540
TRPM3	80036	genome.wustl.edu	37	9	73151357	73151357	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007471.2	-1	reviewed	p.S1546R	1.000	165	0%	196	31.6%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73151581	73151581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007471.2	-1	reviewed	p.S1471Y	1.000	128	0%	96	10.4%	0	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73167936	73167936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007471.2	-1	reviewed	p.S1121L	1.000	265	0%	284	32%	0	-	possibly_damaging(0.804)	deleterious(0.02)	deleterious(0.685)	NULL
MIR204	406987	genome.wustl.edu	37	9	73424991	73424991	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385200	-1	known	NULL	1.000	175	0%	168	37.5%	0	-	-	-	-	-
TMEM2	23670	genome.wustl.edu	37	9	74319525	74319525	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013390.2	-1	validated	p.L1060	1.000	193	0%	207	31.4%	8	50%	-	-	-	NULL
TMEM2	23670	genome.wustl.edu	37	9	74329881	74329881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013390.2	-1	validated	p.D854Y	1.000	138	0%	125	29.6%	8	37.5%	possibly_damaging(0.538)	deleterious(0.01)	deleterious(0.588)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74345107	74345107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013390.2	-1	validated	p.E612D	0.999	166	0%	163	29.4%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Pectin lyase-like
FAM108B1	51104	genome.wustl.edu	37	9	74481837	74481837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016014.2	-1	validated	p.A245T	1.000	92	0%	91	34.1%	8	37.5%	benign(0.004)	tolerated(0.44)	neutral(0.013)	superfamily_SSF53474
TMC1	117531	genome.wustl.edu	37	9	75366838	75366838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138691.2	+1	reviewed	p.F203C	1.000	193	0%	236	30.5%	0	-	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
ALDH1A1	216	genome.wustl.edu	37	9	75542084	75542084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000689.3	-1	reviewed	p.F151C	0.994	169	0%	106	28.3%	4	0%	possibly_damaging(0.826)	tolerated(0.05)	deleterious(0.659)	HMMPfam_Aldedh,superfamily_ALDH-like
ANXA1	301	genome.wustl.edu	37	9	75769242	75769242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000376912	+1	known	p.M1I	0.012	46	0%	63	28.6%	0	-	unknown(0)	-	-	NULL
RORB	6096	genome.wustl.edu	37	9	77282747	77282747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006914.3	+1	reviewed	p.K347N	1.000	155	0%	141	29.8%	0	-	benign(0.402)	deleterious(0.05)	deleterious(0.474)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TRPM6	140803	genome.wustl.edu	37	9	77400934	77400934	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017662.4	-1	reviewed	p.F925	0.062	475	0%	348	31.6%	0	-	-	-	-	HMMPfam_Ion_trans
TRPM6	140803	genome.wustl.edu	37	9	77407553	77407553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017662.4	-1	reviewed	p.F842C	1.000	201	0%	134	31.3%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
C9orf41	138199	genome.wustl.edu	37	9	77613613	77613613	+	Nonsense_Mutation	SNP	G	G	A	rs190060534	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152420.1	-1	predicted	p.R271*	1.000	186	0.5%	135	31.1%	2	50%	-	-	-	HMMPfam_N2227,superfamily_SSF53335
PCSK5	5125	genome.wustl.edu	37	9	78790202	78790202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000376767	+1	known	p.S686L	0.001	72	0%	75	28%	0	-	unknown(0)	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79318375	79318377	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	GGT	GGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015225.2	-1	validated	p.T2718in_frame_del	0.998:0.952:0.923	-	-	-	-	-	-	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79320710	79320710	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000426088	-1	known	p.R1482*	0.000	160	0.6%	138	34.8%	0	-	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79321534	79321534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015225.2	-1	validated	p.P1886T	0.303	37	0%	43	30.2%	0	-	benign(0.018)	deleterious(0)	neutral(0.445)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79323980	79323980	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000426088	-1	known	p.R392C	0.000	122	0%	106	26.4%	0	-	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79465503	79465503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015225.2	-1	validated	p.F74L	1.000	339	0%	245	24.5%	0	-	possibly_damaging(0.8)	tolerated(0.06)	deleterious(0.623)	superfamily_SSF64182
VPS13A	23230	genome.wustl.edu	37	9	79836192	79836192	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033305.2	+1	reviewed	p.K361Q	0.199	251	0%	235	31.9%	0	-	benign(0.051)	tolerated(0.36)	neutral(0.023)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79929530	79929530	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033305.2	+1	reviewed	p.K1454N	0.998	185	0%	126	28.6%	0	-	benign(0.062)	tolerated(0.06)	neutral(0.327)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79936471	79936471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033305.2	+1	reviewed	p.I1880T	0.996	213	0%	218	41.3%	2	100%	possibly_damaging(0.731)	deleterious(0.01)	deleterious(0.673)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79952302	79952302	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033305.2	+1	reviewed	p.S2076*	0.980	128	0%	148	29.7%	0	-	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79981733	79981733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033305.2	+1	reviewed	p.L2806I	1.000	75	0%	52	30.8%	0	-	possibly_damaging(0.894)	tolerated(0.05)	deleterious(0.698)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79984284	79984284	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033305.2	+1	reviewed	p.E2875*	1.000	250	0%	224	32.1%	2	0%	-	-	-	NULL
TLE4	7091	genome.wustl.edu	37	9	82319751	82319751	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000496114	+1	known	p.L12F	1.000	742	0%	479	29%	0	-	-	-	-	NULL
TLE4	7091	genome.wustl.edu	37	9	82322053	82322053	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000376534	+1	known	p.K318*	0.030	512	0%	388	28.1%	0	-	-	-	-	NULL
RASEF	158158	genome.wustl.edu	37	9	85615382	85615382	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152573.2	-1	provisional	p.S514*	0.078	138	0%	116	22.4%	0	-	-	-	-	NULL
FRMD3	257019	genome.wustl.edu	37	9	85913715	85913715	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174938.4	-1	validated	p.E340*	1.000	152	0%	163	32.5%	0	-	-	-	-	HMMPfam_FA,superfamily_PH domain-like
UBQLN1	29979	genome.wustl.edu	37	9	86294871	86294871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013438.4	-1	reviewed	p.R177Q	1.000	204	0%	179	40.2%	64	40.6%	benign(0.371)	tolerated(0.37)	neutral(0.137)	NULL
UBQLN1	29979	genome.wustl.edu	37	9	86297895	86297895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013438.4	-1	reviewed	p.G140D	1.000	129	0%	122	27%	38	31.5%	benign(0.049)	tolerated(0.48)	neutral(0.014)	NULL
KIF27	55582	genome.wustl.edu	37	9	86482758	86482758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017576.1	-1	provisional	p.K925N	1.000	96	0%	71	35.2%	0	-	possibly_damaging(0.739)	deleterious(0)	deleterious(0.715)	NULL
KIF27	55582	genome.wustl.edu	37	9	86518061	86518061	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017576.1	-1	provisional	p.R458*	0.000	262	0%	245	31%	0	-	-	-	-	NULL
HNRNPK	3190	genome.wustl.edu	37	9	86585178	86585178	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002140.3	-1	reviewed	p.S420	0.408	144	0%	139	30.2%	671	61.5%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
RMI1	80010	genome.wustl.edu	37	9	86617668	86617668	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024945.2	+1	validated	p.C589	1.000	200	0%	218	33.9%	12	83.3%	-	-	-	NULL
NTRK2	4915	genome.wustl.edu	37	9	87338531	87338531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006180.3	+1	reviewed	p.E209D	1.000	228	0%	187	34.2%	1	0%	benign(0.035)	tolerated(0.48)	neutral(0.013)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
GOLM1	51280	genome.wustl.edu	37	9	88661396	88661396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016548.3	-1	reviewed	p.F152L	1.000	73	0%	60	28.3%	28	17.8%	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88968088	88968088	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024617.3	-1	validated	p.F9	0.999	279	0%	189	34.4%	1	0%	-	-	-	NULL
C9orf170	401535	genome.wustl.edu	37	9	89771581	89771581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001709.2	+1	validated	p.D88Y	0.000	116	0%	118	29.7%	0	-	unknown(0)	-	-	NULL
DAPK1	1612	genome.wustl.edu	37	9	90254393	90254393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004938.2	+1	reviewed	p.F183C	1.000	510	0.2%	432	36.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DAPK1	1612	genome.wustl.edu	37	9	90315115	90315115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004938.2	+1	reviewed	p.R945Q	1.000	178	0%	137	33.6%	2	0%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90322150	90322150	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004938.2	+1	reviewed	p.A1388	0.000	37	0%	43	41.9%	5	0%	-	-	-	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
C9orf79	286234	genome.wustl.edu	37	9	90500560	90500560	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178828.4	+1	validated	p.A386	0.000	177	0%	145	29%	0	-	-	-	-	NULL
C9orf79	286234	genome.wustl.edu	37	9	90502591	90502591	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178828.4	+1	validated	p.D1063	0.000	91	0%	57	26.3%	0	-	-	-	-	NULL
SECISBP2	79048	genome.wustl.edu	37	9	91940542	91940542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024077.3	+1	reviewed	p.R128Q	0.000	434	0%	411	31.4%	3	33.3%	benign(0.15)	deleterious(0)	neutral(0.458)	NULL
SECISBP2	79048	genome.wustl.edu	37	9	91940885	91940885	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024077.3	+1	reviewed	p.S169*	0.006	225	0%	219	29.2%	0	-	-	-	-	NULL
SECISBP2	79048	genome.wustl.edu	37	9	91949453	91949453	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024077.3	+1	reviewed	p.P299	1.000	132	0%	108	34.3%	3	0%	-	-	-	NULL
SEMA4D	10507	genome.wustl.edu	37	9	92003878	92003878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006378.3	-1	validated	p.G287S	0.988	116	0%	68	29.4%	11	36.3%	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
GADD45G	10912	genome.wustl.edu	37	9	92220687	92220687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006705.3	+1	reviewed	p.E87D	1.000	19	0%	13	30.8%	8	37.5%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Ribosomal_L7Ae
ROR2	4920	genome.wustl.edu	37	9	94488850	94488850	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004560.2	-1	reviewed	p.E453	0.983	88	0%	65	33.8%	4	0%	-	-	-	NULL
ROR2	4920	genome.wustl.edu	37	9	94519581	94519581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004560.2	-1	reviewed	p.A146T	0.980	206	0%	166	24.7%	5	20%	benign(0.003)	tolerated(0.52)	neutral(0.009)	HMMPfam_I-set,superfamily_SSF48726
SPTLC1	10558	genome.wustl.edu	37	9	94821472	94821472	+	Missense_Mutation	SNP	C	C	T	rs183695413	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006415.2	-1	reviewed	p.E227K	0.999	120	0%	83	15.7%	31	16.1%	benign(0.008)	tolerated(0.75)	neutral(0.002)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
IARS	3376	genome.wustl.edu	37	9	95005506	95005506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002161.4	-1	reviewed	p.R998C	1.000	85	0%	71	28.2%	56	41%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OGN	4969	genome.wustl.edu	37	9	95165682	95165682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014057.3	-1	reviewed	p.T3N	0.948	66	0%	45	40%	1	0%	benign(0.023)	deleterious(0)	neutral(0.446)	NULL
OMD	4958	genome.wustl.edu	37	9	95179082	95179082	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005014.2	-1	validated	p.F253	0.057	182	0%	181	32.6%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
IPPK	64768	genome.wustl.edu	37	9	95378146	95378146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022755.4	-1	validated	p.E482K	0.993	68	0%	47	61.7%	5	100%	benign(0.393)	deleterious(0.02)	deleterious(0.509)	NULL
IPPK	64768	genome.wustl.edu	37	9	95400409	95400409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022755.4	-1	validated	p.V264M	0.968	40	0%	30	20%	4	75%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_Ins_P5_2-kin
ZNF484	83744	genome.wustl.edu	37	9	95609601	95609601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031486.1	-1	provisional	p.H490N	1.000	197	0.5%	201	29.4%	1	100%	possibly_damaging(0.711)	deleterious(0.01)	deleterious(0.663)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM120A	23196	genome.wustl.edu	37	9	96233641	96233641	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014612.3	+1	validated	p.N231K	0.994	217	0%	198	29.3%	51	39.2%	possibly_damaging(0.915)	tolerated(0.86)	neutral(0.367)	superfamily_PIN domain-like
FAM120A	23196	genome.wustl.edu	37	9	96259861	96259861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014612.3	+1	validated	p.D305Y	1.000	86	0%	84	23.8%	44	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHF2	5253	genome.wustl.edu	37	9	96436081	96436081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005392.3	+1	reviewed	p.D855N	0.981	26	0%	22	22.7%	18	27.7%	possibly_damaging(0.9)	tolerated(0.11)	deleterious(0.628)	NULL
PTPDC1	138639	genome.wustl.edu	37	9	96847620	96847620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152422.3	+1	reviewed	p.A109V	0.992	128	0.8%	124	33.1%	1	0%	possibly_damaging(0.879)	tolerated(0.09)	deleterious(0.639)	NULL
PTCH1	5727	genome.wustl.edu	37	9	98224149	98224149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000264.3	-1	reviewed	p.D898N	1.000	40	0%	30	23.3%	5	20%	benign(0.006)	tolerated(0.34)	neutral(0.023)	HMMPfam_Patched
C9orf102	375748	genome.wustl.edu	37	9	98643528	98643528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010895.2	+1	validated	p.G153*	1.000	161	0%	149	24.8%	0	-	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
C9orf102	375748	genome.wustl.edu	37	9	98703759	98703759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010895.2	+1	validated	p.F603S	1.000	108	0%	98	34.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
HABP4	22927	genome.wustl.edu	37	9	99228053	99228053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014282.2	+1	validated	p.D246Y	1.000	145	0%	89	38.2%	11	45.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HABP4_PAI-RBP1
CDC14B	8555	genome.wustl.edu	37	9	99284870	99284870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033331.2	-1	reviewed	p.E421K	0.999	70	0%	92	31.5%	4	0%	benign(0.424)	tolerated(0.11)	neutral(0.409)	NULL
CDC14B	8555	genome.wustl.edu	37	9	99296263	99296263	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033331.2	-1	reviewed	p.E298*	1.000	57	0%	44	31.8%	4	0%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
ZNF510	22869	genome.wustl.edu	37	9	99522531	99522531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014930.1	-1	provisional	p.R194I	0.171	145	0%	149	13.4%	1	0%	possibly_damaging(0.928)	tolerated(0.31)	neutral(0.403)	NULL
ZNF782	158431	genome.wustl.edu	37	9	99580392	99580392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001662.1	-1	provisional	p.R638Q	1.000	389	0%	440	36.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288141	100288141	genome.wustl.edu	37	9	100069842	100069842	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342930.1	-1	model	p.E66	0.000	24	0%	25	24%	0	-	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100090419	100090419	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020893.1	+1	predicted	p.I776	1.000	213	0%	257	30%	0	-	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100116895	100116895	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020893.1	+1	predicted	p.S1031*	0.001	122	0%	136	32.4%	0	-	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100122285	100122285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020893.1	+1	predicted	p.L1144I	0.003	340	0%	336	32.1%	0	-	probably_damaging(0.959)	tolerated(0.2)	neutral(0.452)	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100122377	100122377	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020893.1	+1	predicted	p.V1174	0.012	185	0%	199	27.1%	0	-	-	-	-	NULL
TDRD7	23424	genome.wustl.edu	37	9	100232905	100232905	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014290.2	+1	validated	p.P565	0.935	143	0%	84	25%	10	30%	-	-	-	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
NCBP1	4686	genome.wustl.edu	37	9	100403944	100403944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002486.4	+1	reviewed	p.V75A	1.000	265	0%	236	32.6%	2	100%	benign(0.021)	deleterious(0.04)	neutral(0.350)	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
HEMGN	55363	genome.wustl.edu	37	9	100692889	100692889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018437.3	-1	validated	p.K263T	0.012	307	0%	322	30.7%	0	-	benign(0.022)	tolerated(0.07)	neutral(0.320)	NULL
HEMGN	55363	genome.wustl.edu	37	9	100693016	100693016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018437.3	-1	validated	p.D221Y	0.002	382	0%	350	30.3%	0	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
TBC1D2	55357	genome.wustl.edu	37	9	100961855	100961855	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018421.3	-1	validated	p.I854	0.936	160	0.6%	126	27%	56	33.9%	-	-	-	superfamily_RabGAP_TBC
GABBR2	9568	genome.wustl.edu	37	9	101068622	101068622	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005458.7	-1	reviewed	p.F670	1.000	35	0%	25	44%	0	-	-	-	-	HMMPfam_7tm_3
ANKS6	203286	genome.wustl.edu	37	9	101544803	101544803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173551.3	-1	provisional	p.R389C	1.000	109	0%	82	15.9%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,superfamily_Ankyrin repeat
COL15A1	1306	genome.wustl.edu	37	9	101782716	101782716	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001855.3	+1	reviewed	p.G565*	0.972	145	0%	148	27%	37	0%	-	-	-	NULL
TGFBR1	7046	genome.wustl.edu	37	9	101894906	101894906	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004612.2	+1	reviewed	p.V153	1.000	323	0%	241	27%	13	30.7%	-	-	-	NULL
NR4A3	8013	genome.wustl.edu	37	9	102609772	102609772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173200.1	+1	reviewed	p.R514Q	1.000	140	0%	198	23.7%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
INVS	27130	genome.wustl.edu	37	9	102888668	102888668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014425.2	+1	reviewed	p.N37S	0.999	106	0%	105	31.4%	6	33.3%	benign(0.016)	tolerated(0.31)	neutral(0.028)	superfamily_Ankyrin repeat
INVS	27130	genome.wustl.edu	37	9	103014696	103014696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014425.2	+1	reviewed	p.D404Y	1.000	141	0%	134	11.9%	3	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TEX10	54881	genome.wustl.edu	37	9	103082641	103082641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017746.3	-1	validated	p.R703Q	1.000	93	0%	81	24.7%	46	52.1%	probably_damaging(0.988)	tolerated(0.25)	deleterious(0.474)	NULL
TEX10	54881	genome.wustl.edu	37	9	103090147	103090147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017746.3	-1	validated	p.D575N	1.000	174	0%	147	32.7%	36	52.7%	probably_damaging(0.982)	tolerated(0.28)	neutral(0.458)	NULL
MSANTD3	91283	genome.wustl.edu	37	9	103212962	103212962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080655.1	+1	predicted	p.K181T	1.000	155	0%	137	35.8%	25	24%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
MURC	347273	genome.wustl.edu	37	9	103340659	103340659	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001018116.1	+1	validated	p.S78	0.950	319	0%	225	31.1%	0	-	-	-	-	NULL
BAAT	570	genome.wustl.edu	37	9	104133259	104133259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127610.1	-1	reviewed	p.R143L	0.000	267	0%	223	31.4%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Bile_Hydr_Trans,superfamily_SSF53474
ALDOB	229	genome.wustl.edu	37	9	104193159	104193159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000035.3	-1	reviewed	p.R4Q	0.972	69	0%	50	30%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	superfamily_Aldolase
C9orf125	84302	genome.wustl.edu	37	9	104238660	104238660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032342.1	-1	provisional	p.D239Y	0.568	115	0%	133	36.1%	1	0%	benign(0.005)	tolerated(0.07)	neutral(0.319)	NULL
PPP3R2	5535	genome.wustl.edu	37	9	104356946	104356946	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147180.2	-1	provisional	p.G89	0.000	114	0%	125	28%	0	-	-	-	-	superfamily_SSF47473
GRIN3A	116443	genome.wustl.edu	37	9	104432452	104432452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133445.2	-1	reviewed	p.L748I	1.000	144	0%	121	33.1%	0	-	probably_damaging(0.971)	tolerated(0.14)	deleterious(0.662)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
CYLC2	1539	genome.wustl.edu	37	9	105767844	105767844	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001340.3	+1	reviewed	p.E311*	0.005	224	0%	199	28.1%	0	-	-	-	-	NULL
OR13C3	138803	genome.wustl.edu	37	9	107298225	107298225	+	Silent	SNP	C	C	T	rs193038494	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001961.1	-1	provisional	p.A290	0.246	286	0%	284	61.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR13C8	138802	genome.wustl.edu	37	9	107331656	107331656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004483.1	+1	provisional	p.D70N	1.000	489	0%	436	31.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR13C8	138802	genome.wustl.edu	37	9	107332410	107332410	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004483.1	+1	provisional	p.*321L	0.004	110	0%	90	30%	0	-	-	-	-	NULL
OR13D1	286365	genome.wustl.edu	37	9	107456937	107456937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004484.1	+1	provisional	p.I79V	0.002	646	0%	618	31.9%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_7tm_1,superfamily_SSF81321
OR13D1	286365	genome.wustl.edu	37	9	107457581	107457581	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004484.1	+1	provisional	p.K293	0.978	286	0%	272	30.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NIPSNAP3B	55335	genome.wustl.edu	37	9	107528664	107528664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018376.2	+1	provisional	p.R40H	1.000	250	0%	222	27%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NIPSNAP
ABCA1	19	genome.wustl.edu	37	9	107618267	107618267	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000423487	-1	known	p.E275*	0.001	53	0%	77	33.8%	0	-	-	-	-	NULL
ABCA1	19	genome.wustl.edu	37	9	107645372	107645372	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005502.2	-1	reviewed	p.K123	1.000	259	0%	193	30.6%	1	0%	-	-	-	NULL
SLC44A1	23446	genome.wustl.edu	37	9	108118629	108118629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080546.3	+1	validated	p.E213*	1.000	273	0%	198	29.3%	18	0%	-	-	-	NULL
SLC44A1	23446	genome.wustl.edu	37	9	108123525	108123525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080546.3	+1	validated	p.E272*	1.000	245	0%	176	33%	15	0%	-	-	-	NULL
ZNF462	58499	genome.wustl.edu	37	9	109688088	109688088	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021224.4	+1	validated	p.F632C	1.000	934	0%	853	34.6%	0	-	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109688589	109688589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021224.4	+1	validated	p.D799G	1.000	348	0%	354	30.5%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109690918	109690918	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021224.4	+1	validated	p.G1575	0.490	67	0%	70	37.1%	2	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109691077	109691077	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021224.4	+1	validated	p.S1628	1.000	128	0%	105	35.2%	1	100%	-	-	-	superfamily_beta-sandwich domain of Sec23/24
ACTL7B	10880	genome.wustl.edu	37	9	111617443	111617443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006686.3	-1	reviewed	p.K256N	1.000	31	0%	17	35.3%	0	-	possibly_damaging(0.793)	deleterious(0)	deleterious(0.742)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
CTNNAL1	8727	genome.wustl.edu	37	9	111745572	111745572	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003798.2	-1	provisional	p.C251	0.902	126	0%	103	25.2%	34	41.1%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
EPB41L4B	54566	genome.wustl.edu	37	9	111979387	111979387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019114.3	-1	validated	p.R483Q	1.000	126	0%	146	27.4%	0	-	benign(0.424)	tolerated(0.12)	neutral(0.398)	NULL
EPB41L4B	54566	genome.wustl.edu	37	9	112018715	112018715	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019114.3	-1	validated	p.A266	1.000	291	0%	248	31%	10	10%	-	-	-	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
EPB41L4B	54566	genome.wustl.edu	37	9	112029805	112029805	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019114.3	-1	validated	p.R161*	1.000	118	0%	93	24.7%	0	-	-	-	-	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112899487	112899487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007203.4	+1	validated	p.S555P	0.999	71	0%	82	40.2%	9	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
SVEP1	79987	genome.wustl.edu	37	9	113163182	113163182	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153366.3	-1	validated	p.T3258	0.706	86	0%	62	25.8%	7	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113169673	113169673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153366.3	-1	validated	p.G2736E	1.000	146	0%	108	29.6%	1	0%	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113221262	113221262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153366.3	-1	validated	p.A1152T	0.000	200	0%	165	27.3%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_GCC2_GCC3
SVEP1	79987	genome.wustl.edu	37	9	113233752	113233752	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153366.3	-1	validated	p.S964A	1.000	152	0%	117	33.3%	0	-	possibly_damaging(0.787)	tolerated(0.07)	deleterious(0.613)	NULL
SVEP1	79987	genome.wustl.edu	37	9	113312262	113312262	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153366.3	-1	validated	p.I218	1.000	170	0%	184	29.3%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
MUSK	4593	genome.wustl.edu	37	9	113530090	113530090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000189978	+1	known	p.S310Y	0.773	340	0%	331	15.7%	0	-	unknown(0)	deleterious(0.01)	-	NULL
LPAR1	1902	genome.wustl.edu	37	9	113637934	113637934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001401.3	-1	reviewed	p.D288N	0.998	218	0%	128	30.5%	5	0%	benign(0)	tolerated(0.88)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KIAA0368	23392	genome.wustl.edu	37	9	114134817	114134817	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080398.1	-1	provisional	p.E1652*	0.998	235	0%	227	30.8%	27	0%	-	-	-	superfamily_ARM repeat
PTGR1	22949	genome.wustl.edu	37	9	114332454	114332454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012212.3	-1	reviewed	p.R266C	0.996	76	0%	82	30.5%	63	52.3%	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-bd
C9orf84	158401	genome.wustl.edu	37	9	114454239	114454239	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173521.3	-1	validated	p.K1276Q	0.001	115	0%	107	30.8%	0	-	benign(0.076)	tolerated(0.48)	neutral(0.016)	NULL
C9orf84	158401	genome.wustl.edu	37	9	114490225	114490225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173521.3	-1	validated	p.E444*	0.847	113	0%	111	31.5%	0	-	-	-	-	NULL
C9orf84	158401	genome.wustl.edu	37	9	114503818	114503818	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173521.3	-1	validated	p.E307A	0.001	70	0%	69	33.3%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
SUSD1	64420	genome.wustl.edu	37	9	114840954	114840954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000374263	-1	known	p.M539I	0.191	354	0%	386	28%	8	0%	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
KIAA1958	158405	genome.wustl.edu	37	9	115408030	115408030	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133465.2	+1	predicted	p.T424	0.096	119	0%	128	11.7%	1	0%	-	-	-	NULL
KIAA1958	158405	genome.wustl.edu	37	9	115421948	115421948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133465.2	+1	predicted	p.E584K	1.000	78	0%	71	31%	2	0%	benign(0.271)	tolerated(0.27)	neutral(0.062)	NULL
ZNF883	169834	genome.wustl.edu	37	9	115759651	115759651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001101338.1	-1	validated	p.E297K	0.008	292	0.3%	210	28.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BSPRY	54836	genome.wustl.edu	37	9	116122901	116122901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017688.2	+1	validated	p.A139P	1.000	22	0%	23	30.4%	32	40.6%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
AMBP	259	genome.wustl.edu	37	9	116823775	116823775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001633.3	-1	reviewed	p.Y261C	1.000	54	0%	42	21.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m
COL27A1	85301	genome.wustl.edu	37	9	117062362	117062362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032888.2	+1	validated	p.E1533K	0.994	66	0%	51	41.2%	1	0%	benign(0.085)	tolerated(0.54)	neutral(0.013)	HMMPfam_Collagen
ORM1	5004	genome.wustl.edu	37	9	117085972	117085972	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000607.2	+1	reviewed	p.S48	0.000	225	0%	166	28.9%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Lipocalin,superfamily_Calycin
DFNB31	25861	genome.wustl.edu	37	9	117188502	117188502	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015404.3	-1	reviewed	p.A385	0.000	90	0%	85	27.1%	3	33.3%	-	-	-	NULL
TNC	3371	genome.wustl.edu	37	9	117844122	117844122	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002160.2	-1	validated	p.E778A	1.000	146	0%	113	29.2%	44	40.9%	possibly_damaging(0.643)	deleterious(0.03)	deleterious(0.590)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PAPPA	5069	genome.wustl.edu	37	9	118969816	118969816	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002581.3	+1	reviewed	p.S520	0.989	263	0%	240	27.1%	0	-	-	-	-	superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119124901	119124901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002581.3	+1	reviewed	p.K1460Q	1.000	146	0%	155	23.2%	3	0%	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module,superfamily_SSF55486
TRIM32	22954	genome.wustl.edu	37	9	119461093	119461093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099679.1	+1	reviewed	p.L358I	1.000	190	0%	153	35.9%	10	60%	benign(0)	tolerated(0.48)	neutral(0.011)	superfamily_SSF101898
ASTN2	23245	genome.wustl.edu	37	9	119582920	119582920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198187.3	-1	reviewed	p.S728L	1.000	126	0%	111	24.3%	0	-	benign(0.003)	tolerated(0.87)	neutral(0.001)	superfamily_EGF/Laminin
ASTN2	23245	genome.wustl.edu	37	9	119858410	119858410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198187.3	-1	reviewed	p.A397T	1.000	129	0%	124	30.6%	0	-	possibly_damaging(0.906)	tolerated(0.58)	neutral(0.364)	NULL
DBC1	1620	genome.wustl.edu	37	9	122011292	122011292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014618.2	-1	validated	p.D119N	1.000	50	0%	30	26.7%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00457
CDK5RAP2	55755	genome.wustl.edu	37	9	123173697	123173697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018249.4	-1	reviewed	p.E1451D	0.998	180	0%	168	29.2%	21	38%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123182113	123182113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018249.4	-1	reviewed	p.D1377G	0.951	336	0%	295	34.6%	17	41.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PSMD5	5711	genome.wustl.edu	37	9	123583117	123583117	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005047.2	-1	reviewed	p.T419	0.929	145	0%	139	27.3%	2	0%	-	-	-	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
PSMD5	5711	genome.wustl.edu	37	9	123586959	123586959	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005047.2	-1	reviewed	p.F273	1.000	178	0%	176	35.2%	1	0%	-	-	-	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
TRAF1	7185	genome.wustl.edu	37	9	123671571	123671571	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005658.3	-1	reviewed	p.S323	0.000	143	0%	172	32.6%	3	0%	-	-	-	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
TRAF1	7185	genome.wustl.edu	37	9	123675645	123675645	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005658.3	-1	reviewed	p.S222	0.869	27	0%	36	33.3%	1	0%	-	-	-	NULL
C5	727	genome.wustl.edu	37	9	123768207	123768207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001735.2	-1	reviewed	p.S851Y	0.029	152	0%	124	27.4%	0	-	possibly_damaging(0.596)	deleterious(0.03)	deleterious(0.571)	HMMPfam_A2M
C5	727	genome.wustl.edu	37	9	123770737	123770737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001735.2	-1	reviewed	p.R766Q	1.000	176	0%	181	24.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C5	727	genome.wustl.edu	37	9	123780021	123780021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001735.2	-1	reviewed	p.R539Q	0.983	39	0%	37	18.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_A2M_N_2
C5	727	genome.wustl.edu	37	9	123808638	123808638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001735.2	-1	reviewed	p.I30T	0.986	109	0%	95	25.3%	0	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	HMMPfam_A2M_N
CNTRL	11064	genome.wustl.edu	37	9	123907525	123907525	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007018.4	+1	reviewed	p.R1058*	0.567	233	0%	226	28.3%	0	-	-	-	-	NULL
CNTRL	11064	genome.wustl.edu	37	9	123922535	123922535	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007018.4	+1	reviewed	p.E1682*	1.000	247	0.4%	201	31.3%	0	-	-	-	-	NULL
DAB2IP	153090	genome.wustl.edu	37	9	124543794	124543794	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032552.2	+1	validated	p.A1094	0.793	161	0%	111	25.2%	10	60%	-	-	-	NULL
RBM18	92400	genome.wustl.edu	37	9	125014229	125014229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033117.3	-1	validated	p.Q46R	1.000	121	0%	163	35%	15	46.6%	benign(0.028)	tolerated(0.12)	neutral(0.262)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PTGS1	5742	genome.wustl.edu	37	9	125148813	125148813	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000962.2	+1	reviewed	p.F366	0.001	237	0%	215	36.7%	4	50%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
OR1J1	347168	genome.wustl.edu	37	9	125239957	125239957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004451.1	-1	provisional	p.M83I	0.000	242	0%	282	34.4%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L3	26735	genome.wustl.edu	37	9	125438136	125438136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005234.1	+1	provisional	p.S243F	0.955	372	0%	328	34.8%	0	-	possibly_damaging(0.523)	deleterious(0.01)	deleterious(0.582)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZBTB26	57684	genome.wustl.edu	37	9	125681427	125681427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020924.2	-1	provisional	p.R263*	1.000	237	0%	196	33.2%	3	0%	-	-	-	NULL
ZBTB26	57684	genome.wustl.edu	37	9	125681980	125681980	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020924.2	-1	provisional	p.S78	0.884	175	0%	147	35.4%	2	0%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
RABGAP1	23637	genome.wustl.edu	37	9	125782658	125782658	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012197.3	+1	validated	p.R572*	0.997	123	0%	86	41.9%	4	0%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
STRBP	55342	genome.wustl.edu	37	9	125901897	125901897	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018387.4	-1	validated	p.S470A	1.000	116	0%	72	22.2%	50	54%	possibly_damaging(0.866)	tolerated(0.21)	neutral(0.380)	NULL
CRB2	286204	genome.wustl.edu	37	9	126125431	126125431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173689.5	+1	validated	p.D128N	1.000	10	0%	13	46.2%	0	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
MIR601	693186	genome.wustl.edu	37	9	126164872	126164872	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385256	-1	known	NULL	0.015	68	0%	45	13.3%	0	-	-	-	-	-
LHX2	9355	genome.wustl.edu	37	9	126783453	126783453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004789.3	+1	reviewed	p.R268H	1.000	65	0%	60	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
SCAI	286205	genome.wustl.edu	37	9	127762230	127762230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173690.4	-1	reviewed	p.R418Q	1.000	339	0%	260	25.4%	4	50%	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	NULL
SCAI	286205	genome.wustl.edu	37	9	127818262	127818262	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173690.4	-1	reviewed	p.I64	1.000	109	0%	83	34.9%	10	50%	-	-	-	NULL
RABEPK	10244	genome.wustl.edu	37	9	127996207	127996207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005833.3	+1	validated	p.M356T	1.000	279	0%	255	35.7%	33	30.3%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128065089	128065089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015635.2	+1	validated	p.R338Q	1.000	229	0%	202	28.7%	2	100%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_RasGAP,superfamily_Rho_GAP
GAPVD1	26130	genome.wustl.edu	37	9	128070148	128070148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015635.2	+1	validated	p.R477Q	1.000	298	0%	212	36.8%	2	100%	probably_damaging(0.999)	tolerated(0.52)	deleterious(0.499)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128097514	128097514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015635.2	+1	validated	p.R831I	0.843	110	0%	86	48.8%	0	-	possibly_damaging(0.903)	deleterious(0.03)	deleterious(0.722)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128116964	128116964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015635.2	+1	validated	p.R1228C	0.996	270	0%	182	29.7%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZBTB43	23099	genome.wustl.edu	37	9	129594921	129594921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135776.1	+1	validated	p.R45W	1.000	96	0%	113	29.2%	2	100%	possibly_damaging(0.693)	deleterious(0)	deleterious(0.693)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
ZBTB34	403341	genome.wustl.edu	37	9	129643069	129643069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099270.1	+1	validated	p.R460H	1.000	38	0%	52	28.8%	0	-	benign(0.016)	tolerated(0.16)	neutral(0.060)	NULL
GARNL3	84253	genome.wustl.edu	37	9	130075763	130075763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032293.4	+1	validated	p.F121L	1.000	243	0%	199	34.7%	1	100%	possibly_damaging(0.942)	tolerated(0.2)	neutral(0.436)	superfamily_Rap/Ran-GAP (Pfam 02145)
ZNF79	7633	genome.wustl.edu	37	9	130207398	130207398	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007135.2	+1	validated	p.Y473	0.000	355	0%	375	30.9%	4	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
STXBP1	6812	genome.wustl.edu	37	9	130453079	130453079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001032221.3	+1	reviewed	p.Q576H	1.000	427	0%	413	30%	0	-	benign(0.02)	tolerated(0.07)	neutral(0.320)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
SLC25A25	114789	genome.wustl.edu	37	9	130868667	130868667	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000466983	+1	known	p.P52S	0.983	27	0%	25	16%	5	20%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SWI5	375757	genome.wustl.edu	37	9	131046827	131046827	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000418976	+1	known	p.R83*	0.001	70	0%	92	25%	35	22.8%	-	-	-	HMMPfam_Swi5
URM1	81605	genome.wustl.edu	37	9	131140323	131140323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135947.1	+1	validated	p.A15V	0.793	61	1.6%	58	31%	68	29.4%	benign(0.236)	tolerated(0.66)	neutral(0.026)	HMMPfam_Urm1
SPTAN1	6709	genome.wustl.edu	37	9	131394971	131394971	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130438.1	+1	validated	p.A2378	0.875	60	0%	45	35.6%	231	33.3%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
WDR34	89891	genome.wustl.edu	37	9	131396588	131396588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052844.3	-1	validated	p.S430L	0.991	55	0%	32	18.8%	319	43.2%	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMSmart_WD40,superfamily_WD40_like
SET	6418	genome.wustl.edu	37	9	131453458	131453458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122821.1	+1	validated	p.Q41P	1.000	51	0%	48	18.8%	242	39.6%	possibly_damaging(0.872)	tolerated(0.18)	neutral(0.395)	NULL
ZER1	10444	genome.wustl.edu	37	9	131514964	131514964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006336.2	-1	provisional	p.A304V	0.838	34	0%	41	41.5%	27	33.3%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
TBC1D13	54662	genome.wustl.edu	37	9	131565687	131565687	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018201.3	+1	validated	p.I234	1.000	76	0%	77	27.3%	12	8.3%	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
NUP188	23511	genome.wustl.edu	37	9	131719234	131719234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015354.1	+1	validated	p.L84I	1.000	134	0%	163	35%	3	33.3%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_Nup188
ASB6	140459	genome.wustl.edu	37	9	132400297	132400297	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017873.2	-1	reviewed	p.F346	0.932	79	0%	54	33.3%	18	38.8%	-	-	-	NULL
TOR1B	27348	genome.wustl.edu	37	9	132566493	132566493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014506.1	+1	provisional	p.G114D	1.000	107	0%	68	30.9%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_Torsin,superfamily_SSF52540
QRFP	347148	genome.wustl.edu	37	9	133769001	133769001	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198180.1	-1	validated	p.Q75	0.724	41	0%	31	51.6%	0	-	-	-	-	NULL
FIBCD1	84929	genome.wustl.edu	37	9	133780752	133780752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145106.1	-1	validated	p.H332R	1.000	10	0%	14	50%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
LAMC3	10319	genome.wustl.edu	37	9	133914592	133914592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006059.3	+1	reviewed	p.R414C	0.994	35	0%	21	38.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196
LAMC3	10319	genome.wustl.edu	37	9	133932493	133932493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006059.3	+1	reviewed	p.P706H	1.000	87	0%	67	34.3%	7	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	PatternScan_EGF_LAM_1
NUP214	8021	genome.wustl.edu	37	9	134049454	134049454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005085.2	+1	reviewed	p.R969Q	1.000	204	0%	199	35.7%	7	0%	possibly_damaging(0.943)	tolerated(0.38)	neutral(0.405)	NULL
NUP214	8021	genome.wustl.edu	37	9	134073647	134073647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005085.2	+1	reviewed	p.S1589F	0.014	121	0%	129	16.3%	19	21%	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
NUP214	8021	genome.wustl.edu	37	9	134106040	134106040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005085.2	+1	reviewed	p.T2033I	0.871	78	0%	51	27.5%	29	79.3%	possibly_damaging(0.911)	tolerated(0.09)	deleterious(0.659)	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134346274	134346274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013318.3	+1	validated	p.D671N	1.000	53	0%	44	36.4%	14	42.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134357806	134357806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013318.3	+1	validated	p.E1678K	1.000	284	0%	148	25.7%	16	56.2%	probably_damaging(0.959)	tolerated(0.17)	neutral(0.462)	NULL
SETX	23064	genome.wustl.edu	37	9	135150788	135150788	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015046.5	-1	reviewed	p.E2319*	1.000	205	0%	198	29.3%	9	11.1%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SETX	23064	genome.wustl.edu	37	9	135204702	135204702	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015046.5	-1	reviewed	p.S761	0.031	541	0%	417	34.5%	2	0%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135205315	135205315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015046.5	-1	reviewed	p.R557L	0.946	314	0%	259	34.7%	0	-	possibly_damaging(0.809)	deleterious(0)	deleterious(0.749)	NULL
TTF1	7270	genome.wustl.edu	37	9	135266069	135266069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007344.2	-1	validated	p.R713W	0.998	412	0%	291	22%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SANT
GTF3C4	9329	genome.wustl.edu	37	9	135553528	135553528	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012204.2	+1	validated	p.C174	0.970	112	0%	94	34%	2	0%	-	-	-	NULL
GFI1B	8328	genome.wustl.edu	37	9	135864540	135864540	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004188.4	+1	validated	p.F201	0.991	82	0%	55	18.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RALGDS	5900	genome.wustl.edu	37	9	135983476	135983476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006266.2	-1	validated	p.P366S	0.990	25	0%	16	43.8%	18	50%	benign(0.227)	tolerated(1)	neutral(0.022)	superfamily_Ras GEF
RALGDS	5900	genome.wustl.edu	37	9	135983499	135983499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006266.2	-1	validated	p.V358A	0.000	28	0%	15	33.3%	19	47.3%	benign(0.005)	tolerated(0.35)	neutral(0.021)	superfamily_Ras GEF
RPL7A	6130	genome.wustl.edu	37	9	136217157	136217157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000972.2	+1	reviewed	p.D160N	1.000	23	0%	26	30.8%	2653	40.2%	possibly_damaging(0.814)	tolerated(0.07)	deleterious(0.627)	HMMPfam_Ribosomal_L7Ae,superfamily_L30e-like
C9orf96	169436	genome.wustl.edu	37	9	136259426	136259426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153710.3	+1	validated	p.R198C	0.000	41	0%	26	38.5%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
REXO4	57109	genome.wustl.edu	37	9	136278001	136278001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020385.2	-1	validated	p.E205K	1.000	32	0%	40	35%	11	27.2%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
VAV2	7410	genome.wustl.edu	37	9	136804238	136804238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134398.1	-1	reviewed	p.R103Q	1.000	103	0%	104	31.7%	12	50%	probably_damaging(0.984)	tolerated(0.42)	neutral(0.445)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
KCNT1	57582	genome.wustl.edu	37	9	138649176	138649176	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020822.2	+1	validated	p.I236	1.000	35	0%	27	37%	0	-	-	-	-	superfamily_SSF81324
MAN1B1	11253	genome.wustl.edu	37	9	140002967	140002967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016219.3	+1	validated	p.D675G	0.427	113	0%	47	21.3%	119	41.1%	possibly_damaging(0.511)	deleterious(0.02)	deleterious(0.554)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
NDOR1	27158	genome.wustl.edu	37	9	140106982	140106982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144026.1	+1	reviewed	p.N81S	1.000	47	0%	77	29.9%	6	33.3%	benign(0)	tolerated(1)	-	HMMPfam_Flavodoxin_1,superfamily_SSF52218
EHMT1	79813	genome.wustl.edu	37	9	140693268	140693268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000460843	+1	known	p.A837T	1.000	128	0%	130	30.8%	22	31.8%	benign(0.019)	tolerated(0.32)	neutral(0.025)	HMMPfam_Ank,superfamily_Ankyrin repeat
CACNA1B	774	genome.wustl.edu	37	9	141012422	141012422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000718.2	+1	validated	p.K1934N	1.000	24	0%	14	35.7%	0	-	benign(0.218)	deleterious(0.04)	neutral(0.370)	NULL
DIP2C	22982	genome.wustl.edu	37	10	461747	461747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014974.2	-1	reviewed	p.R274Q	0.999	436	0.5%	377	22.3%	2	0%	possibly_damaging(0.883)	tolerated(0.28)	neutral(0.376)	NULL
WDR37	22884	genome.wustl.edu	37	10	1149581	1149581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014023.3	+1	reviewed	p.E256K	1.000	116	0.9%	95	32.6%	6	33.3%	benign(0.167)	tolerated(0.78)	neutral(0.016)	superfamily_WD40_like
WDR37	22884	genome.wustl.edu	37	10	1170271	1170271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014023.3	+1	reviewed	p.R406H	1.000	100	0%	82	32.9%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
AKR1E2	83592	genome.wustl.edu	37	10	4875595	4875595	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040177.1	+1	provisional	p.S87R	0.173	120	0%	128	11.7%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
AKR1C4	1109	genome.wustl.edu	37	10	5258755	5258755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001818.2	+1	reviewed	p.F310V	0.003	42	0%	28	35.7%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	superfamily_NAD(P)-linked oxidoreductase
GDI2	2665	genome.wustl.edu	37	10	5827952	5827952	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001494.3	-1	reviewed	p.F150	0.629	328	0.3%	292	26.4%	237	39.6%	-	-	-	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
ANKRD16	54522	genome.wustl.edu	37	10	5926004	5926004	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009941.2	-1	validated	p.G205	0.920	72	0%	61	29.5%	6	33.3%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FBXO18	84893	genome.wustl.edu	37	10	5937150	5937150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032807.3	+1	reviewed	p.M52L	0.000	41	0%	38	18.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
PRKCQ	5588	genome.wustl.edu	37	10	6525477	6525477	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000397178	-1	known	p.D141G	0.002	275	0.7%	228	32.9%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
SFMBT2	57713	genome.wustl.edu	37	10	7214496	7214496	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029880.1	-1	provisional	p.R704	1.000	29	0%	32	56.2%	0	-	-	-	-	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7218021	7218021	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029880.1	-1	provisional	p.L639	0.570	189	0%	153	30.1%	0	-	-	-	-	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7269821	7269821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029880.1	-1	provisional	p.R400Q	1.000	125	0%	127	29.1%	1	0%	probably_damaging(0.988)	tolerated(0.37)	neutral(0.457)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
SFMBT2	57713	genome.wustl.edu	37	10	7409762	7409762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029880.1	-1	provisional	p.T95	0.999	37	0%	52	36.5%	0	-	-	-	-	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
SFMBT2	57713	genome.wustl.edu	37	10	7423773	7423773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029880.1	-1	provisional	p.D30Y	0.015	124	0%	103	31.1%	0	-	possibly_damaging(0.46)	deleterious(0.04)	deleterious(0.500)	NULL
ITIH5	80760	genome.wustl.edu	37	10	7618968	7618968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030569.5	-1	validated	p.D476N	1.000	84	0%	55	20%	95	53.6%	benign(0.395)	deleterious(0.01)	deleterious(0.532)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ITIH2	3698	genome.wustl.edu	37	10	7751048	7751048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002216.2	+1	validated	p.A86T	1.000	230	0%	253	33.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_VIT,HMMPfam_VIT
ITIH2	3698	genome.wustl.edu	37	10	7771917	7771917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002216.2	+1	validated	p.E428K	1.000	160	0%	168	31.5%	0	-	possibly_damaging(0.773)	deleterious(0.03)	deleterious(0.652)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
KIN	22944	genome.wustl.edu	37	10	7801942	7801942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012311.2	-1	reviewed	p.L344I	0.970	94	0%	62	14.5%	9	11.1%	benign(0.034)	tolerated(0.29)	neutral(0.031)	NULL
USP6NL	9712	genome.wustl.edu	37	10	11504658	11504658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080491.2	-1	validated	p.S774G	0.000	138	0%	129	30.2%	8	50%	benign(0.032)	tolerated(0.07)	neutral(0.321)	NULL
UPF2	26019	genome.wustl.edu	37	10	12070817	12070817	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015542.2	-1	reviewed	p.E358*	1.000	178	0%	158	36.1%	3	0%	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
DHTKD1	55526	genome.wustl.edu	37	10	12126729	12126729	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018706.5	+1	validated	p.S167	0.002	296	0%	306	30.4%	2	0%	-	-	-	superfamily_Thiamin diphosphate-binding fold (THDP-binding)
OPTN	10133	genome.wustl.edu	37	10	13152325	13152325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008211.1	+1	reviewed	p.S73L	0.995	63	0%	65	27.7%	18	0%	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	NULL
OPTN	10133	genome.wustl.edu	37	10	13166106	13166106	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008211.1	+1	reviewed	p.E332*	1.000	66	0%	66	24.2%	14	0%	-	-	-	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13708240	13708240	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018027.3	-1	validated	p.N487T	1.000	90	0%	88	22.7%	0	-	benign(0.051)	tolerated(0.19)	neutral(0.053)	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13900896	13900896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018027.3	-1	validated	p.R21Q	1.000	471	0%	462	16.2%	0	-	probably_damaging(0.994)	tolerated(0.27)	deleterious(0.486)	HMMSmart_B41,superfamily_SSF54236
FAM107B	83641	genome.wustl.edu	37	10	14563916	14563916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031453.2	-1	predicted	p.K252N	0.999	506	0%	374	31.3%	20	40%	benign(0.399)	tolerated(0.07)	neutral(0.448)	HMMPfam_DUF1151
CDNF	441549	genome.wustl.edu	37	10	14870149	14870149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029954.2	-1	validated	p.R80C	1.000	181	0%	196	35.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Armet
SUV39H2	79723	genome.wustl.edu	37	10	14943176	14943176	+	Silent	SNP	C	C	T	rs61730323	byCluster;byFrequency;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000358298	+1	known	p.S113L	0.368	174	0%	98	22.4%	12	25%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
DCLRE1C	64421	genome.wustl.edu	37	10	14976391	14976391	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033855.1	-1	reviewed	p.E222D	0.956	501	0%	541	25.3%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
OLAH	55301	genome.wustl.edu	37	10	15091764	15091764	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018324.2	+1	validated	p.E55*	1.000	85	0%	80	38.8%	0	-	-	-	-	NULL
OLAH	55301	genome.wustl.edu	37	10	15107753	15107753	+	Splice_Site	SNP	G	G	A	rs141945357	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018324.2	+1	validated	e6+1	0.986	107	0%	104	17.3%	0	-	-	-	-	-
ACBD7	414149	genome.wustl.edu	37	10	15120752	15120752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039844.2	-1	validated	p.A44V	0.863	105	0%	124	32.3%	0	-	benign(0.148)	tolerated(0.09)	neutral(0.309)	HMMPfam_ACBP,superfamily_Acyl-CoA binding protein
FAM171A1	221061	genome.wustl.edu	37	10	15256175	15256175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010924.1	-1	validated	p.S471Y	0.158	117	0%	95	35.8%	12	50%	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	HMMPfam_UPF0560
CUBN	8029	genome.wustl.edu	37	10	16877048	16877048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081.3	-1	reviewed	p.E3443K	1.000	305	0%	262	32.1%	4	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16948342	16948342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081.3	-1	reviewed	p.R2591K	0.044	116	0%	110	30%	0	-	benign(0)	tolerated(0.93)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16981002	16981002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081.3	-1	reviewed	p.D1898G	1.000	190	0%	150	26%	0	-	probably_damaging(0.996)	tolerated(0.37)	deleterious(0.481)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16981021	16981021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081.3	-1	reviewed	p.G1892S	0.861	195	0%	153	34%	0	-	possibly_damaging(0.767)	tolerated(0.1)	deleterious(0.571)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17087053	17087053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081.3	-1	reviewed	p.D1209Y	0.790	185	0%	122	23%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17110681	17110681	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081.3	-1	reviewed	p.F905C	0.503	393	0.3%	335	34.9%	0	-	benign(0.11)	tolerated(0.17)	neutral(0.068)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17113967	17113967	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081.3	-1	reviewed	p.R769*	1.000	109	0.9%	99	27.3%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRDMT1	1787	genome.wustl.edu	37	10	17199528	17199528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004412.5	-1	reviewed	p.L267I	0.913	126	0%	75	28%	7	71.4%	possibly_damaging(0.455)	tolerated(0.15)	neutral(0.390)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
VIM	7431	genome.wustl.edu	37	10	17271740	17271740	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003380.3	+1	reviewed	p.L107	1.000	6	0.000	7	0.571	2097	25.2%	-	-	-	HMMPfam_Filament
VIM	7431	genome.wustl.edu	37	10	17275817	17275817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003380.3	+1	reviewed	p.D257N	1.000	68	0%	130	12.3%	2506	30.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Filament
ST8SIA6	338596	genome.wustl.edu	37	10	17363045	17363045	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004470.1	-1	validated	p.F343	0.996	392	0%	292	15.8%	0	-	-	-	-	HMMPfam_Glyco_transf_29
PTPLA	9200	genome.wustl.edu	37	10	17636374	17636374	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014241.3	-1	reviewed	p.F205C	1.000	123	0%	112	34.8%	6	16.6%	possibly_damaging(0.686)	deleterious(0.01)	deleterious(0.651)	HMMPfam_PTPLA
MRC1	4360	genome.wustl.edu	37	10	17898264	17898264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009567.1	+1	reviewed	p.A474T	1.000	29	0%	25	24%	0	-	possibly_damaging(0.729)	tolerated(0.44)	neutral(0.278)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
MRC1	4360	genome.wustl.edu	37	10	17908714	17908714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009567.1	+1	reviewed	p.E643K	0.040	180	0%	156	32.7%	0	-	benign(0.001)	tolerated(0.84)	neutral(0.001)	NULL
SLC39A12	221074	genome.wustl.edu	37	10	18266889	18266889	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145195.1	+1	validated	p.K270N	0.004	330	0%	294	33.3%	0	-	benign(0.143)	tolerated(0.51)	neutral(0.021)	NULL
SLC39A12	221074	genome.wustl.edu	37	10	18270270	18270270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145195.1	+1	validated	p.E318D	1.000	102	0%	112	25.9%	0	-	benign(0.002)	tolerated(0.63)	neutral(0.004)	NULL
CACNB2	783	genome.wustl.edu	37	10	18789794	18789794	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201596.2	+1	reviewed	p.I170	1.000	161	0%	143	55.9%	0	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
NEBL	10529	genome.wustl.edu	37	10	21157633	21157633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006393.2	-1	reviewed	p.D215A	1.000	347	0%	265	33.6%	0	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_Nebulin,HMMSmart_SM00227
C10orf114	399726	genome.wustl.edu	37	10	21784594	21784594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010911.2	-1	validated	p.T116A	0.000	66	0%	43	18.6%	0	-	benign(0.035)	-	-	NULL
C10orf140	387640	genome.wustl.edu	37	10	21804038	21804038	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207371.3	-1	validated	p.K905T	1.000	26	0%	26	34.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
C10orf140	387640	genome.wustl.edu	37	10	21804799	21804799	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207371.3	-1	validated	p.S651	0.000	67	0%	86	25.6%	0	-	-	-	-	NULL
DNAJC1	64215	genome.wustl.edu	37	10	22171227	22171227	+	Missense_Mutation	SNP	C	C	A	rs191455803	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022365.3	-1	provisional	p.R321L	0.978	223	0%	147	29.9%	47	48.9%	possibly_damaging(0.652)	tolerated(0.08)	deleterious(0.529)	NULL
SPAG6	9576	genome.wustl.edu	37	10	22657587	22657587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012443.2	+1	reviewed	p.Y151C	1.000	81	0%	57	22.8%	0	-	benign(0.009)	tolerated(0.16)	neutral(0.060)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ARMC3	219681	genome.wustl.edu	37	10	23295876	23295876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173081.3	+1	validated	p.R599W	0.612	325	0%	254	23.6%	18	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTF1A	256297	genome.wustl.edu	37	10	23482821	23482821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178161.2	+1	reviewed	p.E325K	1.000	179	0%	132	37.1%	0	-	benign(0.261)	deleterious(0)	deleterious(0.472)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24874495	24874495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020824.3	-1	validated	p.E1575K	0.998	251	0%	270	31.5%	18	38.8%	benign(0.063)	tolerated(0.16)	neutral(0.064)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24909027	24909027	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020824.3	-1	validated	p.F599L	0.137	363	0%	353	35.4%	4	0%	benign(0)	tolerated(1)	-	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24909344	24909344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020824.3	-1	validated	p.R494C	0.994	336	0.3%	297	30.6%	5	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24909834	24909834	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020824.3	-1	validated	p.I330M	0.942	248	0%	210	28.1%	3	0%	benign(0.083)	tolerated(0.23)	neutral(0.048)	NULL
PRTFDC1	56952	genome.wustl.edu	37	10	25144270	25144270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020200.5	-1	provisional	p.R177K	0.314	253	0%	232	36.6%	3	0%	benign(0.019)	tolerated(0.51)	neutral(0.010)	superfamily_PRTase-like
PRTFDC1	56952	genome.wustl.edu	37	10	25226197	25226197	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020200.5	-1	provisional	p.L85	0.474	193	0%	128	36.7%	0	-	-	-	-	HMMPfam_Pribosyltran,superfamily_PRTase-like
THNSL1	79896	genome.wustl.edu	37	10	25313873	25313873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024838.4	+1	validated	p.R574Q	1.000	200	0%	209	28.2%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
THNSL1	79896	genome.wustl.edu	37	10	25314275	25314275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024838.4	+1	validated	p.L708S	0.994	242	0%	191	25.7%	7	28.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GPR158	57512	genome.wustl.edu	37	10	25464806	25464806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020752.2	+1	validated	p.D153N	1.000	30	0%	23	43.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR158	57512	genome.wustl.edu	37	10	25877944	25877944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020752.2	+1	validated	p.L588V	0.996	118	0%	112	29.5%	0	-	possibly_damaging(0.868)	tolerated(0.06)	deleterious(0.659)	HMMPfam_7tm_3
GPR158	57512	genome.wustl.edu	37	10	25888112	25888112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020752.2	+1	validated	p.R1186I	0.931	141	0%	98	27.6%	0	-	possibly_damaging(0.462)	deleterious(0)	deleterious(0.596)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26414479	26414479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017433.4	+1	reviewed	p.L686I	1.000	241	0%	209	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26432476	26432476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017433.4	+1	reviewed	p.S788P	0.996	118	0%	110	32.7%	0	-	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26463050	26463050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017433.4	+1	reviewed	p.E1286G	0.712	215	0%	135	21.5%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_SSF52540
GAD2	2572	genome.wustl.edu	37	10	26581465	26581465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000818.2	+1	reviewed	p.K486N	1.000	187	0%	157	28%	0	-	benign(0.179)	deleterious(0.01)	neutral(0.422)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
APBB1IP	54518	genome.wustl.edu	37	10	26800763	26800763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019043.3	+1	validated	p.L207I	1.000	126	0.8%	91	36.3%	5	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_RA,HMMSmart_RA
APBB1IP	54518	genome.wustl.edu	37	10	26822374	26822374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019043.3	+1	validated	p.Y274H	1.000	43	0%	35	42.9%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ABI1	10006	genome.wustl.edu	37	10	27066126	27066126	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005470.3	-1	validated	p.G110	0.998	185	0%	151	30.5%	26	53.8%	-	-	-	HMMPfam_Abi_HHR
ANKRD26	22852	genome.wustl.edu	37	10	27324528	27324528	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014915.2	-1	validated	p.E951*	0.998	234	0.4%	160	35.6%	2	0%	-	-	-	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27389017	27389017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014915.2	-1	validated	p.N80S	0.529	41	0%	43	32.6%	0	-	benign(0.005)	tolerated(0.12)	neutral(0.261)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
YME1L1	10730	genome.wustl.edu	37	10	27412525	27412525	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139312.1	-1	reviewed	p.F408L	1.000	352	0%	304	28%	43	32.5%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
YME1L1	10730	genome.wustl.edu	37	10	27415657	27415657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139312.1	-1	reviewed	p.K363T	1.000	86	0%	72	22.2%	49	46.9%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_P-loop containing nucleoside triphosphate hydrolases
YME1L1	10730	genome.wustl.edu	37	10	27425211	27425211	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139312.1	-1	reviewed	p.F235	0.909	131	0%	131	29.8%	40	37.5%	-	-	-	NULL
MASTL	84930	genome.wustl.edu	37	10	27454096	27454096	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032844.3	+1	reviewed	p.G219	1.000	78	0%	60	33.3%	5	40%	-	-	-	superfamily_Kinase_like
MASTL	84930	genome.wustl.edu	37	10	27458959	27458959	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032844.3	+1	reviewed	p.T357	0.000	182	0%	164	31.1%	2	0%	-	-	-	superfamily_Kinase_like
MASTL	84930	genome.wustl.edu	37	10	27462069	27462069	+	Missense_Mutation	SNP	C	C	T	rs181913798	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032844.3	+1	reviewed	p.S715L	0.841	346	0%	360	28.3%	18	0%	benign(0.028)	tolerated(0.45)	neutral(0.013)	superfamily_Kinase_like
ACBD5	91452	genome.wustl.edu	37	10	27486317	27486317	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_024150.1	-1	validated	NULL	0.996	70	0%	59	30.5%	10	50%	-	-	-	-
LOC100288039	100288039	genome.wustl.edu	37	10	27551951	27551951	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002342965.1	+1	model	p.T9	0.087	46	0%	61	34.4%	0	-	-	-	-	NULL
PTCHD3	374308	genome.wustl.edu	37	10	27702265	27702265	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001034842.3	-1	validated	p.I305	0.000	110	0.9%	94	31.9%	0	-	-	-	-	HMMPfam_Patched
RAB18	22931	genome.wustl.edu	37	10	27822881	27822881	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021252.3	+1	provisional	p.E135*	1.000	266	0%	232	32.8%	40	0%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MKX	283078	genome.wustl.edu	37	10	28023450	28023450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173576.2	-1	validated	p.E258G	1.000	206	0%	181	29.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MKX	283078	genome.wustl.edu	37	10	28023559	28023559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173576.2	-1	validated	p.L222V	1.000	181	0%	129	31%	0	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
WAC	51322	genome.wustl.edu	37	10	28884882	28884882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016628.3	+1	reviewed	p.K277N	1.000	283	0%	275	29.1%	40	35%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
SVIL	6840	genome.wustl.edu	37	10	29782172	29782172	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021738.2	-1	reviewed	p.F1330	0.999	35	0%	43	25.6%	15	13.3%	-	-	-	NULL
MTPAP	55149	genome.wustl.edu	37	10	30602741	30602741	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018109.3	-1	validated	p.R516*	0.000	254	0%	254	26%	17	35.2%	-	-	-	superfamily_PAP/OAS1 substrate-binding domain
ENSG00000234814	0	genome.wustl.edu	37	10	30986443	30986443	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000435645	+1	known	NULL	0.996	42	0%	35	14.3%	0	-	-	-	-	-
LOC645954	645954	genome.wustl.edu	37	10	31001565	31001565	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_017086.3	+1	model	NULL	1.000	64	0%	77	16.9%	0	-	-	-	-	-
LOC645954	645954	genome.wustl.edu	37	10	31005969	31005969	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_017086.3	+1	model	NULL	0.823	61	0%	87	19.5%	12	0%	-	-	-	-
ZNF438	220929	genome.wustl.edu	37	10	31138480	31138480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143766.1	-1	validated	p.S285Y	0.639	258	0%	206	30.6%	0	-	possibly_damaging(0.91)	deleterious(0.01)	deleterious(0.768)	NULL
ZEB1	6935	genome.wustl.edu	37	10	31809685	31809685	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030751.5	+1	reviewed	p.I474	1.000	300	0%	216	31.5%	1	0%	-	-	-	NULL
ZEB1	6935	genome.wustl.edu	37	10	31810044	31810044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030751.5	+1	reviewed	p.S594Y	1.000	267	0%	190	27.9%	11	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_HOX
ZEB1	6935	genome.wustl.edu	37	10	31812973	31812973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030751.5	+1	reviewed	p.A905D	1.000	163	0%	160	40%	1	0%	benign(0.405)	deleterious(0)	deleterious(0.575)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZEB1	6935	genome.wustl.edu	37	10	31815926	31815926	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030751.5	+1	reviewed	p.E1037*	1.000	105	0%	108	33.3%	6	0%	-	-	-	NULL
ARHGAP12	94134	genome.wustl.edu	37	10	32097936	32097936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018287.5	-1	provisional	p.F750C	1.000	69	0%	71	39.4%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
KIF5B	3799	genome.wustl.edu	37	10	32317364	32317364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004521.2	-1	validated	p.D573Y	1.000	199	0%	149	24.8%	19	21%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
ITGB1	3688	genome.wustl.edu	37	10	33208968	33208968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033667.2	-1	reviewed	p.K438N	0.999	462	0%	361	23.5%	252	28.5%	benign(0.001)	tolerated(0.42)	neutral(0.014)	HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF69179
NRP1	8829	genome.wustl.edu	37	10	33475280	33475280	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003873.5	-1	validated	p.V733	0.933	116	0%	125	25.6%	34	38.2%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
NRP1	8829	genome.wustl.edu	37	10	33481266	33481266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003873.5	-1	validated	p.V669M	0.990	404	0%	382	26.4%	36	16.6%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_MAM,HMMSmart_SM00137
NRP1	8829	genome.wustl.edu	37	10	33559651	33559651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003873.5	-1	validated	p.E128K	1.000	113	0%	116	38.8%	11	45.4%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PARD3	56288	genome.wustl.edu	37	10	34558723	34558723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019619.3	-1	validated	p.M1097T	0.571	121	0%	100	31%	15	66.6%	benign(0.008)	tolerated(0.73)	neutral(0.002)	NULL
CREM	1390	genome.wustl.edu	37	10	35467899	35467899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181571.1	+1	reviewed	p.R84Q	1.000	81	0%	54	22.2%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_pKID
NAMPTL	646309	genome.wustl.edu	37	10	36811891	36811891	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000440465	-1	known	p.L424	1.000	176	0%	133	30.8%	1	0%	-	-	-	HMMPfam_NAPRTase
NAMPTL	646309	genome.wustl.edu	37	10	36812212	36812212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000440465	-1	known	p.E317D	0.991	169	0%	142	15.5%	30	0%	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMPfam_NAPRTase
ANKRD30A	91074	genome.wustl.edu	37	10	37419224	37419224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052997.2	+1	validated	p.L87P	1.000	51	0%	29	44.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD30A	91074	genome.wustl.edu	37	10	37433955	37433955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052997.2	+1	validated	p.E420K	0.002	182	0%	198	26.3%	0	-	benign(0.224)	tolerated(0.32)	neutral(0.046)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37451773	37451773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052997.2	+1	validated	p.A611T	0.314	183	0%	184	35.3%	0	-	benign(0.355)	tolerated(0.64)	neutral(0.116)	NULL
LOC646360	646360	genome.wustl.edu	37	10	37627221	37627221	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078419.1	+1	model	NULL	1.000	118	0%	138	39.9%	0	-	-	-	-	-
LOC646360	646360	genome.wustl.edu	37	10	37627599	37627599	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078419.1	+1	model	NULL	0.170	96	0%	117	28.2%	0	-	-	-	-	-
LOC340947	340947	genome.wustl.edu	37	10	38369347	38369347	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001131609.2	-1	model	p.P196	1.000	83	0%	76	32.9%	0	-	-	-	-	HMMPfam_Paf67
LOC340947	340947	genome.wustl.edu	37	10	38369624	38369624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001131609.2	-1	model	p.R104M	1.000	74	0%	65	29.2%	0	-	-	-	-	HMMPfam_Paf67
ZNF37A	7587	genome.wustl.edu	37	10	38406783	38406783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007094.2	+1	validated	p.R235I	0.999	254	0.4%	231	26.8%	4	50%	benign(0.43)	deleterious(0.03)	deleterious(0.504)	NULL
BMS1	9790	genome.wustl.edu	37	10	43326443	43326443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014753.3	+1	reviewed	p.R1250W	1.000	42	0%	38	34.2%	84	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RASGEF1A	221002	genome.wustl.edu	37	10	43696334	43696334	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000374455	-1	known	p.E56*	1.000	30	0%	21	23.8%	1	100%	benign(0.242)	tolerated(0.35)	neutral(0.045)	superfamily_Ras GEF
HNRNPF	3185	genome.wustl.edu	37	10	43882993	43882993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098204.1	-1	reviewed	p.R114W	0.991	132	0%	115	27.8%	255	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF485	220992	genome.wustl.edu	37	10	44111818	44111818	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145312.3	+1	validated	p.T109	0.000	71	0%	77	32.5%	0	-	-	-	-	NULL
CXCL12	6387	genome.wustl.edu	37	10	44871476	44871476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033886.2	-1	reviewed	p.R91C	1.000	240	0%	124	29.8%	1	0%	unknown(0)	deleterious(0)	-	NULL
TMEM72	643236	genome.wustl.edu	37	10	45430513	45430513	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001123376.1	+1	provisional	p.T253	0.007	70	0%	57	31.6%	0	-	-	-	-	NULL
RASSF4	83937	genome.wustl.edu	37	10	45484728	45484728	+	Missense_Mutation	SNP	G	G	A	rs148393910	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032023.3	+1	reviewed	p.V180M	1.000	44	0%	42	23.8%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RA,HMMSmart_SM00314
ALOX5	240	genome.wustl.edu	37	10	45891348	45891348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000698.2	+1	reviewed	p.R132Q	1.000	157	0%	112	33%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ZFAND4	93550	genome.wustl.edu	37	10	46147459	46147459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128324.1	-1	validated	p.K95E	1.000	87	0%	61	26.2%	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
SYT15	83849	genome.wustl.edu	37	10	46967443	46967443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031912.3	-1	reviewed	p.E212K	0.998	105	0%	61	24.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ASAH2C	653365	genome.wustl.edu	37	10	48020522	48020522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000426610	-1	known	p.Q328H	0.887	270	0%	303	29.4%	0	-	probably_damaging(0.97)	tolerated(0.37)	neutral(0.431)	HMMPfam_Ceramidase_alk
ZNF488	118738	genome.wustl.edu	37	10	48371011	48371011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153034.2	+1	provisional	p.R160I	1.000	91	0%	49	32.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49379223	49379223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001018071.3	-1	reviewed	p.K1084N	0.999	303	0%	241	19.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,superfamily_PDZ domain-like
FRMPD2	143162	genome.wustl.edu	37	10	49431197	49431197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001018071.3	-1	reviewed	p.K429Q	0.999	331	0%	315	27.3%	1	0%	possibly_damaging(0.488)	deleterious(0.04)	deleterious(0.511)	HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_Ubiquitin-like
MAPK8	5599	genome.wustl.edu	37	10	49617971	49617971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139047.1	+1	reviewed	p.F101S	1.000	297	0%	278	30.9%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ARHGAP22	58504	genome.wustl.edu	37	10	49667846	49667846	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021226.2	-1	validated	p.V180	1.000	46	0%	53	26.4%	1	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
LRRC18	474354	genome.wustl.edu	37	10	50121647	50121647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001006939.3	-1	validated	p.S185L	0.000	92	0%	130	25.4%	0	-	benign(0.159)	tolerated(0.2)	neutral(0.063)	NULL
VSTM4	196740	genome.wustl.edu	37	10	50315954	50315954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031746.3	-1	validated	p.V48I	0.990	45	0%	38	28.9%	2	0%	benign(0.035)	tolerated(0.22)	neutral(0.044)	HMMSmart_SM00409,superfamily_Immunoglobulin
ERCC6	2074	genome.wustl.edu	37	10	50678569	50678569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000124.2	-1	reviewed	p.S1146I	0.001	518	0%	427	32.6%	4	50%	benign(0.069)	tolerated(0.09)	neutral(0.301)	NULL
PGBD3	267004	genome.wustl.edu	37	10	50723687	50723687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170753.2	-1	validated	p.E492K	0.062	303	0%	308	40.9%	2	0%	possibly_damaging(0.936)	deleterious(0.03)	deleterious(0.746)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50732662	50732662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000124.2	-1	reviewed	p.E272K	1.000	169	0%	161	32.3%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
OGDHL	55753	genome.wustl.edu	37	10	50944205	50944205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018245.2	-1	validated	p.D925N	1.000	50	0%	33	24.2%	65	75.3%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
OGDHL	55753	genome.wustl.edu	37	10	50953923	50953923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018245.2	-1	validated	p.D466G	1.000	53	0%	49	20.4%	16	43.7%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_E1_dh,superfamily_SSF52518
AGAP7	653268	genome.wustl.edu	37	10	51465391	51465391	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077685.1	-1	provisional	p.S355	0.999	152	0%	192	13%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
NCOA4	8031	genome.wustl.edu	37	10	51585586	51585586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145260.1	+1	reviewed	p.R578Q	0.967	277	0%	178	24.7%	75	34.6%	possibly_damaging(0.917)	deleterious(0.03)	deleterious(0.732)	NULL
AGAP6	414189	genome.wustl.edu	37	10	51769801	51769801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077665.2	+1	validated	p.L639P	0.997	157	0%	147	19%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
FAM21A	387680	genome.wustl.edu	37	10	51853047	51853047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000314664	+1	known	p.S91L	0.192	451	0%	377	30.8%	4	25%	-	-	-	NULL
SGMS1	259230	genome.wustl.edu	37	10	52103267	52103267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_147156.3	-1	reviewed	p.L203P	1.000	101	0%	78	25.6%	7	42.8%	possibly_damaging(0.879)	deleterious(0)	deleterious(0.787)	NULL
A1CF	29974	genome.wustl.edu	37	10	52580373	52580373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138932.1	-1	reviewed	p.A269V	1.000	114	0%	84	31%	0	-	benign(0.195)	deleterious(0)	neutral(0.463)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
A1CF	29974	genome.wustl.edu	37	10	52595940	52595940	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138932.1	-1	reviewed	p.V166	1.000	520	0%	527	29.8%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DKK1	22943	genome.wustl.edu	37	10	54074812	54074812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012242.2	+1	reviewed	p.A125T	0.998	14	0%	31	25.8%	0	-	probably_damaging(0.977)	tolerated(0.13)	deleterious(0.671)	HMMPfam_Dickkopf_N
PCDH15	65217	genome.wustl.edu	37	10	55780102	55780102	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142763.1	-1	reviewed	p.L872	0.902	374	0%	294	31.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55826564	55826564	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142763.1	-1	reviewed	p.L730V	0.162	107	0%	92	31.5%	0	-	benign(0.102)	tolerated(0.16)	neutral(0.068)	HMMPfam_Cadherin,superfamily_Cadherin-like
IPMK	253430	genome.wustl.edu	37	10	59986882	59986882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152230.3	-1	provisional	p.F99V	0.679	190	0%	163	30.1%	2	50%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_IPK,superfamily_SSF56104
BICC1	80114	genome.wustl.edu	37	10	60556153	60556153	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080512.1	+1	reviewed	p.R411	1.000	148	0%	147	32%	2	0%	-	-	-	NULL
BICC1	80114	genome.wustl.edu	37	10	60558315	60558315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080512.1	+1	reviewed	p.A508V	1.000	407	0.2%	341	29%	3	0%	benign(0.108)	tolerated(0.24)	neutral(0.046)	NULL
ANK3	288	genome.wustl.edu	37	10	61819105	61819105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020987.2	-1	reviewed	p.D4227Y	1.000	214	0%	156	36.5%	11	54.5%	possibly_damaging(0.509)	deleterious(0.02)	deleterious(0.553)	NULL
ANK3	288	genome.wustl.edu	37	10	61829258	61829258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020987.2	-1	reviewed	p.S3794Y	1.000	417	0%	372	28.5%	0	-	benign(0.345)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61832066	61832066	+	Missense_Mutation	SNP	G	G	A	rs78194762		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020987.2	-1	reviewed	p.S2858L	1.000	161	0%	165	38.8%	0	-	benign(0.372)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61842413	61842413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020987.2	-1	reviewed	p.A1428V	1.000	314	0%	327	26.6%	7	71.4%	possibly_damaging(0.744)	tolerated(0.35)	neutral(0.294)	NULL
ANK3	288	genome.wustl.edu	37	10	61894114	61894114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020987.2	-1	reviewed	p.S919L	1.000	91	0%	63	36.5%	7	42.8%	benign(0.003)	tolerated(0.23)	neutral(0.042)	NULL
ANK3	288	genome.wustl.edu	37	10	62023736	62023736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020987.2	-1	reviewed	p.D186N	0.999	94	0%	81	21%	0	-	probably_damaging(0.958)	tolerated(0.22)	neutral(0.444)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TMEM26	219623	genome.wustl.edu	37	10	63188697	63188697	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178505.6	-1	validated	p.E198*	0.765	132	0%	127	30.7%	0	-	-	-	-	HMMPfam_Tmem26
ARID5B	84159	genome.wustl.edu	37	10	63852631	63852631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032199.2	+1	validated	p.S1137A	1.000	254	0%	254	31.9%	4	50%	probably_damaging(0.973)	tolerated(0.09)	deleterious(0.712)	NULL
ZNF365	22891	genome.wustl.edu	37	10	64136636	64136636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199451.2	+1	reviewed	p.M228I	1.000	88	0%	76	28.9%	0	-	possibly_damaging(0.633)	deleterious(0.04)	deleterious(0.570)	NULL
ZNF365	22891	genome.wustl.edu	37	10	64239643	64239643	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199450.2	+1	reviewed	p.A330	0.001	73	0%	67	29.9%	0	-	-	-	-	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64966473	64966473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032776.1	-1	validated	p.K1652N	1.000	120	0%	111	28.8%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRTM3	347731	genome.wustl.edu	37	10	68687255	68687255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178011.3	+1	validated	p.R194Q	1.000	250	0%	195	29.7%	0	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
CTNNA3	29119	genome.wustl.edu	37	10	68940131	68940131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127384.1	-1	validated	p.E331K	1.000	145	0%	139	28.1%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_Vinculin
HERC4	26091	genome.wustl.edu	37	10	69750676	69750676	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022079.2	-1	validated	p.P476	0.985	279	0%	221	26.2%	5	20%	-	-	-	NULL
HERC4	26091	genome.wustl.edu	37	10	69752390	69752390	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022079.2	-1	validated	p.Q373H	1.000	64	0%	45	26.7%	6	16.6%	benign(0.009)	tolerated(0.31)	neutral(0.028)	superfamily_RCC1/BLIP-II
HERC4	26091	genome.wustl.edu	37	10	69785361	69785361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022079.2	-1	validated	p.N284H	1.000	303	0%	245	30.2%	4	50%	probably_damaging(0.991)	tolerated(0.1)	deleterious(0.730)	superfamily_RCC1/BLIP-II
MYPN	84665	genome.wustl.edu	37	10	69926291	69926291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032578.2	+1	validated	p.E614G	0.698	142	0%	135	28.9%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
RUFY2	55680	genome.wustl.edu	37	10	70164501	70164501	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017987.4	-1	validated	p.T70	0.986	113	0%	124	27.4%	0	-	-	-	-	NULL
DNA2	1763	genome.wustl.edu	37	10	70196989	70196989	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080449.1	-1	provisional	p.S561	0.975	201	0%	200	27%	1	0%	-	-	-	NULL
DNA2	1763	genome.wustl.edu	37	10	70209959	70209959	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080449.1	-1	provisional	p.V341	0.560	67	0%	56	30.4%	1	0%	-	-	-	HMMPfam_Dna2
DNA2	1763	genome.wustl.edu	37	10	70227917	70227917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080449.1	-1	provisional	p.R221Q	1.000	93	0%	86	32.6%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_Dna2
DNA2	1763	genome.wustl.edu	37	10	70229826	70229826	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080449.1	-1	provisional	p.N143H	0.997	82	0%	70	28.6%	2	100%	benign(0.159)	tolerated(0.12)	neutral(0.275)	NULL
TET1	80312	genome.wustl.edu	37	10	70332760	70332760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030625.2	+1	validated	p.R222H	0.000	105	0%	117	35.9%	0	-	benign(0.001)	tolerated(1)	-	NULL
ENSG00000247499	0	genome.wustl.edu	37	10	70546266	70546266	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000501160	-1	known	NULL	0.000	43	0%	72	29.2%	0	-	-	-	-	-
STOX1	219736	genome.wustl.edu	37	10	70645939	70645939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130161.2	+1	reviewed	p.R796I	0.000	138	0%	182	29.7%	1	0%	benign(0.263)	tolerated(0.12)	neutral(0.288)	NULL
SUPV3L1	6832	genome.wustl.edu	37	10	70968397	70968397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003171.3	+1	provisional	p.R656Q	1.000	162	0%	102	16.7%	28	21.4%	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	NULL
HKDC1	80201	genome.wustl.edu	37	10	71007146	71007146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025130.3	+1	validated	p.E354D	1.000	127	0%	97	18.6%	2	50%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain
HK1	3098	genome.wustl.edu	37	10	71142421	71142421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033497.2	+1	reviewed	p.D486N	1.000	41	0%	41	14.6%	45	17.7%	benign(0.003)	deleterious(0.03)	neutral(0.364)	HMMPfam_Hexokinase_1,superfamily_SSF53067
HK1	3098	genome.wustl.edu	37	10	71144180	71144180	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033497.2	+1	reviewed	p.E558D	0.999	141	0%	126	31%	37	35.1%	benign(0.009)	tolerated(0.36)	neutral(0.021)	HMMPfam_Hexokinase_1,superfamily_SSF53067
TACR2	6865	genome.wustl.edu	37	10	71175864	71175864	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001057.2	-1	validated	p.I72	0.256	29	0%	28	17.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TSPAN15	23555	genome.wustl.edu	37	10	71244961	71244961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012339.3	+1	reviewed	p.F116Y	1.000	81	0%	71	23.9%	59	28.8%	possibly_damaging(0.913)	tolerated(0.12)	deleterious(0.625)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
KIAA1274	27143	genome.wustl.edu	37	10	72298727	72298727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014431.2	+1	validated	p.R511H	0.998	24	0%	22	31.8%	8	50%	probably_damaging(0.953)	tolerated(0.19)	neutral(0.446)	NULL
C10orf27	219793	genome.wustl.edu	37	10	72539473	72539473	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152710.2	-1	validated	p.V101	0.007	72	0%	92	34.8%	0	-	-	-	-	NULL
C10orf27	219793	genome.wustl.edu	37	10	72541716	72541716	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152710.2	-1	validated	p.E40*	0.320	75	0%	64	31.2%	0	-	-	-	-	NULL
SGPL1	8879	genome.wustl.edu	37	10	72617373	72617373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003901.3	+1	validated	p.A138T	0.097	112	0%	88	35.2%	41	39%	benign(0.001)	tolerated(0.4)	neutral(0.016)	superfamily_PLP-dependent transferases
UNC5B	219699	genome.wustl.edu	37	10	73047500	73047500	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170744.3	+1	validated	p.T293	0.012	58	0%	40	37.5%	13	15.3%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
CDH23	64072	genome.wustl.edu	37	10	73405614	73405614	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022124.5	+1	reviewed	p.Y389*	1.000	32	0%	32	37.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73492133	73492133	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022124.5	+1	reviewed	e31+1	1.000	8	0.000	15	0.400	0	-	-	-	-	-
CDH23	64072	genome.wustl.edu	37	10	73574991	73574991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022124.5	+1	reviewed	p.R3341C	0.274	24	0%	32	28.1%	1	0%	benign(0.187)	deleterious(0)	neutral(0.462)	NULL
ANXA7	310	genome.wustl.edu	37	10	75142956	75142956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004034.2	-1	reviewed	p.R321C	0.997	178	0%	158	10.8%	157	19.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
USP54	159195	genome.wustl.edu	37	10	75258467	75258467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152586.3	-1	provisional	p.E1659K	0.037	199	0%	263	30%	7	0%	possibly_damaging(0.564)	deleterious(0)	deleterious(0.637)	NULL
USP54	159195	genome.wustl.edu	37	10	75276512	75276512	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152586.3	-1	provisional	p.Q1224	0.006	174	0%	146	31.5%	4	25%	-	-	-	NULL
SEC24C	9632	genome.wustl.edu	37	10	75530509	75530509	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004922.2	+1	reviewed	p.R1033*	0.958	250	0%	256	32%	52	25%	-	-	-	HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24
CAMK2G	818	genome.wustl.edu	37	10	75607064	75607064	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000441192	-1	known	p.E25*	1.000	56	0%	51	21.6%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
VCL	7414	genome.wustl.edu	37	10	75867018	75867018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014000.2	+1	reviewed	p.Y822C	1.000	95	0%	95	37.9%	50	30%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
KCNMA1	3778	genome.wustl.edu	37	10	78647231	78647231	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000372403	-1	known	p.R1061Q	1.000	97	0%	120	26.7%	0	-	-	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78647233	78647233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014797.2	-1	reviewed	p.P1114S	1.000	94	0%	116	12.1%	1	0%	benign(0.008)	tolerated(0.13)	neutral(0.253)	NULL
MAT1A	4143	genome.wustl.edu	37	10	82040037	82040037	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000429.2	-1	reviewed	p.E147	0.156	119	0%	119	28.6%	0	-	-	-	-	HMMPfam_S-AdoMet_synt_M,superfamily_S-AdoMet_synt
DYDC2	84332	genome.wustl.edu	37	10	82122272	82122272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032372.4	+1	provisional	p.R25W	0.805	53	0%	56	32.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Dpy-30
FAM213A	84293	genome.wustl.edu	37	10	82187231	82187231	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032333.4	+1	validated	p.F185	1.000	125	0%	144	31.2%	141	51.7%	-	-	-	NULL
TSPAN14	81619	genome.wustl.edu	37	10	82269209	82269209	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030927.2	+1	validated	p.I144	0.247	246	0%	237	29.1%	84	63%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
NRG3	10718	genome.wustl.edu	37	10	83635877	83635877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010848.3	+1	reviewed	p.A261T	0.000	15	0%	12	58.3%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
GHITM	27069	genome.wustl.edu	37	10	85903762	85903762	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014394.2	+1	validated	p.G81*	1.000	67	0%	60	25%	151	0.6%	-	-	-	NULL
LRIT1	26103	genome.wustl.edu	37	10	85992454	85992454	+	Silent	SNP	G	G	A	rs188740348	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015613.2	-1	validated	p.G367	0.000	47	0%	30	46.7%	0	-	-	-	-	NULL
LRIT1	26103	genome.wustl.edu	37	10	85997337	85997337	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015613.2	-1	validated	p.G76	0.003	28	0%	13	30.8%	0	-	-	-	-	superfamily_SSF52058
GRID1	2894	genome.wustl.edu	37	10	87484317	87484317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017551.2	-1	reviewed	p.E550D	1.000	97	0%	64	35.9%	1	0%	probably_damaging(0.988)	tolerated(0.05)	deleterious(0.783)	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRID1	2894	genome.wustl.edu	37	10	87484318	87484318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017551.2	-1	reviewed	p.E550G	1.000	96	0%	63	34.9%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
MINPP1	9562	genome.wustl.edu	37	10	89264870	89264870	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004897.4	+1	validated	p.A66	0.001	21	0%	17	23.5%	8	37.5%	-	-	-	superfamily_Phosphoglycerate mutase-like
PAPSS2	9060	genome.wustl.edu	37	10	89472953	89472953	+	Silent	SNP	C	C	T	rs144784084	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001015880.1	+1	reviewed	p.L89	0.724	201	0%	180	33.3%	9	0%	-	-	-	HMMPfam_APS_kinase,superfamily_SSF52540
PAPSS2	9060	genome.wustl.edu	37	10	89474778	89474778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001015880.1	+1	reviewed	p.E226K	1.000	177	0%	151	33.8%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PUA-like
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000371953	+1	known	p.R130Q	1.000	367	0.3%	191	48.2%	64	32.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
STAMBPL1	57559	genome.wustl.edu	37	10	90681119	90681119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020799.2	+1	provisional	p.A374V	1.000	126	0%	93	33.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00232,superfamily_JAB1/MPN domain
FAS	355	genome.wustl.edu	37	10	90770295	90770295	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000043.3	+1	reviewed	e5-1	0.991	144	0%	105	32.4%	0	-	-	-	-	-
CH25H	9023	genome.wustl.edu	37	10	90966537	90966537	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003956.3	-1	reviewed	p.T171	0.998	133	0%	88	22.7%	3	0%	-	-	-	HMMPfam_FA_hydroxylase
LIPA	3988	genome.wustl.edu	37	10	90983569	90983569	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000235.2	-1	reviewed	p.E232*	0.447	263	0%	239	26.4%	14	0%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
IFIT3	3437	genome.wustl.edu	37	10	91099805	91099805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031683.2	+1	validated	p.D465Y	0.000	198	0%	150	28%	6	0%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
IFIT1	3434	genome.wustl.edu	37	10	91162423	91162423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001548.3	+1	validated	p.P131S	0.000	212	0%	286	28.3%	8	12.5%	benign(0.141)	tolerated(0.09)	neutral(0.308)	superfamily_TPR-like
IFIT1	3434	genome.wustl.edu	37	10	91162636	91162636	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001548.3	+1	validated	p.S202A	0.606	657	0%	736	36%	5	20%	possibly_damaging(0.913)	tolerated(0.3)	neutral(0.393)	superfamily_TPR-like
IFIT5	24138	genome.wustl.edu	37	10	91177930	91177930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012420.2	+1	validated	p.F325C	0.961	233	0%	221	29%	7	0%	benign(0.207)	tolerated(0.18)	neutral(0.076)	superfamily_SSF48452
KIF20B	9585	genome.wustl.edu	37	10	91469805	91469805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016195.2	+1	validated	p.K158T	1.000	134	0%	118	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91497726	91497726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016195.2	+1	validated	p.R1003Q	0.000	295	0%	187	30.5%	2	50%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
KIF20B	9585	genome.wustl.edu	37	10	91514307	91514307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016195.2	+1	validated	p.K1420N	0.997	132	0%	81	29.6%	6	33.3%	benign(0.296)	deleterious(0)	deleterious(0.536)	NULL
KIF20B	9585	genome.wustl.edu	37	10	91520360	91520360	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016195.2	+1	validated	p.S1546	0.000	104	0%	63	12.7%	7	42.8%	-	-	-	NULL
HTR7	3363	genome.wustl.edu	37	10	92509291	92509291	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019859.3	-1	reviewed	p.A200	0.882	88	0%	95	36.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RPP30	10556	genome.wustl.edu	37	10	92631765	92631765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001104546.1	+1	validated	p.D8N	0.999	98	0%	86	23.3%	25	28%	benign(0.001)	tolerated(1)	-	superfamily_PHP domain-like
PCGF5	84333	genome.wustl.edu	37	10	93021104	93021104	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032373.3	+1	provisional	p.R166*	1.000	117	0.9%	66	37.9%	3	0%	-	-	-	NULL
HECTD2	143279	genome.wustl.edu	37	10	93253232	93253232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182765.3	+1	validated	p.C496W	1.000	55	0%	32	28.1%	0	-	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
TNKS2	80351	genome.wustl.edu	37	10	93619225	93619225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025235.3	+1	validated	p.P1034H	1.000	147	0%	155	28.4%	15	20%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PARP,superfamily_SSF56399
IDE	3416	genome.wustl.edu	37	10	94268595	94268595	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004969.3	-1	reviewed	p.F317C	1.000	254	0%	195	29.2%	14	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd
EXOC6	54536	genome.wustl.edu	37	10	94653187	94653187	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019053.4	+1	reviewed	p.E61D	1.000	301	0.3%	268	33.6%	1	0%	benign(0.026)	tolerated(0.63)	neutral(0.005)	NULL
EXOC6	54536	genome.wustl.edu	37	10	94654714	94654714	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019053.4	+1	reviewed	p.R117*	1.000	425	0%	371	24.3%	2	0%	-	-	-	NULL
EXOC6	54536	genome.wustl.edu	37	10	94675524	94675524	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019053.4	+1	reviewed	p.Q225E	1.000	265	0%	195	29.2%	0	-	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
EXOC6	54536	genome.wustl.edu	37	10	94715465	94715465	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019053.4	+1	reviewed	p.T589	0.995	102	0%	98	34.7%	2	0%	-	-	-	HMMPfam_Sec15
CYP26A1	1592	genome.wustl.edu	37	10	94834624	94834624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000783.3	+1	reviewed	p.L168R	1.000	29	0%	26	34.6%	2	100%	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	HMMPfam_p450,superfamily_Cytochrome_P450
LGI1	9211	genome.wustl.edu	37	10	95556818	95556818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005097.2	+1	reviewed	p.R311Q	1.000	222	0%	180	29.4%	0	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_EPTP
PLCE1	51196	genome.wustl.edu	37	10	95848940	95848940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000371375	+1	known	p.K30T	1.000	134	0%	123	31.7%	0	-	benign(0.048)	-	-	NULL
PLCE1	51196	genome.wustl.edu	37	10	96014664	96014664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016341.3	+1	reviewed	p.A1138T	0.003	823	0%	719	28.9%	0	-	benign(0)	tolerated(1)	-	NULL
PLCE1	51196	genome.wustl.edu	37	10	96030304	96030304	+	Missense_Mutation	SNP	C	C	T	rs121912605		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016341.3	+1	reviewed	p.S1484L	1.000	228	0%	156	25.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
NOC3L	64318	genome.wustl.edu	37	10	96094437	96094437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022451.9	-1	provisional	p.E743A	1.000	211	0%	153	37.3%	19	42.1%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
NOC3L	64318	genome.wustl.edu	37	10	96106288	96106288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022451.9	-1	provisional	p.R428K	1.000	128	0%	93	25.8%	8	50%	benign(0.078)	tolerated(0.44)	neutral(0.018)	NULL
CYP2C9	1559	genome.wustl.edu	37	10	96740962	96740962	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000771.3	+1	reviewed	p.E328	0.006	298	0%	266	27.1%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP2C8	1558	genome.wustl.edu	37	10	96824642	96824642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000770.3	-1	reviewed	p.R186L	0.959	377	0%	256	29.3%	0	-	possibly_damaging(0.611)	deleterious(0)	deleterious(0.656)	HMMPfam_p450,superfamily_Cytochrome_P450
C10orf129	142827	genome.wustl.edu	37	10	96967012	96967012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207321.2	+1	validated	p.R151C	0.032	162	0%	118	29.7%	0	-	probably_damaging(0.985)	tolerated(0.06)	deleterious(0.754)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
C10orf129	142827	genome.wustl.edu	37	10	96970503	96970503	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207321.2	+1	validated	p.V236	0.023	259	0%	182	28.6%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
SORBS1	10580	genome.wustl.edu	37	10	97081759	97081759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001034954.1	-1	validated	p.R1220Q	1.000	163	0%	108	32.4%	2	0%	benign(0.167)	tolerated(0.43)	neutral(0.028)	superfamily_SH3-domain
SORBS1	10580	genome.wustl.edu	37	10	97170406	97170406	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001034954.1	-1	validated	p.L313	0.993	137	0%	121	40.5%	2	0%	-	-	-	NULL
CC2D2B	387707	genome.wustl.edu	37	10	97769622	97769622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001732.3	+1	validated	p.R21K	0.991	213	0%	179	30.7%	0	-	benign(0.08)	tolerated(0.07)	neutral(0.325)	NULL
ZNF518A	9849	genome.wustl.edu	37	10	97917389	97917389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000371192	+1	known	p.S437Y	1.000	249	0%	238	29.8%	1	100%	-	-	-	NULL
ZNF518A	9849	genome.wustl.edu	37	10	97918180	97918180	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000371192	+1	known	p.S701R	0.963	227	0%	163	30.7%	1	0%	-	-	-	NULL
ZNF518A	9849	genome.wustl.edu	37	10	97919368	97919368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000371192	+1	known	p.F1097V	0.568	204	0%	170	27.6%	5	60%	-	-	-	NULL
DNTT	1791	genome.wustl.edu	37	10	98092148	98092148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004088.3	+1	reviewed	p.E385G	0.997	166	0%	115	35.7%	0	-	possibly_damaging(0.716)	deleterious(0.02)	deleterious(0.642)	HMMSmart_SM00483,HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
OPALIN	93377	genome.wustl.edu	37	10	98105733	98105733	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033207.3	-1	validated	p.L131	0.001	226	0%	198	28.8%	0	-	-	-	-	NULL
LCOR	84458	genome.wustl.edu	37	10	98715309	98715309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032440.3	+1	validated	p.S311Y	1.000	97	0%	130	31.5%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
C10orf12	26148	genome.wustl.edu	37	10	98744015	98744015	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015652.2	+1	predicted	p.D956	0.227	299	0%	282	33.7%	1	0%	-	-	-	NULL
SLIT1	6585	genome.wustl.edu	37	10	98762522	98762522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003061.2	-1	validated	p.E1365K	0.990	24	0%	21	47.6%	1	0%	benign(0.059)	tolerated(0.55)	neutral(0.011)	HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
SLIT1	6585	genome.wustl.edu	37	10	98803214	98803214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003061.2	-1	validated	p.R637H	1.000	23	0%	37	35.1%	0	-	benign(0.127)	tolerated(0.19)	neutral(0.060)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
ARHGAP19	84986	genome.wustl.edu	37	10	99019234	99019234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032900.4	-1	validated	p.K255N	1.000	170	0%	188	33%	5	40%	probably_damaging(0.967)	tolerated(0.15)	deleterious(0.650)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
CRTAC1	55118	genome.wustl.edu	37	10	99640121	99640121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000298819	-1	known	p.S554L	0.358	205	0%	218	32.6%	1	0%	benign(0.104)	-	-	NULL
CRTAC1	55118	genome.wustl.edu	37	10	99770903	99770903	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018058.4	-1	validated	p.V72	0.000	75	0%	81	32.1%	0	-	-	-	-	superfamily_Integrin alpha N-terminal domain
C10orf28	27291	genome.wustl.edu	37	10	99968054	99968054	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014472.4	+1	validated	p.V61	0.147	229	0%	184	31.5%	4	25%	-	-	-	NULL
PYROXD2	84795	genome.wustl.edu	37	10	100144783	100144783	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032709.2	-1	validated	p.F532	0.590	38	0%	51	19.6%	6	66.6%	-	-	-	NULL
CNNM1	26507	genome.wustl.edu	37	10	101090494	101090494	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020348.2	+1	validated	p.F450	1.000	93	0%	71	22.5%	0	-	-	-	-	NULL
SLC25A28	81894	genome.wustl.edu	37	10	101370677	101370677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031212.3	-1	validated	p.A342T	1.000	146	0%	120	33.3%	41	24.3%	benign(0.011)	tolerated(0.32)	neutral(0.025)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A28	81894	genome.wustl.edu	37	10	101370942	101370942	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031212.3	-1	validated	p.F253	1.000	107	0%	78	32.1%	35	37.1%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ENTPD7	57089	genome.wustl.edu	37	10	101421343	101421343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020354.3	+1	validated	p.R50Q	1.000	169	0%	161	35.4%	4	25%	benign(0.222)	tolerated(0.31)	neutral(0.049)	NULL
COX15	1355	genome.wustl.edu	37	10	101480791	101480791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_078470.4	-1	reviewed	p.R262Q	1.000	67	0%	68	29.4%	41	31.7%	benign(0.251)	tolerated(0.09)	neutral(0.322)	HMMPfam_COX15-CtaA
ABCC2	1244	genome.wustl.edu	37	10	101578854	101578854	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000392.3	+1	reviewed	p.L816	1.000	184	0%	155	32.3%	1	0%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC2	1244	genome.wustl.edu	37	10	101590090	101590090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000392.3	+1	reviewed	p.D883N	0.781	161	0%	114	24.6%	0	-	benign(0.177)	tolerated(0.5)	neutral(0.027)	NULL
ABCC2	1244	genome.wustl.edu	37	10	101591417	101591417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000392.3	+1	reviewed	p.S978L	0.000	249	0%	207	28.5%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC2	1244	genome.wustl.edu	37	10	101601737	101601737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000392.3	+1	reviewed	p.R1210C	1.000	58	0%	55	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DNMBP	23268	genome.wustl.edu	37	10	101654768	101654768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015221.2	-1	validated	p.R1031*	1.000	106	0%	65	30.8%	2	0%	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
DNMBP	23268	genome.wustl.edu	37	10	101667762	101667762	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015221.2	-1	validated	p.S848	0.997	114	0%	107	30.8%	0	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
DNMBP	23268	genome.wustl.edu	37	10	101715898	101715898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015221.2	-1	validated	p.D445N	0.007	308	0%	352	28.7%	1	100%	benign(0.139)	deleterious(0.02)	neutral(0.395)	NULL
DNMBP	23268	genome.wustl.edu	37	10	101728976	101728976	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015221.2	-1	validated	p.F55C	1.000	166	0%	163	28.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CPN1	1369	genome.wustl.edu	37	10	101825073	101825073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001308.2	-1	reviewed	p.L211I	1.000	61	0%	65	18.5%	0	-	probably_damaging(0.953)	tolerated(0.08)	deleterious(0.697)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CWF19L1	55280	genome.wustl.edu	37	10	101995447	101995447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018294.4	-1	validated	p.K483N	0.997	131	0%	88	30.7%	6	16.6%	benign(0.146)	tolerated(0.07)	neutral(0.332)	HMMPfam_CwfJ_C_2
SCD	6319	genome.wustl.edu	37	10	102120659	102120659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005063.4	+1	validated	p.R350I	1.000	150	0%	105	29.5%	133	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEC31B	25956	genome.wustl.edu	37	10	102265892	102265892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015490.3	-1	reviewed	p.S317P	0.994	256	0%	221	20.4%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMSmart_SM00320,superfamily_WD40 repeat-like
HIF1AN	55662	genome.wustl.edu	37	10	102296219	102296219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017902.2	+1	validated	p.D77N	1.000	224	0.4%	188	38.3%	14	50%	probably_damaging(0.985)	tolerated(0.21)	deleterious(0.476)	superfamily_SSF51197
HIF1AN	55662	genome.wustl.edu	37	10	102304802	102304802	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017902.2	+1	validated	p.F224	1.000	114	0%	114	22.8%	25	32%	-	-	-	HMMSmart_JmjC,superfamily_SSF51197
HIF1AN	55662	genome.wustl.edu	37	10	102306918	102306918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017902.2	+1	validated	p.I306V	1.000	44	0%	41	26.8%	35	40%	benign(0.061)	deleterious(0.03)	neutral(0.368)	HMMSmart_JmjC,superfamily_SSF51197
PAX2	5076	genome.wustl.edu	37	10	102587369	102587369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000370294	+1	known	p.R416H	1.000	148	0%	100	10%	0	-	possibly_damaging(0.801)	deleterious(0.02)	deleterious(0.684)	NULL
MGEA5	10724	genome.wustl.edu	37	10	103558652	103558652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012215.3	-1	validated	p.R586*	1.000	215	0%	224	33%	8	0%	-	-	-	NULL
LDB1	8861	genome.wustl.edu	37	10	103869714	103869714	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113407.1	-1	validated	p.H204Q	1.000	81	0%	82	25.6%	90	47.7%	possibly_damaging(0.664)	tolerated(0.09)	deleterious(0.531)	HMMPfam_LIM_bind
SUFU	51684	genome.wustl.edu	37	10	104389894	104389894	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000441466	+1	known	p.R374*	0.998	86	0%	174	63.2%	11	9%	-	-	-	HMMPfam_SUFU
CYP17A1	1586	genome.wustl.edu	37	10	104596925	104596925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000102.3	-1	reviewed	p.S65L	0.998	102	0%	118	32.2%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_p450,superfamily_Cytochrome P450
AS3MT	57412	genome.wustl.edu	37	10	104638216	104638216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000369880	+1	known	p.V231F	1.000	416	0%	238	16%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PDCD11	22984	genome.wustl.edu	37	10	105165809	105165809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014976.1	+1	validated	p.T211N	1.000	235	0%	268	30.6%	4	75%	benign(0.111)	tolerated(0.07)	neutral(0.328)	superfamily_Nucleic_acid_OB,HMMSmart_S1
PDCD11	22984	genome.wustl.edu	37	10	105187118	105187118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014976.1	+1	validated	p.R1113Q	0.764	316	0%	248	28.2%	20	35%	benign(0.058)	tolerated(0.49)	neutral(0.014)	superfamily_Nucleic_acid_OB
NEURL	9148	genome.wustl.edu	37	10	105331434	105331434	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004210.4	+1	validated	p.I168	0.981	37	0%	38	18.4%	1	0%	-	-	-	HMMSmart_SM00588
SH3PXD2A	9644	genome.wustl.edu	37	10	105365611	105365611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014631.2	-1	validated	p.E430K	1.000	125	0%	130	19.2%	6	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00326,superfamily_SH3-domain
COL17A1	1308	genome.wustl.edu	37	10	105831820	105831820	+	Nonsense_Mutation	SNP	G	G	A	rs121912774		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000494.3	-1	reviewed	p.R145*	1.000	76	0%	74	32.4%	3	0%	-	-	-	NULL
COL17A1	1308	genome.wustl.edu	37	10	105833945	105833945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000494.3	-1	reviewed	p.F126V	0.952	269	0%	229	32.8%	2	0%	unknown(0)	deleterious(0.03)	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105905294	105905294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025145.5	-1	provisional	p.F1295S	1.000	124	0%	88	37.5%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
ITPRIP	85450	genome.wustl.edu	37	10	106074373	106074373	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033397.2	-1	provisional	p.I479	0.463	93	0%	49	28.6%	3	0%	-	-	-	NULL
ITPRIP	85450	genome.wustl.edu	37	10	106074737	106074737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033397.2	-1	provisional	p.D358G	1.000	96	0%	85	30.6%	5	40%	probably_damaging(0.967)	tolerated(0.37)	neutral(0.428)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106159247	106159247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008723.1	+1	validated	p.E602K	1.000	92	0%	91	13.2%	0	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	NULL
SORCS3	22986	genome.wustl.edu	37	10	107005408	107005408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014978.1	+1	reviewed	p.E993*	1.000	89	0%	95	31.6%	0	-	-	-	-	superfamily_PKD
SORCS1	114815	genome.wustl.edu	37	10	108357161	108357161	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000452214	-1	known	p.S86L	1.000	90	0%	94	29.8%	0	-	-	-	-	NULL
SORCS1	114815	genome.wustl.edu	37	10	108388985	108388985	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013031.1	-1	reviewed	p.S879	1.000	68	0%	106	35.8%	0	-	-	-	-	HMMPfam_PKD,HMMSmart_PKD,superfamily_PKD
SORCS1	114815	genome.wustl.edu	37	10	108389108	108389108	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013031.1	-1	reviewed	p.G838	0.010	61	0%	96	33.3%	0	-	-	-	-	HMMPfam_PKD,HMMSmart_PKD,superfamily_PKD
SORCS1	114815	genome.wustl.edu	37	10	108489832	108489832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013031.1	-1	reviewed	p.L334I	1.000	197	0%	186	15.6%	0	-	benign(0.082)	tolerated(0.75)	neutral(0.007)	HMMSmart_VPS10,superfamily_SSF110296
XPNPEP1	7511	genome.wustl.edu	37	10	111643876	111643876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020383.3	-1	reviewed	p.E217G	1.000	203	0%	150	31.3%	43	32.5%	possibly_damaging(0.595)	deleterious(0.04)	deleterious(0.555)	NULL
ADD3	120	genome.wustl.edu	37	10	111876161	111876161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016824.3	+1	reviewed	p.Y160F	1.000	216	0%	201	27.4%	7	28.5%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
ADD3	120	genome.wustl.edu	37	10	111878434	111878434	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016824.3	+1	reviewed	p.I219	1.000	149	0%	122	27%	6	16.6%	-	-	-	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
ADD3	120	genome.wustl.edu	37	10	111879242	111879242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016824.3	+1	reviewed	p.H294N	1.000	381	0%	374	15.2%	10	50%	possibly_damaging(0.872)	deleterious(0)	deleterious(0.784)	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
ADD3	120	genome.wustl.edu	37	10	111890220	111890220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016824.3	+1	reviewed	p.E570K	1.000	241	0%	223	31.8%	20	55%	possibly_damaging(0.749)	deleterious(0)	deleterious(0.720)	NULL
MXI1	4601	genome.wustl.edu	37	10	112044616	112044616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130439.3	+1	reviewed	p.F253L	1.000	141	0%	106	27.4%	4	25%	benign(0.059)	tolerated(0.18)	neutral(0.060)	NULL
SHOC2	8036	genome.wustl.edu	37	10	112724517	112724517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007373.3	+1	reviewed	p.K134T	1.000	245	0%	185	28.1%	10	40%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
SHOC2	8036	genome.wustl.edu	37	10	112769584	112769584	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007373.3	+1	reviewed	p.E512D	1.000	124	0%	86	29.1%	20	35%	possibly_damaging(0.67)	deleterious(0.03)	deleterious(0.602)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
ACSL5	51703	genome.wustl.edu	37	10	114154681	114154681	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016234.3	+1	reviewed	p.N49H	0.997	554	0%	417	25.2%	3	0%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	NULL
ACSL5	51703	genome.wustl.edu	37	10	114176774	114176774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016234.3	+1	reviewed	p.K460N	1.000	176	0%	160	39.4%	11	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Acetyl-CoA synthetase-like
HABP2	3026	genome.wustl.edu	37	10	115334082	115334082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004132.3	+1	reviewed	p.E47D	0.001	184	0%	151	27.2%	0	-	probably_damaging(0.99)	tolerated(0.27)	deleterious(0.475)	NULL
NRAP	4892	genome.wustl.edu	37	10	115385856	115385856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198060.2	-1	validated	p.D732N	0.926	26	0%	29	34.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nebulin,HMMSmart_SM00227
NRAP	4892	genome.wustl.edu	37	10	115392924	115392924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198060.2	-1	validated	p.E517D	1.000	127	0%	111	27%	0	-	probably_damaging(0.999)	tolerated(0.26)	deleterious(0.524)	HMMPfam_Nebulin,HMMSmart_SM00227
NHLRC2	374354	genome.wustl.edu	37	10	115636598	115636598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198514.2	+1	provisional	p.S217Y	1.000	252	0%	283	35.3%	5	60%	benign(0.372)	tolerated(0.28)	neutral(0.150)	superfamily_NHL repeat
ABLIM1	3983	genome.wustl.edu	37	10	116245085	116245085	+	Nonsense_Mutation	SNP	G	G	A	rs182557837	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003408.1	-1	reviewed	p.R306*	1.000	28	0%	19	36.8%	0	-	-	-	-	NULL
ABLIM1	3983	genome.wustl.edu	37	10	116417743	116417743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002313.5	-1	reviewed	p.R73C	0.002	215	0%	191	28.3%	0	-	benign(0.339)	deleterious(0.02)	deleterious(0.490)	NULL
ATRNL1	26033	genome.wustl.edu	37	10	116930986	116930986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207303.2	+1	validated	p.M428I	1.000	487	0%	324	15.4%	0	-	benign(0.309)	deleterious(0.04)	neutral(0.446)	superfamily_Galactose oxidase central domain
GFRA1	2674	genome.wustl.edu	37	10	117849250	117849250	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005264.4	-1	reviewed	e8+2	1.000	186	0%	183	26.8%	0	-	-	-	-	-
GFRA1	2674	genome.wustl.edu	37	10	117884934	117884934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005264.4	-1	reviewed	p.R190C	0.998	22	0%	33	42.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_GDNF,superfamily_GDNF receptor-like (Pfam 02351)
C10orf96	374355	genome.wustl.edu	37	10	118101710	118101710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198515.2	+1	validated	p.S149R	0.893	133	0%	109	27.5%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
PNLIPRP3	119548	genome.wustl.edu	37	10	118236611	118236611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001011709.2	+1	validated	p.F450L	0.995	309	0%	230	31.3%	1	0%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_PLAT,PatternScan_HMG_COA_REDUCTASE_1,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
PNLIPRP1	5407	genome.wustl.edu	37	10	118357455	118357455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006229.2	+1	provisional	p.F230L	0.038	106	0%	92	13%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIPRP1	5407	genome.wustl.edu	37	10	118357456	118357456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006229.2	+1	provisional	p.L231V	0.030	105	0%	91	30.8%	0	-	benign(0.204)	deleterious(0.01)	neutral(0.425)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
KIAA1598	57698	genome.wustl.edu	37	10	118728221	118728221	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127211.1	-1	validated	p.C38	1.000	73	0%	41	19.5%	9	66.6%	-	-	-	NULL
KCNK18	338567	genome.wustl.edu	37	10	118969762	118969762	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181840.1	+1	provisional	p.V369	0.000	101	0%	111	34.2%	0	-	-	-	-	NULL
SLC18A2	6571	genome.wustl.edu	37	10	119036686	119036686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003054.4	+1	reviewed	p.D485G	1.000	112	0%	80	25%	0	-	benign(0.221)	tolerated(0.27)	neutral(0.056)	NULL
PDZD8	118987	genome.wustl.edu	37	10	119049778	119049778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173791.3	-1	provisional	p.V394I	0.999	136	0%	133	27.8%	18	44.4%	possibly_damaging(0.949)	tolerated(0.08)	deleterious(0.693)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
LOC100129413	100129413	genome.wustl.edu	37	10	119799610	119799610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001726297.1	+1	model	p.S2R	0.000	102	0%	118	28%	0	-	-	-	-	NULL
RAB11FIP2	22841	genome.wustl.edu	37	10	119805334	119805334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014904.2	-1	validated	p.R114I	1.000	81	0%	70	25.7%	1	0%	possibly_damaging(0.577)	deleterious(0.01)	deleterious(0.604)	HMMSmart_C2,superfamily_C2_CaLB
C10orf46	143384	genome.wustl.edu	37	10	120454686	120454686	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153810.4	-1	validated	p.N285H	1.000	255	0%	184	22.3%	5	40%	benign(0.075)	tolerated(0.12)	neutral(0.266)	NULL
C10orf46	143384	genome.wustl.edu	37	10	120460893	120460893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153810.4	-1	validated	p.N241D	1.000	100	0%	112	25.9%	6	50%	possibly_damaging(0.649)	tolerated(0.09)	deleterious(0.524)	HMMPfam_Cullin,superfamily_Cullin repeat
EIF3A	8661	genome.wustl.edu	37	10	120795559	120795559	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003750.2	-1	validated	p.R1381*	1.000	77	0%	80	16.3%	89	20.2%	-	-	-	NULL
SFXN4	119559	genome.wustl.edu	37	10	120923699	120923699	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213649.1	-1	validated	p.R41*	0.410	309	0%	247	33.6%	4	0%	-	-	-	HMMPfam_Mtc
FGFR2	2263	genome.wustl.edu	37	10	123247585	123247585	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022970.3	-1	reviewed	p.E637*	1.000	437	0%	362	30.4%	10	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
TACC2	10579	genome.wustl.edu	37	10	123843318	123843318	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206862.2	+1	reviewed	p.E435*	0.003	79	0%	70	18.6%	0	-	-	-	-	NULL
TACC2	10579	genome.wustl.edu	37	10	123845364	123845364	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206862.2	+1	reviewed	p.F1117V	0.000	41	0%	29	31%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
TACC2	10579	genome.wustl.edu	37	10	123845889	123845889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206862.2	+1	reviewed	p.A1292T	0.000	33	0%	32	21.9%	3	0%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
TACC2	10579	genome.wustl.edu	37	10	123972884	123972884	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000368999	+1	known	p.C515	1.000	228	0%	213	28.2%	2	50%	-	-	-	NULL
BTBD16	118663	genome.wustl.edu	37	10	124057286	124057286	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144587.2	+1	validated	p.C198	0.995	116	0.9%	92	18.5%	0	-	-	-	-	superfamily_POZ domain,HMMPfam_BTB
HTRA1	5654	genome.wustl.edu	37	10	124266347	124266347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002775.4	+1	reviewed	p.E306D	0.997	35	0%	35	25.7%	122	5.7%	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_Trypsin,superfamily_Pept_Ser_Cys
HTRA1	5654	genome.wustl.edu	37	10	124273726	124273726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002775.4	+1	reviewed	p.D432N	1.000	415	0%	321	26.8%	143	4.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
DMBT1	1755	genome.wustl.edu	37	10	124399909	124399909	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007329.2	+1	reviewed	p.V2303	0.982	74	0%	69	27.5%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1
CUZD1	50624	genome.wustl.edu	37	10	124600712	124600712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022034.4	-1	provisional	p.I72S	0.975	128	0%	84	34.5%	0	-	possibly_damaging(0.485)	deleterious(0)	deleterious(0.606)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PSTK	118672	genome.wustl.edu	37	10	124742896	124742896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153336.2	+1	validated	p.G206E	0.000	112	0%	109	31.2%	10	50%	benign(0)	tolerated(1)	-	HMMPfam_KTI12,superfamily_P-loop containing nucleoside triphosphate hydrolases
HMX2	3167	genome.wustl.edu	37	10	124909146	124909146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005519.1	+1	provisional	p.S110Y	0.983	20	0%	18	50%	0	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
GPR26	2849	genome.wustl.edu	37	10	125426230	125426230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153442.3	+1	validated	p.D103N	1.000	9	0.000	6	0.667	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
FAM53B	9679	genome.wustl.edu	37	10	126370681	126370681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014661.3	-1	validated	p.G134D	1.000	16	0%	10	40%	4	75%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
ADAM12	8038	genome.wustl.edu	37	10	127738231	127738231	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003474.4	-1	reviewed	p.K542N	0.996	192	0%	211	33.2%	1	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM12	8038	genome.wustl.edu	37	10	127753529	127753529	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003474.4	-1	reviewed	p.S488	1.000	19	0%	15	60%	1	0%	-	-	-	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
C10orf90	118611	genome.wustl.edu	37	10	128149983	128149983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004298.2	-1	validated	p.S569Y	0.205	112	0%	73	31.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DOCK1	1793	genome.wustl.edu	37	10	128904531	128904531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398025	+1	known	p.D807N	0.996	31	0%	34	32.4%	11	36.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
DOCK1	1793	genome.wustl.edu	37	10	128944352	128944352	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398025	+1	known	p.K984T	0.002	31	0%	24	20.8%	0	-	-	-	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	129172452	129172452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398025	+1	known	p.R1262C	1.000	47	0%	40	20%	2	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
CLRN3	119467	genome.wustl.edu	37	10	129682028	129682028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152311.3	-1	validated	p.N114S	1.000	83	0%	61	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLRN3	119467	genome.wustl.edu	37	10	129691031	129691031	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152311.3	-1	validated	p.K6	0.206	181	0%	165	27.9%	0	-	-	-	-	NULL
PTPRE	5791	genome.wustl.edu	37	10	129868685	129868685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006504.4	+1	reviewed	p.D422N	0.995	46	0%	43	27.9%	2	0%	probably_damaging(0.973)	tolerated(1)	neutral(0.415)	superfamily_(Phosphotyrosine protein) phosphatases II
PTPRE	5791	genome.wustl.edu	37	10	129881133	129881133	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006504.4	+1	reviewed	p.F689C	1.000	77	0%	42	23.8%	4	0%	benign(0.033)	tolerated(0.45)	neutral(0.013)	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
MKI67	4288	genome.wustl.edu	37	10	129901214	129901214	+	Missense_Mutation	SNP	G	G	A	rs190782061	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002417.4	-1	reviewed	p.R2964W	0.001	131	0%	136	30.1%	20	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MKI67	4288	genome.wustl.edu	37	10	129904724	129904724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002417.4	-1	reviewed	p.D1794Y	0.000	327	0.3%	446	30.3%	4	25%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905984	129905984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002417.4	-1	reviewed	p.E1374K	0.000	350	0%	420	29.3%	13	53.8%	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_K167R
EBF3	253738	genome.wustl.edu	37	10	131640400	131640400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005463.1	-1	validated	p.T442M	1.000	57	0%	48	41.7%	1	0%	possibly_damaging(0.519)	deleterious(0.05)	deleterious(0.520)	NULL
EBF3	253738	genome.wustl.edu	37	10	131671849	131671849	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005463.1	-1	validated	p.S216	1.000	58	0%	49	44.9%	0	-	-	-	-	NULL
EBF3	253738	genome.wustl.edu	37	10	131676110	131676110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005463.1	-1	validated	p.F186L	1.000	39	0%	42	23.8%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
INPP5A	3632	genome.wustl.edu	37	10	134540339	134540339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005539.3	+1	reviewed	p.R221Q	1.000	28	0%	34	29.4%	15	40%	probably_damaging(0.975)	tolerated(0.58)	neutral(0.422)	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
TTC40	54777	genome.wustl.edu	37	10	134646941	134646941	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000448925	-1	known	p.S115L	0.000	140	0%	117	31.6%	0	-	-	-	-	NULL
KNDC1	85442	genome.wustl.edu	37	10	134981792	134981792	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152643.6	+1	validated	p.F112	0.987	72	0%	71	31%	0	-	-	-	-	HMMSmart_SM00750
KNDC1	85442	genome.wustl.edu	37	10	134997424	134997424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152643.6	+1	validated	p.R186C	0.987	40	0%	31	45.2%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00750
KNDC1	85442	genome.wustl.edu	37	10	135027549	135027549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152643.6	+1	validated	p.L1534M	1.000	48	0%	48	62.5%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
SYCE1	93426	genome.wustl.edu	37	10	135371687	135371687	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143764.1	-1	validated	p.I101	1.000	57	0%	53	37.7%	0	-	-	-	-	NULL
NLRP6	171389	genome.wustl.edu	37	11	280979	280979	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138329.1	+1	provisional	p.T415	0.999	37	0%	31	25.8%	0	-	-	-	-	NULL
ATHL1	80162	genome.wustl.edu	37	11	293486	293486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000397660	+1	known	p.S60L	1.000	33	0%	24	25%	10	10%	-	-	-	NULL
TALDO1	6888	genome.wustl.edu	37	11	755887	755887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006755.1	+1	reviewed	p.E36K	0.996	60	0%	56	23.2%	343	46.6%	benign(0)	tolerated(0.93)	-	HMMPfam_Transaldolase,superfamily_SSF51569
TALDO1	6888	genome.wustl.edu	37	11	764325	764325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006755.1	+1	reviewed	p.E291D	1.000	43	0%	46	15.2%	657	10%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Transaldolase,superfamily_SSF51569
TALDO1	6888	genome.wustl.edu	37	11	764833	764833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006755.1	+1	reviewed	p.E334D	0.995	58	0%	52	26.9%	630	43.8%	benign(0.032)	deleterious(0.03)	neutral(0.366)	NULL
MUC5B	727897	genome.wustl.edu	37	11	1262110	1262110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002458.1	+1	validated	p.V1337L	0.159	15	0%	11	36.4%	0	-	benign(0.014)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1267158	1267158	+	Silent	SNP	G	G	A	rs139052978	byCluster;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002458.1	+1	validated	p.P3019	0.000	74	0%	70	24.3%	3	33.3%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1267255	1267255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002458.1	+1	validated	p.T3052P	0.025	99	0%	81	18.5%	8	50%	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1267354	1267354	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002458.1	+1	validated	p.E3085*	0.088	104	0%	63	22.2%	2	0%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271233	1271233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002458.1	+1	validated	p.A4378T	0.000	39	0%	43	32.6%	1	100%	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1272412	1272412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002458.1	+1	validated	p.T4771A	0.013	67	0%	73	32.9%	11	63.6%	unknown(0)	-	-	NULL
KRTAP5-5	439915	genome.wustl.edu	37	11	1651403	1651403	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001480.2	+1	validated	p.S111	1.000	44	0%	39	46.2%	0	-	-	-	-	NULL
LSP1	4046	genome.wustl.edu	37	11	1908081	1908081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002339.2	+1	reviewed	p.K279N	0.909	16	0%	18	50%	10	10%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NAP1L4	4676	genome.wustl.edu	37	11	2997297	2997297	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005969.3	-1	reviewed	p.R44*	0.996	172	0%	152	32.9%	48	2%	-	-	-	NULL
CARS	833	genome.wustl.edu	37	11	3022407	3022407	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001014437.1	-1	reviewed	p.F811	0.000	56	0%	37	43.2%	91	42.8%	-	-	-	NULL
ZNF195	7748	genome.wustl.edu	37	11	3392855	3392855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130520.1	-1	validated	p.L28V	0.080	233	0%	167	34.1%	6	33.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
NUP98	4928	genome.wustl.edu	37	11	3716794	3716794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016320.4	-1	reviewed	p.S1351I	1.000	232	0%	246	27.6%	26	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
NUP98	4928	genome.wustl.edu	37	11	3720411	3720411	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016320.4	-1	reviewed	p.E1304*	1.000	390	0%	375	26.9%	22	0%	-	-	-	NULL
NUP98	4928	genome.wustl.edu	37	11	3744491	3744491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016320.4	-1	reviewed	p.R681Q	0.996	163	0%	162	30.9%	18	72.2%	possibly_damaging(0.78)	tolerated(0.35)	neutral(0.312)	NULL
RRM1	6240	genome.wustl.edu	37	11	4142895	4142895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033.3	+1	reviewed	p.D313G	1.000	208	0%	196	34.7%	49	44.8%	benign(0.038)	deleterious(0)	neutral(0.447)	HMMPfam_Ribonuc_red_lgC,superfamily_SSF51998
RRM1	6240	genome.wustl.edu	37	11	4159538	4159538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033.3	+1	reviewed	p.E768D	1.000	101	0%	55	23.6%	126	46%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
OR52M1	119772	genome.wustl.edu	37	11	4566853	4566853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004137.1	+1	validated	p.R145C	0.001	224	0%	228	31.6%	0	-	probably_damaging(0.968)	tolerated(0.08)	deleterious(0.710)	HMMPfam_7tm_1,superfamily_SSF81321
C11orf40	143501	genome.wustl.edu	37	11	4594609	4594609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144663.1	-1	provisional	p.P79T	0.001	121	0%	128	35.2%	0	-	unknown(0)	-	-	NULL
OR52I2	143502	genome.wustl.edu	37	11	4608359	4608359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005170.2	+1	validated	p.S106L	0.000	442	0%	489	26%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR51D1	390038	genome.wustl.edu	37	11	4661817	4661817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004751.2	+1	validated	p.V266A	0.931	382	0%	375	27.2%	0	-	possibly_damaging(0.484)	deleterious(0.02)	deleterious(0.543)	HMMPfam_7tm_1,superfamily_SSF81321
OR51E1	143503	genome.wustl.edu	37	11	4674676	4674676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152430.3	+1	validated	p.R307Q	0.999	596	0%	449	13.6%	7	0%	benign(0.088)	tolerated(0.36)	neutral(0.026)	superfamily_Family A G protein-coupled receptor-like
OR51E2	81285	genome.wustl.edu	37	11	4703152	4703152	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030774.3	-1	validated	p.G264*	0.581	123	0%	139	36%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52R1	119695	genome.wustl.edu	37	11	4825628	4825628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005177.3	-1	validated	p.D74Y	0.000	168	0%	210	27.6%	0	-	possibly_damaging(0.47)	deleterious(0)	deleterious(0.600)	superfamily_Family A G protein-coupled receptor-like
OR51S1	119692	genome.wustl.edu	37	11	4869808	4869808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004758.1	-1	provisional	p.L211I	0.011	258	0%	225	14.2%	0	-	benign(0.203)	tolerated(0.97)	neutral(0.019)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51S1	119692	genome.wustl.edu	37	11	4869967	4869967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004758.1	-1	provisional	p.F158V	0.000	197	0%	205	13.7%	0	-	benign(0.273)	tolerated(0.78)	neutral(0.030)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51T1	401665	genome.wustl.edu	37	11	4903081	4903081	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004759.1	+1	provisional	p.K11	0.000	229	0%	219	32%	0	-	-	-	-	NULL
OR51A7	119687	genome.wustl.edu	37	11	4929436	4929436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004749.1	+1	provisional	p.F279L	0.115	293	0%	242	36.8%	0	-	benign(0.006)	deleterious(0.03)	neutral(0.364)	HMMPfam_7tm_1,superfamily_SSF81321
OR51G1	79324	genome.wustl.edu	37	11	4944787	4944787	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005237.1	-1	provisional	p.S261	0.030	117	0%	124	33.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR51G1	79324	genome.wustl.edu	37	11	4945148	4945148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005237.1	-1	provisional	p.A141E	0.000	76	0%	90	36.7%	0	-	benign(0.062)	tolerated(0.37)	neutral(0.023)	HMMPfam_7tm_1,superfamily_SSF81321
OR51A4	401666	genome.wustl.edu	37	11	4968260	4968260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005329.1	-1	provisional	p.Y24C	0.000	278	0.4%	201	34.3%	0	-	possibly_damaging(0.827)	tolerated(0.07)	deleterious(0.633)	superfamily_SSF81321
OR51A2	401667	genome.wustl.edu	37	11	4976617	4976617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004748.1	-1	provisional	p.F109L	0.529	600	0%	608	28.9%	0	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_7tm_1,superfamily_SSF81321
MMP26	56547	genome.wustl.edu	37	11	5009523	5009523	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021801.3	+1	reviewed	p.G28*	0.902	169	0%	146	27.4%	0	-	-	-	-	NULL
MMP26	56547	genome.wustl.edu	37	11	5013208	5013208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021801.3	+1	reviewed	p.L204M	1.000	121	0%	104	22.1%	0	-	possibly_damaging(0.592)	deleterious(0.04)	deleterious(0.553)	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486
OR52E2	119678	genome.wustl.edu	37	11	5079921	5079921	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005164.2	-1	validated	p.G313*	0.000	170	0%	149	33.6%	0	-	-	-	-	NULL
OR52E2	119678	genome.wustl.edu	37	11	5080348	5080348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005164.2	-1	validated	p.F170L	0.962	125	0%	145	36.6%	0	-	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52E2	119678	genome.wustl.edu	37	11	5080600	5080600	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005164.2	-1	validated	p.I86	0.816	126	0%	149	32.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52A4	390053	genome.wustl.edu	37	11	5142169	5142169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005222.2	-1	validated	p.L214F	0.000	272	0%	228	24.1%	0	-	benign(0.009)	tolerated(0.76)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
OR51V1	283111	genome.wustl.edu	37	11	5221034	5221034	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004760.2	-1	validated	p.I299	0.022	114	0%	75	30.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51V1	283111	genome.wustl.edu	37	11	5221851	5221851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004760.2	-1	validated	p.S27Y	0.965	239	0%	187	27.3%	0	-	unknown(0)	deleterious(0)	-	superfamily_Family A G protein-coupled receptor-like
OR51B4	79339	genome.wustl.edu	37	11	5322591	5322591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033179.2	-1	validated	p.P196S	0.800	192	0%	174	33.9%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51B2	79345	genome.wustl.edu	37	11	5345261	5345261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033180.4	-1	validated	p.E89D	0.279	181	0%	176	26.7%	0	-	probably_damaging(0.987)	deleterious(0.05)	deleterious(0.782)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51I1	390063	genome.wustl.edu	37	11	5462184	5462184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005288.2	-1	validated	p.M187I	0.877	180	0%	163	32.5%	0	-	probably_damaging(0.953)	tolerated(0.86)	neutral(0.397)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51I2	390064	genome.wustl.edu	37	11	5475036	5475036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004754.2	+1	validated	p.F106L	0.965	257	0%	267	29.2%	0	-	benign(0.088)	tolerated(0.68)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
OR52D1	390066	genome.wustl.edu	37	11	5510620	5510620	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005163.2	+1	validated	p.V228	0.007	365	0%	314	29.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52H1	390067	genome.wustl.edu	37	11	5566581	5566581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005289.1	-1	provisional	p.V58A	0.000	254	0%	332	24.1%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5626739	5626739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003819.2	+1	reviewed	p.R259Q	0.025	177	0%	206	30.6%	0	-	possibly_damaging(0.855)	tolerated(0.3)	neutral(0.359)	NULL
TRIM6	117854	genome.wustl.edu	37	11	5631362	5631362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380090	+1	known	p.P228H	0.000	158	0%	179	9.5%	0	-	-	-	-	NULL
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5655976	5655976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003819.2	+1	reviewed	p.T566M	0.000	123	0%	148	11.5%	1	0%	possibly_damaging(0.925)	tolerated(0.1)	deleterious(0.660)	NULL
TRIM5	85363	genome.wustl.edu	37	11	5686353	5686353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033034.2	-1	reviewed	p.N390H	0.000	481	0%	519	31.6%	7	28.5%	probably_damaging(0.995)	tolerated(0.5)	neutral(0.468)	HMMPfam_SPRY,HMMSmart_SM00449
TRIM22	10346	genome.wustl.edu	37	11	5717876	5717876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000414897	+1	known	p.G49*	0.002	118	0%	101	14.9%	2	0%	possibly_damaging(0.661)	deleterious(0.01)	deleterious(0.639)	NULL
TRIM22	10346	genome.wustl.edu	37	11	5719582	5719582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006074.3	+1	reviewed	p.G186E	0.000	132	0%	106	27.4%	5	0%	benign(0.001)	tolerated(1)	-	NULL
OR52N1	79473	genome.wustl.edu	37	11	5809100	5809100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001913.1	-1	provisional	p.N316T	0.000	154	0%	121	57%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
OR52N1	79473	genome.wustl.edu	37	11	5809845	5809845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001913.1	-1	provisional	p.L68F	1.000	136	0%	165	38.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,superfamily_SSF81321
OR52E6	390078	genome.wustl.edu	37	11	5863044	5863044	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005167.1	-1	provisional	p.W28*	0.993	478	0%	392	26.5%	0	-	-	-	-	superfamily_SSF81321
OR56A1	120796	genome.wustl.edu	37	11	6048700	6048700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001917.2	-1	validated	p.V79M	0.112	288	0%	271	27.3%	0	-	benign(0.342)	tolerated(0.1)	neutral(0.394)	HMMPfam_7tm_1,superfamily_SSF81321
OR52W1	120787	genome.wustl.edu	37	11	6220520	6220520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005178.1	+1	provisional	p.P23S	1.000	262	0%	162	30.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF81321
C11orf42	160298	genome.wustl.edu	37	11	6232257	6232257	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173525.2	+1	validated	p.F329	1.000	106	0%	75	34.7%	0	-	-	-	-	NULL
SMPD1	6609	genome.wustl.edu	37	11	6412930	6412930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000543.3	+1	reviewed	p.D212G	1.000	71	0%	41	34.1%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
SMPD1	6609	genome.wustl.edu	37	11	6414911	6414911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000543.3	+1	reviewed	p.R443Q	0.993	153	0%	86	24.4%	9	11.1%	possibly_damaging(0.782)	tolerated(0.2)	neutral(0.342)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
TRIM3	10612	genome.wustl.edu	37	11	6470405	6470405	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006458.2	-1	reviewed	p.F696	1.000	83	0%	94	29.8%	2	50%	-	-	-	HMMPfam_NHL,superfamily_NHL repeat
DCHS1	8642	genome.wustl.edu	37	11	6646657	6646657	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003737.2	-1	reviewed	p.G2306	1.000	118	0%	69	23.2%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6653362	6653362	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003737.2	-1	reviewed	p.V1127	0.181	40	0%	42	26.2%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6662314	6662314	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003737.2	-1	reviewed	p.T177	0.999	64	0%	64	21.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR10A5	144124	genome.wustl.edu	37	11	6867712	6867712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178168.1	+1	provisional	p.N267H	0.996	369	0%	318	28%	0	-	possibly_damaging(0.818)	tolerated(1)	neutral(0.309)	HMMPfam_7tm_1,superfamily_SSF81321
OR2D3	120775	genome.wustl.edu	37	11	6942866	6942866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004684.1	+1	provisional	p.E212K	0.066	158	0%	187	15.5%	0	-	possibly_damaging(0.683)	tolerated(0.06)	deleterious(0.566)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF214	7761	genome.wustl.edu	37	11	7021799	7021799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013249.2	-1	validated	p.V372A	0.896	220	0%	242	31%	0	-	benign(0.012)	tolerated(0.81)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF214	7761	genome.wustl.edu	37	11	7021924	7021924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013249.2	-1	validated	p.F330L	0.946	228	0%	229	34.5%	0	-	benign(0)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
ZNF214	7761	genome.wustl.edu	37	11	7024014	7024014	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013249.2	-1	validated	p.K18T	0.641	202	0%	179	26.3%	0	-	benign(0.039)	tolerated(0.47)	neutral(0.013)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
NLRP14	338323	genome.wustl.edu	37	11	7064851	7064851	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176822.3	+1	reviewed	p.L532V	1.000	188	0%	180	27.8%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
NLRP14	338323	genome.wustl.edu	37	11	7064860	7064860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176822.3	+1	reviewed	p.L535I	0.998	185	0%	172	33.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP14	338323	genome.wustl.edu	37	11	7065060	7065060	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176822.3	+1	reviewed	p.C601	0.014	235	0%	202	31.2%	0	-	-	-	-	NULL
NLRP14	338323	genome.wustl.edu	37	11	7067961	7067961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176822.3	+1	reviewed	p.H674R	0.020	311	0%	244	31.6%	0	-	benign(0.045)	tolerated(0.44)	neutral(0.015)	superfamily_SSF52047
NLRP14	338323	genome.wustl.edu	37	11	7083723	7083723	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176822.3	+1	reviewed	p.I988	0.993	241	0.4%	184	25.5%	0	-	-	-	-	superfamily_SSF52047
SYT9	143425	genome.wustl.edu	37	11	7335165	7335165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175733.3	+1	validated	p.V346A	1.000	122	0%	134	33.6%	0	-	benign(0.005)	tolerated(1)	-	NULL
OLFML1	283298	genome.wustl.edu	37	11	7509512	7509512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198474.3	+1	validated	p.A95V	1.000	212	0%	191	25.1%	4	0%	possibly_damaging(0.761)	tolerated(1)	neutral(0.282)	NULL
PPFIBP2	8495	genome.wustl.edu	37	11	7674305	7674305	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003621.2	+1	validated	p.F829	0.547	224	0%	128	60.2%	36	91.6%	-	-	-	NULL
CYB5R2	51700	genome.wustl.edu	37	11	7687716	7687716	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016229.3	-1	validated	p.F208	0.657	115	0%	50	32%	5	0%	-	-	-	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
OVCH2	341277	genome.wustl.edu	37	11	7727865	7727865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198185.2	-1	validated	p.S26L	0.005	20	0%	21	28.6%	0	-	benign(0.022)	deleterious(0.03)	neutral(0.365)	NULL
OR5P3	120066	genome.wustl.edu	37	11	7847417	7847417	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153445.1	-1	provisional	p.Y35fs	0.864	-	-	-	-	-	-	-	-	-	superfamily_SSF81321
OR10A3	26496	genome.wustl.edu	37	11	7960728	7960728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003745.1	-1	provisional	p.L114I	1.000	497	0%	505	32.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
NLRP10	338322	genome.wustl.edu	37	11	7981621	7981621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176821.3	-1	reviewed	p.T513I	0.000	169	0%	190	28.4%	0	-	possibly_damaging(0.902)	tolerated(0.06)	deleterious(0.679)	NULL
TUB	7275	genome.wustl.edu	37	11	8060462	8060462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003320.4	+1	reviewed	p.F14L	0.042	326	0%	266	27.8%	0	-	benign(0)	-	-	NULL
TUB	7275	genome.wustl.edu	37	11	8122080	8122080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003320.4	+1	reviewed	p.R438W	1.000	126	0%	162	26.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tub,superfamily_Tubby_C
RIC3	79608	genome.wustl.edu	37	11	8132295	8132295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024557.3	-1	validated	p.A353T	0.010	248	0%	227	23.3%	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
STK33	65975	genome.wustl.edu	37	11	8479004	8479004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030906.2	-1	validated	p.L194P	1.000	207	0%	158	29.1%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DENND5A	23258	genome.wustl.edu	37	11	9164378	9164378	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015213.2	-1	validated	p.T1134	0.005	124	0%	124	29.8%	25	24%	-	-	-	NULL
DENND5A	23258	genome.wustl.edu	37	11	9200415	9200415	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015213.2	-1	validated	p.N554T	1.000	234	0%	165	27.3%	13	23%	probably_damaging(0.957)	tolerated(0.09)	deleterious(0.697)	HMMPfam_dDENN,HMMSmart_SM00801
DENND5A	23258	genome.wustl.edu	37	11	9200560	9200560	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015213.2	-1	validated	p.E506*	1.000	257	0%	241	16.2%	11	0%	-	-	-	NULL
SBF2	81846	genome.wustl.edu	37	11	9830499	9830499	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030962.3	-1	reviewed	p.N1402K	0.992	92	0%	103	33%	7	42.8%	benign(0.167)	deleterious(0.03)	neutral(0.380)	superfamily_(Phosphotyrosine protein) phosphatases II
SBF2	81846	genome.wustl.edu	37	11	9834221	9834221	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030962.3	-1	reviewed	p.F1338C	1.000	157	0%	151	37.1%	3	33.3%	possibly_damaging(0.871)	deleterious(0)	deleterious(0.783)	superfamily_(Phosphotyrosine protein) phosphatases II
SBF2	81846	genome.wustl.edu	37	11	9871600	9871600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030962.3	-1	reviewed	p.L926I	1.000	211	0%	249	14.9%	1	100%	benign(0)	tolerated(1)	-	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
SBF2	81846	genome.wustl.edu	37	11	9874240	9874240	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030962.3	-1	reviewed	p.L865V	1.000	189	0%	165	26.7%	3	33.3%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
LYVE1	10894	genome.wustl.edu	37	11	10585864	10585864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006691.3	-1	reviewed	p.A48V	0.000	185	0%	156	23.1%	1	0%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMSmart_SM00445,superfamily_C-type lectin-like
MRVI1	10335	genome.wustl.edu	37	11	10622516	10622516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098579.1	-1	reviewed	p.E647K	1.000	114	0%	88	27.3%	5	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_MRVI1
MRVI1	10335	genome.wustl.edu	37	11	10624779	10624779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098579.1	-1	reviewed	p.H579R	1.000	31	0%	25	28%	2	0%	benign(0.335)	tolerated(0.09)	neutral(0.402)	HMMPfam_MRVI1
MICAL2	9645	genome.wustl.edu	37	11	12231083	12231083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014632.2	+1	provisional	p.S210Y	0.811	217	0%	202	22.3%	6	16.6%	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_FAD/NAD(P)-binding domain
MICALCL	84953	genome.wustl.edu	37	11	12315811	12315811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032867.2	+1	validated	p.R278Q	0.418	223	0%	174	29.3%	1	0%	possibly_damaging(0.938)	deleterious(0.04)	deleterious(0.732)	NULL
TEAD1	7003	genome.wustl.edu	37	11	12901314	12901314	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021961.5	+1	reviewed	p.I115	0.999	114	0%	74	31.1%	4	25%	-	-	-	HMMPfam_TEA
ARNTL	406	genome.wustl.edu	37	11	13378308	13378308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001030272.1	+1	reviewed	p.D55Y	1.000	239	0%	139	29.5%	3	66.6%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
ARNTL	406	genome.wustl.edu	37	11	13393796	13393796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001030272.1	+1	reviewed	p.E302K	1.000	191	0%	201	28.9%	4	0%	possibly_damaging(0.466)	tolerated(0.18)	neutral(0.209)	NULL
BTBD10	84280	genome.wustl.edu	37	11	13424771	13424771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032320.5	-1	validated	p.V354A	1.000	600	0%	431	26.7%	30	50%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
FAR1	84188	genome.wustl.edu	37	11	13743367	13743367	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032228.5	+1	validated	p.V406	1.000	97	0%	106	31.1%	18	33.3%	-	-	-	HMMPfam_Sterile
CYP2R1	120227	genome.wustl.edu	37	11	14907335	14907335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024514.4	-1	reviewed	p.M118I	1.000	118	0%	90	31.1%	4	50%	possibly_damaging(0.784)	deleterious(0.03)	deleterious(0.658)	HMMPfam_p450,superfamily_Cytochrome_P450
PLEKHA7	144100	genome.wustl.edu	37	11	16811401	16811401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175058.4	-1	validated	p.L1026P	1.000	14	0%	24	37.5%	12	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PIK3C2A	5286	genome.wustl.edu	37	11	17134130	17134130	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002645.2	-1	validated	p.V1135	0.998	202	0%	182	26.4%	3	0%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
NUCB2	4925	genome.wustl.edu	37	11	17332456	17332456	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005013.2	+1	validated	p.E190*	1.000	271	0%	221	25.8%	11	0%	-	-	-	NULL
ABCC8	6833	genome.wustl.edu	37	11	17474821	17474821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000352.3	-1	reviewed	p.L341I	0.994	90	0%	72	41.7%	0	-	benign(0.003)	tolerated(0.36)	neutral(0.020)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
USH1C	10083	genome.wustl.edu	37	11	17544987	17544987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153676.3	-1	reviewed	p.F266L	1.000	104	0%	80	28.7%	2	0%	probably_damaging(0.989)	tolerated(0.37)	neutral(0.459)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
MYOD1	4654	genome.wustl.edu	37	11	17741357	17741357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002478.4	+1	reviewed	p.D10N	1.000	65	0%	23	17.4%	0	-	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	HMMPfam_Basic,HMMSmart_BASIC
KCNC1	3746	genome.wustl.edu	37	11	17794059	17794059	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001112741.1	+1	reviewed	p.K473T	1.000	219	0%	209	28.7%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
SERGEF	26297	genome.wustl.edu	37	11	17809945	17809945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012139.2	-1	validated	p.S355Y	1.000	88	0%	72	26.4%	26	23%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_RCC1/BLIP-II
SERGEF	26297	genome.wustl.edu	37	11	17981098	17981098	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012139.2	-1	validated	p.E310D	0.000	141	0.7%	187	30.5%	17	58.8%	benign(0)	tolerated(0.57)	neutral(0.006)	superfamily_RCC1/BLIP-II
SERGEF	26297	genome.wustl.edu	37	11	18010268	18010268	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012139.2	-1	validated	p.K240	0.996	142	0%	102	9.8%	25	12%	-	-	-	superfamily_RCC1/BLIP-II
SERGEF	26297	genome.wustl.edu	37	11	18017455	18017455	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012139.2	-1	validated	p.A170	0.230	99	0%	98	31.6%	15	40%	-	-	-	superfamily_RCC1/BLIP-II
TPH1	7166	genome.wustl.edu	37	11	18047155	18047155	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004179.2	-1	reviewed	p.G299	0.992	145	0%	157	29.9%	0	-	-	-	-	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
TPH1	7166	genome.wustl.edu	37	11	18051095	18051095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004179.2	-1	reviewed	p.R145Q	1.000	126	0%	110	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
MRGPRX3	117195	genome.wustl.edu	37	11	18158835	18158835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_054031.3	+1	reviewed	p.S29N	0.192	231	0%	209	34.4%	0	-	benign(0.215)	tolerated(0.24)	neutral(0.058)	superfamily_Family A G protein-coupled receptor-like
MRGPRX3	117195	genome.wustl.edu	37	11	18159457	18159457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_054031.3	+1	reviewed	p.W236C	0.001	128	0%	127	29.1%	0	-	benign(0.06)	tolerated(0.08)	neutral(0.304)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MRGPRX3	117195	genome.wustl.edu	37	11	18159596	18159596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_054031.3	+1	reviewed	p.N283H	0.000	161	0%	155	25.8%	0	-	possibly_damaging(0.795)	tolerated(0.11)	deleterious(0.570)	superfamily_Family A G protein-coupled receptor-like
MRGPRX4	117196	genome.wustl.edu	37	11	18195505	18195505	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_054032.3	+1	validated	p.I234M	0.002	105	0%	98	27.6%	0	-	possibly_damaging(0.705)	deleterious(0)	deleterious(0.699)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000189332	0	genome.wustl.edu	37	11	18231531	18231531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000340135	+1	known	p.T106M	1.000	100	0%	81	30.9%	0	-	benign(0.01)	tolerated(1)	neutral(0.001)	superfamily_Mitochondrial carrier
SAA4	6291	genome.wustl.edu	37	11	18253180	18253180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006512.2	-1	validated	p.D88Y	0.000	225	0%	211	29.9%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_SAA,HMMSmart_SM00197
ST13P5	144106	genome.wustl.edu	37	11	18284064	18284064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000391478	+1	known	p.P179L	1.000	258	0%	308	29.9%	73	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
HPS5	11234	genome.wustl.edu	37	11	18320415	18320415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181507.1	-1	reviewed	p.R363H	1.000	262	0%	199	34.2%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
LDHAL6A	160287	genome.wustl.edu	37	11	18497130	18497130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144071.1	+1	validated	p.G179D	0.862	134	0%	121	24%	0	-	benign(0.266)	tolerated(0.39)	neutral(0.044)	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
LDHAL6A	160287	genome.wustl.edu	37	11	18499251	18499251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144071.1	+1	validated	p.K265N	1.000	155	0%	132	28.8%	0	-	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
SPTY2D1	144108	genome.wustl.edu	37	11	18636919	18636919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194285.2	-1	validated	p.R301H	0.039	180	0%	153	37.3%	9	33.3%	benign(0.003)	tolerated(0.32)	neutral(0.024)	NULL
TMEM86A	144110	genome.wustl.edu	37	11	18722737	18722737	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153347.1	+1	provisional	p.F93	0.967	131	0%	103	36.9%	1	0%	-	-	-	HMMPfam_YhhN
TMEM86A	144110	genome.wustl.edu	37	11	18723508	18723508	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153347.1	+1	provisional	p.V225	0.002	98	0%	96	36.5%	4	0%	-	-	-	NULL
MRGPRX1	259249	genome.wustl.edu	37	11	18978441	18978441	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000433222	-1	known	p.V40	0.068	82	0%	83	39.8%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ZDHHC13	54503	genome.wustl.edu	37	11	19164615	19164615	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019028.2	+1	validated	p.E40*	0.998	95	0%	77	26%	7	14.2%	-	-	-	superfamily_Ankyrin repeat
ZDHHC13	54503	genome.wustl.edu	37	11	19174179	19174179	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019028.2	+1	validated	p.K274T	1.000	258	0%	194	26.8%	8	50%	benign(0.023)	tolerated(0.35)	neutral(0.022)	HMMSmart_SM00248
ZDHHC13	54503	genome.wustl.edu	37	11	19185873	19185873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019028.2	+1	validated	p.G420D	1.000	82	0%	98	36.7%	16	43.7%	possibly_damaging(0.493)	tolerated(0.5)	neutral(0.175)	HMMPfam_zf-DHHC
CSRP3	8048	genome.wustl.edu	37	11	19206520	19206520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127656.1	-1	reviewed	p.D163Y	1.000	138	0%	86	24.4%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
CSRP3	8048	genome.wustl.edu	37	11	19207823	19207823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127656.1	-1	reviewed	p.E118D	1.000	185	0%	104	26%	2	0%	benign(0)	tolerated(0.47)	neutral(0.011)	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NAV2	89797	genome.wustl.edu	37	11	20066702	20066702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182964.5	+1	validated	p.A1130T	0.018	183	0%	176	30.1%	6	50%	benign(0.013)	tolerated(0.46)	neutral(0.013)	NULL
NAV2	89797	genome.wustl.edu	37	11	20112500	20112500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182964.5	+1	validated	p.R1866H	1.000	165	0%	119	35.3%	19	21%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100289464	100289464	genome.wustl.edu	37	11	20136088	20136088	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343052.1	-1	model	p.L148	0.000	19	0%	16	50%	0	-	-	-	-	NULL
DBX1	120237	genome.wustl.edu	37	11	20180780	20180780	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029865.1	-1	provisional	p.F142	0.977	185	0%	135	31.1%	0	-	-	-	-	NULL
HTATIP2	10553	genome.wustl.edu	37	11	20385887	20385887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098520.1	+1	validated	p.L69S	0.987	84	0%	76	35.5%	20	25%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_NAD(P)-binding Rossmann-fold domains
PRMT3	10196	genome.wustl.edu	37	11	20411320	20411320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145166.1	+1	validated	p.H20R	0.983	84	0%	53	35.8%	2	100%	benign(0.202)	-	-	NULL
LOC645490	645490	genome.wustl.edu	37	11	20596568	20596568	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_928515.4	+1	model	p.E344*	1.000	74	0%	90	35.6%	0	-	-	-	-	NULL
SLC6A5	9152	genome.wustl.edu	37	11	20658730	20658730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004211.3	+1	reviewed	p.E584K	1.000	208	0%	156	24.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
NELL1	4745	genome.wustl.edu	37	11	20948913	20948913	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006157.3	+1	reviewed	p.C273	1.000	98	0%	119	34.5%	0	-	-	-	-	HMMPfam_VWC,HMMSmart_SM00214,HMMSmart_SM00215
NELL1	4745	genome.wustl.edu	37	11	20968900	20968900	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006157.3	+1	reviewed	p.I364L	1.000	338	0%	278	29.1%	0	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMSmart_SM00214
ANO5	203859	genome.wustl.edu	37	11	22225380	22225380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213599.2	+1	reviewed	p.S24Y	0.000	72	0%	59	25.4%	0	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
ANO5	203859	genome.wustl.edu	37	11	22249128	22249128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213599.2	+1	reviewed	p.R215I	1.000	289	0%	263	30.4%	0	-	possibly_damaging(0.84)	deleterious(0.03)	deleterious(0.686)	NULL
ANO5	203859	genome.wustl.edu	37	11	22281250	22281250	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213599.2	+1	reviewed	p.F531	1.000	135	0%	118	33.1%	0	-	-	-	-	NULL
GAS2	2620	genome.wustl.edu	37	11	22747869	22747869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143830.1	+1	reviewed	p.T100S	1.000	219	0%	167	27.5%	0	-	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
GAS2	2620	genome.wustl.edu	37	11	22833502	22833502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143830.1	+1	reviewed	p.M294I	1.000	192	0%	208	29.3%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
SVIP	258010	genome.wustl.edu	37	11	22848820	22848820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_148893.1	-1	provisional	p.R51I	0.999	366	0%	260	16.2%	48	20.8%	benign(0.17)	deleterious(0.02)	neutral(0.399)	NULL
LUZP2	338645	genome.wustl.edu	37	11	24750754	24750754	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009909.2	+1	validated	p.V34	0.844	145	0%	110	30.9%	0	-	-	-	-	NULL
MUC15	143662	genome.wustl.edu	37	11	26584689	26584689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135091.1	-1	validated	p.R300Q	1.000	230	0%	177	27.1%	0	-	unknown(0)	deleterious(0)	-	NULL
MUC15	143662	genome.wustl.edu	37	11	26587300	26587300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135091.1	-1	validated	p.A63T	0.000	147	0%	129	24.8%	0	-	possibly_damaging(0.507)	tolerated(0.33)	neutral(0.194)	NULL
ANO3	63982	genome.wustl.edu	37	11	26620414	26620414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031418.2	+1	validated	p.R514C	1.000	92	0%	86	31.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANO3	63982	genome.wustl.edu	37	11	26660717	26660717	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031418.2	+1	validated	p.D690	1.000	159	0%	119	30.3%	1	0%	-	-	-	NULL
BDNF	627	genome.wustl.edu	37	11	27679961	27679961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143810.1	-1	reviewed	p.A133T	1.000	222	0%	180	28.3%	2	100%	benign(0.003)	tolerated(0.34)	neutral(0.023)	NULL
KIF18A	81930	genome.wustl.edu	37	11	28045359	28045359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031217.3	-1	validated	p.S848Y	0.144	125	0%	76	13.2%	20	20%	benign(0.005)	deleterious(0.03)	neutral(0.364)	NULL
KCNA4	3739	genome.wustl.edu	37	11	30033130	30033130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002233.2	-1	reviewed	p.I366V	0.535	302	0%	369	30.4%	0	-	benign(0.002)	tolerated(0.55)	neutral(0.007)	superfamily_Voltage-gated potassium channels
KCNA4	3739	genome.wustl.edu	37	11	30033350	30033350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002233.2	-1	reviewed	p.Q292H	1.000	277	0%	364	30.8%	0	-	benign(0.018)	deleterious(0.03)	neutral(0.365)	NULL
DCDC5	100506627	genome.wustl.edu	37	11	30938451	30938451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343054.1	-1	model	p.L338F	0.019	88	0%	94	34%	0	-	benign(0.005)	tolerated(0.06)	neutral(0.323)	NULL
DCDC1	341019	genome.wustl.edu	37	11	31312310	31312310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181807.2	-1	validated	p.L282I	1.000	140	0%	122	36.1%	0	-	probably_damaging(0.981)	tolerated(0.18)	deleterious(0.481)	superfamily_SSF89837
DNAJC24	120526	genome.wustl.edu	37	11	31436446	31436446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181706.4	+1	validated	p.K67T	1.000	106	0%	73	42.5%	4	25%	possibly_damaging(0.932)	deleterious(0.02)	deleterious(0.762)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
CCDC73	493860	genome.wustl.edu	37	11	32636285	32636285	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008391.2	-1	validated	p.G527*	0.014	121	0%	121	24%	0	-	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32637592	32637592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008391.2	-1	validated	p.E423D	0.416	75	0%	80	40%	0	-	benign(0.072)	tolerated(0.34)	neutral(0.028)	NULL
QSER1	79832	genome.wustl.edu	37	11	32954118	32954118	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001076786.1	+1	provisional	p.Y309*	1.000	312	0%	224	26.8%	1	0%	-	-	-	NULL
QSER1	79832	genome.wustl.edu	37	11	32954911	32954911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001076786.1	+1	provisional	p.P574S	0.999	238	0.4%	198	28.3%	1	0%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
DEPDC7	91614	genome.wustl.edu	37	11	33047356	33047356	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077242.1	+1	validated	p.I75	0.998	131	0%	142	33.1%	0	-	-	-	-	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
DEPDC7	91614	genome.wustl.edu	37	11	33047572	33047572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077242.1	+1	validated	p.E147D	0.990	89	0%	80	36.2%	0	-	benign(0.014)	tolerated(0.26)	neutral(0.035)	"superfamily_""Winged helix"" DNA-binding domain"
CSTF3	1479	genome.wustl.edu	37	11	33129510	33129510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001326.2	-1	reviewed	p.D99N	1.000	58	0%	54	37%	6	0%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMSmart_SM00386,superfamily_TPR-like
HIPK3	10114	genome.wustl.edu	37	11	33308982	33308982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005734.3	+1	validated	p.K341T	1.000	288	0%	287	29.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HIPK3	10114	genome.wustl.edu	37	11	33358624	33358624	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005734.3	+1	validated	p.R409*	1.000	214	0%	128	32%	4	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C11orf41	25758	genome.wustl.edu	37	11	33565500	33565500	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012194.1	+1	validated	p.S500	0.087	282	0%	297	29.3%	0	-	-	-	-	NULL
C11orf41	25758	genome.wustl.edu	37	11	33566508	33566508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012194.1	+1	validated	p.A699V	0.001	113	0%	130	33.8%	0	-	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33682431	33682431	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012194.1	+1	validated	p.F1719	0.994	47	0%	54	33.3%	1	0%	-	-	-	NULL
NAT10	55226	genome.wustl.edu	37	11	34145924	34145924	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024662.2	+1	validated	p.R362*	1.000	168	0%	159	29.6%	12	0%	-	-	-	HMMPfam_DUF699
NAT10	55226	genome.wustl.edu	37	11	34154665	34154665	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024662.2	+1	validated	p.L570	0.999	155	0%	144	31.2%	17	11.7%	-	-	-	NULL
PDHX	8050	genome.wustl.edu	37	11	35006231	35006231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003477.2	+1	reviewed	p.D380Y	1.000	227	0%	219	34.7%	40	40%	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	HMMPfam_2-oxoacid_dh,superfamily_SSF52777
CD44	960	genome.wustl.edu	37	11	35226171	35226171	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000428726	+1	known	p.R400Q	0.037	129	0%	115	29.6%	3	33.3%	-	-	-	NULL
SLC1A2	6506	genome.wustl.edu	37	11	35327698	35327698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004171.3	-1	reviewed	p.T218I	0.992	143	0%	145	18.6%	0	-	benign(0.412)	tolerated(0.06)	neutral(0.456)	HMMPfam_SDF
SLC1A2	6506	genome.wustl.edu	37	11	35338953	35338953	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004171.3	-1	reviewed	p.K43T	1.000	253	0%	248	26.2%	1	0%	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
TRIM44	54765	genome.wustl.edu	37	11	35684884	35684884	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017583.4	+1	reviewed	p.G75	0.000	44	0%	43	27.9%	4	0%	-	-	-	NULL
COMMD9	29099	genome.wustl.edu	37	11	36302375	36302375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014186.3	-1	validated	p.D22Y	1.000	198	0%	201	31.3%	45	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCaRG
TRAF6	7189	genome.wustl.edu	37	11	36511654	36511654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004620.2	-1	reviewed	p.L435I	1.000	363	0%	315	32.1%	5	60%	possibly_damaging(0.855)	tolerated(0.08)	deleterious(0.630)	HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like
RAG1	5896	genome.wustl.edu	37	11	36596127	36596127	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000448.2	+1	reviewed	p.E425*	1.000	130	0%	103	33%	0	-	-	-	-	NULL
RAG2	5897	genome.wustl.edu	37	11	36615130	36615130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000536.3	-1	reviewed	p.L197I	1.000	280	0%	243	30.9%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_RAG2
LRRC4C	57689	genome.wustl.edu	37	11	40137471	40137471	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020929.1	-1	validated	p.A124	0.133	117	0%	144	29.2%	1	0%	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
LOC399881	399881	genome.wustl.edu	37	11	43284628	43284628	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_040375.2	-1	model	NULL	1.000	98	0%	119	14.3%	0	-	-	-	-	-
LOC399881	399881	genome.wustl.edu	37	11	43284792	43284792	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_040375.2	-1	model	NULL	1.000	30	0%	38	28.9%	0	-	-	-	-	-
TTC17	55761	genome.wustl.edu	37	11	43413475	43413475	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018259.5	+1	validated	p.G212	0.982	177	0%	158	29.1%	4	50%	-	-	-	NULL
MIR129-2	406918	genome.wustl.edu	37	11	43603018	43603018	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000362207	+1	known	NULL	1.000	35	0%	36	47.2%	0	-	-	-	-	-
HSD17B12	51144	genome.wustl.edu	37	11	43876335	43876335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016142.2	+1	validated	p.P252L	0.332	190	0%	172	39%	22	0%	possibly_damaging(0.498)	deleterious(0)	deleterious(0.611)	NULL
ALKBH3	221120	genome.wustl.edu	37	11	43940668	43940668	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139178.3	+1	validated	p.A250	0.049	125	0%	87	28.7%	9	0%	-	-	-	NULL
ACCSL	390110	genome.wustl.edu	37	11	44074548	44074548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031854.2	+1	validated	p.V293A	0.000	131	0%	111	44.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ACCSL	390110	genome.wustl.edu	37	11	44079906	44079906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031854.2	+1	validated	p.R456Q	0.999	155	0%	140	27.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
EXT2	2132	genome.wustl.edu	37	11	44135787	44135787	+	Missense_Mutation	SNP	G	G	A	rs121918280		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000401.3	+1	reviewed	p.D240N	1.000	430	0.2%	391	28.4%	28	53.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exostosin
ALX4	60529	genome.wustl.edu	37	11	44286499	44286499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021926.3	-1	reviewed	p.E381K	1.000	16	0.000	9	0.556	0	-	possibly_damaging(0.888)	tolerated(0.1)	deleterious(0.634)	NULL
CD82	3732	genome.wustl.edu	37	11	44640211	44640211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002231.3	+1	reviewed	p.A222T	0.953	30	0%	20	25%	53	15%	benign(0.03)	tolerated(0.5)	neutral(0.011)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
TSPAN18	90139	genome.wustl.edu	37	11	44939542	44939542	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130783.4	+1	validated	p.I93S	1.000	82	0%	42	28.6%	0	-	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	HMMPfam_Tetraspannin
CHST1	8534	genome.wustl.edu	37	11	45671529	45671529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003654.4	-1	validated	p.E315D	1.000	72	0%	69	46.4%	13	30.7%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
PHF21A	51317	genome.wustl.edu	37	11	45971793	45971793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001101802.1	-1	validated	p.V370L	1.000	151	0%	98	25.5%	4	50%	possibly_damaging(0.543)	tolerated(0.14)	neutral(0.433)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46455066	46455066	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017749.2	-1	validated	p.V888	1.000	58	0%	52	34.6%	17	23.5%	-	-	-	NULL
ZNF408	79797	genome.wustl.edu	37	11	46726735	46726735	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024741.2	+1	validated	p.P495	0.978	43	0%	39	23.1%	18	33.3%	-	-	-	superfamily_SSF57667
CKAP5	9793	genome.wustl.edu	37	11	46811666	46811666	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008938.1	-1	validated	p.N612T	1.000	188	0%	149	31.5%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
LRP4	4038	genome.wustl.edu	37	11	46905518	46905518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002334.3	-1	reviewed	p.R839Q	1.000	168	0%	134	23.1%	0	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
ARFGAP2	84364	genome.wustl.edu	37	11	47188436	47188436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032389.3	-1	provisional	p.A403T	1.000	178	0%	132	32.6%	51	41.1%	unknown(0)	tolerated(0.44)	-	NULL
PACSIN3	29763	genome.wustl.edu	37	11	47203980	47203980	+	Missense_Mutation	SNP	C	C	T	rs147642333	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016223.4	-1	reviewed	p.R62Q	1.000	30	0%	34	44.1%	33	36.3%	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	HMMPfam_FCH,HMMSmart_FCH
ACP2	53	genome.wustl.edu	37	11	47267035	47267035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001610.2	-1	reviewed	p.S180F	0.000	250	0%	243	33.3%	47	23.4%	benign(0.025)	tolerated(0.08)	neutral(0.301)	HMMPfam_Acid_phosphat_A,superfamily_SSF53254
CELF1	10658	genome.wustl.edu	37	11	47498893	47498893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025596.2	-1	reviewed	p.A283V	1.000	114	0%	120	31.7%	26	34.6%	unknown(0)	tolerated(0.25)	-	NULL
MTCH2	23788	genome.wustl.edu	37	11	47656235	47656235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014342.3	-1	validated	p.V120I	0.989	50	0%	63	30.2%	231	43.7%	benign(0.061)	tolerated(0.37)	neutral(0.023)	superfamily_Mitochondrial carrier
AGBL2	79841	genome.wustl.edu	37	11	47711785	47711785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024783.2	-1	validated	p.I492V	0.804	246	0%	332	28.9%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
NUP160	23279	genome.wustl.edu	37	11	47833688	47833688	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015231.1	-1	validated	p.I723	0.991	167	0%	177	35%	5	20%	-	-	-	NULL
PTPRJ	5795	genome.wustl.edu	37	11	48161067	48161067	+	Missense_Mutation	SNP	G	G	A	rs181029182	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002843.3	+1	reviewed	p.E728K	0.009	108	0%	95	28.4%	9	77.7%	possibly_damaging(0.748)	tolerated(0.36)	neutral(0.295)	HMMSmart_FN3
PTPRJ	5795	genome.wustl.edu	37	11	48185153	48185153	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002843.3	+1	reviewed	p.P1234	0.000	175	0%	191	35.6%	9	33.3%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
OR4X1	390113	genome.wustl.edu	37	11	48285433	48285433	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004726.1	+1	provisional	p.V7	0.992	160	0%	166	21.7%	0	-	-	-	-	superfamily_SSF81321
OR4C3	256144	genome.wustl.edu	37	11	48346598	48346598	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004702.1	+1	provisional	p.E36*	0.027	518	0%	497	14.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR4C3	256144	genome.wustl.edu	37	11	48347462	48347462	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004702.1	+1	provisional	p.R324	0.235	245	0%	231	26%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
LOC120824	120824	genome.wustl.edu	37	11	48997082	48997082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_062300.6	-1	model	p.L443F	0.136	237	0%	174	28.2%	0	-	-	-	-	HMMPfam_SPRY
LOC283116	283116	genome.wustl.edu	37	11	49053296	49053296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_208043.4	+1	model	p.L49I	0.002	110	0%	117	25.6%	0	-	possibly_damaging(0.597)	tolerated(0.48)	neutral(0.217)	HMMSmart_RING,superfamily_SSF57850
ENSG00000219061	0	genome.wustl.edu	37	11	49855135	49855135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000405176	-1	known	p.D307Y	0.050	240	0%	286	31.8%	0	-	-	-	-	NULL
OR4C12	283093	genome.wustl.edu	37	11	50003590	50003590	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005270.2	-1	validated	p.G150*	0.641	561	0%	395	28.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4A5	81318	genome.wustl.edu	37	11	51412144	51412144	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005272.3	-1	validated	p.F84	0.000	229	0%	198	32.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4A16	81327	genome.wustl.edu	37	11	55111083	55111083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005274.1	+1	provisional	p.R136Q	0.000	314	0%	278	28.8%	0	-	benign(0.238)	tolerated(0.3)	neutral(0.053)	HMMPfam_7tm_1,superfamily_SSF81321
OR4A16	81327	genome.wustl.edu	37	11	55111517	55111517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005274.1	+1	provisional	p.N281H	1.000	145	0%	138	31.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR4A15	81328	genome.wustl.edu	37	11	55136024	55136024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005275.1	+1	provisional	p.V222A	0.000	260	0%	322	31.1%	0	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000181950	0	genome.wustl.edu	37	11	55234573	55234573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000314689	+1	known	p.E14D	0.103	104	0%	106	32.1%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000181950	0	genome.wustl.edu	37	11	55234731	55234731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000314689	+1	known	p.Y67C	0.002	121	0%	112	25.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000181943	0	genome.wustl.edu	37	11	55259575	55259575	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000314657	+1	known	p.L286R	0.045	156	0%	169	31.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR4C11	219429	genome.wustl.edu	37	11	55371500	55371500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004700.1	-1	provisional	p.A117V	0.999	183	0.5%	170	23.5%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR4C11	219429	genome.wustl.edu	37	11	55371766	55371766	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004700.1	-1	provisional	p.I28	0.179	187	0%	170	28.2%	0	-	-	-	-	superfamily_SSF81321
OR4S2	219431	genome.wustl.edu	37	11	55418838	55418838	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004059.2	+1	validated	p.H153	0.001	480	0%	456	11.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C6	219432	genome.wustl.edu	37	11	55433152	55433152	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004704.1	+1	provisional	p.N170	0.001	481	0%	373	27.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5D13	390142	genome.wustl.edu	37	11	55541203	55541203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001967.1	+1	provisional	p.S97Y	0.000	361	0%	317	30.6%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5D14	219436	genome.wustl.edu	37	11	55563190	55563190	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004735.1	+1	provisional	p.I53M	0.000	228	0%	178	32%	0	-	benign(0.021)	tolerated(0.34)	neutral(0.024)	HMMPfam_7tm_1,superfamily_SSF81321
OR5L1	219437	genome.wustl.edu	37	11	55579361	55579361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004738.1	+1	provisional	p.V140A	0.001	203	0%	222	23%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D16	390144	genome.wustl.edu	37	11	55607057	55607057	+	Missense_Mutation	SNP	C	C	A	rs61896326	byCluster;byFrequency;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005496.1	+1	provisional	p.S277Y	0.000	292	0%	238	30.3%	0	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	HMMPfam_7tm_1,superfamily_SSF81321
OR5W2	390148	genome.wustl.edu	37	11	55681301	55681301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001960.1	-1	provisional	p.G253E	0.857	168	0%	156	29.5%	0	-	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	HMMPfam_7tm_1,superfamily_SSF81321
OR5W2	390148	genome.wustl.edu	37	11	55681787	55681787	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001960.1	-1	provisional	p.S91*	0.182	203	0%	195	35.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703049	55703049	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006637.1	-1	reviewed	p.I276	0.052	84	0%	92	30.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10AG1	282770	genome.wustl.edu	37	11	55735819	55735819	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005491.1	-1	provisional	p.K41Q	0.000	225	0%	173	40.5%	0	-	benign(0.022)	tolerated(0.29)	neutral(0.030)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10AG1	282770	genome.wustl.edu	37	11	55735876	55735876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005491.1	-1	provisional	p.F22V	0.085	194	0%	152	21.1%	0	-	probably_damaging(0.998)	tolerated(0.55)	deleterious(0.481)	superfamily_Family A G protein-coupled receptor-like
OR10AG1	282770	genome.wustl.edu	37	11	55735895	55735895	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005491.1	-1	provisional	p.H15Q	0.000	174	0%	129	37.2%	0	-	benign(0)	tolerated(1)	-	superfamily_Family A G protein-coupled receptor-like
OR5F1	338674	genome.wustl.edu	37	11	55761268	55761268	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003697.1	-1	provisional	p.Y278	0.090	175	0%	188	36.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5AS1	219447	genome.wustl.edu	37	11	55798147	55798147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001921.1	+1	provisional	p.F85V	0.055	208	0%	172	29.1%	0	-	benign(0.117)	deleterious(0.01)	neutral(0.415)	HMMPfam_7tm_1,superfamily_SSF81321
OR8H3	390152	genome.wustl.edu	37	11	55890218	55890218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005201.1	+1	provisional	p.A124T	0.803	427	0%	448	29.2%	0	-	benign(0.005)	tolerated(0.07)	neutral(0.319)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR8H3	390152	genome.wustl.edu	37	11	55890747	55890747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005201.1	+1	provisional	p.A300V	0.377	282	0%	244	30.3%	0	-	possibly_damaging(0.641)	deleterious(0.01)	deleterious(0.630)	superfamily_SSF81321
OR8J3	81168	genome.wustl.edu	37	11	55904694	55904694	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004064.1	-1	provisional	p.S167	0.000	129	0%	143	37.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5J2	282775	genome.wustl.edu	37	11	55944758	55944758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005492.1	+1	provisional	p.A222D	0.000	223	0%	168	30.4%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T2	219464	genome.wustl.edu	37	11	55999897	55999897	+	Silent	SNP	G	G	T	rs7122000	byCluster;byFrequency;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004746.1	-1	provisional	p.I255	0.030	382	0%	359	32.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56020531	56020531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004747.1	+1	provisional	p.L286I	0.000	238	0%	265	30.2%	0	-	probably_damaging(0.99)	tolerated(0.53)	neutral(0.449)	HMMPfam_7tm_1,superfamily_SSF81321
OR8H1	219469	genome.wustl.edu	37	11	56057553	56057553	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000395195	-1	known	e2-2	0.000	132	0%	106	24.5%	0	-	-	-	-	-
OR8H1	219469	genome.wustl.edu	37	11	56057884	56057884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005199.1	-1	provisional	p.S219P	0.002	207	0%	169	25.4%	0	-	possibly_damaging(0.434)	deleterious(0.01)	deleterious(0.547)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8J1	219477	genome.wustl.edu	37	11	56128140	56128140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005205.1	+1	provisional	p.L140I	0.000	202	0%	250	32%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8J1	219477	genome.wustl.edu	37	11	56128488	56128488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005205.1	+1	provisional	p.L256I	0.001	331	0%	300	29.3%	0	-	benign(0.006)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5R1	219479	genome.wustl.edu	37	11	56184803	56184803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004744.1	-1	provisional	p.K302N	0.473	223	0%	181	29.3%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	superfamily_SSF81321
ENSG00000230416	0	genome.wustl.edu	37	11	56216752	56216752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000415874	+1	known	p.G202D	0.001	259	0%	229	31.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M9	390162	genome.wustl.edu	37	11	56230390	56230390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004743.1	-1	provisional	p.G163D	0.002	148	0%	140	30.7%	0	-	possibly_damaging(0.813)	tolerated(0.29)	neutral(0.336)	HMMPfam_7tm_1,superfamily_SSF81321
OR5M11	219487	genome.wustl.edu	37	11	56310489	56310489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005245.1	-1	provisional	p.S82L	0.693	241	0%	259	29%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5M10	390167	genome.wustl.edu	37	11	56344370	56344370	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004741.1	-1	provisional	p.V276	0.001	381	0%	358	30.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5M1	390168	genome.wustl.edu	37	11	56380043	56380043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004740.1	-1	provisional	p.K312N	0.059	262	0%	252	32.5%	0	-	possibly_damaging(0.487)	tolerated(0.24)	neutral(0.200)	NULL
OR5AK3P	81228	genome.wustl.edu	37	11	56738738	56738738	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000326876	+1	known	p.C72G	0.770	57	1.8%	56	37.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LRRC55	219527	genome.wustl.edu	37	11	56954756	56954756	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005210.2	+1	validated	p.V276	0.316	141	0%	114	34.2%	0	-	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
SLC43A1	8501	genome.wustl.edu	37	11	57263628	57263628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003627.4	-1	provisional	p.D190N	0.998	52	0%	46	26.1%	4	0%	benign(0.31)	tolerated(0.07)	neutral(0.415)	superfamily_MFS general substrate transporter
MED19	219541	genome.wustl.edu	37	11	57472283	57472283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153450.1	-1	provisional	p.P160Q	1.000	192	0%	145	32.4%	36	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Med19
CTNND1	1500	genome.wustl.edu	37	11	57561554	57561554	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085458.1	+1	validated	e2+1	1.000	114	0%	88	39.8%	1	100%	-	-	-	-
CTNND1	1500	genome.wustl.edu	37	11	57569579	57569579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085458.1	+1	validated	p.K444T	1.000	576	0%	530	27.7%	45	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
CTNND1	1500	genome.wustl.edu	37	11	57569630	57569630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085458.1	+1	validated	p.R461Q	1.000	620	0%	540	29.4%	46	56.5%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
OR6Q1	219952	genome.wustl.edu	37	11	57798553	57798553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005186.2	+1	validated	p.E43D	0.986	454	0%	457	33%	0	-	possibly_damaging(0.783)	tolerated(0.16)	neutral(0.352)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6Q1	219952	genome.wustl.edu	37	11	57798706	57798706	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005186.2	+1	validated	p.K94	0.007	357	0%	311	34.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR9I1	219954	genome.wustl.edu	37	11	57886520	57886520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005211.1	-1	validated	p.T133A	0.001	133	0%	131	33.6%	0	-	benign(0.011)	tolerated(0.34)	neutral(0.024)	HMMPfam_7tm_1,superfamily_SSF81321
OR9I1	219954	genome.wustl.edu	37	11	57886614	57886614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005211.1	-1	validated	p.F101L	0.997	150	0%	171	26.9%	0	-	probably_damaging(0.998)	tolerated(0.5)	deleterious(0.484)	HMMPfam_7tm_1,superfamily_SSF81321
OR9Q1	219956	genome.wustl.edu	37	11	57946950	57946950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005212.3	+1	validated	p.F12L	0.980	260	0%	262	28.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF81321
OR9Q2	219957	genome.wustl.edu	37	11	57958140	57958140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005283.2	+1	validated	p.Y60H	1.000	139	0%	168	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR9Q2	219957	genome.wustl.edu	37	11	57958556	57958556	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005283.2	+1	validated	p.V198	0.724	194	0%	148	31.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR9Q2	219957	genome.wustl.edu	37	11	57958670	57958670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005283.2	+1	validated	p.K236N	1.000	182	0%	167	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
LPXN	9404	genome.wustl.edu	37	11	58322355	58322355	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143995.1	-1	reviewed	p.L98	0.988	126	0%	97	29.9%	6	0%	-	-	-	NULL
ZFP91	80829	genome.wustl.edu	37	11	58380282	58380282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053023.3	+1	reviewed	p.G319V	1.000	258	0%	192	26.6%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CNTF	1270	genome.wustl.edu	37	11	58391729	58391729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000614.3	+1	reviewed	p.L113I	0.029	226	0%	231	10.4%	0	-	benign(0.012)	tolerated(0.13)	neutral(0.253)	HMMPfam_CNTF,superfamily_4-helical cytokines
CNTF	1270	genome.wustl.edu	37	11	58391858	58391858	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000614.3	+1	reviewed	p.L156	1.000	275	0%	307	24.4%	0	-	-	-	-	HMMPfam_CNTF,superfamily_4-helical cytokines
GLYAT	10249	genome.wustl.edu	37	11	58477632	58477632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201648.2	-1	validated	p.E166D	0.026	103	0%	104	23.1%	0	-	benign(0.054)	tolerated(0.13)	neutral(0.256)	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
GLYATL2	219970	genome.wustl.edu	37	11	58607049	58607049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145016.3	-1	validated	p.L13M	0.002	211	0%	167	30.5%	7	14.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Gly_acyl_tr_N
FAM111B	374393	genome.wustl.edu	37	11	58892748	58892748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198947.3	+1	validated	p.T393M	0.000	267	0%	385	28.6%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
FAM111A	63901	genome.wustl.edu	37	11	58919799	58919799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142519.1	+1	validated	p.T220A	1.000	246	0%	193	28%	2	50%	possibly_damaging(0.601)	deleterious(0.02)	deleterious(0.591)	NULL
DTX4	23220	genome.wustl.edu	37	11	58949373	58949373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015177.1	+1	validated	p.D125N	1.000	154	0.6%	133	29.3%	9	55.5%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_WWE,HMMSmart_SM00678
OR5A1	219982	genome.wustl.edu	37	11	59210738	59210738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004728.1	+1	provisional	p.T33A	0.448	399	0%	386	30.6%	0	-	benign(0.085)	deleterious(0.03)	neutral(0.370)	superfamily_SSF81321
OR4D6	219983	genome.wustl.edu	37	11	59225186	59225186	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004708.1	+1	provisional	p.F251	0.002	163	0%	178	33.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4D11	219986	genome.wustl.edu	37	11	59271839	59271839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004706.1	+1	provisional	p.A264V	0.022	385	0%	381	28.6%	0	-	benign(0.007)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_SSF81321
STX3	6809	genome.wustl.edu	37	11	59540732	59540732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004177.4	+1	reviewed	p.D27N	0.998	428	0%	296	27%	9	77.7%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00503
STX3	6809	genome.wustl.edu	37	11	59560949	59560949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004177.4	+1	reviewed	p.D213N	1.000	148	0.7%	126	23%	20	20%	benign(0.384)	tolerated(0.08)	neutral(0.422)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
TCN1	6947	genome.wustl.edu	37	11	59633911	59633911	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001062.3	-1	reviewed	p.G11	0.883	287	0%	161	26.7%	1	0%	-	-	-	HMMPfam_Cobalamin_bind
MS4A3	932	genome.wustl.edu	37	11	59828745	59828745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006138.4	+1	reviewed	p.D38Y	0.006	260	0%	295	14.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MS4A2	2206	genome.wustl.edu	37	11	59857893	59857893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000139.3	+1	reviewed	p.D91Y	0.000	297	0%	273	26.4%	0	-	probably_damaging(0.979)	tolerated(0.08)	deleterious(0.722)	HMMPfam_CD20
MS4A6A	64231	genome.wustl.edu	37	11	59947427	59947427	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152852.1	-1	reviewed	p.I53	0.639	185	0%	168	35.7%	33	0%	-	-	-	NULL
MS4A4E	643680	genome.wustl.edu	37	11	59997418	59997418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_931886.3	-1	model	p.E60D	0.978	114	0%	88	29.5%	0	-	unknown(0)	deleterious(0)	-	NULL
MS4A4A	51338	genome.wustl.edu	37	11	60068510	60068510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_148975.1	+1	reviewed	p.I123L	0.052	79	0%	62	21%	22	0%	benign(0.06)	tolerated(0.28)	neutral(0.036)	HMMPfam_CD20
MS4A7	58475	genome.wustl.edu	37	11	60161315	60161315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021201.4	+1	reviewed	p.S235Y	0.002	293	0%	237	24.5%	4	0%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
MS4A1	931	genome.wustl.edu	37	11	60229997	60229997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021950.3	+1	reviewed	p.K50N	0.907	224	0%	167	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MS4A10	341116	genome.wustl.edu	37	11	60567343	60567343	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206893.3	+1	validated	p.V255	0.001	65	0%	61	36.1%	0	-	-	-	-	NULL
CCDC86	79080	genome.wustl.edu	37	11	60615443	60615443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024098.3	+1	validated	p.R269W	1.000	134	0%	164	29.9%	27	37%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZP1	22917	genome.wustl.edu	37	11	60636705	60636705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207341.2	+1	validated	p.S95L	0.941	30	0%	19	36.8%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
ENSG00000251217	0	genome.wustl.edu	37	11	60785203	60785203	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000505761	-1	known	NULL	0.000	128	0%	102	33.3%	0	-	-	-	-	-
DDB1	1642	genome.wustl.edu	37	11	61079317	61079317	+	Missense_Mutation	SNP	C	C	T	rs190054116	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001923.3	-1	validated	p.R739H	1.000	129	0%	159	30.2%	176	44.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
DDB1	1642	genome.wustl.edu	37	11	61083828	61083828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001923.3	-1	validated	p.E447K	1.000	537	0%	545	32.7%	66	34.8%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
CYBASC3	220002	genome.wustl.edu	37	11	61121341	61121341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153611.4	-1	validated	p.T103M	0.000	50	0%	64	29.7%	59	42.3%	possibly_damaging(0.501)	deleterious(0.01)	deleterious(0.573)	HMMPfam_Cytochrom_B561,HMMSmart_B561
SDHAF2	54949	genome.wustl.edu	37	11	61205104	61205104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017841.1	+1	provisional	p.A15D	0.000	239	0%	262	11.1%	29	10.3%	possibly_damaging(0.681)	deleterious(0.01)	deleterious(0.649)	NULL
DAGLA	747	genome.wustl.edu	37	11	61495691	61495691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006133.1	+1	validated	p.D235N	1.000	99	0%	81	28.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C11orf10	746	genome.wustl.edu	37	11	61557967	61557967	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014206.3	-1	validated	p.F37	1.000	22	0%	17	35.3%	306	39.2%	-	-	-	HMMPfam_UPF0197
FADS1	3992	genome.wustl.edu	37	11	61578253	61578253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013402.4	-1	reviewed	p.F295L	1.000	108	0%	72	37.5%	26	46.1%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_FA_desaturase
SCGB1D1	10648	genome.wustl.edu	37	11	61960885	61960885	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006552.1	+1	reviewed	p.E86	0.000	172	0%	122	30.3%	5	0%	-	-	-	HMMPfam_Uteroglobin,HMMSmart_UTG,superfamily_Secretoglobin
SCGB1D2	10647	genome.wustl.edu	37	11	62010872	62010872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006551.3	+1	reviewed	p.V56A	0.000	442	0%	505	30.3%	28	53.5%	possibly_damaging(0.877)	tolerated(0.16)	neutral(0.401)	HMMPfam_Uteroglobin,HMMSmart_UTG,superfamily_Secretoglobin
SCGB2A2	4250	genome.wustl.edu	37	11	62040452	62040452	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002411.2	+1	provisional	p.L89	0.000	98	0%	71	19.7%	0	-	-	-	-	HMMPfam_Uteroglobin,superfamily_Uteroglobin-like
AHNAK	79026	genome.wustl.edu	37	11	62288806	62288806	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001620.1	-1	validated	p.I4361	0.369	561	0.4%	470	28.3%	49	38.7%	-	-	-	HMMPfam_CheC
AHNAK	79026	genome.wustl.edu	37	11	62291198	62291198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001620.1	-1	validated	p.S3564Y	0.785	468	0%	331	34.1%	11	54.5%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62294185	62294185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001620.1	-1	validated	p.K2568N	0.999	457	0%	364	27.7%	2	50%	probably_damaging(0.99)	tolerated(0.72)	neutral(0.443)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62296933	62296933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001620.1	-1	validated	p.K1652N	0.719	436	0%	396	14.1%	2	0%	probably_damaging(0.958)	tolerated(0.19)	neutral(0.451)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62298676	62298676	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001620.1	-1	validated	p.D1071	0.996	203	0%	205	33.2%	1	0%	-	-	-	NULL
TUT1	64852	genome.wustl.edu	37	11	62346503	62346503	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022830.2	-1	reviewed	e5-1	0.998	15	0%	53	34%	0	-	-	-	-	-
NXF1	10482	genome.wustl.edu	37	11	62561846	62561846	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006362.4	-1	reviewed	p.F548	0.590	109	0%	100	29%	64	56.2%	-	-	-	superfamily_SSF54427
SLC3A2	6520	genome.wustl.edu	37	11	62650397	62650397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012661.1	+1	reviewed	p.D338Y	1.000	96	0%	115	24.3%	266	36.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
SLC22A6	9356	genome.wustl.edu	37	11	62751803	62751803	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004790.3	-1	reviewed	p.I120	0.998	116	0%	103	45.6%	0	-	-	-	-	NULL
SLC22A8	9376	genome.wustl.edu	37	11	62766448	62766448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004254.3	-1	reviewed	p.R236C	1.000	209	0%	173	31.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A24	283238	genome.wustl.edu	37	11	62911070	62911070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136506.1	-1	validated	p.D61G	0.000	61	0%	59	23.7%	0	-	benign(0.008)	tolerated(0.34)	neutral(0.023)	NULL
SLC22A25	387601	genome.wustl.edu	37	11	62951248	62951248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199352.3	-1	validated	p.K291T	0.441	324	0%	296	28.7%	0	-	unknown(0)	tolerated(0.06)	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A25	387601	genome.wustl.edu	37	11	62996802	62996802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199352.3	-1	validated	p.T108M	0.000	221	0%	173	37.6%	0	-	benign(0.053)	tolerated(0.32)	neutral(0.028)	NULL
SLC22A10	387775	genome.wustl.edu	37	11	63064921	63064921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039752.3	+1	validated	p.S218Y	0.000	522	0%	406	33.7%	0	-	possibly_damaging(0.459)	tolerated(1)	neutral(0.150)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PLA2G16	11145	genome.wustl.edu	37	11	63342430	63342430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128203.1	-1	validated	p.R159Q	0.882	165	0%	159	27.7%	12	0%	benign(0.336)	tolerated(0.08)	neutral(0.406)	NULL
ATL3	25923	genome.wustl.edu	37	11	63419976	63419976	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015459.3	-1	validated	p.I159	1.000	126	0%	134	30.6%	20	40%	-	-	-	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
RTN3	10313	genome.wustl.edu	37	11	63472369	63472369	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201429.1	+1	validated	p.S63	1.000	176	0%	160	40.6%	0	-	-	-	-	NULL
RTN3	10313	genome.wustl.edu	37	11	63486654	63486654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201428.1	+1	validated	p.S208Y	0.423	104	0%	104	26.9%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
RTN3	10313	genome.wustl.edu	37	11	63487531	63487531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201428.1	+1	validated	p.I500M	0.060	144	0.7%	126	29.4%	1	0%	possibly_damaging(0.701)	deleterious(0.01)	deleterious(0.657)	NULL
RTN3	10313	genome.wustl.edu	37	11	63525732	63525732	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201430.1	+1	validated	p.S237	0.829	95	0%	70	30%	199	46.7%	unknown(0)	-	-	NULL
MARK2	2011	genome.wustl.edu	37	11	63668288	63668288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039469.2	+1	reviewed	p.E276K	1.000	435	0%	343	31.5%	24	41.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_Kinase_like
PLCB3	5331	genome.wustl.edu	37	11	64033507	64033507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000932.2	+1	reviewed	p.R1062I	0.658	26	0%	19	26.3%	40	60%	benign(0.011)	tolerated(0.15)	neutral(0.241)	HMMPfam_PLC-beta_C
CCDC88B	283234	genome.wustl.edu	37	11	64124642	64124642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000359902	+1	known	p.K607N	0.001	23	0%	21	38.1%	23	34.7%	unknown(0)	-	-	NULL
NRXN2	9379	genome.wustl.edu	37	11	64387803	64387803	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015080.2	-1	reviewed	p.S1405	0.435	8	0.000	7	0.571	6	0%	-	-	-	NULL
SF1	7536	genome.wustl.edu	37	11	64540926	64540926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004630.3	-1	reviewed	p.G71D	1.000	29	0%	38	15.8%	76	26.3%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
MAP4K2	5871	genome.wustl.edu	37	11	64567683	64567683	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004579.2	-1	reviewed	p.P271	0.041	23	0%	12	33.3%	10	30%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CDC42BPG	55561	genome.wustl.edu	37	11	64594857	64594857	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017525.2	-1	validated	p.F1388	0.998	61	0%	65	24.6%	16	25%	-	-	-	NULL
ATG2A	23130	genome.wustl.edu	37	11	64681310	64681310	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015104.2	-1	validated	p.V191	0.911	23	0%	25	20%	4	25%	-	-	-	NULL
C11orf85	283129	genome.wustl.edu	37	11	64717291	64717291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037225.1	-1	predicted	p.E91D	0.059	138	0%	132	28%	0	-	benign(0.105)	deleterious(0.04)	neutral(0.357)	NULL
FAU	2197	genome.wustl.edu	37	11	64889277	64889277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000434372	-1	known	p.L2I	0.060	28	0%	25	36%	1810	37.8%	-	-	-	NULL
SYVN1	84447	genome.wustl.edu	37	11	64900211	64900211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172230.2	-1	reviewed	p.R140H	1.000	110	0.9%	112	27.7%	33	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DPF2	5977	genome.wustl.edu	37	11	65107911	65107911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006268.3	+1	reviewed	p.R30C	1.000	226	0%	439	22.1%	18	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FRMD8	83786	genome.wustl.edu	37	11	65172523	65172523	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031904.3	+1	validated	p.I420	0.994	16	0%	11	72.7%	12	41.6%	-	-	-	NULL
MAP3K11	4296	genome.wustl.edu	37	11	65373292	65373292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002419.3	-1	reviewed	p.Y591H	1.000	46	0%	29	31%	29	44.8%	possibly_damaging(0.528)	deleterious(0)	deleterious(0.623)	NULL
KAT5	10524	genome.wustl.edu	37	11	65482335	65482335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182710.1	+1	reviewed	p.R328H	1.000	164	0.6%	127	33.9%	86	43%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
SNX32	254122	genome.wustl.edu	37	11	65617981	65617981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152760.2	+1	validated	p.R152C	0.836	41	0%	55	34.5%	0	-	benign(0.155)	deleterious(0.05)	neutral(0.359)	HMMPfam_PX,superfamily_PX domain
BANF1	8815	genome.wustl.edu	37	11	65770786	65770786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143985.1	+1	reviewed	p.S22N	1.000	50	0%	44	43.2%	270	41.4%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_BAF,superfamily_Barrier-to-autointegration factor BAF
ENSG00000245156	0	genome.wustl.edu	37	11	66039454	66039454	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000501708	-1	known	NULL	0.004	131	0%	164	32.3%	0	-	-	-	-	-
CNIH2	254263	genome.wustl.edu	37	11	66050209	66050209	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182553.1	+1	provisional	p.E52	1.000	6	0.000	15	0.267	2	100%	unknown(0)	-	-	HMMPfam_Cornichon
NPAS4	266743	genome.wustl.edu	37	11	66192681	66192681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178864.3	+1	validated	p.D774Y	0.999	62	0%	66	27.3%	0	-	benign(0.148)	deleterious(0.02)	neutral(0.396)	NULL
BBS1	582	genome.wustl.edu	37	11	66278513	66278513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024649.4	+1	reviewed	p.A26V	0.997	209	0%	230	30.4%	6	66.6%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66460096	66460096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006946.2	-1	reviewed	p.R1701C	1.000	46	0%	46	37%	14	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN2	6712	genome.wustl.edu	37	11	66460784	66460784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006946.2	-1	reviewed	p.E1576G	1.000	99	0%	77	24.7%	28	46.4%	possibly_damaging(0.81)	tolerated(0.2)	neutral(0.354)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN2	6712	genome.wustl.edu	37	11	66472357	66472357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006946.2	-1	reviewed	p.R797Q	0.898	24	0%	25	56%	17	35.2%	benign(0.002)	tolerated(0.72)	neutral(0.002)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
KDM2A	22992	genome.wustl.edu	37	11	67012821	67012821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012308.2	+1	reviewed	p.K575N	0.898	145	0%	143	25.9%	14	35.7%	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	HMMPfam_zf-CXXC
GSTP1	2950	genome.wustl.edu	37	11	67354016	67354016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398606	+1	known	p.N201D	0.242	31	0%	35	28.6%	1991	37.6%	benign(0.245)	deleterious(0.03)	neutral(0.390)	superfamily_GST_C_like
ENSG00000221553	0	genome.wustl.edu	37	11	67700701	67700701	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000408626	+1	novel	NULL	0.020	107	0%	138	9.4%	0	-	-	-	-	-
CHKA	1119	genome.wustl.edu	37	11	67838250	67838250	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001277.2	-1	reviewed	p.F235L	1.000	82	0%	72	34.7%	14	28.5%	benign(0.209)	tolerated(0.24)	neutral(0.058)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
SUV420H1	51111	genome.wustl.edu	37	11	67939058	67939058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017635.3	-1	reviewed	p.K258E	1.000	83	0%	83	30.1%	13	15.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
LRP5	4041	genome.wustl.edu	37	11	68213990	68213990	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002335.2	+1	reviewed	p.A1525	0.066	36	0%	33	30.3%	70	31.4%	-	-	-	NULL
PPP6R3	55291	genome.wustl.edu	37	11	68369342	68369342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018312.4	+1	validated	p.S655Y	0.896	404	0%	338	32.2%	21	66.6%	possibly_damaging(0.455)	deleterious(0.03)	deleterious(0.513)	NULL
IGHMBP2	3508	genome.wustl.edu	37	11	68696697	68696697	+	Silent	SNP	C	C	T	rs137852670		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002180.2	+1	reviewed	p.F369	0.985	46	0%	48	27.1%	7	28.5%	-	-	-	HMMSmart_SM00382,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPFIA1	8500	genome.wustl.edu	37	11	70178072	70178072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003626.2	+1	reviewed	p.D362Y	1.000	187	0%	161	26.7%	9	44.4%	possibly_damaging(0.826)	deleterious(0)	deleterious(0.758)	NULL
PPFIA1	8500	genome.wustl.edu	37	11	70181778	70181778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003626.2	+1	reviewed	p.R469I	1.000	87	0%	80	30%	7	28.5%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
CTTN	2017	genome.wustl.edu	37	11	70279211	70279211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005231.3	+1	reviewed	p.A424V	0.835	43	0%	27	29.6%	145	41.3%	possibly_damaging(0.72)	tolerated(0.14)	deleterious(0.510)	NULL
SHANK2	22941	genome.wustl.edu	37	11	70331426	70331426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012309.3	-1	reviewed	p.A1063T	1.000	29	0%	17	58.8%	0	-	benign(0.078)	deleterious(0.04)	neutral(0.354)	NULL
DHCR7	1717	genome.wustl.edu	37	11	71148915	71148915	+	Silent	SNP	G	G	A	rs80338858	byCluster	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001360.2	-1	reviewed	p.F302	0.979	56	0%	45	28.9%	62	37%	-	-	-	HMMPfam_ERG4_ERG24
DHCR7	1717	genome.wustl.edu	37	11	71149991	71149991	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001360.2	-1	reviewed	p.F255	0.967	19	0%	36	47.2%	64	7.8%	-	-	-	HMMPfam_ERG4_ERG24
DHCR7	1717	genome.wustl.edu	37	11	71150111	71150111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001360.2	-1	reviewed	p.F215L	1.000	30	0%	33	36.4%	40	40%	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1
DHCR7	1717	genome.wustl.edu	37	11	71155984	71155984	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001360.2	-1	reviewed	p.S5	0.017	179	0%	149	31.5%	58	43.1%	-	-	-	NULL
NADSYN1	55191	genome.wustl.edu	37	11	71192440	71192440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018161.4	+1	validated	p.R346Q	0.997	103	0%	69	34.8%	56	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_synthase,superfamily_Adenine nucleotide alpha hydrolases-like
NADSYN1	55191	genome.wustl.edu	37	11	71196592	71196592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018161.4	+1	validated	p.R487Q	0.984	11	0%	16	62.5%	104	50.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_synthase,superfamily_Adenine nucleotide alpha hydrolases-like
KRTAP5-9	3846	genome.wustl.edu	37	11	71259861	71259861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005553.3	+1	validated	p.S53Y	0.985	275	0%	239	26.8%	0	-	unknown(0)	tolerated(0.06)	-	PatternScan_TNFR_NGFR_1
LOC100129216	100129216	genome.wustl.edu	37	11	71595481	71595481	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001723261.1	+1	model	p.C29	0.005	97	0%	88	22.7%	0	-	-	-	-	NULL
NUMA1	4926	genome.wustl.edu	37	11	71727555	71727555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006185.2	-1	validated	p.E381K	1.000	77	0%	92	37%	14	42.8%	probably_damaging(0.962)	tolerated(0.24)	neutral(0.443)	NULL
FOLR2	2350	genome.wustl.edu	37	11	71929626	71929626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000321324	+1	known	p.D17Y	0.000	38	0%	32	31.2%	4	25%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
INPPL1	3636	genome.wustl.edu	37	11	71942192	71942192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001567.3	+1	reviewed	p.R486C	0.997	167	0%	126	35.7%	31	41.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
LOC220077	220077	genome.wustl.edu	37	11	71962306	71962306	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_017002.2	-1	model	NULL	0.063	11	0%	13	30.8%	0	-	-	-	-	-
PDE2A	5138	genome.wustl.edu	37	11	72296617	72296617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002599.3	-1	validated	p.K401N	1.000	39	0%	44	38.6%	0	-	probably_damaging(0.959)	tolerated(0.34)	neutral(0.426)	superfamily_GAF domain-like
PDE2A	5138	genome.wustl.edu	37	11	72300217	72300217	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002599.3	-1	validated	e12+2	1.000	20	0%	27	37%	0	-	-	-	-	-
ARAP1	116985	genome.wustl.edu	37	11	72404423	72404423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040118.2	-1	reviewed	p.D1301N	1.000	81	0%	92	28.3%	40	25%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
STARD10	10809	genome.wustl.edu	37	11	72466767	72466767	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006645.2	-1	validated	p.S203	0.975	48	0%	35	48.6%	78	38.4%	-	-	-	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
ARHGEF17	9828	genome.wustl.edu	37	11	73020899	73020899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014786.3	+1	validated	p.S406P	0.522	49	0%	25	20%	0	-	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
DNAJB13	374407	genome.wustl.edu	37	11	73662141	73662141	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153614.2	+1	provisional	p.L9	0.903	65	0%	71	36.6%	7	57.1%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
DNAJB13	374407	genome.wustl.edu	37	11	73677273	73677273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153614.2	+1	provisional	p.T195A	1.000	59	0%	53	22.6%	15	20%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
C2CD3	26005	genome.wustl.edu	37	11	73879425	73879425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015531.4	-1	validated	p.R97C	1.000	167	0%	139	30.9%	3	0%	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	NULL
PGM2L1	283209	genome.wustl.edu	37	11	74053588	74053588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173582.3	-1	validated	p.P517Q	1.000	226	0%	185	26.5%	15	80%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	superfamily_Phosphoglucomutase C-terminal domain
OR2AT4	341152	genome.wustl.edu	37	11	74800569	74800569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005285.1	-1	provisional	p.M64V	1.000	135	0%	146	28.8%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLCO2B1	11309	genome.wustl.edu	37	11	74904391	74904391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007256.3	+1	validated	p.F402L	1.000	150	0%	142	31%	12	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_OATP,superfamily_MFS general substrate transporter
SERPINH1	871	genome.wustl.edu	37	11	75277770	75277770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001235.2	+1	reviewed	p.V126M	0.998	14	0%	17	35.3%	288	26%	probably_damaging(0.96)	deleterious(0.03)	deleterious(0.768)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
UVRAG	7405	genome.wustl.edu	37	11	75590977	75590977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003369.3	+1	reviewed	p.S109P	1.000	526	0%	435	32%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_C2
UVRAG	7405	genome.wustl.edu	37	11	75599883	75599883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003369.3	+1	reviewed	p.R148Q	1.000	53	0%	45	22.2%	6	33.3%	benign(0.196)	tolerated(0.68)	neutral(0.020)	NULL
UVRAG	7405	genome.wustl.edu	37	11	75718615	75718615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003369.3	+1	reviewed	p.R317C	1.000	228	0%	176	31.2%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKRIR	5612	genome.wustl.edu	37	11	76063133	76063133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004705.2	-1	provisional	p.A354V	0.997	281	0%	270	33%	17	17.6%	possibly_damaging(0.619)	tolerated(0.35)	neutral(0.236)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76158035	76158035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020193.3	+1	validated	p.R18I	1.000	98	0%	111	32.4%	1	100%	possibly_damaging(0.527)	tolerated(0.06)	deleterious(0.500)	HMMPfam_ENT
MYO7A	4647	genome.wustl.edu	37	11	76905482	76905482	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000260.3	+1	reviewed	p.L1412	0.025	31	0%	19	42.1%	0	-	-	-	-	superfamily_Second domain of FERM,HMMSmart_SM00295
GDPD4	220032	genome.wustl.edu	37	11	76982396	76982396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182833.1	-1	provisional	p.F84V	0.000	216	0%	214	32.2%	0	-	benign(0.427)	tolerated(1)	neutral(0.139)	NULL
CLNS1A	1207	genome.wustl.edu	37	11	77330694	77330694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001293.2	-1	reviewed	p.E231D	0.993	130	0.8%	127	25.2%	138	37.6%	benign(0.023)	tolerated(0.41)	neutral(0.016)	NULL
RSF1	51773	genome.wustl.edu	37	11	77402275	77402275	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016578.3	-1	validated	p.L943	0.450	190	0%	157	28%	2	50%	-	-	-	superfamily_FYVE/PHD zinc finger
INTS4	92105	genome.wustl.edu	37	11	77633494	77633494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033547.3	-1	validated	p.R513Q	1.000	83	0%	85	23.5%	4	50%	probably_damaging(0.995)	tolerated(0.39)	deleterious(0.474)	superfamily_ARM repeat
KCTD14	65987	genome.wustl.edu	37	11	77727773	77727773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023930.3	-1	validated	p.D212N	0.999	165	0%	189	31.2%	60	60%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LOC100289388	100289388	genome.wustl.edu	37	11	77885091	77885091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343083.1	+1	model	p.I121V	0.960	225	0%	231	29.9%	0	-	-	-	-	NULL
USP35	57558	genome.wustl.edu	37	11	77921047	77921047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020798.2	+1	provisional	p.E716K	0.090	159	0%	175	31.4%	5	0%	unknown(0)	tolerated(0.15)	-	HMMPfam_UCH,superfamily_Cysteine proteinases
ODZ4	26011	genome.wustl.edu	37	11	78372537	78372537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098816.2	-1	validated	p.L2503P	0.998	34	0%	36	22.2%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78413166	78413166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098816.2	-1	validated	p.T1498A	1.000	64	0%	58	32.8%	0	-	benign(0.138)	tolerated(0.51)	neutral(0.020)	superfamily_SSF101898,superfamily_TolB_C
ODZ4	26011	genome.wustl.edu	37	11	78437226	78437226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098816.2	-1	validated	p.L1150M	1.000	265	0%	250	26%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C11orf82	220042	genome.wustl.edu	37	11	82643161	82643161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145018.3	+1	validated	p.S261P	0.529	296	0%	206	26.7%	5	80%	probably_damaging(0.959)	tolerated(0.2)	neutral(0.452)	NULL
RAB30	27314	genome.wustl.edu	37	11	82693236	82693236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014488.3	-1	provisional	p.S195G	1.000	170	0%	174	36.8%	4	50%	benign(0.002)	tolerated(0.2)	neutral(0.049)	NULL
PCF11	51585	genome.wustl.edu	37	11	82875329	82875329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015885.3	+1	validated	p.K196N	1.000	66	0%	60	36.7%	2	0%	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	NULL
PCF11	51585	genome.wustl.edu	37	11	82877046	82877046	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015885.3	+1	validated	p.K369N	1.000	86	0%	73	37%	3	33.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PCF11	51585	genome.wustl.edu	37	11	82892086	82892086	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015885.3	+1	validated	p.G1340	0.997	22	0%	23	52.2%	8	37.5%	-	-	-	NULL
ANKRD42	338699	genome.wustl.edu	37	11	82936079	82936079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182603.2	+1	validated	p.D229Y	0.000	309	0%	279	33.7%	1	0%	benign(0.282)	deleterious(0.03)	neutral(0.451)	superfamily_Ankyrin repeat
DLG2	1740	genome.wustl.edu	37	11	83170881	83170881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142699.1	-1	reviewed	p.P970S	1.000	127	0%	81	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gua_kin_assoc_C,superfamily_P-loop containing nucleoside triphosphate hydrolases
SYTL2	54843	genome.wustl.edu	37	11	85406250	85406250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206927.2	-1	reviewed	p.K1269N	1.000	228	0%	178	29.2%	11	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85435681	85435681	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206927.2	-1	reviewed	p.E607*	0.994	179	0%	200	13%	0	-	-	-	-	NULL
SYTL2	54843	genome.wustl.edu	37	11	85436343	85436343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206927.2	-1	reviewed	p.S386L	1.000	207	0%	169	30.8%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85437437	85437437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206927.2	-1	reviewed	p.F21L	1.000	175	0%	159	27.7%	0	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
EED	8726	genome.wustl.edu	37	11	85968611	85968611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003797.2	+1	reviewed	p.P203T	1.000	134	0%	71	28.2%	23	30.4%	benign(0.34)	deleterious(0.02)	deleterious(0.490)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CCDC81	60494	genome.wustl.edu	37	11	86119247	86119247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021827.4	+1	validated	p.E260K	0.965	135	0%	119	22.7%	0	-	benign(0.109)	tolerated(0.24)	neutral(0.046)	NULL
FZD4	8322	genome.wustl.edu	37	11	86662421	86662421	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012193.2	-1	reviewed	p.I459	1.000	224	0%	158	34.2%	8	50%	-	-	-	HMMPfam_Frizzled
RAB38	23682	genome.wustl.edu	37	11	87847222	87847222	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022337.1	-1	provisional	p.P190	0.641	225	0%	233	31.8%	4	50%	-	-	-	superfamily_SSF52540
CTSC	1075	genome.wustl.edu	37	11	88027550	88027550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001814.4	-1	reviewed	p.R339H	0.976	263	0%	246	28%	184	17.9%	possibly_damaging(0.819)	deleterious(0.04)	deleterious(0.658)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
GRM5	2915	genome.wustl.edu	37	11	88300439	88300439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143831.2	-1	reviewed	p.F804L	1.000	115	0%	108	25%	0	-	benign(0.312)	tolerated(0.16)	neutral(0.157)	HMMPfam_7tm_3
GRM5	2915	genome.wustl.edu	37	11	88300757	88300757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143831.2	-1	reviewed	p.F698L	1.000	182	0%	146	28.8%	0	-	benign(0.039)	tolerated(0.47)	neutral(0.013)	HMMPfam_7tm_3
GRM5	2915	genome.wustl.edu	37	11	88301134	88301134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143831.2	-1	reviewed	p.L573I	1.000	67	0%	60	20%	0	-	benign(0.228)	tolerated(0.23)	neutral(0.064)	NULL
TYR	7299	genome.wustl.edu	37	11	88911626	88911626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000372.4	+1	reviewed	p.D169N	0.964	329	0%	342	31.3%	0	-	benign(0.017)	tolerated(1)	neutral(0.001)	superfamily_Di-copper centre-containing domain
TYR	7299	genome.wustl.edu	37	11	88911710	88911710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000372.4	+1	reviewed	p.D197Y	0.992	295	1.4%	342	27.5%	0	-	benign(0.296)	deleterious(0.01)	deleterious(0.497)	HMMPfam_Tyrosinase,superfamily_Di-copper centre-containing domain
TYR	7299	genome.wustl.edu	37	11	89018028	89018028	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000372.4	+1	reviewed	p.S424	1.000	125	0%	152	31.6%	0	-	-	-	-	superfamily_Di-copper centre-containing domain
NOX4	50507	genome.wustl.edu	37	11	89059917	89059917	+	RNA	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_026571.1	-1	reviewed	NULL	0.000	137	0%	116	36.2%	12	0%	-	-	-	-
NOX4	50507	genome.wustl.edu	37	11	89135536	89135536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016931.3	-1	reviewed	p.K268N	1.000	150	0%	153	26.8%	5	0%	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
FOLH1B	219595	genome.wustl.edu	37	11	89409313	89409313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153696.2	+1	provisional	p.I142T	1.000	198	0%	146	26%	1	0%	-	-	-	HMMPfam_Peptidase_M28,superfamily_SSF53187
ENSG00000204455	0	genome.wustl.edu	37	11	89595687	89595687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000311917	+1	known	p.L340I	0.002	286	0%	215	14%	0	-	-	-	-	NULL
LOC653111	653111	genome.wustl.edu	37	11	89771028	89771028	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_926073.2	+1	model	p.E207*	0.001	537	0%	420	16.4%	0	-	-	-	-	NULL
ENSG00000204449	0	genome.wustl.edu	37	11	89806334	89806334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000432771	+1	known	p.L373I	0.004	214	0%	219	24.2%	0	-	possibly_damaging(0.859)	tolerated(0.07)	deleterious(0.651)	HMMPfam_SPRY
ENSG00000204449	0	genome.wustl.edu	37	11	89806542	89806542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000432771	+1	known	p.Y442C	0.000	81	0%	77	23.4%	0	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
UBTFL1	642623	genome.wustl.edu	37	11	89819391	89819391	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143975.1	+1	provisional	p.K92Q	0.011	165	0%	177	28.8%	0	-	-	-	-	superfamily_HMG-box
FAT3	120114	genome.wustl.edu	37	11	92534885	92534885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008781.2	+1	validated	p.F2902L	1.000	111	0%	87	34.5%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92568049	92568049	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008781.2	+1	validated	p.V3295	0.043	44	0%	31	32.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92569796	92569796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008781.2	+1	validated	p.D3384V	1.000	145	0%	132	31.8%	0	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92599960	92599960	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008781.2	+1	validated	p.I3904	0.423	29	0%	23	21.7%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
FAT3	120114	genome.wustl.edu	37	11	92616096	92616096	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008781.2	+1	validated	p.I4158	1.000	38	0%	25	28%	0	-	-	-	-	NULL
SLC36A4	120103	genome.wustl.edu	37	11	92901188	92901188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152313.2	-1	provisional	p.K230N	1.000	189	0.5%	152	38.2%	3	0%	possibly_damaging(0.734)	deleterious(0.01)	deleterious(0.674)	HMMPfam_Aa_trans
CCDC67	159989	genome.wustl.edu	37	11	93122238	93122238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181645.3	+1	validated	p.E330*	0.998	64	0%	54	20.4%	0	-	-	-	-	NULL
C11orf54	28970	genome.wustl.edu	37	11	93494810	93494810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014039.2	+1	provisional	p.R252C	1.000	130	0%	146	26.7%	9	77.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1907
MED17	9440	genome.wustl.edu	37	11	93545144	93545144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004268.4	+1	reviewed	p.E624K	1.000	289	0%	176	26.7%	42	47.6%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_DUF2364
HEPHL1	341208	genome.wustl.edu	37	11	93815725	93815725	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098672.1	+1	validated	p.R620*	0.990	88	0%	68	27.9%	0	-	-	-	-	superfamily_Cupredoxin
PANX1	24145	genome.wustl.edu	37	11	93912852	93912852	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015368.3	+1	reviewed	p.I210	0.281	123	0%	114	24.6%	6	50%	-	-	-	NULL
MRE11A	4361	genome.wustl.edu	37	11	94163104	94163104	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005591.3	-1	reviewed	p.S681	0.045	245	0%	164	24.4%	12	16.6%	-	-	-	NULL
AMOTL1	154810	genome.wustl.edu	37	11	94599145	94599145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130847.2	+1	reviewed	p.A767D	1.000	50	0%	48	31.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM4DL	390245	genome.wustl.edu	37	11	94758911	94758911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000450979	+1	known	p.E64K	0.015	29	0%	34	26.5%	0	-	benign(0.054)	tolerated(0.82)	neutral(0.004)	NULL
SESN3	143686	genome.wustl.edu	37	11	94917635	94917635	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144665.2	-1	provisional	p.E296*	1.000	244	0%	216	31.5%	3	0%	-	-	-	HMMPfam_PA26
SESN3	143686	genome.wustl.edu	37	11	94917748	94917748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144665.2	-1	provisional	p.S258Y	0.963	277	0%	204	29.9%	5	0%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_PA26
CEP57	9702	genome.wustl.edu	37	11	95546669	95546669	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014679.3	+1	validated	p.C140	1.000	112	0%	117	40.2%	5	20%	-	-	-	NULL
CEP57	9702	genome.wustl.edu	37	11	95546701	95546701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014679.3	+1	validated	p.R151Q	0.993	110	0%	111	26.1%	14	57.1%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_DUF1167
CEP57	9702	genome.wustl.edu	37	11	95555714	95555714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014679.3	+1	validated	p.G287S	1.000	98	0%	92	31.5%	26	42.3%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_DUF1167
CEP57	9702	genome.wustl.edu	37	11	95564210	95564210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014679.3	+1	validated	p.E431D	0.992	194	0%	120	10.8%	22	4.5%	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
MTMR2	8898	genome.wustl.edu	37	11	95568386	95568386	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_023356.2	-1	reviewed	NULL	0.000	59	0%	50	34%	16	56.2%	-	-	-	-
MTMR2	8898	genome.wustl.edu	37	11	95578235	95578235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016156.5	-1	reviewed	p.R423H	1.000	196	0%	130	16.2%	27	14.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799
CCDC82	79780	genome.wustl.edu	37	11	96116438	96116438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024725.3	-1	validated	p.S329Y	1.000	95	0%	85	24.7%	7	71.4%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
CNTN5	53942	genome.wustl.edu	37	11	99715827	99715827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014361.2	+1	reviewed	p.R137Q	1.000	130	0%	121	33.1%	0	-	probably_damaging(0.987)	tolerated(0.18)	deleterious(0.492)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CNTN5	53942	genome.wustl.edu	37	11	99715881	99715881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014361.2	+1	reviewed	p.G155D	1.000	155	0%	120	20.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CNTN5	53942	genome.wustl.edu	37	11	99786795	99786795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014361.2	+1	reviewed	p.N196I	1.000	92	0%	73	30.1%	0	-	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	HMMPfam_V-set,superfamily_Immunoglobulin
CNTN5	53942	genome.wustl.edu	37	11	100095460	100095460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014361.2	+1	reviewed	p.L641I	1.000	157	0%	140	30.7%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PGR	5241	genome.wustl.edu	37	11	100996850	100996850	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000926.4	-1	reviewed	p.F559	0.990	71	0%	43	16.3%	0	-	-	-	-	HMMPfam_Prog_receptor
KIAA1377	57562	genome.wustl.edu	37	11	101833716	101833716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020802.2	+1	validated	p.K650N	0.000	196	0%	192	29.7%	0	-	probably_damaging(0.978)	tolerated(0.13)	deleterious(0.673)	NULL
C11orf70	85016	genome.wustl.edu	37	11	101946688	101946688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032930.1	+1	predicted	p.L136I	1.000	261	0%	241	32.4%	1	0%	possibly_damaging(0.748)	tolerated(0.09)	deleterious(0.571)	NULL
MMP20	9313	genome.wustl.edu	37	11	102480739	102480739	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004771.3	-1	reviewed	p.F182	0.957	34	0%	34	35.3%	0	-	-	-	-	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP27	64066	genome.wustl.edu	37	11	102564788	102564788	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022122.2	-1	reviewed	p.F348V	0.867	261	0%	191	29.8%	0	-	benign(0.009)	tolerated(0.35)	neutral(0.021)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
MMP8	4317	genome.wustl.edu	37	11	102589167	102589167	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002424.2	-1	reviewed	p.I254	0.999	48	0%	52	30.8%	0	-	-	-	-	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486
MMP10	4319	genome.wustl.edu	37	11	102643601	102643601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002425.2	-1	reviewed	p.F401L	1.000	428	0%	431	29%	19	36.8%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
MMP12	4321	genome.wustl.edu	37	11	102743826	102743826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000326227	-1	known	p.F40C	0.796	52	0%	49	26.5%	47	0%	-	-	-	HMMPfam_PG_binding_1,superfamily_PGBD-like
MMP13	4322	genome.wustl.edu	37	11	102824942	102824942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002427.3	-1	reviewed	p.N194D	1.000	97	0%	107	32.7%	1	0%	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486
DYNC2H1	79659	genome.wustl.edu	37	11	102993572	102993572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080463.1	+1	reviewed	p.I502L	1.000	53	0%	59	22%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_DHC_N1
DYNC2H1	79659	genome.wustl.edu	37	11	103006639	103006639	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080463.1	+1	reviewed	p.L846	1.000	125	0%	107	11.2%	0	-	-	-	-	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103014071	103014071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080463.1	+1	reviewed	p.E883D	1.000	183	0%	160	30%	0	-	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103055624	103055624	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080463.1	+1	reviewed	e41-1	1.000	151	0%	125	25.6%	0	-	-	-	-	-
DYNC2H1	79659	genome.wustl.edu	37	11	103092844	103092844	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080463.1	+1	reviewed	p.E3065*	1.000	227	0%	131	32.8%	0	-	-	-	-	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103157039	103157039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080463.1	+1	reviewed	p.R3656H	0.902	468	0%	376	32.2%	0	-	benign(0.03)	tolerated(0.13)	neutral(0.254)	HMMPfam_Dynein_heavy
DYNC2H1	79659	genome.wustl.edu	37	11	103175372	103175372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080463.1	+1	reviewed	p.E3776K	1.000	103	0%	79	26.6%	1	0%	benign(0.201)	tolerated(0.17)	neutral(0.078)	HMMPfam_Dynein_heavy
DYNC2H1	79659	genome.wustl.edu	37	11	103191850	103191850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080463.1	+1	reviewed	p.L3947I	1.000	46	0%	38	28.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
PDGFD	80310	genome.wustl.edu	37	11	103866948	103866948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025208.4	-1	reviewed	p.I119V	0.000	139	0%	103	35.9%	0	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DDI1	414301	genome.wustl.edu	37	11	103907763	103907763	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001711.2	+1	validated	p.I71	0.000	108	0%	108	25%	0	-	-	-	-	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
DDI1	414301	genome.wustl.edu	37	11	103908440	103908440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001711.2	+1	validated	p.R297I	0.636	136	0%	112	33.9%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_Pept_Aspartic,HMMPfam_Asp_protease
LOC643733	643733	genome.wustl.edu	37	11	104777773	104777773	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078449.1	-1	model	NULL	0.003	57	0%	49	18.4%	0	-	-	-	-	-
CASP4	837	genome.wustl.edu	37	11	104819264	104819264	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001225.3	-1	reviewed	p.T307	0.074	188	0%	167	32.3%	39	12.8%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP5	838	genome.wustl.edu	37	11	104866559	104866559	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136112.1	-1	reviewed	p.S419*	0.821	170	0%	135	25.9%	0	-	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP5	838	genome.wustl.edu	37	11	104879560	104879560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136112.1	-1	reviewed	p.T65M	0.000	203	0%	190	35.3%	1	0%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
CASP1	834	genome.wustl.edu	37	11	104901168	104901168	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033292.2	-1	reviewed	p.E172	0.991	188	0%	164	31.7%	17	0%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP1	834	genome.wustl.edu	37	11	104905180	104905180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033292.2	-1	reviewed	p.R10I	0.138	784	0%	633	30.6%	14	0%	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
CARD18	59082	genome.wustl.edu	37	11	105009777	105009777	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021571.3	-1	validated	p.F10C	0.005	344	0%	322	26.4%	0	-	benign(0.006)	tolerated(0.1)	neutral(0.286)	NULL
GRIA4	2893	genome.wustl.edu	37	11	105483047	105483047	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000829.3	+1	reviewed	p.R45*	1.000	189	0%	156	25.6%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
MSANTD4	84437	genome.wustl.edu	37	11	105880322	105880322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032424.1	-1	validated	p.K326N	1.000	554	0%	375	24.3%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AASDHPPT	60496	genome.wustl.edu	37	11	105950307	105950307	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015423.2	+1	reviewed	p.S99	0.369	109	0%	76	25%	21	52.3%	-	-	-	superfamily_4-PPT_transf
GUCY1A2	2977	genome.wustl.edu	37	11	106849425	106849425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000855.1	-1	validated	p.R136K	1.000	170	0%	108	41.7%	0	-	benign(0.004)	tolerated(0.87)	neutral(0.001)	HMMPfam_HNOB
ALKBH8	91801	genome.wustl.edu	37	11	107403074	107403074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138775.2	-1	validated	p.R277Q	1.000	142	0%	91	25.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2OG-FeII_Oxy
SLC35F2	54733	genome.wustl.edu	37	11	107686657	107686657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017515.4	-1	validated	p.L49V	0.992	165	0%	180	29.4%	13	53.8%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_DUF914
NPAT	4863	genome.wustl.edu	37	11	108044135	108044135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002519.2	-1	validated	p.L526I	0.017	200	0%	187	24.1%	4	25%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
NPAT	4863	genome.wustl.edu	37	11	108044250	108044250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002519.2	-1	validated	p.K487N	0.811	319	0%	247	34.4%	2	100%	possibly_damaging(0.853)	deleterious(0.04)	deleterious(0.677)	NULL
NPAT	4863	genome.wustl.edu	37	11	108056139	108056139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002519.2	-1	validated	p.F270C	1.000	57	0%	31	38.7%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ATM	472	genome.wustl.edu	37	11	108115595	108115595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000051.3	+1	reviewed	p.R248Q	1.000	141	0%	146	28.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATM	472	genome.wustl.edu	37	11	108119694	108119694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000051.3	+1	reviewed	p.S367F	1.000	108	0%	96	35.4%	0	-	possibly_damaging(0.527)	deleterious(0)	deleterious(0.623)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108153592	108153592	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000051.3	+1	reviewed	p.I1244	0.662	120	0%	103	26.2%	0	-	-	-	-	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108155074	108155074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000051.3	+1	reviewed	p.K1289N	1.000	173	0%	137	29.2%	0	-	benign(0.253)	deleterious(0.01)	neutral(0.432)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108205756	108205756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000051.3	+1	reviewed	p.R2691C	1.000	134	0%	123	30.1%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108214018	108214018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000051.3	+1	reviewed	p.L2780I	1.000	189	0%	203	16.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
EXPH5	23086	genome.wustl.edu	37	11	108381052	108381052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015065.2	-1	validated	p.E1728K	0.025	219	0%	208	36.1%	2	100%	benign(0.023)	deleterious(0.01)	neutral(0.407)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108381248	108381248	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015065.2	-1	validated	p.N1662	0.005	286	0%	259	31.7%	2	0%	-	-	-	NULL
EXPH5	23086	genome.wustl.edu	37	11	108381619	108381619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015065.2	-1	validated	p.E1539K	0.000	106	0%	134	19.4%	2	100%	benign(0.023)	deleterious(0.01)	neutral(0.407)	NULL
ZC3H12C	85463	genome.wustl.edu	37	11	110035666	110035666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033390.1	+1	validated	p.I619T	0.950	143	0.7%	171	39.2%	0	-	benign(0.022)	deleterious(0)	neutral(0.446)	NULL
RDX	5962	genome.wustl.edu	37	11	110128562	110128562	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002906.3	-1	reviewed	p.N210H	1.000	195	0%	166	34.9%	17	58.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_C,superfamily_PH domain-like
ARHGAP20	57569	genome.wustl.edu	37	11	110450110	110450110	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020809.2	-1	validated	p.L1187fs	0.002	-	-	-	-	-	-	-	-	-	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110451546	110451546	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020809.2	-1	validated	p.I708	0.000	128	0%	121	65.3%	0	-	-	-	-	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110461423	110461423	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020809.2	-1	validated	p.V418	0.000	124	0%	89	28.1%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP20	57569	genome.wustl.edu	37	11	110485315	110485315	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020809.2	-1	validated	p.I200	1.000	141	0%	111	9.9%	0	-	-	-	-	HMMPfam_RA
LOC120364	120364	genome.wustl.edu	37	11	110658759	110658759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_062025.5	-1	model	p.R314I	0.026	61	0%	68	32.4%	0	-	-	-	-	NULL
LOC120364	120364	genome.wustl.edu	37	11	110659333	110659333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_062025.5	-1	model	p.D123Y	1.000	138	0%	134	29.1%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
BTG4	54766	genome.wustl.edu	37	11	111369495	111369495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017589.2	-1	reviewed	p.D3Y	1.000	86	0%	66	28.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_BTG,HMMSmart_btg1
C11orf88	399949	genome.wustl.edu	37	11	111385527	111385527	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207430.2	+1	validated	p.S6	0.000	34	0%	25	44%	0	-	-	-	-	NULL
SDHD	6392	genome.wustl.edu	37	11	111958593	111958593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000375549	+1	known	p.R22Q	0.039	434	0%	427	34%	146	34.9%	possibly_damaging(0.657)	tolerated(0.19)	neutral(0.281)	HMMPfam_CybS
NCAM1	4684	genome.wustl.edu	37	11	113076886	113076886	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000401611	+1	known	p.I86	1.000	536	0%	406	29.8%	1	100%	-	-	-	superfamily_SSF48726
NCAM1	4684	genome.wustl.edu	37	11	113126684	113126684	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000401611	+1	known	p.G545	0.460	18	0%	20	30%	6	66.6%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TTC12	54970	genome.wustl.edu	37	11	113196360	113196360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017868.3	+1	validated	p.R146Q	1.000	257	0%	255	46.3%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,superfamily_ARM-type_fold,HMMSmart_TPR,superfamily_SSF48452
ANKK1	255239	genome.wustl.edu	37	11	113270738	113270738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178510.1	+1	reviewed	p.A683T	0.409	72	0%	55	12.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ZBTB16	7704	genome.wustl.edu	37	11	113934930	113934930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001018011.1	+1	reviewed	p.A303V	0.300	32	0%	33	21.2%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
FAM55A	120400	genome.wustl.edu	37	11	114393771	114393771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152315.2	-1	validated	p.P171L	0.000	229	0%	178	29.8%	0	-	benign(0.007)	tolerated(0.23)	neutral(0.042)	NULL
FAM55B	120406	genome.wustl.edu	37	11	114568889	114568889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182495.5	+1	validated	p.K85N	0.000	142	0%	160	30%	0	-	benign(0.025)	tolerated(0.1)	neutral(0.287)	NULL
FAM55B	120406	genome.wustl.edu	37	11	114569388	114569388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182495.5	+1	validated	p.A252S	1.000	174	0%	165	23%	0	-	possibly_damaging(0.917)	tolerated(0.37)	neutral(0.387)	NULL
SIK3	23387	genome.wustl.edu	37	11	116718322	116718322	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000445177	-1	known	p.T1268A	0.986	199	0%	256	23.8%	9	66.6%	-	-	-	NULL
PCSK7	9159	genome.wustl.edu	37	11	117089223	117089223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004716.2	-1	reviewed	p.A498V	0.818	129	0%	92	39.1%	21	42.8%	benign(0)	tolerated(0.34)	neutral(0.023)	superfamily_Gal_bind_like
RNF214	257160	genome.wustl.edu	37	11	117150675	117150675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077239.1	+1	validated	p.I337M	1.000	149	0%	226	31%	10	40%	benign(0.386)	tolerated(0.09)	neutral(0.420)	NULL
RNF214	257160	genome.wustl.edu	37	11	117152058	117152058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077239.1	+1	validated	p.R392C	1.000	230	0%	215	33%	23	26%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RNF214	257160	genome.wustl.edu	37	11	117153160	117153160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077239.1	+1	validated	p.R585C	1.000	197	0%	171	12.9%	10	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CEP164	22897	genome.wustl.edu	37	11	117261929	117261929	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014956.4	+1	validated	p.E761*	0.994	38	0%	43	18.6%	0	-	-	-	-	NULL
CEP164	22897	genome.wustl.edu	37	11	117265847	117265847	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014956.4	+1	validated	p.T951	0.000	127	0%	116	26.7%	2	100%	-	-	-	NULL
CEP164	22897	genome.wustl.edu	37	11	117278669	117278669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014956.4	+1	validated	p.S1177L	0.969	19	0%	28	28.6%	3	0%	benign(0.423)	tolerated(0.21)	neutral(0.181)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117306399	117306399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020693.2	-1	provisional	p.R1673C	0.997	104	0%	119	26.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117314720	117314720	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020693.2	-1	provisional	p.L1308	0.910	60	0%	75	40%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DSCAML1	57453	genome.wustl.edu	37	11	117332197	117332197	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020693.2	-1	provisional	p.R1187	1.000	103	0%	64	18.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DSCAML1	57453	genome.wustl.edu	37	11	117651280	117651280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020693.2	-1	provisional	p.D158N	1.000	72	0%	68	22.1%	0	-	probably_damaging(1)	tolerated(0.79)	deleterious(0.501)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
FXYD6	53826	genome.wustl.edu	37	11	117712720	117712720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022003.2	-1	reviewed	p.D28N	0.997	268	0%	196	29.1%	4	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_ATP1G1_PLM_MAT8,PatternScan_FXYD
TMPRSS4	56649	genome.wustl.edu	37	11	117978571	117978571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019894.3	+1	reviewed	p.R175C	0.972	56	0%	52	36.5%	95	57.8%	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	HMMSmart_SM00202,superfamily_SRCR-like
UBE4A	9354	genome.wustl.edu	37	11	118250261	118250261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004788.2	+1	reviewed	p.R565C	1.000	212	0%	222	27.9%	7	42.8%	probably_damaging(0.986)	tolerated(0.18)	deleterious(0.490)	HMMPfam_Ufd2P_core
UBE4A	9354	genome.wustl.edu	37	11	118253482	118253482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004788.2	+1	reviewed	p.E737K	1.000	268	0%	293	26.6%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ufd2P_core
UBE4A	9354	genome.wustl.edu	37	11	118263606	118263606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004788.2	+1	reviewed	p.L1031F	1.000	237	0%	165	33.3%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box
MLL	4297	genome.wustl.edu	37	11	118347672	118347672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005933.2	+1	validated	p.K1103N	1.000	172	0%	161	23.6%	0	-	possibly_damaging(0.922)	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118348798	118348798	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005933.2	+1	validated	p.R1151*	1.000	355	0%	397	12.8%	0	-	-	-	-	HMMPfam_zf-CXXC
MLL	4297	genome.wustl.edu	37	11	118362576	118362576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005933.2	+1	validated	p.S1643Y	1.000	139	0%	94	31.9%	0	-	probably_damaging(0.995)	-	-	HMMSmart_SM00297
MLL	4297	genome.wustl.edu	37	11	118373353	118373353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005933.2	+1	validated	p.V2246G	0.051	204	0%	188	30.9%	0	-	benign(0.004)	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118373443	118373443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005933.2	+1	validated	p.K2276T	0.587	196	0%	180	28.3%	4	25%	probably_damaging(0.98)	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118380737	118380737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005933.2	+1	validated	p.R3656W	1.000	215	0%	231	41.6%	7	28.5%	probably_damaging(1)	-	-	NULL
ARCN1	372	genome.wustl.edu	37	11	118454682	118454682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001655.4	+1	reviewed	p.E202D	0.997	143	0%	144	25.7%	33	33.3%	benign(0)	tolerated(0.9)	-	NULL
CXCR5	643	genome.wustl.edu	37	11	118764888	118764888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032966.1	+1	reviewed	p.T167M	0.410	55	0%	64	35.9%	1	0%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_7tm_1,superfamily_SSF81321
RPS25	6230	genome.wustl.edu	37	11	118886635	118886635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001028.2	-1	reviewed	p.V100L	1.000	187	0%	170	28.2%	543	37.7%	unknown(0)	-	-	HMMPfam_Ribosomal_S25
HINFP	25988	genome.wustl.edu	37	11	119003445	119003445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015517.3	+1	validated	p.R277C	1.000	210	0%	218	12.8%	14	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PDZD3	79849	genome.wustl.edu	37	11	119057128	119057128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000392817	+1	known	p.E86G	0.000	62	0%	44	31.8%	0	-	unknown(0)	-	-	superfamily_PDZ domain-like
PDZD3	79849	genome.wustl.edu	37	11	119058935	119058935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000454065	+1	known	p.R381Q	0.000	17	0%	13	30.8%	0	-	-	-	-	NULL
MFRP	83552	genome.wustl.edu	37	11	119215037	119215037	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031433.2	-1	reviewed	p.Y321	1.000	17	0%	23	26.1%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
USP2	9099	genome.wustl.edu	37	11	119243603	119243603	+	Silent	SNP	G	G	A	rs35832174		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004205.4	-1	validated	p.V196	0.022	59	0%	59	37.3%	1	0%	-	-	-	NULL
LOC100130353	100130353	genome.wustl.edu	37	11	119274548	119274548	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078444.1	+1	model	NULL	1.000	75	0%	68	25%	0	-	-	-	-	-
ARHGEF12	23365	genome.wustl.edu	37	11	120331410	120331410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015313.1	+1	reviewed	p.R853*	1.000	282	0%	220	30.5%	1	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF12	23365	genome.wustl.edu	37	11	120351114	120351114	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015313.1	+1	reviewed	p.E1404	1.000	209	0%	225	28.9%	6	0%	-	-	-	NULL
TECTA	7007	genome.wustl.edu	37	11	120973381	120973381	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005422.2	+1	reviewed	p.Y3D	1.000	176	0%	178	29.2%	0	-	benign(0.072)	tolerated(0.17)	neutral(0.064)	NULL
TECTA	7007	genome.wustl.edu	37	11	120996030	120996030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005422.2	+1	reviewed	p.S408Y	1.000	165	0%	213	34.7%	0	-	possibly_damaging(0.836)	tolerated(0.35)	neutral(0.340)	HMMPfam_VWD,HMMSmart_SM00216
SORL1	6653	genome.wustl.edu	37	11	121429313	121429313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003105.4	+1	reviewed	p.T893A	1.000	282	0%	227	34.8%	10	30%	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
SORL1	6653	genome.wustl.edu	37	11	121437666	121437666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003105.4	+1	reviewed	p.P1023S	0.094	68	0%	45	35.6%	8	87.5%	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
SORL1	6653	genome.wustl.edu	37	11	121490578	121490578	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003105.4	+1	reviewed	p.S1947	0.008	156	0%	212	25%	12	33.3%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
BLID	414899	genome.wustl.edu	37	11	121986473	121986473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001786.2	-1	reviewed	p.S53F	0.090	230	0.4%	213	26.3%	0	-	unknown(0)	-	-	NULL
UBASH3B	84959	genome.wustl.edu	37	11	122669682	122669682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032873.4	+1	validated	p.D464N	0.974	99	0%	102	28.4%	4	0%	benign(0.023)	tolerated(0.08)	neutral(0.301)	HMMPfam_PGAM,superfamily_SSF53254
C11orf63	79864	genome.wustl.edu	37	11	122756816	122756816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024806.2	+1	validated	p.E87K	0.725	88	0%	87	21.8%	1	0%	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122774655	122774655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024806.2	+1	validated	p.Y123H	1.000	283	0%	302	29.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122775049	122775049	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024806.2	+1	validated	p.H254P	1.000	220	0%	289	31.1%	1	0%	benign(0.082)	deleterious(0.02)	neutral(0.389)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122805287	122805287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024806.2	+1	validated	p.T380A	0.000	174	0%	138	16.7%	0	-	benign(0)	tolerated(1)	-	NULL
C11orf63	79864	genome.wustl.edu	37	11	122817312	122817312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024806.2	+1	validated	p.V581M	0.995	90	0%	106	27.4%	1	0%	possibly_damaging(0.631)	deleterious(0)	deleterious(0.665)	NULL
HSPA8	3312	genome.wustl.edu	37	11	122930229	122930229	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006597.3	-1	reviewed	p.E358*	1.000	102	0%	123	36.6%	894	0.1%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
GRAMD1B	57476	genome.wustl.edu	37	11	123396874	123396874	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020716.1	+1	validated	p.L6	0.930	34	0%	31	16.1%	0	-	-	-	-	NULL
ZNF202	7753	genome.wustl.edu	37	11	123597300	123597300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003455.2	-1	validated	p.A451V	0.003	195	0%	190	30.5%	1	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	superfamily_C2H2 and C2HC zinc fingers
OR6M1	390261	genome.wustl.edu	37	11	123676994	123676994	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005325.1	-1	provisional	p.R22*	0.001	301	0%	266	26.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
TMEM225	338661	genome.wustl.edu	37	11	123753968	123753968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013743.1	-1	provisional	p.E185D	0.002	109	0%	84	19%	0	-	possibly_damaging(0.868)	tolerated(0.1)	deleterious(0.623)	NULL
TMEM225	338661	genome.wustl.edu	37	11	123754010	123754010	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013743.1	-1	provisional	p.C171	0.000	111	0%	88	25%	0	-	-	-	-	NULL
OR4D5	219875	genome.wustl.edu	37	11	123810747	123810747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001965.1	+1	provisional	p.A142T	0.999	189	0%	165	28.5%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10S1	219873	genome.wustl.edu	37	11	123847767	123847767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004474.1	-1	provisional	p.L211R	0.627	76	0%	100	24%	0	-	probably_damaging(0.986)	tolerated(0.14)	deleterious(0.684)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
VWA5A	4013	genome.wustl.edu	37	11	123988964	123988964	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130142.1	+1	validated	p.S105	0.537	149	0%	130	35.4%	4	0%	-	-	-	HMMSmart_SM00609,HMMPfam_VIT
VWA5A	4013	genome.wustl.edu	37	11	123993767	123993767	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130142.1	+1	validated	p.D287	0.994	98	0%	61	14.8%	5	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWA5A	4013	genome.wustl.edu	37	11	123994992	123994992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130142.1	+1	validated	p.K405E	0.061	66	0%	65	36.9%	6	16.6%	benign(0)	tolerated(1)	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWA5A	4013	genome.wustl.edu	37	11	124013234	124013234	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130142.1	+1	validated	p.I703	0.964	244	0%	230	32.2%	7	0%	-	-	-	NULL
OR8G2	26492	genome.wustl.edu	37	11	124095783	124095783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007249.1	+1	provisional	p.A129V	0.002	297	0%	314	30.9%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR8G5	219865	genome.wustl.edu	37	11	124121008	124121008	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000341493	+1	known	p.K196Q	0.150	343	0%	344	32.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8D1	283159	genome.wustl.edu	37	11	124179999	124179999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002917.1	-1	provisional	p.L222I	0.000	109	0%	103	27.2%	0	-	benign(0.015)	tolerated(0.68)	neutral(0.003)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8D1	283159	genome.wustl.edu	37	11	124180394	124180394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002917.1	-1	provisional	p.N90T	0.001	200	0%	164	29.3%	0	-	possibly_damaging(0.759)	deleterious(0.02)	deleterious(0.664)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8D2	283160	genome.wustl.edu	37	11	124189441	124189441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002918.1	-1	provisional	p.Y218C	0.703	461	0%	381	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PANX3	116337	genome.wustl.edu	37	11	124487171	124487171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052959.2	+1	reviewed	p.A109V	1.000	40	0%	51	41.2%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
SIAE	54414	genome.wustl.edu	37	11	124507076	124507076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170601.3	-1	validated	p.R448Q	0.000	238	0%	242	26.9%	26	30.7%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
ROBO3	64221	genome.wustl.edu	37	11	124740192	124740192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022370.3	+1	reviewed	p.T300A	0.000	45	0%	67	38.8%	0	-	benign(0)	tolerated(0.79)	neutral(0.001)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ROBO3	64221	genome.wustl.edu	37	11	124742317	124742317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022370.3	+1	reviewed	p.R400H	1.000	70	0%	95	31.6%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ROBO4	54538	genome.wustl.edu	37	11	124754983	124754983	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019055.5	-1	validated	p.I985	0.006	123	0%	87	40.2%	10	0%	-	-	-	NULL
ROBO4	54538	genome.wustl.edu	37	11	124756692	124756692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019055.5	-1	validated	p.A821D	0.998	102	0%	78	37.2%	7	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CCDC15	80071	genome.wustl.edu	37	11	124857420	124857420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025004.2	+1	validated	p.V433A	0.071	596	0%	413	31%	0	-	benign(0.278)	tolerated(0.54)	neutral(0.037)	NULL
CCDC15	80071	genome.wustl.edu	37	11	124875086	124875086	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025004.2	+1	validated	p.E797*	1.000	44	0%	44	25%	1	0%	-	-	-	NULL
CCDC15	80071	genome.wustl.edu	37	11	124908453	124908453	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025004.2	+1	validated	p.E846	0.339	45	0%	54	42.6%	0	-	-	-	-	NULL
FEZ1	9638	genome.wustl.edu	37	11	125325668	125325668	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000392709	-1	known	p.C305	0.009	178	0%	169	32%	0	-	-	-	-	NULL
HYLS1	219844	genome.wustl.edu	37	11	125770101	125770101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134793.1	+1	reviewed	p.R280C	1.000	95	0%	83	28.9%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDX25	29118	genome.wustl.edu	37	11	125787139	125787139	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013264.3	+1	reviewed	p.F344C	1.000	25	0%	29	24.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DCPS	28960	genome.wustl.edu	37	11	126174162	126174162	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014026.3	+1	validated	p.F63V	0.983	43	0%	55	41.8%	23	30.4%	probably_damaging(0.989)	tolerated(1)	neutral(0.440)	HMMPfam_DcpS,superfamily_Scavenger_mRNA_decap_enz_N
KIRREL3	84623	genome.wustl.edu	37	11	126314950	126314950	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032531.3	-1	reviewed	p.D392	0.998	50	0%	37	18.9%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KIRREL3	84623	genome.wustl.edu	37	11	126333147	126333147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032531.3	-1	reviewed	p.P216H	0.999	51	0%	36	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
ETS1	2113	genome.wustl.edu	37	11	128354817	128354817	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143820.1	-1	validated	p.R255*	1.000	238	0%	235	26.4%	30	0%	-	-	-	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128842449	128842449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142685.1	-1	validated	p.R1304C	0.173	151	0%	126	25.4%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128842738	128842738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142685.1	-1	validated	p.F1207L	0.025	165	0%	136	25%	9	11.1%	possibly_damaging(0.643)	deleterious(0.01)	deleterious(0.631)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128932239	128932239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142685.1	-1	validated	p.V286A	1.000	243	0%	184	28.3%	0	-	possibly_damaging(0.717)	deleterious(0)	deleterious(0.704)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ARHGAP32	9743	genome.wustl.edu	37	11	128936724	128936724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142685.1	-1	validated	p.R177W	1.000	92	0%	74	23%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PX domain
ARHGAP32	9743	genome.wustl.edu	37	11	128994780	128994780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142685.1	-1	validated	p.A79T	1.000	156	0%	110	29.1%	0	-	benign(0.024)	tolerated(0.42)	neutral(0.015)	NULL
BARX2	8538	genome.wustl.edu	37	11	129306816	129306816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003658.4	+1	reviewed	p.E120K	1.000	55	0%	36	33.3%	0	-	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	NULL
BARX2	8538	genome.wustl.edu	37	11	129321249	129321249	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003658.4	+1	reviewed	p.P264	1.000	229	0.4%	203	34%	0	-	-	-	-	NULL
ADAMTS15	170689	genome.wustl.edu	37	11	130319326	130319326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139055.2	+1	reviewed	p.G153V	1.000	22	0%	24	33.3%	0	-	benign(0.054)	tolerated(0.21)	neutral(0.048)	HMMPfam_Pep_M12B_propep
SNX19	399979	genome.wustl.edu	37	11	130775920	130775920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014758.2	-1	validated	p.P791S	0.000	91	0%	79	32.9%	11	72.7%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
SNX19	399979	genome.wustl.edu	37	11	130784751	130784751	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014758.2	-1	validated	p.R362*	0.659	87	0%	93	29%	1	0%	-	-	-	NULL
NTM	50863	genome.wustl.edu	37	11	131781417	131781417	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144058.1	+1	reviewed	p.L14	0.996	43	0%	36	30.6%	6	0%	-	-	-	NULL
NTM	50863	genome.wustl.edu	37	11	132081940	132081940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144058.1	+1	reviewed	p.S142Y	1.000	317	0%	297	27.3%	6	0%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	HMMPfam_I-set,superfamily_SSF48726
IGSF9B	22997	genome.wustl.edu	37	11	133795708	133795708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014987.1	-1	validated	p.A654T	0.984	27	0%	17	29.4%	0	-	benign(0.01)	tolerated(0.16)	neutral(0.060)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
JAM3	83700	genome.wustl.edu	37	11	134010582	134010582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032801.3	+1	reviewed	p.S103L	1.000	183	0%	158	28.5%	1	0%	benign(0.291)	tolerated(0.06)	neutral(0.412)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
NCAPD3	23310	genome.wustl.edu	37	11	134038450	134038450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015261.2	-1	validated	p.R1096Q	1.000	166	0%	124	27.4%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCAPD3	23310	genome.wustl.edu	37	11	134076555	134076555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015261.2	-1	validated	p.A319T	0.001	144	0%	130	23.8%	5	0%	benign(0.015)	tolerated(0.49)	neutral(0.011)	superfamily_ARM-type_fold
GLB1L2	89944	genome.wustl.edu	37	11	134241666	134241666	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138342.3	+1	validated	p.I483	1.000	65	0%	44	31.8%	4	25%	-	-	-	NULL
ENSG00000238823	0	genome.wustl.edu	37	12	73287	73287	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000458783	-1	novel	NULL	0.002	467	0%	396	10.6%	0	-	-	-	-	-
KDM5A	5927	genome.wustl.edu	37	12	432867	432867	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042603.1	-1	reviewed	p.C683	0.999	171	0%	150	36%	5	40%	-	-	-	HMMPfam_zf-C5HC2
B4GALNT3	283358	genome.wustl.edu	37	12	667743	667743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173593.3	+1	validated	p.R893W	1.000	68	0%	41	31.7%	20	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotide-diphospho-sugar transferases
WNK1	65125	genome.wustl.edu	37	12	968486	968486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018979.3	+1	reviewed	p.E492D	1.000	174	0%	118	23.7%	2	0%	benign(0.39)	tolerated(0.06)	neutral(0.448)	superfamily_Kinase_like
WNK1	65125	genome.wustl.edu	37	12	994530	994530	+	Silent	SNP	A	A	G	rs186880440	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018979.3	+1	reviewed	p.E1520	0.997	581	0%	477	31%	18	44.4%	-	-	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1292569	1292569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178040.2	+1	reviewed	p.M713I	1.000	240	0%	192	21.9%	4	0%	benign(0.039)	tolerated(0.37)	neutral(0.021)	HMMPfam_Cast
ERC1	23085	genome.wustl.edu	37	12	1345945	1345945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178040.2	+1	reviewed	p.D788Y	1.000	101	0%	90	32.2%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cast
WNT5B	81029	genome.wustl.edu	37	12	1755106	1755106	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030775.2	+1	reviewed	p.R256	0.147	13	0%	21	47.6%	1	0%	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
ADIPOR2	79602	genome.wustl.edu	37	12	1863601	1863601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024551.2	+1	validated	p.R31Q	0.000	206	0%	174	26.4%	16	50%	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
ADIPOR2	79602	genome.wustl.edu	37	12	1887161	1887161	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024551.2	+1	validated	p.E145*	1.000	144	0%	142	38%	5	20%	-	-	-	HMMPfam_HlyIII
CACNA1C	775	genome.wustl.edu	37	12	2714265	2714265	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199460.2	+1	reviewed	p.V1013	0.015	100	0%	120	31.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2742822	2742822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199460.2	+1	reviewed	p.F1306I	1.000	254	0%	268	27.6%	3	0%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FKBP4	2288	genome.wustl.edu	37	12	2906325	2906325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002014.3	+1	reviewed	p.G43S	1.000	56	0%	50	26%	80	41.2%	benign(0.234)	tolerated(0.12)	neutral(0.284)	HMMPfam_FKBP_C,superfamily_SSF54534
FKBP4	2288	genome.wustl.edu	37	12	2907932	2907932	+	Missense_Mutation	SNP	C	C	T	rs142464168	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002014.3	+1	reviewed	p.R152C	1.000	94	1.1%	80	22.5%	123	41.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF54534
FOXM1	2305	genome.wustl.edu	37	12	2968746	2968746	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_202002.1	-1	validated	p.F488L	0.000	58	0%	75	30.7%	43	34.8%	benign(0)	tolerated(1)	-	NULL
TEAD4	7004	genome.wustl.edu	37	12	3131142	3131142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003213.2	+1	reviewed	p.E286K	1.000	166	0%	110	31.8%	33	48.4%	possibly_damaging(0.748)	tolerated(0.05)	deleterious(0.620)	HMMPfam_TEA
TSPAN9	10867	genome.wustl.edu	37	12	3310419	3310419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006675.4	+1	reviewed	p.F20L	1.000	147	0%	71	39.4%	18	5.5%	benign(0.294)	tolerated(0.29)	neutral(0.120)	HMMPfam_Tetraspannin
PARP11	57097	genome.wustl.edu	37	12	3938117	3938117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020367.4	-1	validated	p.S76Y	1.000	114	0%	115	27.8%	0	-	possibly_damaging(0.691)	deleterious(0.04)	deleterious(0.597)	HMMPfam_WWE
PARP11	57097	genome.wustl.edu	37	12	3939163	3939163	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020367.4	-1	validated	p.E14*	0.993	109	0%	109	11%	0	-	-	-	-	NULL
ENSG00000118976	0	genome.wustl.edu	37	12	3948688	3948688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000237841	+1	known	p.E74G	0.206	59	0%	32	28.1%	0	-	-	-	-	HMMPfam_OTU,superfamily_SSF54001
ENSG00000118976	0	genome.wustl.edu	37	12	3948700	3948700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000237841	+1	known	p.K78T	0.415	55	0%	35	37.1%	0	-	-	-	-	HMMPfam_OTU,superfamily_SSF54001
ENSG00000118976	0	genome.wustl.edu	37	12	3948790	3948790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000237841	+1	known	p.A108V	1.000	66	0%	54	31.5%	0	-	-	-	-	HMMPfam_OTU,superfamily_SSF54001
C12orf5	57103	genome.wustl.edu	37	12	4440457	4440457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020375.2	+1	reviewed	p.R15I	1.000	187	0%	162	25.9%	13	53.8%	benign(0.202)	deleterious(0.01)	neutral(0.425)	PatternScan_PG_MUTASE,HMMPfam_PGAM,superfamily_SSF53254
C12orf4	57102	genome.wustl.edu	37	12	4627253	4627253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020374.2	-1	predicted	p.R335Q	1.000	290	0%	200	59%	10	40%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_DUF2362
C12orf4	57102	genome.wustl.edu	37	12	4645341	4645341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020374.2	-1	predicted	p.R7I	1.000	99	0%	85	23.5%	0	-	possibly_damaging(0.604)	deleterious(0.03)	deleterious(0.574)	NULL
GALNT8	26290	genome.wustl.edu	37	12	4853738	4853738	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017417.1	+1	reviewed	p.P244	0.843	133	0%	90	27.8%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_SSF53448
KCNA6	3742	genome.wustl.edu	37	12	4919815	4919815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002235.3	+1	reviewed	p.G203D	0.768	103	0%	107	44.9%	0	-	benign(0.008)	tolerated(0.63)	neutral(0.004)	superfamily_SSF81324
KCNA1	3736	genome.wustl.edu	37	12	5021358	5021358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000217.2	+1	reviewed	p.E272K	1.000	130	0%	123	29.3%	0	-	possibly_damaging(0.853)	tolerated(0.42)	neutral(0.343)	HMMPfam_Ion_trans,superfamily_SSF81324
LOC390282	390282	genome.wustl.edu	37	12	5141768	5141768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_372447.5	-1	model	p.A110T	1.000	102	0%	104	36.5%	0	-	-	-	-	NULL
KCNA5	3741	genome.wustl.edu	37	12	5153773	5153773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002234.2	+1	reviewed	p.R154C	1.000	53	0%	53	39.6%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCNA5	3741	genome.wustl.edu	37	12	5154705	5154705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002234.2	+1	reviewed	p.F464L	1.000	77	0%	70	24.3%	0	-	benign(0.396)	deleterious(0.04)	deleterious(0.476)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NTF3	4908	genome.wustl.edu	37	12	5604072	5604072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102654.1	+1	reviewed	p.N244S	1.000	95	0%	86	30.2%	0	-	benign(0.032)	deleterious(0)	neutral(0.446)	HMMPfam_NGF,HMMSmart_NGF,superfamily_SSF57501
ANO2	57101	genome.wustl.edu	37	12	5672680	5672680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020373.2	-1	validated	p.T928A	1.000	245	0%	226	35%	0	-	benign(0.22)	tolerated(0.34)	neutral(0.044)	HMMPfam_DUF590
ANO2	57101	genome.wustl.edu	37	12	5841701	5841701	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020373.2	-1	validated	p.T510	0.021	94	0%	126	29.4%	0	-	-	-	-	NULL
ANO2	57101	genome.wustl.edu	37	12	5860021	5860021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020373.2	-1	validated	p.I387L	0.975	71	0%	52	23.1%	0	-	benign(0.008)	tolerated(1)	-	NULL
ANO2	57101	genome.wustl.edu	37	12	6031877	6031877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020373.2	-1	validated	p.K35R	0.020	20	0%	28	25%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
VWF	7450	genome.wustl.edu	37	12	6058327	6058327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000552.3	-1	reviewed	p.D2766N	0.499	56	0%	34	23.5%	81	1.2%	benign(0.009)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00041
VWF	7450	genome.wustl.edu	37	12	6138522	6138522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000552.3	-1	reviewed	p.K985E	1.000	374	0%	317	17.4%	7	0%	possibly_damaging(0.793)	deleterious(0.04)	deleterious(0.647)	HMMPfam_VWD,HMMSmart_SM00216
VWF	7450	genome.wustl.edu	37	12	6161870	6161870	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000552.3	-1	reviewed	p.P675	1.000	60	0%	78	25.6%	1	0%	-	-	-	superfamily_Serine proterase inhibitors,HMMPfam_TIL
TNFRSF1A	7132	genome.wustl.edu	37	12	6443283	6443283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001065.2	-1	reviewed	p.S56L	0.177	243	0%	215	32.6%	102	32.3%	probably_damaging(0.99)	tolerated(0.4)	neutral(0.458)	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
CD27	939	genome.wustl.edu	37	12	6559425	6559425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001242.4	+1	reviewed	p.E119K	0.581	125	0%	98	22.4%	12	0%	possibly_damaging(0.437)	tolerated(0.62)	neutral(0.146)	superfamily_TNF receptor-like
NCAPD2	9918	genome.wustl.edu	37	12	6640199	6640199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014865.3	+1	validated	p.K1359N	0.725	140	0%	96	35.4%	68	41.1%	benign(0.299)	tolerated(0.27)	neutral(0.126)	NULL
CHD4	1108	genome.wustl.edu	37	12	6692411	6692411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001273.2	-1	reviewed	p.R1338I	1.000	220	0%	204	29.9%	86	29%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1087
GPR162	27239	genome.wustl.edu	37	12	6935405	6935405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019858.1	+1	reviewed	p.R368C	1.000	40	0%	43	37.2%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
USP5	8078	genome.wustl.edu	37	12	6964599	6964599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098536.1	+1	validated	p.T49M	0.995	175	0%	185	32.4%	28	35.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
USP5	8078	genome.wustl.edu	37	12	6972496	6972496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098536.1	+1	validated	p.E637K	1.000	87	0%	85	29.4%	2	50%	benign(0.139)	tolerated(0.4)	neutral(0.028)	HMMPfam_UCH,superfamily_Cysteine proteinases
ATN1	1822	genome.wustl.edu	37	12	7047644	7047644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007026.1	+1	reviewed	p.K840E	1.000	58	0%	69	36.2%	120	46.6%	possibly_damaging(0.806)	tolerated(0.09)	deleterious(0.600)	HMMPfam_Atrophin-1
C1S	716	genome.wustl.edu	37	12	7171588	7171588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001734.3	+1	reviewed	p.D137Y	1.000	394	0%	335	11.3%	99	0%	possibly_damaging(0.545)	deleterious(0.01)	deleterious(0.591)	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
C1S	716	genome.wustl.edu	37	12	7177497	7177497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001734.3	+1	reviewed	p.D537Y	0.398	185	0.5%	178	11.2%	237	0.4%	benign(0.004)	deleterious(0)	neutral(0.445)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
RBP5	83758	genome.wustl.edu	37	12	7280937	7280937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031491.2	-1	provisional	p.T51A	0.007	204	0%	203	30%	1	0%	unknown(0)	-	-	HMMPfam_Lipocalin,superfamily_Calycin
CLSTN3	9746	genome.wustl.edu	37	12	7295599	7295599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014718.3	+1	validated	p.E559K	1.000	191	0%	216	30.1%	7	0%	possibly_damaging(0.93)	tolerated(0.18)	neutral(0.432)	NULL
ACSM4	341392	genome.wustl.edu	37	12	7463195	7463195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080454.1	+1	provisional	p.R158Q	0.007	69	0%	59	39%	0	-	benign(0.003)	tolerated(1)	-	HMMPfam_AMP-binding,superfamily_SSF56801
CD163L1	283316	genome.wustl.edu	37	12	7519879	7519879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174941.4	-1	reviewed	p.M1411T	0.049	198	0%	153	27.5%	6	16.6%	benign(0.008)	-	-	NULL
CD163L1	283316	genome.wustl.edu	37	12	7527243	7527243	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174941.4	-1	reviewed	p.S1068	0.099	214	0%	152	26.3%	2	0%	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
CD163L1	283316	genome.wustl.edu	37	12	7559321	7559321	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174941.4	-1	reviewed	p.V298	0.574	245	0%	268	30.6%	3	0%	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
CD163L1	283316	genome.wustl.edu	37	12	7586140	7586140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174941.4	-1	reviewed	p.P92Q	0.001	271	0%	323	42.4%	0	-	possibly_damaging(0.816)	tolerated(0.06)	deleterious(0.631)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163	9332	genome.wustl.edu	37	12	7635248	7635248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004244.4	-1	validated	p.R1080W	0.036	480	0%	313	32.9%	56	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
GDF3	9573	genome.wustl.edu	37	12	7842980	7842980	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020634.1	-1	reviewed	p.N197H	0.472	141	0%	174	25.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CLEC4C	170482	genome.wustl.edu	37	12	7898972	7898972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130441.2	-1	reviewed	p.V27I	0.000	72	0%	67	28.4%	0	-	benign(0.055)	tolerated(1)	neutral(0.004)	NULL
NANOG	79923	genome.wustl.edu	37	12	7947082	7947082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024865.2	+1	validated	p.M148I	1.000	75	0%	82	29.3%	0	-	benign(0.392)	deleterious(0.03)	deleterious(0.490)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
SLC2A14	144195	genome.wustl.edu	37	12	7980164	7980164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153449.2	-1	provisional	p.V287A	0.014	62	0%	93	36.6%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC2A14	144195	genome.wustl.edu	37	12	7985374	7985374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153449.2	-1	provisional	p.T42A	0.989	111	0%	127	26.8%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC2A3	6515	genome.wustl.edu	37	12	8083103	8083103	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006931.2	-1	validated	p.R216	0.993	242	0%	246	24.8%	8	0%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC2A3	6515	genome.wustl.edu	37	12	8084033	8084033	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006931.2	-1	validated	p.C106*	1.000	185	0%	152	28.9%	10	0%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
C3AR1	719	genome.wustl.edu	37	12	8211364	8211364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004054.2	-1	validated	p.V473A	0.000	377	0%	353	30.3%	21	0%	benign(0.001)	tolerated(0.83)	neutral(0.001)	superfamily_Family A G protein-coupled receptor-like
C3AR1	719	genome.wustl.edu	37	12	8211783	8211783	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004054.2	-1	validated	p.L333	0.000	269	0%	327	15.6%	8	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C3AR1	719	genome.wustl.edu	37	12	8212017	8212017	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004054.2	-1	validated	p.Y255*	0.000	315	0%	359	11.7%	12	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CLEC4A	50856	genome.wustl.edu	37	12	8278259	8278259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016184.3	+1	reviewed	p.F62C	0.003	290	0%	183	32.8%	2	0%	unknown(0)	-	-	NULL
ZNF705A	440077	genome.wustl.edu	37	12	8329638	8329638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004328.2	+1	validated	p.S121L	1.000	437	0%	422	32.2%	0	-	benign(0)	tolerated(0.88)	-	NULL
ZNF705A	440077	genome.wustl.edu	37	12	8329731	8329731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004328.2	+1	validated	p.S152Y	0.010	485	0.2%	487	29.6%	0	-	benign(0.404)	deleterious(0.02)	deleterious(0.513)	superfamily_SSF57667
CLEC4E	26253	genome.wustl.edu	37	12	8689852	8689852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014358.2	-1	reviewed	p.K77N	0.949	273	0%	215	32.6%	8	0%	possibly_damaging(0.894)	tolerated(1)	neutral(0.352)	NULL
CLEC4E	26253	genome.wustl.edu	37	12	8692500	8692500	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014358.2	-1	reviewed	p.A27	0.565	762	0%	565	28%	5	0%	-	-	-	NULL
AICDA	57379	genome.wustl.edu	37	12	8757968	8757968	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020661.2	-1	reviewed	p.C90	0.982	90	0%	68	25%	0	-	-	-	-	HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine deaminase-like
MFAP5	8076	genome.wustl.edu	37	12	8800774	8800774	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003480.2	-1	reviewed	p.G145	0.984	82	0%	75	36%	19	21%	-	-	-	NULL
RIMKLB	57494	genome.wustl.edu	37	12	8906545	8906545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020734.2	+1	validated	p.R185C	1.000	218	0%	201	26.4%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RimK,superfamily_Glutathione synthetase ATP-binding domain-like
A2ML1	144568	genome.wustl.edu	37	12	8995809	8995809	+	Missense_Mutation	SNP	G	G	A	rs142219499	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144670.3	+1	validated	p.R443Q	0.001	202	0%	188	29.3%	1	100%	benign(0.026)	tolerated(0.49)	neutral(0.011)	NULL
KLRG1	10219	genome.wustl.edu	37	12	9147794	9147794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005810.3	+1	reviewed	p.F89L	0.977	157	0%	123	34.1%	1	0%	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	HMMSmart_SM00034,superfamily_C-type lectin-like
A2M	2	genome.wustl.edu	37	12	9232372	9232372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000014.4	-1	reviewed	p.L965R	1.000	77	0%	66	33.3%	143	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl
A2M	2	genome.wustl.edu	37	12	9254154	9254154	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000014.4	-1	reviewed	p.L461	0.510	75	0%	81	25.9%	57	0%	-	-	-	HMMPfam_A2M_N_2
A2M	2	genome.wustl.edu	37	12	9265066	9265066	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000014.4	-1	reviewed	p.E113*	0.002	89	0%	71	32.4%	32	0%	-	-	-	HMMPfam_A2M_N
CLECL1	160365	genome.wustl.edu	37	12	9875232	9875232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172004.2	-1	validated	p.F165C	0.011	145	0%	163	32.5%	0	-	possibly_damaging(0.81)	deleterious(0.01)	deleterious(0.711)	NULL
CD69	969	genome.wustl.edu	37	12	9907003	9907003	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_026671.1	-1	reviewed	NULL	0.000	34	0%	21	42.9%	0	-	-	-	-	-
CD69	969	genome.wustl.edu	37	12	9907009	9907009	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_026671.1	-1	reviewed	NULL	0.000	40	0%	23	26.1%	0	-	-	-	-	-
KLRF1	51348	genome.wustl.edu	37	12	9985995	9985995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016523.1	+1	provisional	p.R94I	0.075	167	0%	125	27.2%	0	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
KLRF1	51348	genome.wustl.edu	37	12	9995030	9995030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016523.1	+1	provisional	p.K195N	0.004	231	0%	170	27.1%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC2B	9976	genome.wustl.edu	37	12	10010205	10010205	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005127.2	-1	reviewed	p.C35	0.435	80	0%	59	23.7%	13	0%	-	-	-	HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC12A	160364	genome.wustl.edu	37	12	10131978	10131978	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138337.5	+1	reviewed	p.L78	0.406	85	0%	54	29.6%	0	-	-	-	-	NULL
CLEC12A	160364	genome.wustl.edu	37	12	10133194	10133194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138337.5	+1	reviewed	p.K131N	0.973	284	0%	242	22.7%	1	0%	probably_damaging(1)	tolerated(0.76)	deleterious(0.501)	NULL
CLEC1A	51267	genome.wustl.edu	37	12	10251413	10251413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016511.2	-1	reviewed	p.R37C	0.000	28	0%	22	40.9%	0	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	NULL
CLEC7A	64581	genome.wustl.edu	37	12	10277698	10277698	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000354721	-1	known	p.Q189	0.033	34	0%	45	35.6%	0	-	-	-	-	NULL
CLEC7A	64581	genome.wustl.edu	37	12	10280284	10280284	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000422474	-1	known	p.R88	0.000	33	0%	48	22.9%	0	-	-	-	-	NULL
CLEC7A	64581	genome.wustl.edu	37	12	10282656	10282656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_197947.2	-1	reviewed	p.N9S	0.198	45	0%	40	27.5%	3	0%	probably_damaging(0.996)	tolerated(0.25)	deleterious(0.498)	NULL
KLRD1	3824	genome.wustl.edu	37	12	10462017	10462017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114396.1	+1	reviewed	p.S13Y	0.578	119	0%	78	38.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLRC1	3821	genome.wustl.edu	37	12	10599254	10599254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002259.4	-1	reviewed	p.D200Y	0.000	231	0%	170	29.4%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ENSG00000180574	0	genome.wustl.edu	37	12	10658601	10658601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000322446	+1	known	p.E34K	0.972	71	0%	83	37.3%	4	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
STYK1	55359	genome.wustl.edu	37	12	10783817	10783817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018423.2	-1	validated	p.E93G	0.994	202	0%	207	37.7%	0	-	benign(0.178)	tolerated(0.1)	neutral(0.303)	NULL
TAS2R7	50837	genome.wustl.edu	37	12	10954291	10954291	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023919.2	-1	reviewed	p.R293	0.062	108	0.9%	114	22.8%	2	0%	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R7	50837	genome.wustl.edu	37	12	10954570	10954570	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023919.2	-1	reviewed	p.S200	0.000	63	0%	96	30.2%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R8	50836	genome.wustl.edu	37	12	10958824	10958824	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023918.1	-1	reviewed	p.I252M	0.001	146	0%	142	31%	0	-	benign(0.013)	deleterious(0.03)	neutral(0.365)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R10	50839	genome.wustl.edu	37	12	10978177	10978177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023921.1	-1	reviewed	p.S231Y	0.954	273	0%	216	34.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R13	50838	genome.wustl.edu	37	12	11061021	11061021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023920.2	-1	reviewed	p.L293I	0.000	178	0%	147	29.3%	0	-	possibly_damaging(0.555)	deleterious(0)	deleterious(0.634)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R13	50838	genome.wustl.edu	37	12	11061365	11061365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023920.2	-1	reviewed	p.S178L	0.000	231	0%	199	29.6%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R50	259296	genome.wustl.edu	37	12	11138638	11138638	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176890.2	-1	validated	p.F274	0.000	261	0%	210	24.3%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R50	259296	genome.wustl.edu	37	12	11138717	11138717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176890.2	-1	validated	p.S248L	0.000	262	0%	231	28.6%	0	-	benign(0.016)	deleterious(0.03)	neutral(0.365)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R30	259293	genome.wustl.edu	37	12	11286486	11286486	+	Missense_Mutation	SNP	G	G	A	rs111498087	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001097643.1	-1	provisional	p.R120C	0.000	448	0%	363	34.2%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
ETV6	2120	genome.wustl.edu	37	12	11905391	11905391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001987.4	+1	reviewed	p.R14Q	1.000	219	0%	220	10%	5	0%	benign(0.144)	tolerated(0.22)	neutral(0.055)	NULL
LRP6	4040	genome.wustl.edu	37	12	12291438	12291438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002336.2	-1	reviewed	p.N1143T	1.000	339	0%	331	29.6%	4	50%	possibly_damaging(0.731)	tolerated(0.07)	deleterious(0.586)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
DUSP16	80824	genome.wustl.edu	37	12	12630939	12630939	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030640.2	-1	reviewed	p.E276*	1.000	229	0%	176	27.8%	3	33.3%	-	-	-	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
GPR19	2842	genome.wustl.edu	37	12	12814632	12814632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006143.2	-1	validated	p.W251R	1.000	116	0%	119	27.7%	0	-	benign(0.034)	tolerated(0.1)	neutral(0.288)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPRC5A	9052	genome.wustl.edu	37	12	13061998	13061998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003979.3	+1	reviewed	p.R272Q	0.000	302	0%	276	34.1%	71	29.5%	benign(0.006)	tolerated(0.59)	neutral(0.004)	HMMPfam_7tm_3
GRIN2B	2904	genome.wustl.edu	37	12	13717095	13717095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000834.3	-1	reviewed	p.G1026D	1.000	51	0%	45	37.8%	0	-	possibly_damaging(0.902)	tolerated(0.48)	neutral(0.367)	HMMPfam_NMDAR2_C
GRIN2B	2904	genome.wustl.edu	37	12	13764767	13764767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000834.3	-1	reviewed	p.V558I	1.000	314	0%	315	30.8%	0	-	possibly_damaging(0.585)	deleterious(0.02)	deleterious(0.585)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
GRIN2B	2904	genome.wustl.edu	37	12	13764768	13764768	+	Silent	SNP	G	G	A	rs187488896	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000834.3	-1	reviewed	p.D557	0.999	313	0%	317	31.9%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
GRIN2B	2904	genome.wustl.edu	37	12	14019129	14019129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000834.3	-1	reviewed	p.A5V	0.519	81	0%	93	32.3%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
PLBD1	79887	genome.wustl.edu	37	12	14659998	14659998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024829.5	-1	validated	p.G414D	1.000	211	0%	183	26.2%	23	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Phospholip_B
WBP11	51729	genome.wustl.edu	37	12	14952638	14952638	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016312.2	-1	reviewed	p.R41*	1.000	51	0%	66	24.2%	15	20%	-	-	-	HMMPfam_Wbp11
ERP27	121506	genome.wustl.edu	37	12	15067707	15067707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152321.2	-1	validated	p.R262C	0.178	145	0%	109	34.9%	0	-	benign(0.316)	deleterious(0.02)	deleterious(0.482)	NULL
ARHGDIB	397	genome.wustl.edu	37	12	15095481	15095481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001175.4	-1	validated	p.S194L	1.000	318	0%	288	25.3%	161	0%	benign(0.181)	tolerated(0.12)	neutral(0.277)	HMMPfam_Rho_GDI,superfamily_E set domains
ARHGDIB	397	genome.wustl.edu	37	12	15103500	15103500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001175.4	-1	validated	p.K49N	1.000	477	0%	488	17.2%	44	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rho_GDI,superfamily_E set domains
MGST1	4257	genome.wustl.edu	37	12	16510566	16510566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020300.3	+1	reviewed	p.A52S	0.000	76	0%	61	24.6%	20	0%	benign(0)	tolerated(0.97)	-	HMMPfam_MAPEG
LMO3	55885	genome.wustl.edu	37	12	16753789	16753789	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001395.1	-1	validated	p.L2	1.000	139	0%	137	22.6%	0	-	-	-	-	NULL
PIK3C2G	5288	genome.wustl.edu	37	12	18435374	18435374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004570.4	+1	reviewed	p.T120M	0.000	237	0%	249	32.9%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
PIK3C2G	5288	genome.wustl.edu	37	12	18443863	18443863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004570.4	+1	reviewed	p.P279L	0.952	97	0%	44	40.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PI3K_rbd,superfamily_Ubiquitin-like
AEBP2	121536	genome.wustl.edu	37	12	19653050	19653050	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114176.1	+1	validated	p.F398	1.000	61	0%	64	31.2%	10	60%	-	-	-	NULL
AEBP2	121536	genome.wustl.edu	37	12	19653071	19653071	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001114176.1	+1	validated	p.A405	0.987	68	0%	65	32.3%	13	23%	-	-	-	NULL
PDE3A	5139	genome.wustl.edu	37	12	20799828	20799828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000921.3	+1	validated	p.D837N	1.000	240	0%	160	31.2%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_HDc,superfamily_SSF109604
PDE3A	5139	genome.wustl.edu	37	12	20832971	20832971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000921.3	+1	validated	p.K1064N	0.988	189	0%	189	28.6%	8	12.5%	benign(0.215)	deleterious(0.02)	neutral(0.404)	superfamily_SSF109604
SLCO1B3	28234	genome.wustl.edu	37	12	21011428	21011428	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019844.2	+1	validated	p.P94	0.870	126	0%	108	19.4%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1B3	28234	genome.wustl.edu	37	12	21028325	21028325	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019844.2	+1	validated	p.S295*	0.000	200	0%	196	31.1%	2	0%	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1B3	28234	genome.wustl.edu	37	12	21036458	21036458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019844.2	+1	validated	p.F535S	0.001	134	0%	107	32.7%	2	0%	benign(0.01)	tolerated(0.4)	neutral(0.017)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
LST-3TM12	338821	genome.wustl.edu	37	12	21168707	21168707	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001009562.4	+1	validated	p.F26	1.000	94	0%	98	26.5%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLCO1B1	10599	genome.wustl.edu	37	12	21331623	21331623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006446.4	+1	reviewed	p.F199V	1.000	439	0%	375	29.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLCO1B1	10599	genome.wustl.edu	37	12	21355617	21355617	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006446.4	+1	reviewed	p.D443A	1.000	139	0%	98	36.7%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLCO1B1	10599	genome.wustl.edu	37	12	21392073	21392073	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006446.4	+1	reviewed	p.N676H	0.001	240	0%	195	29.7%	0	-	possibly_damaging(0.46)	tolerated(0.1)	neutral(0.438)	NULL
SLCO1A2	6579	genome.wustl.edu	37	12	21448564	21448564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021094.3	-1	reviewed	p.S413Y	0.057	212	0%	125	29.6%	0	-	possibly_damaging(0.44)	tolerated(0.41)	neutral(0.158)	HMMPfam_OATP,superfamily_MFS general substrate transporter
IAPP	3375	genome.wustl.edu	37	12	21526313	21526313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000415.2	+1	reviewed	p.L10I	0.004	179	0%	137	30.7%	0	-	possibly_damaging(0.941)	deleterious(0.04)	deleterious(0.736)	NULL
PYROXD1	79912	genome.wustl.edu	37	12	21620539	21620539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024854.3	+1	validated	p.F414Y	1.000	241	0%	205	27.3%	7	14.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
RECQL	5965	genome.wustl.edu	37	12	21624397	21624397	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002907.3	-1	reviewed	p.K544	0.993	206	0%	148	28.4%	10	0%	-	-	-	NULL
GYS2	2998	genome.wustl.edu	37	12	21757463	21757463	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021957.3	-1	reviewed	p.E22*	0.049	176	0%	148	24.3%	0	-	-	-	-	NULL
ABCC9	10060	genome.wustl.edu	37	12	22035735	22035735	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005691.2	-1	reviewed	p.L662	0.007	424	0%	268	13.1%	0	-	-	-	-	NULL
CMAS	55907	genome.wustl.edu	37	12	22211515	22211515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018686.3	+1	reviewed	p.E192K	0.994	148	0%	97	30.9%	40	32.5%	benign(0)	tolerated(0.84)	neutral(0.001)	HMMPfam_CTP_transf_3,superfamily_Nucleotide-diphospho-sugar transferases
KIAA0528	9847	genome.wustl.edu	37	12	22631294	22631294	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014802.1	-1	predicted	p.N619H	1.000	114	0%	85	32.9%	5	40%	benign(0.062)	tolerated(0.23)	neutral(0.045)	NULL
CASC1	55259	genome.wustl.edu	37	12	25264832	25264832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018272.3	-1	validated	p.K551N	0.000	205	0%	158	24.1%	2	0%	benign(0.029)	tolerated(0.31)	neutral(0.029)	NULL
CASC1	55259	genome.wustl.edu	37	12	25297532	25297532	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018272.3	-1	validated	p.R257*	0.010	224	0%	230	35.2%	3	0%	-	-	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	byCluster	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033360.2	-1	reviewed	p.G13D	1.000	65	0%	40	22.5%	7	42.8%	benign(0.184)	deleterious(0)	neutral(0.462)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPR2	3709	genome.wustl.edu	37	12	26580881	26580881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002223.2	-1	validated	p.L2304I	1.000	143	0%	118	11%	1	0%	benign(0.183)	tolerated(0.88)	neutral(0.017)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26640041	26640041	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002223.2	-1	validated	p.D1838	0.023	212	0%	156	32.7%	3	0%	-	-	-	NULL
ITPR2	3709	genome.wustl.edu	37	12	26647176	26647176	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002223.2	-1	validated	p.D1760	0.986	231	0%	161	24.8%	0	-	-	-	-	NULL
ITPR2	3709	genome.wustl.edu	37	12	26755429	26755429	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002223.2	-1	validated	e28-1	1.000	295	0%	279	34.8%	0	-	-	-	-	-
ITPR2	3709	genome.wustl.edu	37	12	26868343	26868343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002223.2	-1	validated	p.E248D	1.000	248	0%	191	28.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
ITPR2	3709	genome.wustl.edu	37	12	26869082	26869082	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002223.2	-1	validated	p.K207Q	1.000	108	0%	92	32.6%	1	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
ITPR2	3709	genome.wustl.edu	37	12	26875466	26875466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002223.2	-1	validated	p.K130T	1.000	247	0%	214	30.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_MIR domain (Pfam 02815),HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
MED21	9412	genome.wustl.edu	37	12	27180324	27180324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004264.3	+1	provisional	p.D68Y	1.000	260	0%	217	32.3%	12	16.6%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
STK38L	23012	genome.wustl.edu	37	12	27468018	27468018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015000.3	+1	validated	p.R248I	1.000	119	0%	126	35.7%	17	70.5%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ARNTL2	56938	genome.wustl.edu	37	12	27533238	27533238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020183.3	+1	provisional	p.E129*	1.000	363	0%	275	28%	6	16.6%	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
ENSG00000245311	0	genome.wustl.edu	37	12	27542991	27542991	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000500498	-1	known	NULL	0.002	320	0%	234	28.2%	0	-	-	-	-	-
ARNTL2	56938	genome.wustl.edu	37	12	27573351	27573351	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020183.3	+1	provisional	p.F599	0.367	151	0%	111	33.3%	16	50%	benign(0.003)	-	-	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27787849	27787849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003622.2	+1	reviewed	p.K24T	1.000	202	0%	205	27.3%	2	50%	probably_damaging(0.996)	tolerated(0.17)	deleterious(0.520)	NULL
KLHDC5	57542	genome.wustl.edu	37	12	27933944	27933944	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020782.1	+1	validated	p.E227	0.646	26	0%	29	34.5%	12	8.3%	-	-	-	superfamily_Galactose oxidase central domain
FAR2	55711	genome.wustl.edu	37	12	29446359	29446359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018099.3	+1	provisional	p.N106H	0.521	246	0%	234	31.2%	0	-	benign(0.187)	deleterious(0.04)	neutral(0.366)	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd
FAR2	55711	genome.wustl.edu	37	12	29450077	29450077	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018099.3	+1	provisional	p.I163	0.730	259	0%	275	28.4%	3	0%	-	-	-	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd
FAR2	55711	genome.wustl.edu	37	12	29486623	29486623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018099.3	+1	provisional	p.L482F	1.000	342	0%	292	30.8%	4	50%	benign(0.002)	tolerated(0.53)	neutral(0.007)	NULL
ERGIC2	51290	genome.wustl.edu	37	12	29509370	29509370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016570.2	-1	validated	p.H173N	0.990	139	0%	114	34.2%	58	43.1%	possibly_damaging(0.464)	deleterious(0.01)	deleterious(0.558)	HMMPfam_DUF1692
ERGIC2	51290	genome.wustl.edu	37	12	29514615	29514615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016570.2	-1	validated	p.V113I	0.966	216	0%	155	23.9%	39	33.3%	benign(0)	tolerated(0.92)	-	NULL
ERGIC2	51290	genome.wustl.edu	37	12	29521212	29521212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016570.2	-1	validated	p.R75I	1.000	134	0%	73	23.3%	33	33.3%	possibly_damaging(0.776)	deleterious(0.01)	deleterious(0.695)	NULL
OVCH1	341350	genome.wustl.edu	37	12	29592269	29592269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183378.2	-1	validated	p.N1086H	0.001	75	0%	56	12.5%	0	-	benign(0.176)	-	-	NULL
OVCH1	341350	genome.wustl.edu	37	12	29642672	29642672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183378.2	-1	validated	p.E195K	0.003	27	0%	22	22.7%	0	-	benign(0.02)	tolerated(0.86)	neutral(0.002)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
IPO8	10526	genome.wustl.edu	37	12	30784837	30784837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006390.2	-1	reviewed	p.T1003M	0.693	205	0%	157	35.7%	23	39.1%	possibly_damaging(0.732)	deleterious(0.01)	deleterious(0.673)	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30869574	30869574	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002259.1	-1	validated	p.E778*	1.000	343	0%	279	33.7%	3	0%	-	-	-	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30884440	30884440	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002259.1	-1	validated	p.K299N	0.997	159	0%	132	13.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30888067	30888067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002259.1	-1	validated	p.R215Q	0.887	254	0.4%	219	29.2%	0	-	possibly_damaging(0.781)	deleterious(0.04)	deleterious(0.641)	NULL
OVOS2	144203	genome.wustl.edu	37	12	31302319	31302319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343151.1	-1	model	p.Q325R	0.000	51	0%	36	19.4%	0	-	-	-	-	NULL
DENND5B	160518	genome.wustl.edu	37	12	31600574	31600574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144973.3	-1	validated	p.R587W	1.000	73	0%	82	32.9%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
METTL20	254013	genome.wustl.edu	37	12	31820696	31820696	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135863.1	+1	validated	p.G187	0.993	99	0%	80	28.7%	3	33.3%	-	-	-	HMMPfam_Methyltransf_16,superfamily_SSF53335
C12orf35	55196	genome.wustl.edu	37	12	32136903	32136903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018169.3	+1	validated	p.S1005I	0.000	72	0%	85	27.1%	14	35.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C12orf35	55196	genome.wustl.edu	37	12	32138842	32138842	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018169.3	+1	validated	p.E1651	0.000	96	0%	86	26.7%	25	36%	-	-	-	NULL
BICD1	636	genome.wustl.edu	37	12	32487524	32487524	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001714.2	+1	reviewed	p.T725	0.985	287	0%	242	31.4%	16	50%	-	-	-	HMMPfam_BicD
FGD4	121512	genome.wustl.edu	37	12	32760902	32760902	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139241.2	+1	reviewed	p.I335	0.991	246	0%	208	34.1%	2	50%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
DNM1L	10059	genome.wustl.edu	37	12	32863892	32863892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012062.3	+1	reviewed	p.K133N	1.000	134	0%	135	28.1%	17	41.1%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Dynamin_N,HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNM1L	10059	genome.wustl.edu	37	12	32891219	32891219	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012062.3	+1	reviewed	p.E566*	1.000	97	0%	74	36.5%	6	0%	-	-	-	NULL
SYT10	341359	genome.wustl.edu	37	12	33532802	33532802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198992.2	-1	provisional	p.R489*	1.000	364	0%	356	24.7%	0	-	-	-	-	HMMSmart_C2,superfamily_C2_CaLB
SYT10	341359	genome.wustl.edu	37	12	33579171	33579171	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198992.2	-1	provisional	p.S137	1.000	266	0%	294	25.9%	0	-	-	-	-	NULL
CPNE8	144402	genome.wustl.edu	37	12	39047692	39047692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153634.2	-1	reviewed	p.Q563K	1.000	85	0%	53	35.8%	3	0%	benign(0.144)	tolerated(0.21)	neutral(0.056)	NULL
CPNE8	144402	genome.wustl.edu	37	12	39071290	39071290	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153634.2	-1	reviewed	p.I446	1.000	67	0%	53	30.2%	1	0%	-	-	-	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
CPNE8	144402	genome.wustl.edu	37	12	39087545	39087545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153634.2	-1	reviewed	p.D353Y	1.000	291	0%	231	32.9%	0	-	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
KIF21A	55605	genome.wustl.edu	37	12	39726177	39726177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017641.3	-1	validated	p.L951I	0.998	527	0%	388	32.7%	6	0%	benign(0.009)	deleterious(0.03)	neutral(0.365)	superfamily_WD40 repeat-like
KIF21A	55605	genome.wustl.edu	37	12	39750650	39750650	+	Nonsense_Mutation	SNP	C	C	A	rs143300316		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017641.3	-1	validated	p.E485*	1.000	102	0%	92	35.9%	3	0%	-	-	-	NULL
KIF21A	55605	genome.wustl.edu	37	12	39760190	39760190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017641.3	-1	validated	p.E289K	1.000	194	0%	131	24.4%	1	100%	benign(0.07)	tolerated(0.36)	neutral(0.025)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCD2	225	genome.wustl.edu	37	12	40013124	40013124	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005164.3	-1	reviewed	p.K98	1.000	160	0%	131	29.8%	0	-	-	-	-	HMMPfam_ABC_membrane_2
C12orf40	283461	genome.wustl.edu	37	12	40078688	40078688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031748.2	+1	validated	p.E436K	1.000	159	0%	139	19.4%	0	-	probably_damaging(0.959)	-	-	NULL
C12orf40	283461	genome.wustl.edu	37	12	40115033	40115033	+	Missense_Mutation	SNP	G	G	A	rs138195010	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031748.2	+1	validated	p.E647K	0.917	119	0%	103	35%	0	-	probably_damaging(0.991)	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40692091	40692091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198578.3	+1	reviewed	p.T1048R	0.943	106	0%	99	27.3%	0	-	probably_damaging(0.955)	tolerated(0.07)	deleterious(0.718)	HMMPfam_LRR_1,superfamily_SSF52058
LRRK2	120892	genome.wustl.edu	37	12	40699702	40699702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198578.3	+1	reviewed	p.P1298H	1.000	109	0%	75	16%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_SSF52058
LRRK2	120892	genome.wustl.edu	37	12	40722206	40722206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198578.3	+1	reviewed	p.E1901K	1.000	234	0%	189	18.5%	1	0%	possibly_damaging(0.772)	tolerated(0.12)	deleterious(0.547)	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
LRRK2	120892	genome.wustl.edu	37	12	40745392	40745392	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198578.3	+1	reviewed	p.L2145	0.005	66	0%	40	42.5%	1	0%	-	-	-	superfamily_WD40_like
LRRK2	120892	genome.wustl.edu	37	12	40758660	40758660	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198578.3	+1	reviewed	p.E2400*	0.000	82	0%	65	15.4%	0	-	-	-	-	superfamily_WD40_like
CNTN1	1272	genome.wustl.edu	37	12	41316152	41316152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001843.2	+1	reviewed	p.D108Y	1.000	147	0%	147	30.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PDZRN4	29951	genome.wustl.edu	37	12	41903667	41903667	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013377.3	+1	validated	p.I127M	0.797	138	0%	153	27.5%	0	-	benign(0.004)	tolerated(0.5)	neutral(0.010)	superfamily_PDZ
PDZRN4	29951	genome.wustl.edu	37	12	41966951	41966951	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013377.3	+1	validated	p.S532	0.000	479	0%	384	32.6%	0	-	-	-	-	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41967365	41967365	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013377.3	+1	validated	p.D670	0.964	179	0%	176	27.8%	0	-	-	-	-	NULL
GXYLT1	283464	genome.wustl.edu	37	12	42503464	42503464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173601.1	-1	validated	p.F172L	1.000	94	0%	58	34.5%	6	50%	possibly_damaging(0.792)	tolerated(0.1)	deleterious(0.583)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
PPHLN1	51535	genome.wustl.edu	37	12	42787460	42787460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016488.6	+1	reviewed	p.E246G	0.954	146	0%	127	31.5%	55	40%	benign(0.117)	deleterious(0)	neutral(0.454)	NULL
PPHLN1	51535	genome.wustl.edu	37	12	42836514	42836514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016488.6	+1	reviewed	p.E366K	0.443	315	0%	284	30.6%	6	83.3%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ADAMTS20	80070	genome.wustl.edu	37	12	43837677	43837677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025003.3	-1	validated	p.V736A	0.018	220	0%	165	26.7%	0	-	possibly_damaging(0.602)	tolerated(0.72)	neutral(0.210)	HMMPfam_ADAM_spacer1
TMEM117	84216	genome.wustl.edu	37	12	44537360	44537360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032256.1	+1	provisional	p.R148Q	1.000	119	0%	90	28.9%	3	33.3%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	NULL
TMEM117	84216	genome.wustl.edu	37	12	44782223	44782223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032256.1	+1	provisional	p.S438Y	1.000	301	0%	242	31%	3	66.6%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
NELL2	4753	genome.wustl.edu	37	12	45059323	45059323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145107.1	-1	reviewed	p.S513Y	1.000	246	0%	239	14.6%	8	12.5%	possibly_damaging(0.557)	deleterious(0)	deleterious(0.635)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,superfamily_ConA_like_lec_gl,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
DBX2	440097	genome.wustl.edu	37	12	45410370	45410370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004329.2	-1	validated	p.K240R	1.000	307	0%	303	30.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
DBX2	440097	genome.wustl.edu	37	12	45417553	45417553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004329.2	-1	validated	p.Q208H	1.000	389	0%	374	25.4%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ARID2	196528	genome.wustl.edu	37	12	46242676	46242676	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152641.2	+1	validated	p.Y546*	1.000	122	0%	133	32.3%	2	0%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
ARID2	196528	genome.wustl.edu	37	12	46244875	46244875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152641.2	+1	validated	p.S990L	0.999	281	0%	229	32.8%	5	0%	possibly_damaging(0.713)	tolerated(0.21)	neutral(0.301)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46321609	46321609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004719.2	-1	validated	p.Q625H	0.000	255	0%	252	29.4%	11	27.2%	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
SLC38A2	54407	genome.wustl.edu	37	12	46757607	46757607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018976.4	-1	validated	p.R319H	1.000	131	0%	99	31.3%	83	36.1%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Aa_trans
LOC100288986	100288986	genome.wustl.edu	37	12	47629473	47629473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343197.1	-1	model	p.E7K	0.876	47	0%	73	23.3%	6	0%	-	-	-	NULL
RPAP3	79657	genome.wustl.edu	37	12	48091380	48091380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024604.2	-1	reviewed	p.K139N	1.000	205	0%	200	35%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
RAPGEF3	10411	genome.wustl.edu	37	12	48142692	48142692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098531.2	-1	validated	p.R355Q	1.000	135	0%	97	32%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00100,superfamily_Ras GEF,superfamily_cAMP-binding domain-like
SENP1	29843	genome.wustl.edu	37	12	48477430	48477430	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014554.2	-1	validated	p.R166*	1.000	84	0%	70	25.7%	1	100%	-	-	-	NULL
OR10AD1	121275	genome.wustl.edu	37	12	48596474	48596474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004134.1	-1	provisional	p.F201S	0.873	123	0%	157	24.8%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KANSL2	54934	genome.wustl.edu	37	12	49054386	49054386	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017822.3	-1	validated	p.T330	0.995	61	0%	47	36.2%	14	21.4%	-	-	-	NULL
SNORA2B	677794	genome.wustl.edu	37	12	49061316	49061316	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_002951.1	-1	provisional	NULL	0.981	206	0%	166	26.5%	0	-	-	-	-	-
CCNT1	904	genome.wustl.edu	37	12	49099658	49099658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001240.2	-1	reviewed	p.F89L	0.999	163	0%	150	27.3%	1	100%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like
CCNT1	904	genome.wustl.edu	37	12	49110359	49110359	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001240.2	-1	reviewed	p.E34*	1.000	218	0%	219	35.2%	0	-	-	-	-	HMMPfam_Cyclin_N,superfamily_Cyclin_like
CCDC65	85478	genome.wustl.edu	37	12	49315113	49315113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033124.4	+1	validated	p.E448K	0.998	152	0.7%	145	31.7%	4	25%	benign(0.114)	deleterious(0.04)	neutral(0.358)	NULL
MLL2	8085	genome.wustl.edu	37	12	49432153	49432153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003482.3	-1	validated	p.D2996N	1.000	47	0%	30	16.7%	0	-	unknown(0)	-	-	NULL
LMBR1L	55716	genome.wustl.edu	37	12	49496925	49496925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018113.2	-1	validated	p.L194I	1.000	49	0%	59	30.5%	15	40%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_LMBR1
MCRS1	10445	genome.wustl.edu	37	12	49959429	49959429	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012300.1	-1	validated	p.F70	0.991	300	0%	241	27.8%	41	34.1%	-	-	-	NULL
FAM186B	84070	genome.wustl.edu	37	12	49994227	49994227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032130.2	-1	validated	p.S399L	0.001	195	0%	219	30.1%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
FMNL3	91010	genome.wustl.edu	37	12	50043678	50043678	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175736.4	-1	validated	p.F677	0.998	77	0%	53	24.5%	10	20%	-	-	-	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
NCKAP5L	57701	genome.wustl.edu	37	12	50189215	50189215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037806.3	-1	validated	p.S810G	0.940	44	0%	34	47.1%	5	20%	benign(0.135)	tolerated(0.16)	neutral(0.071)	NULL
SMARCD1	6602	genome.wustl.edu	37	12	50482348	50482348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003076.4	+1	reviewed	p.F233L	1.000	138	0%	123	25.2%	24	45.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LARP4	113251	genome.wustl.edu	37	12	50856394	50856394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199188.2	+1	validated	p.R461Q	1.000	173	0%	127	29.9%	5	20%	possibly_damaging(0.942)	tolerated(0.23)	neutral(0.428)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51112508	51112508	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173602.2	+1	validated	p.S956	1.000	63	0%	47	21.3%	5	40%	-	-	-	NULL
SLC11A2	4891	genome.wustl.edu	37	12	51393146	51393146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000617.2	-1	reviewed	p.L197F	1.000	209	0%	161	32.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nramp
CSRNP2	81566	genome.wustl.edu	37	12	51461744	51461744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030809.1	-1	provisional	p.K140N	1.000	127	0%	98	32.7%	16	43.7%	possibly_damaging(0.45)	deleterious(0.04)	deleterious(0.496)	NULL
SMAGP	57228	genome.wustl.edu	37	12	51640590	51640590	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031628.1	-1	validated	p.L20	0.021	14	0%	20	30%	25	24%	-	-	-	NULL
SLC4A8	9498	genome.wustl.edu	37	12	51856106	51856106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039960.1	+1	validated	p.V372I	1.000	290	0%	261	34.1%	0	-	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A8	9498	genome.wustl.edu	37	12	51864289	51864289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039960.1	+1	validated	p.K546N	1.000	294	0%	251	29.1%	3	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_HCO3_cotransp
SLC4A8	9498	genome.wustl.edu	37	12	51890869	51890869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039960.1	+1	validated	p.K1014N	1.000	146	0%	172	24.4%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
SCN8A	6334	genome.wustl.edu	37	12	52100461	52100461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014191.2	+1	reviewed	p.D533N	1.000	135	0%	112	31.2%	0	-	possibly_damaging(0.825)	tolerated(0.6)	neutral(0.317)	NULL
SCN8A	6334	genome.wustl.edu	37	12	52200655	52200655	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014191.2	+1	reviewed	p.F1795	0.978	169	0%	135	28.1%	0	-	-	-	-	NULL
ANKRD33	341405	genome.wustl.edu	37	12	52284397	52284397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182608.3	+1	validated	p.R223W	0.074	24	0%	20	30%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00248,superfamily_Ankyrin repeat
ACVRL1	94	genome.wustl.edu	37	12	52309863	52309863	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000020.2	+1	reviewed	p.I364	0.976	69	0%	64	35.9%	25	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
KRT84	3890	genome.wustl.edu	37	12	52776273	52776273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033045.3	-1	reviewed	p.N287S	0.991	97	0%	69	26.1%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Filament
KRT84	3890	genome.wustl.edu	37	12	52779170	52779170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033045.3	-1	reviewed	p.A67V	0.001	142	0%	134	28.4%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
KRT6B	3854	genome.wustl.edu	37	12	52842644	52842644	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005555.3	-1	reviewed	p.I395	0.754	220	0%	196	35.7%	22	0%	-	-	-	HMMPfam_Filament
KRT71	112802	genome.wustl.edu	37	12	52940198	52940198	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033448.2	-1	reviewed	p.G399	0.017	105	0%	94	29.8%	0	-	-	-	-	HMMPfam_Filament
KRT71	112802	genome.wustl.edu	37	12	52946439	52946439	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033448.2	-1	reviewed	p.F141	0.988	131	0%	136	32.4%	0	-	-	-	-	HMMPfam_Filament
KRT71	112802	genome.wustl.edu	37	12	52946836	52946836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033448.2	-1	reviewed	p.S9L	0.021	108	0%	97	15.5%	0	-	possibly_damaging(0.832)	deleterious(0.02)	deleterious(0.700)	NULL
KRT74	121391	genome.wustl.edu	37	12	52967252	52967252	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175053.3	-1	reviewed	p.L104	0.007	51	0%	47	34%	0	-	-	-	-	NULL
KRT72	140807	genome.wustl.edu	37	12	52994873	52994873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080747.2	-1	reviewed	p.R122C	1.000	65	0%	54	31.5%	0	-	benign(0.255)	deleterious(0.03)	neutral(0.391)	NULL
KRT73	319101	genome.wustl.edu	37	12	53004586	53004586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175068.2	-1	reviewed	p.E382K	1.000	96	0%	74	33.8%	0	-	possibly_damaging(0.495)	deleterious(0.01)	deleterious(0.571)	HMMPfam_Filament
ENSG00000248214	0	genome.wustl.edu	37	12	53007426	53007426	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000507911	+1	known	NULL	0.000	73	0%	64	40.6%	0	-	-	-	-	-
KRT3	3850	genome.wustl.edu	37	12	53187991	53187991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_057088.2	-1	reviewed	p.Y257C	0.057	173	0%	150	33.3%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_Filament
KRT78	196374	genome.wustl.edu	37	12	53237961	53237961	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173352.2	-1	reviewed	p.R321	0.766	527	0%	695	27.3%	1	0%	-	-	-	HMMPfam_Filament
CSAD	51380	genome.wustl.edu	37	12	53554040	53554040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015989.4	-1	validated	p.D371N	1.000	84	0%	66	33.3%	3	0%	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
MFSD5	84975	genome.wustl.edu	37	12	53646939	53646939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032889.4	+1	validated	p.S107Y	1.000	348	0%	460	35%	46	15.2%	possibly_damaging(0.911)	tolerated(0.21)	neutral(0.407)	HMMPfam_DUF791,superfamily_MFS general substrate transporter
ESPL1	9700	genome.wustl.edu	37	12	53686161	53686161	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012291.4	+1	validated	p.R1966*	1.000	137	0%	139	30.2%	6	0%	-	-	-	HMMPfam_Peptidase_C50
TARBP2	6895	genome.wustl.edu	37	12	53898557	53898557	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_134323.1	+1	reviewed	p.E191*	1.000	110	0%	106	37.7%	49	10.2%	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
TARBP2	6895	genome.wustl.edu	37	12	53899581	53899581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_134323.1	+1	reviewed	p.V297A	1.000	129	0%	122	35.2%	46	17.3%	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
ATF7	11016	genome.wustl.edu	37	12	53918426	53918426	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130059.1	-1	validated	p.C360	1.000	60	0%	60	28.3%	10	0%	-	-	-	HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1
CALCOCO1	57658	genome.wustl.edu	37	12	54113569	54113569	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020898.2	-1	validated	p.L268R	0.991	421	0%	384	34.6%	14	28.5%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_CALCOCO1
HOXC13	3229	genome.wustl.edu	37	12	54338822	54338822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017410.2	+1	reviewed	p.R259C	0.999	146	0%	173	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Homeodomain_like
HOXC10	3226	genome.wustl.edu	37	12	54379402	54379402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017409.3	+1	reviewed	p.A120V	1.000	22	0%	35	25.7%	0	-	benign(0.011)	tolerated(0.18)	neutral(0.057)	NULL
HOXC6	3223	genome.wustl.edu	37	12	54422488	54422488	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004503.3	+1	reviewed	p.V61	1.000	193	0%	174	30.5%	0	-	-	-	-	NULL
CBX5	23468	genome.wustl.edu	37	12	54646006	54646006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127321.1	-1	reviewed	p.H48R	1.000	200	0%	141	34%	14	28.5%	possibly_damaging(0.84)	deleterious(0)	deleterious(0.766)	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,superfamily_Chromo domain-like
MIR148B	442892	genome.wustl.edu	37	12	54731087	54731087	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000362252	+1	known	NULL	1.000	285	0%	210	26.2%	0	-	-	-	-	-
ITGA5	3678	genome.wustl.edu	37	12	54795409	54795409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002205.2	-1	reviewed	p.R783W	0.957	187	0%	174	30.5%	43	0%	possibly_damaging(0.827)	deleterious(0.01)	deleterious(0.720)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
NCKAP1L	3071	genome.wustl.edu	37	12	54912712	54912712	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005337.4	+1	reviewed	p.K479*	0.962	180	0%	240	32.1%	3	0%	-	-	-	HMMPfam_Nckap1
NCKAP1L	3071	genome.wustl.edu	37	12	54932703	54932703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005337.4	+1	reviewed	p.E1073D	0.999	117	0%	122	26.2%	15	0%	benign(0.393)	tolerated(0.1)	neutral(0.412)	HMMPfam_Nckap1
PDE1B	5153	genome.wustl.edu	37	12	54967432	54967432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000924.3	+1	validated	p.D335N	1.000	283	0%	326	26.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE1B	5153	genome.wustl.edu	37	12	54968959	54968959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000924.3	+1	validated	p.H381R	1.000	299	0%	300	25%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
NEUROD4	58158	genome.wustl.edu	37	12	55420418	55420418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021191.2	+1	validated	p.E65D	0.979	211	0%	180	27.8%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
OR9K2	441639	genome.wustl.edu	37	12	55523703	55523703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005243.1	+1	provisional	p.L51I	0.130	331	0%	291	15.5%	0	-	possibly_damaging(0.604)	tolerated(0.7)	neutral(0.211)	superfamily_Family A G protein-coupled receptor-like
OR6C6	283365	genome.wustl.edu	37	12	55688128	55688128	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005493.1	-1	provisional	p.E297*	0.568	128	0%	107	29.9%	0	-	-	-	-	superfamily_SSF81321
OR6C6	283365	genome.wustl.edu	37	12	55688227	55688227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005493.1	-1	provisional	p.E264K	0.009	159	0%	158	31%	0	-	probably_damaging(0.97)	tolerated(0.11)	deleterious(0.684)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C6	283365	genome.wustl.edu	37	12	55688992	55688992	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005493.1	-1	provisional	p.E9*	0.000	148	0%	142	32.4%	0	-	-	-	-	superfamily_SSF81321
OR6C3	254786	genome.wustl.edu	37	12	55726314	55726314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_054104.1	+1	provisional	p.S277Y	0.070	253	0%	164	34.1%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C75	390323	genome.wustl.edu	37	12	55759543	55759543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005497.1	+1	provisional	p.T217A	0.000	201	0%	181	29.3%	0	-	benign(0.006)	tolerated(0.32)	neutral(0.024)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C65	403282	genome.wustl.edu	37	12	55794848	55794848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005518.1	+1	provisional	p.S179Y	0.000	241	0%	279	29%	0	-	possibly_damaging(0.807)	tolerated(1)	neutral(0.304)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C76	390326	genome.wustl.edu	37	12	55820448	55820448	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005183.1	+1	provisional	p.I137	0.001	314	0%	244	28.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6C68	403284	genome.wustl.edu	37	12	55886355	55886355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005519.1	+1	provisional	p.S70Y	0.020	351	0%	367	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ITGA7	3679	genome.wustl.edu	37	12	56078954	56078954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144996.1	-1	reviewed	p.R1105M	1.000	97	0%	79	31.6%	7	0%	possibly_damaging(0.78)	deleterious(0.02)	deleterious(0.674)	NULL
SARNP	84324	genome.wustl.edu	37	12	56194405	56194405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033082.3	-1	reviewed	p.E64D	1.000	144	0%	131	34.4%	127	33%	unknown(0)	tolerated(0.17)	-	NULL
DNAJC14	85406	genome.wustl.edu	37	12	56221763	56221763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032364.5	-1	validated	p.R227Q	0.959	126	0%	158	32.9%	16	31.2%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
DGKA	1606	genome.wustl.edu	37	12	56347534	56347534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001345.4	+1	reviewed	p.F730L	1.000	211	0%	136	33.1%	30	33.3%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
SUOX	6821	genome.wustl.edu	37	12	56397578	56397578	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000456.2	+1	reviewed	p.P135	0.994	138	0%	99	13.1%	16	0%	-	-	-	HMMPfam_Cyt-b5,superfamily_Cyt_B5
RNF41	10193	genome.wustl.edu	37	12	56601530	56601530	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005785.2	-1	reviewed	p.R168*	1.000	236	0%	276	30.4%	30	20%	-	-	-	HMMPfam_USP8_interact
SLC39A5	283375	genome.wustl.edu	37	12	56628653	56628653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135195.1	+1	validated	p.A173T	0.997	105	1%	131	30.5%	6	0%	benign(0.108)	tolerated(0.68)	neutral(0.011)	NULL
ANKRD52	283373	genome.wustl.edu	37	12	56641521	56641521	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173595.3	-1	validated	p.I672	0.349	35	0%	24	29.2%	6	33.3%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD52	283373	genome.wustl.edu	37	12	56650865	56650865	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173595.3	-1	validated	p.A65	1.000	27	0%	18	33.3%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
COQ10A	93058	genome.wustl.edu	37	12	56662915	56662915	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144576.3	+1	validated	p.K118	1.000	107	0%	145	22.8%	6	0%	-	-	-	HMMPfam_Polyketide_cyc
STAT2	6773	genome.wustl.edu	37	12	56749495	56749495	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005419.3	-1	reviewed	p.Q126H	0.144	434	0%	422	28.4%	19	21%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	superfamily_Transcription factor STAT-4 N-domain
TIMELESS	8914	genome.wustl.edu	37	12	56814409	56814409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003920.3	-1	validated	p.E1058K	0.909	185	0%	238	33.6%	21	28.5%	benign(0)	tolerated(0.94)	-	HMMPfam_TIMELESS_C
TIMELESS	8914	genome.wustl.edu	37	12	56824744	56824744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003920.3	-1	validated	p.R277Q	1.000	154	0%	159	39%	8	37.5%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_TIMELESS
MIP	4284	genome.wustl.edu	37	12	56845189	56845189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012064.3	-1	reviewed	p.L223I	1.000	199	0%	206	27.2%	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	superfamily_MIP
MIP	4284	genome.wustl.edu	37	12	56848301	56848301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012064.3	-1	reviewed	p.R33C	1.000	83	0%	79	30.4%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_MIP,superfamily_MIP
GLS2	27165	genome.wustl.edu	37	12	56872890	56872890	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000486896	-1	known	p.S149*	1.000	180	0.6%	225	35.6%	1	100%	-	-	-	NULL
BAZ2A	11176	genome.wustl.edu	37	12	56997404	56997404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013449.3	-1	validated	p.R1042H	1.000	211	0%	203	24.6%	11	45.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HSD17B6	8630	genome.wustl.edu	37	12	57178728	57178728	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003725.2	+1	reviewed	p.R222*	0.000	319	0.3%	222	11.3%	1	0%	-	-	-	superfamily_NAD(P)-bd
HSD17B6	8630	genome.wustl.edu	37	12	57181005	57181005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003725.2	+1	reviewed	p.R278Q	0.800	144	0%	137	30.7%	3	0%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	superfamily_NAD(P)-bd
STAT6	6778	genome.wustl.edu	37	12	57501063	57501063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003153.4	-1	reviewed	p.A97D	1.000	162	0%	115	31.3%	13	46.1%	benign(0.04)	deleterious(0.04)	neutral(0.351)	HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain
LRP1	4035	genome.wustl.edu	37	12	57549993	57549993	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002332.2	+1	reviewed	p.T448	0.181	112	0%	123	30.1%	0	-	-	-	-	superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57599359	57599359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002332.2	+1	reviewed	p.R3830H	1.000	36	0%	19	42.1%	36	13.8%	benign(0.011)	tolerated(0.41)	neutral(0.015)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
MBD6	114785	genome.wustl.edu	37	12	57920420	57920420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052897.3	+1	validated	p.G498*	1.000	54	0%	55	43.6%	13	23%	-	-	-	NULL
MBD6	114785	genome.wustl.edu	37	12	57922249	57922249	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000300263	+1	known	p.E176*	1.000	45	0%	52	38.5%	12	16.6%	-	-	-	NULL
KIF5A	3798	genome.wustl.edu	37	12	57963880	57963880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004984.2	+1	reviewed	p.A410T	0.964	26	0%	26	26.9%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
KIF5A	3798	genome.wustl.edu	37	12	57972039	57972039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004984.2	+1	reviewed	p.E818K	1.000	752	0%	603	25.9%	0	-	benign(0.103)	tolerated(0.22)	neutral(0.050)	superfamily_Prefoldin
DTX3	196403	genome.wustl.edu	37	12	58002327	58002327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000413885	+1	known	p.R262W	0.865	99	0%	100	36%	11	9%	benign(0.339)	tolerated(0.1)	neutral(0.393)	NULL
ARHGEF25	115557	genome.wustl.edu	37	12	58007489	58007489	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001111270.1	+1	validated	p.S205	0.996	128	0.8%	69	31.9%	5	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
SLC26A10	65012	genome.wustl.edu	37	12	58018721	58018721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133489.2	+1	validated	p.R434C	0.298	198	0%	176	22.7%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
CYP27B1	1594	genome.wustl.edu	37	12	58158182	58158182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000785.3	-1	reviewed	p.A372V	1.000	238	0%	202	30.2%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
CYP27B1	1594	genome.wustl.edu	37	12	58158202	58158202	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000785.3	-1	reviewed	p.S365	1.000	225	0%	185	31.9%	6	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
METTL1	4234	genome.wustl.edu	37	12	58163455	58163455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005371.5	-1	reviewed	p.K156E	1.000	139	0%	90	30%	45	24.4%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Methyltransf_4,superfamily_SSF53335
AVIL	10677	genome.wustl.edu	37	12	58201500	58201500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006576.3	-1	reviewed	p.I402T	1.000	123	0%	125	32%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins,superfamily_C-terminal gelsolin-like domain of Sec23/24
AVIL	10677	genome.wustl.edu	37	12	58204855	58204855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006576.3	-1	reviewed	p.D132N	0.000	168	0%	133	34.6%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins
LRIG3	121227	genome.wustl.edu	37	12	59282704	59282704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153377.3	-1	provisional	p.T234A	1.000	358	0%	235	23.8%	7	71.4%	possibly_damaging(0.729)	tolerated(0.15)	deleterious(0.506)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
SLC16A7	9194	genome.wustl.edu	37	12	60098796	60098796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004731.3	+1	provisional	p.G72R	1.000	98	0%	67	20.9%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FAM19A2	338811	genome.wustl.edu	37	12	62261196	62261196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178539.3	-1	reviewed	p.R4I	1.000	230	0%	205	30.7%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
MON2	23041	genome.wustl.edu	37	12	62929358	62929358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015026.2	+1	validated	p.A590V	1.000	133	0%	98	32.7%	0	-	benign(0.004)	tolerated(0.1)	neutral(0.286)	NULL
MON2	23041	genome.wustl.edu	37	12	62949801	62949801	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015026.2	+1	validated	p.R1080*	1.000	54	0%	53	32.1%	3	0%	-	-	-	superfamily_ARM-type_fold
DPY19L2	283417	genome.wustl.edu	37	12	64002439	64002439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173812.4	-1	validated	p.R412I	0.983	113	0%	87	27.6%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_DUF2211
SRGAP1	57522	genome.wustl.edu	37	12	64238653	64238653	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020762.2	+1	validated	p.S19	1.000	191	0%	123	30.1%	0	-	-	-	-	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64502736	64502736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020762.2	+1	validated	p.A613V	1.000	246	0%	239	28.5%	0	-	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SRGAP1	57522	genome.wustl.edu	37	12	64521459	64521459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020762.2	+1	validated	p.D832G	1.000	113	0%	85	30.6%	1	0%	benign(0.004)	tolerated(0.59)	neutral(0.004)	superfamily_SH3-domain
C12orf56	115749	genome.wustl.edu	37	12	64664447	64664447	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099676.2	-1	validated	p.S384	0.975	167	0%	159	22.6%	0	-	-	-	-	NULL
C12orf56	115749	genome.wustl.edu	37	12	64697479	64697479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099676.2	-1	validated	p.S190Y	0.235	49	0%	30	20%	0	-	benign(0)	tolerated(0.95)	-	NULL
XPOT	11260	genome.wustl.edu	37	12	64810527	64810527	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007235.3	+1	reviewed	p.K65Q	1.000	100	0%	93	33.3%	14	28.5%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	superfamily_ARM-type_fold
TMBIM4	51643	genome.wustl.edu	37	12	66531887	66531887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016056.2	-1	validated	p.F190L	1.000	128	0%	94	22.3%	86	32.5%	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	HMMPfam_UPF0005
GRIP1	23426	genome.wustl.edu	37	12	66838440	66838440	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021150.3	-1	reviewed	p.F485	0.503	161	0%	113	30.1%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
IFNG	3458	genome.wustl.edu	37	12	68551865	68551865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000619.2	-1	reviewed	p.R65I	0.780	85	0%	83	33.7%	2	0%	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
IL26	55801	genome.wustl.edu	37	12	68595839	68595839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018402.1	-1	reviewed	p.E130*	0.997	88	0%	59	33.9%	0	-	-	-	-	superfamily_4_helix_cytokine,HMMPfam_IL10,HMMSmart_IL10
MDM1	56890	genome.wustl.edu	37	12	68696591	68696591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017440.4	-1	reviewed	p.P594H	0.999	320	0%	187	13.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NUP107	57122	genome.wustl.edu	37	12	69094629	69094629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020401.2	+1	reviewed	p.Y226H	1.000	139	0%	148	16.9%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nup84_Nup100
NUP107	57122	genome.wustl.edu	37	12	69103078	69103078	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020401.2	+1	reviewed	p.R264*	1.000	117	0%	95	17.9%	10	0%	-	-	-	HMMPfam_Nup84_Nup100
NUP107	57122	genome.wustl.edu	37	12	69126423	69126423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020401.2	+1	reviewed	p.R669C	1.000	90	0%	49	34.7%	17	70.5%	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	HMMPfam_Nup84_Nup100
NUP107	57122	genome.wustl.edu	37	12	69127242	69127242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020401.2	+1	reviewed	p.K704N	0.996	118	0%	115	30.4%	25	76%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Nup84_Nup100
MDM2	4193	genome.wustl.edu	37	12	69222705	69222705	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002392.3	+1	reviewed	p.S226	0.724	142	0%	141	27%	10	50%	-	-	-	superfamily_SWIB/MDM2 domain
CPM	1368	genome.wustl.edu	37	12	69250396	69250396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005502.2	-1	reviewed	p.F385V	1.000	304	0%	279	31.9%	3	0%	probably_damaging(0.969)	tolerated(0.13)	deleterious(0.664)	HMMSmart_Zn_pept,superfamily_CarboxypepD_reg
CCT2	10576	genome.wustl.edu	37	12	69981762	69981762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006431.2	+1	reviewed	p.T103	1.000	70	0%	83	28.9%	165	41.8%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,PatternScan_PROTEIN_KINASE_ATP
KCNMB4	27345	genome.wustl.edu	37	12	70824419	70824419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014505.4	+1	reviewed	p.R207C	1.000	116	0%	127	32.3%	2	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
PTPRB	5787	genome.wustl.edu	37	12	70963598	70963598	+	Missense_Mutation	SNP	C	C	A	rs111634123	byCluster;byFrequency;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001109754.1	-1	reviewed	p.S1164I	0.003	107	0%	117	23.1%	4	100%	benign(0.424)	tolerated(0.15)	neutral(0.379)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRB	5787	genome.wustl.edu	37	12	70983962	70983962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001109754.1	-1	reviewed	p.S611Y	1.000	261	0%	210	34.8%	0	-	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ZFC3H1	196441	genome.wustl.edu	37	12	72007207	72007207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144982.4	-1	validated	p.F1845L	1.000	55	0%	50	24%	3	66.6%	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72038680	72038680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144982.4	-1	validated	p.S419L	1.000	125	0%	82	29.3%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72057069	72057069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144982.4	-1	validated	p.E108K	1.000	88	0%	98	36.7%	4	0%	unknown(0)	deleterious(0)	-	NULL
RAB21	23011	genome.wustl.edu	37	12	72176427	72176427	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014999.2	+1	provisional	p.D175A	1.000	112	0%	90	20%	49	42.8%	benign(0.013)	tolerated(0.75)	neutral(0.002)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
TBC1D15	64786	genome.wustl.edu	37	12	72278719	72278719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022771.4	+1	reviewed	p.V158I	1.000	155	0%	129	24.8%	6	33.3%	possibly_damaging(0.808)	tolerated(0.37)	neutral(0.323)	NULL
CAPS2	84698	genome.wustl.edu	37	12	75683544	75683544	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032606.3	-1	validated	p.E437*	1.000	168	0%	168	22%	0	-	-	-	-	NULL
BBS10	79738	genome.wustl.edu	37	12	76740692	76740692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024685.3	-1	reviewed	p.S358L	0.002	169	0%	140	28.6%	5	60%	possibly_damaging(0.448)	tolerated(0.12)	neutral(0.407)	superfamily_GroEL-ATPase
OSBPL8	114882	genome.wustl.edu	37	12	76796476	76796476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020841.4	-1	reviewed	p.S120Y	1.000	94	0%	50	26%	4	25%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
NAV3	89795	genome.wustl.edu	37	12	78515778	78515778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014903.4	+1	validated	p.K1270E	1.000	62	0%	59	35.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NAV3	89795	genome.wustl.edu	37	12	78569092	78569092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014903.4	+1	validated	p.R1663H	1.000	113	0%	75	32%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
NAV3	89795	genome.wustl.edu	37	12	78593174	78593174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014903.4	+1	validated	p.R2171Q	1.000	167	0%	189	30.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
NAV3	89795	genome.wustl.edu	37	12	78598824	78598824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014903.4	+1	validated	p.R2293Q	1.000	93	0%	92	26.1%	0	-	probably_damaging(1)	tolerated(0.36)	deleterious(0.520)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80623122	80623122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343203.1	+1	model	p.R133L	0.115	107	0%	123	29.3%	0	-	benign(0.014)	tolerated(0.45)	neutral(0.013)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80651695	80651695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343203.1	+1	model	p.R542I	1.000	96	0%	83	20.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80749626	80749626	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343203.1	+1	model	p.E1799*	1.000	448	0%	368	27.7%	0	-	-	-	-	NULL
MYF6	4618	genome.wustl.edu	37	12	81101837	81101837	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002469.2	+1	reviewed	p.F113	1.000	60	0%	50	24%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
MYF5	4617	genome.wustl.edu	37	12	81111052	81111052	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005593.2	+1	validated	p.W70*	1.000	30	0%	32	34.4%	0	-	-	-	-	HMMPfam_Basic,HMMSmart_BASIC
LIN7A	8825	genome.wustl.edu	37	12	81239672	81239672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004664.2	-1	validated	p.R107Q	1.000	122	0%	133	27.1%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_PDZ domain-like
ACSS3	79611	genome.wustl.edu	37	12	81472159	81472159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024560.2	+1	validated	p.Y87C	1.000	35	0%	30	23.3%	0	-	possibly_damaging(0.677)	tolerated(0.07)	deleterious(0.560)	superfamily_Acetyl-CoA synthetase-like
PPFIA2	8499	genome.wustl.edu	37	12	81768531	81768531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003625.2	-1	reviewed	p.R383I	1.000	108	0%	102	28.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	82147930	82147930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003625.2	-1	reviewed	p.G24V	1.000	77	0%	68	10.3%	0	-	benign(0.148)	deleterious(0.02)	neutral(0.396)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	82147967	82147967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003625.2	-1	reviewed	p.D12Y	1.000	59	0%	69	23.2%	0	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
CCDC59	29080	genome.wustl.edu	37	12	82746941	82746941	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014167.4	-1	validated	p.E239*	0.998	181	0%	147	32.7%	49	46.9%	-	-	-	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85255473	85255473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182767.4	-1	validated	p.R711W	1.000	342	0%	231	33.3%	1	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85279215	85279215	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182767.4	-1	validated	p.T191	0.982	112	0%	132	27.3%	0	-	-	-	-	HMMPfam_SNF
LRRIQ1	84125	genome.wustl.edu	37	12	85449454	85449454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079910.1	+1	validated	p.K295E	0.996	123	0%	105	24.8%	0	-	probably_damaging(0.98)	tolerated(0.51)	neutral(0.433)	HMMSmart_SM00015,superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85449901	85449901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079910.1	+1	validated	p.E444K	0.000	209	0%	213	30%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85450372	85450372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079910.1	+1	validated	p.D601Y	0.022	125	0%	166	33.1%	0	-	benign(0)	deleterious(0)	neutral(0.445)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85450453	85450453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079910.1	+1	validated	p.V628I	0.000	136	0%	141	27.7%	0	-	benign(0.047)	tolerated(0.31)	neutral(0.030)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85547849	85547849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079910.1	+1	validated	p.S1566L	0.991	41	0%	52	25%	0	-	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
ALX1	8092	genome.wustl.edu	37	12	85677620	85677620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006982.2	+1	reviewed	p.A166V	1.000	95	0%	79	36.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
RASSF9	9182	genome.wustl.edu	37	12	86198958	86198958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005447.3	-1	reviewed	p.R277Q	0.694	313	0%	228	34.2%	0	-	benign(0.016)	tolerated(0.34)	neutral(0.024)	NULL
NTS	4922	genome.wustl.edu	37	12	86272267	86272267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006183.3	+1	reviewed	p.D94Y	0.999	162	0%	101	26.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pro-NT_NN
MGAT4C	25834	genome.wustl.edu	37	12	86373807	86373807	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013244.3	-1	validated	p.F233V	1.000	95	1.1%	81	27.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Glyco_transf_54
CEP290	80184	genome.wustl.edu	37	12	88487655	88487655	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025114.3	-1	reviewed	p.L1067F	1.000	58	0%	48	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP290	80184	genome.wustl.edu	37	12	88508238	88508238	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025114.3	-1	reviewed	p.E671*	1.000	5	0.000	10	0.500	0	-	-	-	-	NULL
CEP290	80184	genome.wustl.edu	37	12	88514815	88514815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025114.3	-1	reviewed	p.E440*	1.000	137	0%	92	35.9%	0	-	-	-	-	NULL
TMTC3	160418	genome.wustl.edu	37	12	88588648	88588648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181783.3	+1	reviewed	p.R656Q	1.000	131	0%	100	32%	13	38.4%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_Prenyl_trans
ATP2B1	490	genome.wustl.edu	37	12	90004246	90004246	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001682.2	-1	reviewed	p.R763*	1.000	389	0%	264	26.9%	5	0%	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81665
C12orf12	196477	genome.wustl.edu	37	12	91347494	91347494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152638.2	-1	predicted	p.E342D	0.002	152	0%	152	36.2%	0	-	unknown(0)	tolerated(0.61)	-	NULL
EPYC	1833	genome.wustl.edu	37	12	91366662	91366662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004950.4	-1	reviewed	p.A146T	0.997	127	0%	117	22.2%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00013,superfamily_L domain-like
KERA	11081	genome.wustl.edu	37	12	91445187	91445187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007035.3	-1	reviewed	p.I332T	1.000	108	0%	77	31.2%	0	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	superfamily_SSF52058
KERA	11081	genome.wustl.edu	37	12	91449250	91449250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007035.3	-1	reviewed	p.S270L	1.000	229	0%	196	29.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SSF52058
DCN	1634	genome.wustl.edu	37	12	91572143	91572143	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001920.3	-1	reviewed	p.R63*	1.000	195	0%	149	13.4%	168	0%	-	-	-	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like
PLEKHG7	440107	genome.wustl.edu	37	12	93150097	93150097	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004330.2	+1	validated	p.E210	0.999	71	0%	63	20.6%	0	-	-	-	-	superfamily_SSF50729
EEA1	8411	genome.wustl.edu	37	12	93245035	93245035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003566.3	-1	validated	p.R217I	1.000	68	0%	56	25%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PLXNC1	10154	genome.wustl.edu	37	12	94562965	94562965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005761.1	+1	provisional	p.A367T	0.746	227	0%	167	28.7%	1	0%	benign(0.007)	tolerated(0.62)	neutral(0.004)	superfamily_Sema
PLXNC1	10154	genome.wustl.edu	37	12	94653401	94653401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005761.1	+1	provisional	p.D1048N	0.848	100	0%	99	21.2%	5	0%	benign(0.004)	tolerated(0.66)	neutral(0.003)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
PLXNC1	10154	genome.wustl.edu	37	12	94676114	94676114	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005761.1	+1	provisional	p.I1272	0.959	119	0%	109	23.9%	0	-	-	-	-	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
PLXNC1	10154	genome.wustl.edu	37	12	94692481	94692481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005761.1	+1	provisional	p.A1383D	1.000	117	0%	90	24.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
CCDC41	51134	genome.wustl.edu	37	12	94772672	94772672	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042399.1	-1	validated	p.A232	0.980	766	0%	579	26.9%	1	0%	-	-	-	NULL
TMCC3	57458	genome.wustl.edu	37	12	94965346	94965346	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020698.2	-1	validated	p.A433	0.976	297	0%	225	31.6%	10	50%	-	-	-	HMMPfam_Tmemb_cc2
NR2C1	7181	genome.wustl.edu	37	12	95452103	95452103	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003297.2	-1	reviewed	p.F176C	1.000	110	0%	110	29.1%	7	85.7%	possibly_damaging(0.753)	tolerated(0.2)	neutral(0.326)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FGD6	55785	genome.wustl.edu	37	12	95486580	95486580	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018351.3	-1	validated	p.S1214	0.830	78	0%	59	32.2%	6	33.3%	-	-	-	HMMSmart_SM00064
FGD6	55785	genome.wustl.edu	37	12	95603558	95603558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018351.3	-1	validated	p.R501I	0.994	267	0%	310	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AMDHD1	144193	genome.wustl.edu	37	12	96354228	96354228	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152435.2	+1	validated	p.K214Q	0.024	106	0%	106	25.5%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
HAL	3034	genome.wustl.edu	37	12	96387586	96387586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002108.2	-1	reviewed	p.K172T	1.000	181	0%	136	12.5%	0	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMPfam_PAL,superfamily_L-Aspartase-like
C12orf63	374467	genome.wustl.edu	37	12	97084963	97084963	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198520.2	+1	validated	p.E472*	1.000	167	0%	160	30.6%	0	-	-	-	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97093771	97093771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198520.2	+1	validated	p.R550I	0.408	153	0%	214	50.5%	0	-	unknown(0)	deleterious(0.01)	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97133791	97133791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198520.2	+1	validated	p.K766N	0.989	264	0%	188	26.1%	0	-	unknown(0)	deleterious(0.03)	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97150280	97150280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198520.2	+1	validated	p.F1054V	0.000	44	0%	57	40.4%	0	-	unknown(0)	tolerated(0.51)	-	NULL
NEDD1	121441	genome.wustl.edu	37	12	97345796	97345796	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135175.1	+1	validated	p.R657*	0.996	117	0.9%	88	30.7%	16	31.2%	-	-	-	NULL
LOC121456	121456	genome.wustl.edu	37	12	98849996	98849996	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_016411.2	-1	model	NULL	1.000	49	0%	51	29.4%	0	-	-	-	-	-
TMPO	7112	genome.wustl.edu	37	12	98927110	98927110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003276.2	+1	reviewed	p.A359T	0.378	111	0%	90	27.8%	24	37.5%	benign(0.008)	tolerated(0.14)	neutral(0.249)	NULL
TMPO	7112	genome.wustl.edu	37	12	98927478	98927478	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003276.2	+1	reviewed	p.Q481	0.997	91	0%	92	30.4%	24	37.5%	-	-	-	NULL
SLC25A3	5250	genome.wustl.edu	37	12	98991811	98991811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005888.3	+1	reviewed	p.E154K	1.000	117	0%	68	29.4%	540	43.3%	probably_damaging(0.988)	tolerated(0.1)	deleterious(0.724)	superfamily_Mitochondrial carrier
IKBIP	121457	genome.wustl.edu	37	12	99008081	99008081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201612.1	-1	provisional	p.S112Y	1.000	72	0%	59	30.5%	10	40%	benign(0.163)	tolerated(0.15)	neutral(0.256)	NULL
IKBIP	121457	genome.wustl.edu	37	12	99019780	99019780	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153687.2	-1	provisional	p.Y354*	0.548	88	0%	85	16.5%	7	0%	-	-	-	NULL
APAF1	317	genome.wustl.edu	37	12	99064761	99064761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181861.1	+1	reviewed	p.A502D	1.000	146	0%	116	21.6%	1	100%	benign(0.001)	tolerated(0.44)	neutral(0.013)	superfamily_WD40 repeat-like
ANKS1B	56899	genome.wustl.edu	37	12	99129342	99129342	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152788.3	-1	validated	p.F1248C	0.010	80	0%	66	34.8%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ANKS1B	56899	genome.wustl.edu	37	12	99837458	99837458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152788.3	-1	validated	p.R523Q	1.000	127	0.8%	129	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKS1B	56899	genome.wustl.edu	37	12	100048962	100048962	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152788.3	-1	validated	p.S385	1.000	139	0%	89	21.3%	0	-	-	-	-	NULL
SCYL2	55681	genome.wustl.edu	37	12	100685392	100685392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017988.4	+1	provisional	p.R97*	1.000	228	0%	183	10.4%	10	20%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
GAS2L3	283431	genome.wustl.edu	37	12	100994187	100994187	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174942.1	+1	provisional	p.S16R	0.986	271	0%	218	26.6%	3	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GAS2L3	283431	genome.wustl.edu	37	12	101012322	101012322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174942.1	+1	provisional	p.S202I	0.842	85	0%	97	28.9%	0	-	benign(0.002)	tolerated(0.07)	neutral(0.319)	NULL
ANO4	121601	genome.wustl.edu	37	12	101333128	101333128	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178826.3	+1	validated	p.E31*	1.000	198	0%	138	33.3%	0	-	-	-	-	NULL
ANO4	121601	genome.wustl.edu	37	12	101336239	101336239	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178826.3	+1	validated	p.S93A	1.000	316	0%	257	29.6%	0	-	benign(0.023)	tolerated(0.3)	neutral(0.030)	NULL
ANO4	121601	genome.wustl.edu	37	12	101430881	101430881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178826.3	+1	validated	p.R249C	1.000	355	0%	254	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANO4	121601	genome.wustl.edu	37	12	101433760	101433760	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178826.3	+1	validated	p.R274*	0.994	300	0%	237	31.2%	0	-	-	-	-	NULL
ANO4	121601	genome.wustl.edu	37	12	101490408	101490408	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178826.3	+1	validated	p.I576	0.080	103	0%	70	30%	0	-	-	-	-	NULL
ANO4	121601	genome.wustl.edu	37	12	101510498	101510498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178826.3	+1	validated	p.R796Q	0.989	265	0%	172	29.1%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_DUF590
SLC5A8	160728	genome.wustl.edu	37	12	101560273	101560273	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145913.3	-1	validated	p.R509	1.000	88	0%	65	38.5%	0	-	-	-	-	NULL
SLC5A8	160728	genome.wustl.edu	37	12	101576648	101576648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145913.3	-1	validated	p.E366D	1.000	214	0%	136	35.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SSF
SLC5A8	160728	genome.wustl.edu	37	12	101603367	101603367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145913.3	-1	validated	p.I87S	0.972	32	0%	21	28.6%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_SSF
UTP20	27340	genome.wustl.edu	37	12	101705858	101705858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014503.2	+1	validated	p.D786Y	0.804	169	0%	154	37%	1	100%	benign(0.427)	deleterious(0.01)	deleterious(0.544)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101705963	101705963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014503.2	+1	validated	p.R821G	0.999	209	0.5%	200	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
MYBPC1	4604	genome.wustl.edu	37	12	102056297	102056297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002465.2	+1	validated	p.M732V	0.997	206	0%	181	28.7%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	superfamily_Fibronectin type III
GNPTAB	79158	genome.wustl.edu	37	12	102164827	102164827	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024312.4	-1	reviewed	p.E294*	1.000	322	0.3%	237	51.9%	1	0%	-	-	-	NULL
ENSG00000238940	0	genome.wustl.edu	37	12	102183597	102183597	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000459085	+1	novel	NULL	0.980	114	0%	122	36.1%	0	-	-	-	-	-
GNPTAB	79158	genome.wustl.edu	37	12	102183810	102183810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024312.4	-1	reviewed	p.V77I	1.000	449	0%	335	24.5%	3	0%	benign(0.32)	tolerated(0.33)	neutral(0.124)	NULL
NUP37	79023	genome.wustl.edu	37	12	102505968	102505968	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024057.2	-1	provisional	p.R67*	0.990	197	0%	186	29%	23	17.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
C12orf42	374470	genome.wustl.edu	37	12	103700003	103700003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099336.1	-1	validated	p.F127S	0.000	91	0%	102	31.4%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
C12orf42	374470	genome.wustl.edu	37	12	103762757	103762757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099336.1	-1	validated	p.R56I	0.005	54	0%	48	18.8%	0	-	possibly_damaging(0.923)	tolerated(0.2)	neutral(0.421)	NULL
STAB2	55576	genome.wustl.edu	37	12	104030995	104030995	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017564.9	+1	reviewed	p.G230	0.019	330	0%	242	31.4%	0	-	-	-	-	HMMSmart_EGF
STAB2	55576	genome.wustl.edu	37	12	104033909	104033909	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017564.9	+1	reviewed	p.C305	0.998	221	0%	151	30.5%	0	-	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104131549	104131549	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017564.9	+1	reviewed	p.F1896	0.004	180	0%	150	36%	0	-	-	-	-	NULL
GLT8D2	83468	genome.wustl.edu	37	12	104383347	104383347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031302.3	-1	provisional	p.P297S	1.000	349	0%	254	33.9%	28	21.4%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Glyco_transf_8,superfamily_SSF53448
GLT8D2	83468	genome.wustl.edu	37	12	104408855	104408855	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031302.3	-1	provisional	p.I16	0.688	76	0%	84	31%	15	6.6%	-	-	-	NULL
HCFC2	29915	genome.wustl.edu	37	12	104490143	104490143	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013320.2	+1	reviewed	p.E558*	1.000	122	0%	96	35.4%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
EID3	493861	genome.wustl.edu	37	12	104697977	104697977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008394.1	+1	provisional	p.D89N	0.427	116	0%	109	30.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nse4
KIAA1033	23325	genome.wustl.edu	37	12	105543490	105543490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015275.1	+1	validated	p.R871Q	1.000	309	0%	226	56.6%	1	0%	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	NULL
NUAK1	9891	genome.wustl.edu	37	12	106464624	106464624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014840.2	-1	validated	p.D254N	1.000	97	0%	81	27.2%	2	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC100130905	100130905	genome.wustl.edu	37	12	106632617	106632617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001715433.1	+1	model	p.E63D	0.000	45	0%	44	25%	69	26%	-	-	-	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106729809	106729809	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152772.1	+1	provisional	e7-1	1.000	158	0%	154	29.9%	0	-	-	-	-	-
RFX4	5992	genome.wustl.edu	37	12	107002658	107002658	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213594.1	+1	reviewed	p.E43*	1.000	210	0%	186	32.3%	0	-	-	-	-	NULL
RFX4	5992	genome.wustl.edu	37	12	107078653	107078653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032491.4	+1	reviewed	p.S21L	0.003	56	0%	53	39.6%	0	-	benign(0.026)	deleterious(0.04)	neutral(0.350)	NULL
C12orf23	90488	genome.wustl.edu	37	12	107365024	107365024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152261.2	+1	validated	p.K69T	1.000	211	0%	200	22%	13	38.4%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
BTBD11	121551	genome.wustl.edu	37	12	108004016	108004016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001018072.1	+1	validated	p.E565K	1.000	144	0%	128	37.5%	0	-	probably_damaging(0.979)	tolerated(0.81)	neutral(0.422)	NULL
WSCD2	9671	genome.wustl.edu	37	12	108620797	108620797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014653.2	+1	validated	p.A279T	0.958	101	0%	109	28.4%	0	-	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_WSC,HMMSmart_SM00321
WSCD2	9671	genome.wustl.edu	37	12	108620938	108620938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014653.2	+1	validated	p.Q326K	1.000	102	0%	92	31.5%	0	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CMKLR1	1240	genome.wustl.edu	37	12	108685787	108685787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142343.1	-1	validated	p.F318S	1.000	117	0%	128	26.6%	8	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Family A G protein-coupled receptor-like
FICD	11153	genome.wustl.edu	37	12	108912415	108912415	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007076.2	+1	validated	p.R180	0.998	126	0%	95	32.6%	4	75%	-	-	-	superfamily_SSF48452
SELPLG	6404	genome.wustl.edu	37	12	109017291	109017291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003006.3	-1	reviewed	p.E255*	0.000	77	0%	78	30.8%	15	0%	-	-	-	NULL
CORO1C	23603	genome.wustl.edu	37	12	109095038	109095038	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014325.2	-1	reviewed	p.K19N	1.000	212	0%	190	32.6%	25	20%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_DUF1899
DAO	1610	genome.wustl.edu	37	12	109278859	109278859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001917.4	+1	reviewed	p.V26A	0.000	89	0%	103	30.1%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_DAO,superfamily_Nucleotide-binding domain
USP30	84749	genome.wustl.edu	37	12	109522840	109522840	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032663.3	+1	validated	p.A417	0.000	523	0%	303	37%	5	60%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ACACB	32	genome.wustl.edu	37	12	109605782	109605782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001093.3	+1	reviewed	p.E290K	1.000	97	0%	98	35.7%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain
ACACB	32	genome.wustl.edu	37	12	109678975	109678975	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001093.3	+1	reviewed	p.R1637	1.000	192	0%	223	34.1%	0	-	-	-	-	HMMPfam_ACC_central
ACACB	32	genome.wustl.edu	37	12	109687841	109687841	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001093.3	+1	reviewed	p.L1908	0.999	166	0%	145	29.7%	1	0%	-	-	-	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
ACACB	32	genome.wustl.edu	37	12	109692070	109692070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001093.3	+1	reviewed	p.E2033K	1.000	442	0%	372	31.2%	0	-	benign(0.22)	tolerated(0.28)	neutral(0.053)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
FOXN4	121643	genome.wustl.edu	37	12	109723189	109723189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213596.2	-1	validated	p.R274H	1.000	69	0%	92	39.1%	0	-	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
KCTD10	83892	genome.wustl.edu	37	12	109907527	109907527	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031954.3	-1	provisional	p.M4L	1.000	50	0%	51	19.6%	4	50%	unknown(0)	tolerated(1)	-	NULL
C12orf34	84915	genome.wustl.edu	37	12	110205823	110205823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032829.2	+1	validated	p.A30V	0.953	24	0%	15	26.7%	2	100%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
GLTP	51228	genome.wustl.edu	37	12	110295392	110295392	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016433.3	-1	reviewed	p.E79*	1.000	61	0%	74	35.1%	33	27.2%	-	-	-	HMMPfam_GLTP,superfamily_Glycolipid transfer protein GLTP
FAM216A	29902	genome.wustl.edu	37	12	110925735	110925735	+	Silent	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013300.2	+1	validated	p.L230	0.989	68	0%	57	38.6%	5	40%	-	-	-	NULL
PPP1CC	5501	genome.wustl.edu	37	12	111157950	111157950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000340766	-1	known	p.L335I	1.000	20	0.000	8	0.500	204	42.1%	unknown(0)	deleterious(0)	-	NULL
BRAP	8315	genome.wustl.edu	37	12	112117032	112117032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006768.3	-1	reviewed	p.E186K	1.000	60	0%	57	19.3%	13	38.4%	benign(0.005)	tolerated(0.55)	neutral(0.007)	HMMPfam_BRAP2
RPL6	6128	genome.wustl.edu	37	12	112846052	112846052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000970.3	-1	reviewed	p.R110C	1.000	144	0%	154	33.1%	1338	62.1%	benign(0.041)	deleterious(0)	neutral(0.447)	NULL
RPH3A	22895	genome.wustl.edu	37	12	113306258	113306258	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143854.1	+1	validated	p.W156*	1.000	161	0%	97	26.8%	0	-	-	-	-	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger
OAS1	4938	genome.wustl.edu	37	12	113344933	113344933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001032409.1	+1	reviewed	p.I30T	0.086	305	0%	311	31.2%	8	0%	benign(0.221)	deleterious(0.02)	neutral(0.405)	superfamily_Nucleotidyltransferase
OAS1	4938	genome.wustl.edu	37	12	113348944	113348944	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001032409.1	+1	reviewed	p.F186	1.000	294	0%	285	30.2%	31	9.6%	benign(0.009)	tolerated(0.08)	neutral(0.300)	HMMPfam_OAS1_C,superfamily_Nucleotidyltransferase
OAS2	4939	genome.wustl.edu	37	12	113442841	113442841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016817.2	+1	reviewed	p.R428W	0.000	135	0.7%	170	29.4%	7	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
OAS2	4939	genome.wustl.edu	37	12	113442958	113442958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016817.2	+1	reviewed	p.F467V	0.363	167	0%	169	32.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
OAS2	4939	genome.wustl.edu	37	12	113446914	113446914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016817.2	+1	reviewed	p.E640K	0.024	444	0%	410	28.8%	8	0%	possibly_damaging(0.712)	deleterious(0)	deleterious(0.702)	PatternScan_25A_SYNTH_2,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
RASAL1	8437	genome.wustl.edu	37	12	113557030	113557030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004658.1	-1	reviewed	p.E182G	1.000	129	0%	119	34.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TPCN1	53373	genome.wustl.edu	37	12	113704000	113704000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143819.1	+1	validated	p.D157N	1.000	120	0.8%	114	36.8%	3	66.6%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
SDS	10993	genome.wustl.edu	37	12	113835050	113835050	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006843.2	-1	reviewed	p.I191	0.996	24	0%	36	25%	2	0%	-	-	-	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
LOC100287933	100287933	genome.wustl.edu	37	12	113906985	113906985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343216.1	+1	model	p.E410K	0.998	57	0%	32	34.4%	0	-	-	-	-	NULL
TBX5	6910	genome.wustl.edu	37	12	114793348	114793348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000192.3	-1	reviewed	p.D516N	1.000	85	0%	87	36.8%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
TBX5	6910	genome.wustl.edu	37	12	114793419	114793419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000192.3	-1	reviewed	p.G492D	1.000	75	0%	81	27.2%	0	-	benign(0.039)	deleterious(0.05)	neutral(0.347)	NULL
TBX5	6910	genome.wustl.edu	37	12	114841627	114841627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000192.3	-1	reviewed	p.S26L	0.001	56	0%	53	34%	0	-	benign(0.014)	tolerated(0.4)	neutral(0.017)	NULL
MED13L	23389	genome.wustl.edu	37	12	116429043	116429043	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015335.3	-1	validated	p.S1239*	0.998	131	0%	157	33.1%	5	60%	-	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116446598	116446598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015335.3	-1	validated	p.M540I	0.998	69	0%	88	19.3%	3	0%	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
MED13L	23389	genome.wustl.edu	37	12	116534535	116534535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015335.3	-1	validated	p.V140I	1.000	176	0%	135	28.9%	0	-	possibly_damaging(0.792)	tolerated(0.21)	neutral(0.341)	NULL
FBXW8	26259	genome.wustl.edu	37	12	117365862	117365862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153348.2	+1	reviewed	p.Q118P	0.992	166	0%	110	24.5%	2	0%	possibly_damaging(0.842)	tolerated(0.07)	deleterious(0.641)	HMMPfam_F-box,superfamily_F-box domain
NOS1	4842	genome.wustl.edu	37	12	117665323	117665323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000620.2	-1	reviewed	p.P1177S	1.000	61	0%	52	32.7%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_FAD_binding_1,superfamily_Riboflavin synthase domain-like
KSR2	283455	genome.wustl.edu	37	12	117968755	117968755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173598.4	-1	validated	p.S569L	0.999	162	0%	99	34.3%	0	-	possibly_damaging(0.915)	tolerated(0.06)	deleterious(0.689)	NULL
KSR2	283455	genome.wustl.edu	37	12	118298127	118298127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173598.4	-1	validated	p.R68Q	1.000	47	0%	66	28.8%	0	-	possibly_damaging(0.516)	tolerated(0.47)	neutral(0.184)	NULL
SUDS3	64426	genome.wustl.edu	37	12	118829009	118829009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022491.2	+1	validated	p.K147E	1.000	216	0%	172	21.5%	13	53.8%	probably_damaging(0.996)	tolerated(0.28)	deleterious(0.493)	HMMPfam_Sds3
CIT	11113	genome.wustl.edu	37	12	120139679	120139679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007174.1	-1	validated	p.D1755N	1.000	141	0%	147	29.3%	8	62.5%	benign(0.117)	tolerated(0.07)	neutral(0.329)	HMMPfam_CNH,HMMSmart_SM00036
CIT	11113	genome.wustl.edu	37	12	120172963	120172963	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007174.1	-1	validated	e23+2	1.000	152	0%	118	31.4%	0	-	-	-	-	-
CIT	11113	genome.wustl.edu	37	12	120204980	120204980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007174.1	-1	validated	p.E697K	1.000	314	0%	279	32.3%	0	-	probably_damaging(0.998)	tolerated(0.54)	deleterious(0.482)	NULL
CIT	11113	genome.wustl.edu	37	12	120241120	120241120	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007174.1	-1	validated	p.S395	1.000	170	0.6%	151	29.8%	0	-	-	-	-	HMMSmart_SM00133,HMMPfam_Pkinase_C
CCDC64	92558	genome.wustl.edu	37	12	120509561	120509561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207311.2	+1	validated	p.E349K	0.999	41	0%	41	34.1%	7	14.2%	possibly_damaging(0.553)	tolerated(0.17)	neutral(0.247)	NULL
RNF10	9921	genome.wustl.edu	37	12	121014433	121014433	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014868.4	+1	reviewed	p.K800	1.000	248	0%	195	29.7%	109	38.5%	-	-	-	NULL
CABP1	9478	genome.wustl.edu	37	12	121088470	121088470	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031205.2	+1	reviewed	p.R10	1.000	104	0%	90	27.8%	1	0%	-	-	-	NULL
CABP1	9478	genome.wustl.edu	37	12	121094058	121094058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031205.2	+1	reviewed	p.A70T	1.000	19	0%	28	25%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
SPPL3	121665	genome.wustl.edu	37	12	121248644	121248644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139015.3	-1	validated	p.I23M	1.000	227	0%	234	34.6%	12	66.6%	probably_damaging(0.999)	tolerated(0.36)	deleterious(0.510)	NULL
OASL	8638	genome.wustl.edu	37	12	121476745	121476745	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003733.2	-1	validated	p.T10	0.007	17	0%	41	24.4%	0	-	unknown(0)	-	-	superfamily_Nucleotidyltransferase
P2RX7	5027	genome.wustl.edu	37	12	121603214	121603214	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002562.4	+1	reviewed	p.I196	0.553	111	0%	92	25%	0	-	-	-	-	HMMPfam_P2X_receptor
P2RX7	5027	genome.wustl.edu	37	12	121613248	121613248	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002562.4	+1	reviewed	p.F313	0.976	182	0%	129	34.9%	0	-	-	-	-	HMMPfam_P2X_receptor
RNF34	80196	genome.wustl.edu	37	12	121858093	121858093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194271.1	+1	reviewed	p.D229N	0.044	41	0%	36	22.2%	30	33.3%	possibly_damaging(0.818)	tolerated(0.23)	neutral(0.350)	NULL
KDM2B	84678	genome.wustl.edu	37	12	121970752	121970752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032590.4	-1	reviewed	p.R297I	1.000	33	0%	36	33.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
TMEM120B	144404	genome.wustl.edu	37	12	122199565	122199565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080825.2	+1	validated	p.E158K	0.999	33	0%	29	24.1%	5	60%	benign(0.268)	tolerated(0.77)	neutral(0.030)	HMMPfam_TMPIT
PSMD9	5715	genome.wustl.edu	37	12	122337551	122337551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002813.4	+1	reviewed	p.D85Y	1.000	15	0%	26	26.9%	79	29.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR66	144406	genome.wustl.edu	37	12	122380855	122380855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144668.4	+1	validated	p.E389K	0.001	188	0%	206	37.4%	9	77.7%	benign(0.119)	tolerated(0.71)	neutral(0.011)	superfamily_WD40 repeat-like
WDR66	144406	genome.wustl.edu	37	12	122396425	122396425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144668.4	+1	validated	p.E660K	0.902	403	0%	433	35.1%	4	75%	benign(0.172)	tolerated(0.3)	neutral(0.044)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR66	144406	genome.wustl.edu	37	12	122441593	122441593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144668.4	+1	validated	p.E1125K	0.997	73	0%	70	11.4%	1	0%	possibly_damaging(0.736)	tolerated(0.74)	neutral(0.271)	NULL
LRRC43	254050	genome.wustl.edu	37	12	122677364	122677364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098519.1	+1	validated	p.E388K	0.000	92	0%	77	26%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
VPS33A	65082	genome.wustl.edu	37	12	122745892	122745892	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022916.4	-1	validated	p.S133	1.000	200	0%	252	32.9%	12	25%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
RSRC2	65117	genome.wustl.edu	37	12	123003589	123003589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198261.2	-1	validated	p.F6L	1.000	156	0%	160	30%	1	100%	unknown(0)	deleterious(0)	-	NULL
ABCB9	23457	genome.wustl.edu	37	12	123430699	123430699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019625.3	-1	reviewed	p.M375T	1.000	31	0%	15	46.7%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
MPHOSPH9	10198	genome.wustl.edu	37	12	123648553	123648553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022782.2	-1	validated	p.S799L	0.103	195	0%	191	29.3%	4	25%	possibly_damaging(0.832)	tolerated(0.12)	deleterious(0.578)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123801827	123801827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018183.3	-1	validated	p.R958Q	1.000	123	0%	85	22.4%	11	36.3%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123805383	123805383	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018183.3	-1	validated	p.K784T	1.000	224	0%	177	28.2%	7	57.1%	probably_damaging(0.98)	tolerated(0.34)	neutral(0.447)	NULL
SETD8	387893	genome.wustl.edu	37	12	123892122	123892122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020382.3	+1	validated	p.D311Y	1.000	118	0%	107	20.6%	17	23.5%	benign(0.392)	deleterious(0.02)	deleterious(0.508)	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
RILPL2	196383	genome.wustl.edu	37	12	123907595	123907595	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145058.1	-1	provisional	p.K201Q	0.732	38	0%	76	43.4%	23	21.7%	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
TMED2	10959	genome.wustl.edu	37	12	124071385	124071385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006815.3	+1	validated	p.K91R	1.000	76	0%	102	22.5%	258	44.1%	benign(0.046)	tolerated(0.56)	neutral(0.009)	HMMPfam_EMP24_GP25L,superfamily_Supernatant protein factor (SPF) C-terminal domain
DDX55	57696	genome.wustl.edu	37	12	124102348	124102348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020936.1	+1	reviewed	p.G365R	0.001	60	0%	57	24.6%	4	0%	benign(0)	tolerated(0.22)	neutral(0.042)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124268577	124268577	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207437.3	+1	validated	p.P300	0.000	130	0%	95	32.6%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH10	196385	genome.wustl.edu	37	12	124281333	124281333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207437.3	+1	validated	p.R588Q	0.235	246	0%	275	62.2%	0	-	possibly_damaging(0.671)	tolerated(0.59)	neutral(0.242)	HMMPfam_DHC_N1
DNAH10	196385	genome.wustl.edu	37	12	124298198	124298198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000447853	+1	known	p.R1093H	0.000	219	0%	238	13.9%	0	-	-	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124323215	124323215	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207437.3	+1	validated	p.C1587	1.000	215	0%	170	30%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH10	196385	genome.wustl.edu	37	12	124393865	124393865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207437.3	+1	validated	p.M3173I	1.000	6	0.000	13	0.385	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124399093	124399093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207437.3	+1	validated	p.S3406R	1.000	8	0.000	16	0.375	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124399487	124399487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207437.3	+1	validated	p.D3437N	1.000	13	0%	14	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124840004	124840004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006312.3	-1	validated	p.E1126K	1.000	11	0%	11	45.5%	58	27.5%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124968163	124968163	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006312.3	-1	validated	p.A130	0.000	19	0%	19	36.8%	21	42.8%	-	-	-	NULL
UBC	7316	genome.wustl.edu	37	12	125396291	125396291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021009.4	-1	validated	p.H676R	1.000	214	0%	188	28.2%	1327	33.4%	possibly_damaging(0.881)	deleterious(0)	deleterious(0.788)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
AACS	65985	genome.wustl.edu	37	12	125603198	125603198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023928.3	+1	validated	p.M336I	1.000	11	0%	18	66.7%	3	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
TMEM132B	114795	genome.wustl.edu	37	12	125834587	125834587	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052907.2	+1	provisional	p.T214	1.000	103	0%	102	37.3%	0	-	-	-	-	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126139041	126139041	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052907.2	+1	provisional	p.E1008*	1.000	134	0%	126	27%	0	-	-	-	-	NULL
TMEM132D	121256	genome.wustl.edu	37	12	129566392	129566392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133448.2	-1	validated	p.D612G	0.995	68	0%	60	20%	0	-	benign(0.31)	tolerated(0.09)	neutral(0.393)	NULL
FZD10	11211	genome.wustl.edu	37	12	130649008	130649008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007197.2	+1	reviewed	p.K507N	0.133	18	0%	20	35%	24	70.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Frizzled
PIWIL1	9271	genome.wustl.edu	37	12	130832683	130832683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004764.3	+1	reviewed	p.R230Q	1.000	114	0%	83	30.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PAZ domain
RIMBP2	23504	genome.wustl.edu	37	12	130884250	130884250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015347.4	-1	validated	p.T1036A	0.001	223	0%	238	32.4%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	superfamily_SH3-domain
STX2	2054	genome.wustl.edu	37	12	131276459	131276459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001980.2	-1	reviewed	p.T284A	1.000	92	0%	60	30%	5	20%	benign(0.059)	tolerated(0.54)	neutral(0.011)	NULL
STX2	2054	genome.wustl.edu	37	12	131297566	131297566	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194356.1	-1	reviewed	p.E72D	0.938	200	0%	97	26.8%	0	-	benign(0.01)	tolerated(0.6)	neutral(0.005)	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins
SFSWAP	6433	genome.wustl.edu	37	12	132204042	132204042	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004592.2	+1	reviewed	p.F188	0.984	88	0%	85	60%	10	90%	-	-	-	superfamily_Surp module (SWAP domain Pfam 01805)
SFSWAP	6433	genome.wustl.edu	37	12	132212924	132212924	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004592.2	+1	reviewed	p.N344	0.000	112	0%	87	40.2%	10	50%	-	-	-	NULL
ULK1	8408	genome.wustl.edu	37	12	132394807	132394807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003565.2	+1	validated	p.F273V	1.000	36	0%	28	32.1%	10	10%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EP400	57634	genome.wustl.edu	37	12	132516567	132516567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015409.3	+1	validated	p.T1941A	0.005	102	0%	117	31.6%	12	58.3%	unknown(0)	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
EP400	57634	genome.wustl.edu	37	12	132516678	132516678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015409.3	+1	validated	p.D1978Y	1.000	105	0%	105	30.5%	5	60%	unknown(0)	-	-	superfamily_SSF52540
EP400	57634	genome.wustl.edu	37	12	132529956	132529956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015409.3	+1	validated	p.R2292C	0.997	53	0%	41	36.6%	10	20%	unknown(0)	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132534894	132534894	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015409.3	+1	validated	p.T2408	0.137	118	0%	100	36%	18	38.8%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133202291	133202291	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006231.2	-1	validated	p.I2199	0.636	70	0%	37	27%	26	38.4%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133215787	133215787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006231.2	-1	validated	p.R1826W	1.000	33	0%	46	37%	16	43.7%	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	HMMPfam_DUF1744
POLE	5426	genome.wustl.edu	37	12	133226355	133226355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006231.2	-1	validated	p.L1235I	0.984	65	0%	78	30.8%	3	66.6%	benign(0.006)	tolerated(0.5)	neutral(0.010)	NULL
POLE	5426	genome.wustl.edu	37	12	133250289	133250289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006231.2	-1	validated	p.V411L	1.000	351	0%	260	51.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
ANKLE2	23141	genome.wustl.edu	37	12	133331649	133331649	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015114.1	-1	validated	p.I84	0.463	126	0%	95	23.2%	15	46.6%	-	-	-	HMMPfam_LEM,superfamily_LEM domain
ENSG00000214029	0	genome.wustl.edu	37	12	133697516	133697516	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000397313	-1	known	p.K330T	0.000	12	0%	14	28.6%	0	-	possibly_damaging(0.643)	tolerated(0.48)	neutral(0.236)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF268	10795	genome.wustl.edu	37	12	133780587	133780587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003415.2	+1	validated	p.R772Q	0.834	32	0%	27	33.3%	7	28.5%	probably_damaging(0.992)	tolerated(0.62)	neutral(0.452)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TUBA3C	7278	genome.wustl.edu	37	13	19748203	19748203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006001.1	-1	reviewed	p.A385T	1.000	118	0.8%	114	41.2%	0	-	possibly_damaging(0.491)	deleterious(0)	deleterious(0.608)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TUBA3C	7278	genome.wustl.edu	37	13	19751171	19751171	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006001.1	-1	reviewed	p.L318	1.000	125	0%	125	26.4%	0	-	-	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TPTE2	93492	genome.wustl.edu	37	13	19997290	19997290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199254.2	-1	validated	p.R494K	0.920	149	0%	138	35.5%	0	-	benign(0.038)	tolerated(1)	neutral(0.002)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
TPTE2	93492	genome.wustl.edu	37	13	20012253	20012253	+	Silent	SNP	G	G	A	rs190246221	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199254.2	-1	validated	p.S338	0.000	274	0.4%	194	27.8%	0	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE2	93492	genome.wustl.edu	37	13	20025334	20025334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199254.2	-1	validated	p.R258Q	0.008	102	0%	82	40.2%	0	-	benign(0.004)	tolerated(0.48)	neutral(0.011)	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE2	93492	genome.wustl.edu	37	13	20039660	20039660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199254.2	-1	validated	p.R186I	0.987	150	0%	150	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
MPHOSPH8	54737	genome.wustl.edu	37	13	20220922	20220922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017520.3	+1	validated	p.D237Y	1.000	151	0%	183	27.9%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MPHOSPH8	54737	genome.wustl.edu	37	13	20220987	20220987	+	Silent	SNP	C	C	T	rs45461394		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017520.3	+1	validated	p.V258	0.002	241	0%	250	28%	9	11.1%	-	-	-	NULL
PSPC1	55269	genome.wustl.edu	37	13	20251931	20251931	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_003272.1	-1	validated	NULL	0.000	39	0%	30	26.7%	12	33.3%	-	-	-	-
PSPC1	55269	genome.wustl.edu	37	13	20346537	20346537	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042414.1	-1	validated	p.E173	0.874	123	0%	116	34.5%	28	28.5%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZMYM5	9205	genome.wustl.edu	37	13	20412933	20412933	+	Missense_Mutation	SNP	C	C	T	rs143728763	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142684.1	-1	validated	p.R260Q	1.000	374	0%	416	31%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-FCS,HMMSmart_SM00746
ZMYM2	7750	genome.wustl.edu	37	13	20610978	20610978	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003453.2	+1	validated	p.E741*	1.000	62	0%	57	10.5%	15	0%	-	-	-	HMMPfam_zf-FCS,HMMSmart_TRASH
ZMYM2	7750	genome.wustl.edu	37	13	20635277	20635277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003453.2	+1	validated	p.S942P	0.981	73	0%	56	48.2%	17	52.9%	benign(0)	tolerated(1)	-	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20657043	20657043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003453.2	+1	validated	p.T1231A	1.000	110	0%	112	31.2%	10	20%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
GJA3	2700	genome.wustl.edu	37	13	20717374	20717374	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021954.3	-1	reviewed	p.S18	0.979	21	0%	25	48%	0	-	-	-	-	HMMPfam_Connexin
GJB6	10804	genome.wustl.edu	37	13	20797024	20797024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001110219.2	-1	reviewed	p.S199Y	0.997	220	0%	206	34%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Connexin_CCC
IFT88	8100	genome.wustl.edu	37	13	21175993	21175993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175605.3	+1	reviewed	p.R330Q	0.186	118	0%	93	24.7%	2	50%	benign(0.01)	tolerated(0.49)	neutral(0.011)	superfamily_TPR-like
XPO4	64328	genome.wustl.edu	37	13	21381737	21381737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022459.4	-1	validated	p.P559L	1.000	91	0%	58	29.3%	6	100%	possibly_damaging(0.832)	tolerated(0.31)	neutral(0.344)	superfamily_ARM-type_fold
XPO4	64328	genome.wustl.edu	37	13	21396401	21396401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022459.4	-1	validated	p.D290Y	1.000	139	0%	97	17.5%	5	20%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	superfamily_ARM-type_fold
LATS2	26524	genome.wustl.edu	37	13	21619894	21619894	+	Missense_Mutation	SNP	G	G	A	rs55842804		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014572.2	-1	reviewed	p.S91L	0.955	122	0%	111	26.1%	1	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
SKA3	221150	genome.wustl.edu	37	13	21734122	21734122	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000314759	-1	known	p.A278	0.000	156	0%	144	24.3%	10	40%	-	-	-	NULL
MRP63	78988	genome.wustl.edu	37	13	21751352	21751352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024026.4	+1	reviewed	p.K99N	1.000	37	0%	37	32.4%	288	41.3%	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	NULL
SGCG	6445	genome.wustl.edu	37	13	23777922	23777922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000231.2	+1	reviewed	p.G30D	1.000	177	0%	190	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sarcoglycan_1
SGCG	6445	genome.wustl.edu	37	13	23894874	23894874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000231.2	+1	reviewed	p.I226S	0.844	40	0%	31	19.4%	0	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	HMMPfam_Sarcoglycan_1
SACS	26278	genome.wustl.edu	37	13	23905090	23905090	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014363.4	-1	reviewed	p.E4309*	1.000	248	0%	182	29.1%	4	25%	-	-	-	superfamily_Chaperone J-domain
SACS	26278	genome.wustl.edu	37	13	23909144	23909144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014363.4	-1	reviewed	p.K2957N	0.989	165	0%	146	30.8%	0	-	possibly_damaging(0.545)	tolerated(0.3)	neutral(0.213)	NULL
SACS	26278	genome.wustl.edu	37	13	23909298	23909298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014363.4	-1	reviewed	p.R2906Q	0.991	88	0%	93	37.6%	1	100%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	NULL
SACS	26278	genome.wustl.edu	37	13	23910763	23910763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014363.4	-1	reviewed	p.E2418*	1.000	83	0%	72	23.6%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23910865	23910865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014363.4	-1	reviewed	p.E2384K	1.000	78	0%	64	26.6%	0	-	probably_damaging(0.982)	tolerated(0.42)	neutral(0.441)	NULL
SACS	26278	genome.wustl.edu	37	13	23911432	23911432	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014363.4	-1	reviewed	p.K2195Q	1.000	105	0%	67	26.9%	0	-	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	NULL
SACS	26278	genome.wustl.edu	37	13	23912290	23912290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014363.4	-1	reviewed	p.N1909D	1.000	85	0%	96	32.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MIPEP	4285	genome.wustl.edu	37	13	24443523	24443523	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005932.2	-1	reviewed	p.E284A	0.974	163	0%	113	21.2%	31	41.9%	probably_damaging(0.991)	tolerated(0.1)	deleterious(0.730)	HMMPfam_Peptidase_M3,superfamily_SSF55486
MIPEP	4285	genome.wustl.edu	37	13	24444223	24444223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005932.2	-1	reviewed	p.R239C	0.687	160	0%	99	21.2%	12	25%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF55486
SPATA13	221178	genome.wustl.edu	37	13	24823618	24823618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000424834	+1	known	p.R590H	0.092	16	0%	13	61.5%	1	0%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	NULL
PARP4	143	genome.wustl.edu	37	13	25075900	25075900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006437.3	-1	reviewed	p.V69F	0.004	144	0%	129	29.5%	12	33.3%	possibly_damaging(0.538)	deleterious(0.01)	deleterious(0.588)	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT
ATP12A	479	genome.wustl.edu	37	13	25262634	25262634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001676.5	+1	reviewed	p.S136G	0.024	602	0%	580	27.1%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	superfamily_Calcium ATPase transmembrane domain M
ATP12A	479	genome.wustl.edu	37	13	25283929	25283929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001676.5	+1	reviewed	p.Y909C	0.000	151	0%	144	31.9%	0	-	benign(0.016)	tolerated(0.16)	neutral(0.060)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
RNF17	56163	genome.wustl.edu	37	13	25352514	25352514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031277.2	+1	reviewed	p.K133N	0.214	296	0%	276	31.5%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
RNF17	56163	genome.wustl.edu	37	13	25353862	25353862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031277.2	+1	reviewed	p.E163K	1.000	127	0%	128	30.5%	0	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
RNF17	56163	genome.wustl.edu	37	13	25367210	25367210	+	Silent	SNP	G	G	A	rs140799195		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031277.2	+1	reviewed	p.Q322	0.982	400	0.3%	334	28.1%	0	-	-	-	-	NULL
RNF17	56163	genome.wustl.edu	37	13	25376591	25376591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031277.2	+1	reviewed	p.V611I	1.000	318	0%	223	36.8%	0	-	probably_damaging(0.996)	tolerated(0.39)	deleterious(0.478)	NULL
RNF17	56163	genome.wustl.edu	37	13	25399880	25399880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031277.2	+1	reviewed	p.D739Y	1.000	206	0%	180	29.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT
CENPJ	55835	genome.wustl.edu	37	13	25458195	25458195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018451.3	-1	reviewed	p.E1244*	1.000	160	0%	131	32.1%	2	0%	-	-	-	HMMPfam_Tcp10_C
CENPJ	55835	genome.wustl.edu	37	13	25458546	25458546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018451.3	-1	reviewed	p.R1178Q	0.998	116	0%	107	38.3%	1	0%	benign(0.024)	tolerated(0.08)	neutral(0.301)	HMMPfam_Tcp10_C
CENPJ	55835	genome.wustl.edu	37	13	25486770	25486770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018451.3	-1	reviewed	p.E132K	0.905	200	0%	150	31.3%	1	100%	benign(0.141)	deleterious(0.02)	neutral(0.395)	NULL
MTMR6	9107	genome.wustl.edu	37	13	25826071	25826071	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000319298	-1	known	p.E36*	0.974	397	0%	271	33.9%	7	71.4%	-	-	-	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26108321	26108321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000381648	+1	known	p.E130D	0.088	61	0%	52	40.4%	0	-	possibly_damaging(0.647)	tolerated(0.49)	neutral(0.238)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26108340	26108340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000381648	+1	known	p.E137K	0.000	59	0%	52	28.8%	0	-	benign(0.001)	tolerated(0.68)	neutral(0.002)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26153952	26153952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016529.4	+1	validated	p.R625Q	1.000	150	0%	122	41%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP8A2	51761	genome.wustl.edu	37	13	26163784	26163784	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016529.4	+1	validated	p.R720*	0.312	144	0%	120	29.2%	0	-	-	-	-	superfamily_HAD-like
ATP8A2	51761	genome.wustl.edu	37	13	26343277	26343277	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016529.4	+1	validated	p.V826	0.786	79	0%	66	27.3%	0	-	-	-	-	superfamily_HAD-like
GSX1	219409	genome.wustl.edu	37	13	28368023	28368023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145657.1	+1	provisional	p.E245K	1.000	44	0%	43	34.9%	0	-	benign(0.028)	deleterious(0.04)	neutral(0.350)	NULL
POMP	51371	genome.wustl.edu	37	13	29246475	29246475	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015932.4	+1	validated	e5-1	1.000	157	0%	146	23.3%	1	100%	-	-	-	-
MTUS2	23281	genome.wustl.edu	37	13	29599633	29599633	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033602.2	+1	validated	p.V276	0.000	87	0%	62	22.6%	0	-	-	-	-	NULL
USPL1	10208	genome.wustl.edu	37	13	31195963	31195963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005800.4	+1	validated	p.K54N	0.899	250	0%	181	26%	4	25%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
USPL1	10208	genome.wustl.edu	37	13	31216843	31216843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005800.4	+1	validated	p.S354Y	0.994	335	0%	294	15.3%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USPL1	10208	genome.wustl.edu	37	13	31231887	31231887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005800.4	+1	validated	p.R558H	0.000	198	0.5%	214	29.4%	5	80%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
TEX26	122046	genome.wustl.edu	37	13	31543171	31543171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152325.1	+1	predicted	p.L266F	0.684	149	0%	148	16.2%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31719765	31719765	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006644.2	-1	validated	p.E507*	0.995	104	0%	98	35.7%	38	0%	-	-	-	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
B3GALTL	145173	genome.wustl.edu	37	13	31843412	31843412	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194318.3	+1	reviewed	p.E220*	1.000	110	0%	74	23%	4	0%	-	-	-	NULL
RXFP2	122042	genome.wustl.edu	37	13	32313793	32313793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130806.3	+1	reviewed	p.L15S	0.000	184	0%	160	28.7%	0	-	benign(0.383)	deleterious(0)	deleterious(0.567)	NULL
RXFP2	122042	genome.wustl.edu	37	13	32356834	32356834	+	Silent	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130806.3	+1	reviewed	p.I293	1.000	129	0%	127	40.2%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
RXFP2	122042	genome.wustl.edu	37	13	32366121	32366121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130806.3	+1	reviewed	p.F442V	0.989	232	0%	196	25.5%	0	-	benign(0.001)	tolerated(0.63)	neutral(0.004)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FRY	10129	genome.wustl.edu	37	13	32758786	32758786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023037.2	+1	validated	p.R1035Q	1.000	132	0%	128	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FRY	10129	genome.wustl.edu	37	13	32828498	32828498	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023037.2	+1	validated	p.F2461	0.997	193	0%	209	34.9%	0	-	-	-	-	NULL
FRY	10129	genome.wustl.edu	37	13	32839599	32839599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023037.2	+1	validated	p.R2598C	0.006	70	0%	78	29.5%	2	0%	benign(0.037)	deleterious(0.05)	neutral(0.347)	NULL
BRCA2	675	genome.wustl.edu	37	13	32907425	32907425	+	Nonsense_Mutation	SNP	A	A	T	rs80358467		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000059.3	+1	reviewed	p.K604*	0.445	129	0%	143	15.4%	0	-	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32920972	32920972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000059.3	+1	reviewed	p.K2316Q	0.992	54	0%	37	40.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33016731	33016731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033111.3	-1	validated	p.S648L	0.000	69	0%	80	31.2%	1	0%	benign(0.002)	tolerated(1)	-	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33016755	33016755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033111.3	-1	validated	p.I640S	0.076	79	0%	81	40.7%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33016813	33016813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033111.3	-1	validated	p.E621K	0.001	83	0%	86	20.9%	2	50%	benign(0.002)	tolerated(0.78)	neutral(0.001)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33016949	33016949	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033111.3	-1	validated	p.Y575*	0.173	71	0%	93	26.9%	0	-	-	-	-	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33017475	33017475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033111.3	-1	validated	p.R400I	1.000	117	0%	125	28%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PDS5B	23047	genome.wustl.edu	37	13	33258159	33258159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015032.3	+1	reviewed	p.R401Q	1.000	188	0%	178	30.3%	8	25%	possibly_damaging(0.91)	deleterious(0.01)	deleterious(0.768)	HMMPfam_HEAT,superfamily_ARM repeat
PDS5B	23047	genome.wustl.edu	37	13	33275460	33275460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015032.3	+1	reviewed	p.R581C	1.000	81	0%	79	24.1%	5	0%	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	superfamily_ARM repeat
PDS5B	23047	genome.wustl.edu	37	13	33327528	33327528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015032.3	+1	reviewed	p.R932H	1.000	342	0%	354	29.1%	12	66.6%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	superfamily_ARM repeat
PDS5B	23047	genome.wustl.edu	37	13	33327578	33327578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015032.3	+1	reviewed	p.D949Y	1.000	269	0%	290	13.8%	12	8.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_ARM repeat
STARD13	90627	genome.wustl.edu	37	13	33703873	33703873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178006.3	-1	validated	p.S314L	0.000	150	0%	175	29.1%	2	0%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
RFC3	5983	genome.wustl.edu	37	13	34395333	34395333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002915.3	+1	reviewed	p.R51I	1.000	156	0%	118	28%	15	53.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
NBEA	26960	genome.wustl.edu	37	13	35692379	35692379	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015678.4	+1	validated	p.K699	0.998	23	0%	20	45%	0	-	-	-	-	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	35733260	35733260	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015678.4	+1	validated	p.I984	0.997	236	0%	189	28.6%	0	-	-	-	-	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	35751217	35751217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015678.4	+1	validated	p.R1547C	0.993	40	0%	34	20.6%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_ARM repeat
MAB21L1	4081	genome.wustl.edu	37	13	36049739	36049739	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005584.4	-1	reviewed	p.I179	1.000	56	0%	38	34.2%	0	-	-	-	-	HMMPfam_Mab-21
NBEA	26960	genome.wustl.edu	37	13	36124665	36124665	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015678.4	+1	validated	p.R2213*	1.000	71	0%	72	23.6%	0	-	-	-	-	superfamily_ARM repeat,superfamily_PH domain-like
NBEA	26960	genome.wustl.edu	37	13	36167505	36167505	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015678.4	+1	validated	p.K2406T	1.000	255	0%	173	33.5%	0	-	benign(0.327)	deleterious(0)	deleterious(0.547)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	36202322	36202322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015678.4	+1	validated	p.F2518L	0.984	66	0%	55	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
DCLK1	9201	genome.wustl.edu	37	13	36384991	36384991	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004734.3	-1	validated	p.E557*	1.000	343	0%	234	32.5%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DCLK1	9201	genome.wustl.edu	37	13	36396903	36396903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004734.3	-1	validated	p.N506S	1.000	171	0%	169	29.6%	0	-	benign(0.004)	tolerated(0.63)	neutral(0.004)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SMAD9	4093	genome.wustl.edu	37	13	37453491	37453491	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127217.2	-1	reviewed	p.C112*	1.000	61	0%	65	35.4%	0	-	-	-	-	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain
ALG5	29880	genome.wustl.edu	37	13	37524129	37524129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013338.4	-1	reviewed	p.R309*	1.000	87	0%	91	30.8%	37	59.4%	-	-	-	NULL
EXOSC8	11340	genome.wustl.edu	37	13	37582255	37582255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181503.2	+1	reviewed	p.K183N	1.000	138	0%	104	27.9%	31	9.6%	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
POSTN	10631	genome.wustl.edu	37	13	38144729	38144729	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006475.2	-1	validated	p.R753*	1.000	163	0%	135	31.9%	240	0%	-	-	-	NULL
POSTN	10631	genome.wustl.edu	37	13	38156504	38156504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006475.2	-1	validated	p.T464I	1.000	137	0%	119	25.2%	198	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
POSTN	10631	genome.wustl.edu	37	13	38162058	38162058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006475.2	-1	validated	p.M169I	1.000	98	0%	56	32.1%	135	0%	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
TRPC4	7223	genome.wustl.edu	37	13	38266254	38266254	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003306.1	-1	validated	p.S372	1.000	132	0%	108	29.6%	3	0%	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38320491	38320491	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003306.1	-1	validated	p.L160	0.228	259	0%	189	32.8%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TRPC4	7223	genome.wustl.edu	37	13	38357448	38357448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003306.1	-1	validated	p.R8I	0.997	280	0%	249	27.3%	2	0%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	superfamily_ANK
FREM2	341640	genome.wustl.edu	37	13	39264573	39264573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207361.4	+1	reviewed	p.S1031Y	1.000	161	0%	117	24.8%	0	-	benign(0.408)	tolerated(1)	neutral(0.132)	NULL
FREM2	341640	genome.wustl.edu	37	13	39265291	39265291	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207361.4	+1	reviewed	p.S1270	0.504	287	0%	224	26.8%	0	-	-	-	-	NULL
FREM2	341640	genome.wustl.edu	37	13	39266589	39266589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207361.4	+1	reviewed	p.A1703G	0.058	187	0%	172	35.5%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
FREM2	341640	genome.wustl.edu	37	13	39338572	39338572	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207361.4	+1	reviewed	p.E1799*	1.000	207	0%	156	33.3%	0	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
FREM2	341640	genome.wustl.edu	37	13	39448662	39448662	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207361.4	+1	reviewed	p.R2740	0.028	178	0%	140	28.6%	0	-	-	-	-	NULL
FREM2	341640	genome.wustl.edu	37	13	39450285	39450285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207361.4	+1	reviewed	p.A2803V	1.000	327	0%	258	20.9%	0	-	possibly_damaging(0.92)	deleterious(0.05)	deleterious(0.716)	NULL
STOML3	161003	genome.wustl.edu	37	13	39542625	39542625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145286.2	-1	validated	p.R188Q	0.996	180	0%	135	26.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Band_7,HMMSmart_PHB,PatternScan_BAND_7
STOML3	161003	genome.wustl.edu	37	13	39550698	39550698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145286.2	-1	validated	p.A70T	1.000	88	0%	86	36%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_Band_7,HMMSmart_PHB
NHLRC3	387921	genome.wustl.edu	37	13	39613381	39613381	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012754.2	+1	validated	p.C65G	1.000	62	0%	46	21.7%	7	14.2%	benign(0)	tolerated(0.25)	neutral(0.037)	superfamily_SSF101898
COG6	57511	genome.wustl.edu	37	13	40251610	40251610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020751.2	+1	reviewed	p.K145T	0.888	135	0%	126	31.7%	6	33.3%	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_COG6
FOXO1	2308	genome.wustl.edu	37	13	41134988	41134988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002015.3	-1	reviewed	p.R214C	1.000	142	0%	115	28.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_2,superfamily_SSF46785
MRPS31	10240	genome.wustl.edu	37	13	41345246	41345246	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005830.3	-1	reviewed	p.L9	0.000	59	0%	66	34.8%	16	56.2%	-	-	-	NULL
ELF1	1997	genome.wustl.edu	37	13	41515415	41515415	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172373.3	-1	reviewed	p.N300H	1.000	396	0%	307	31.6%	15	40%	benign(0.159)	deleterious(0)	neutral(0.459)	superfamily_SSF46785
ELF1	1997	genome.wustl.edu	37	13	41533092	41533092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172373.3	-1	reviewed	p.L45F	1.000	105	0%	105	10.5%	23	4.3%	probably_damaging(0.992)	tolerated(0.15)	deleterious(0.689)	NULL
WBP4	11193	genome.wustl.edu	37	13	41642768	41642768	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007187.3	+1	reviewed	p.E112*	1.000	118	0%	110	29.1%	8	0%	-	-	-	NULL
ENSG00000247476	0	genome.wustl.edu	37	13	41766274	41766274	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000501885	+1	novel	NULL	0.001	108	0%	73	28.8%	2	0%	-	-	-	-
KIAA0564	23078	genome.wustl.edu	37	13	42461407	42461407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015058.1	-1	validated	p.Y248H	1.000	136	0%	123	35%	4	25%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DGKH	160851	genome.wustl.edu	37	13	42763187	42763187	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178009.2	+1	reviewed	p.E552*	1.000	180	0%	118	21.2%	0	-	-	-	-	NULL
AKAP11	11215	genome.wustl.edu	37	13	42877168	42877168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016248.2	+1	reviewed	p.R1429I	0.059	194	0%	184	32.6%	4	25%	possibly_damaging(0.906)	tolerated(0.11)	deleterious(0.631)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42882603	42882603	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016248.2	+1	reviewed	p.E1711*	1.000	212	0%	182	30.2%	4	0%	-	-	-	NULL
TNFSF11	8600	genome.wustl.edu	37	13	43155284	43155284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003701.3	+1	reviewed	p.E81G	1.000	148	0%	105	31.4%	3	0%	benign(0.105)	deleterious(0.02)	neutral(0.391)	NULL
ENOX1	55068	genome.wustl.edu	37	13	43896593	43896593	+	Silent	SNP	G	G	A	rs185833367	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127615.1	-1	validated	p.R396	0.233	94	0%	98	27.6%	1	0%	-	-	-	NULL
ENOX1	55068	genome.wustl.edu	37	13	43986183	43986183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127615.1	-1	validated	p.D26A	1.000	111	0%	86	31.4%	2	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
CCDC122	160857	genome.wustl.edu	37	13	44433939	44433939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144974.3	-1	validated	p.V142I	0.024	501	0%	368	12.2%	2	0%	benign(0.01)	tolerated(0.76)	neutral(0.002)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46542094	46542094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015070.3	-1	validated	p.R1289I	1.000	430	0%	368	35.3%	12	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46554134	46554134	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015070.3	-1	validated	p.R576*	1.000	160	0%	138	28.3%	8	12.5%	-	-	-	NULL
LRCH1	23143	genome.wustl.edu	37	13	47243166	47243166	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015116.2	+1	reviewed	p.R152*	1.000	267	0%	287	30.7%	8	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
LRCH1	23143	genome.wustl.edu	37	13	47263285	47263285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015116.2	+1	reviewed	p.S323L	1.000	281	0%	236	25.4%	8	87.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRCH1	23143	genome.wustl.edu	37	13	47269155	47269155	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000258643	+1	known	p.A416	0.999	270	0%	228	29.8%	0	-	-	-	-	NULL
LRCH1	23143	genome.wustl.edu	37	13	47308114	47308114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015116.2	+1	reviewed	p.R654Q	1.000	118	0%	81	32.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
HTR2A	3356	genome.wustl.edu	37	13	47409725	47409725	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000621.3	-1	reviewed	p.V221	1.000	167	0%	139	28.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ITM2B	9445	genome.wustl.edu	37	13	48833071	48833071	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021999.4	+1	reviewed	p.E235*	1.000	148	0%	112	30.4%	791	32.6%	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	48937047	48937047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000321.2	+1	reviewed	p.R272I	1.000	237	0%	206	26.2%	10	30%	possibly_damaging(0.942)	tolerated(0.06)	deleterious(0.710)	NULL
CDADC1	81602	genome.wustl.edu	37	13	49841907	49841907	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030911.2	+1	validated	p.E238*	1.000	127	0%	127	32.3%	2	0%	-	-	-	NULL
SETDB2	83852	genome.wustl.edu	37	13	50056948	50056948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031915.2	+1	validated	p.K423T	0.936	80	0%	62	25.8%	5	20%	possibly_damaging(0.916)	tolerated(0.16)	neutral(0.426)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
PHF11	51131	genome.wustl.edu	37	13	50080832	50080832	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040443.1	+1	validated	p.V52	0.021	78	0%	77	40.3%	15	46.6%	-	-	-	NULL
RCBTB1	55213	genome.wustl.edu	37	13	50115896	50115896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018191.3	-1	reviewed	p.D414N	1.000	78	0%	83	32.5%	7	28.5%	benign(0.004)	tolerated(0.25)	neutral(0.037)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
KPNA3	3839	genome.wustl.edu	37	13	50306552	50306552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002267.3	-1	reviewed	p.S113Y	1.000	197	0%	156	25%	6	16.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
FAM124A	220108	genome.wustl.edu	37	13	51855035	51855035	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145019.2	+1	predicted	p.V464	0.996	94	0%	82	24.4%	7	14.2%	-	-	-	NULL
CCDC70	83446	genome.wustl.edu	37	13	52439800	52439800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031290.2	+1	validated	p.E96*	0.380	352	0%	297	33.7%	0	-	-	-	-	NULL
ALG11	440138	genome.wustl.edu	37	13	52598639	52598639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004127.1	+1	provisional	p.S258Y	1.000	145	0%	145	30.3%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53756
ALG11	440138	genome.wustl.edu	37	13	52598996	52598996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004127.1	+1	provisional	p.P377Q	1.000	166	0%	173	34.1%	13	30.7%	possibly_damaging(0.899)	tolerated(0.09)	deleterious(0.652)	HMMPfam_Glycos_transf_1,superfamily_SSF53756
NEK5	341676	genome.wustl.edu	37	13	52667348	52667348	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199289.1	-1	provisional	p.K350N	0.433	132	0%	140	31.4%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
NEK3	4752	genome.wustl.edu	37	13	52728046	52728046	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000258597	-1	known	p.L98*	1.000	160	0%	108	31.5%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
THSD1	55901	genome.wustl.edu	37	13	52971994	52971994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018676.3	-1	reviewed	p.V132I	0.027	134	0%	131	32.1%	0	-	benign(0.002)	tolerated(1)	-	NULL
SUGT1	10910	genome.wustl.edu	37	13	53241027	53241027	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130912.1	+1	reviewed	p.Q232	1.000	127	0%	109	27.5%	69	40.5%	-	-	-	superfamily_HSP20-like chaperones,HMMPfam_CS
PCDH17	27253	genome.wustl.edu	37	13	58207200	58207200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040429.2	+1	reviewed	p.D174N	1.000	24	0%	16	37.5%	0	-	probably_damaging(0.981)	tolerated(1)	neutral(0.425)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58208702	58208702	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040429.2	+1	reviewed	p.S674	0.003	31	0%	29	37.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DIAPH3	81624	genome.wustl.edu	37	13	60240874	60240874	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042517.1	-1	validated	p.T1142	0.952	353	0%	301	33.9%	6	66.6%	-	-	-	NULL
DIAPH3	81624	genome.wustl.edu	37	13	60453488	60453488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042517.1	-1	validated	p.E828K	1.000	128	0%	95	30.5%	1	100%	probably_damaging(0.989)	tolerated(0.09)	deleterious(0.736)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
DIAPH3	81624	genome.wustl.edu	37	13	60498959	60498959	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042517.1	-1	validated	p.K707T	1.000	182	0%	144	30.6%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
DIAPH3	81624	genome.wustl.edu	37	13	60545030	60545030	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042517.1	-1	validated	p.E639*	1.000	90	0%	59	45.8%	2	0%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
TDRD3	81550	genome.wustl.edu	37	13	61102575	61102575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030794.2	+1	validated	p.D313Y	1.000	208	0%	155	31.6%	10	20%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
LOC390407	390407	genome.wustl.edu	37	13	61211535	61211535	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078475.1	-1	model	NULL	1.000	85	0%	95	31.6%	0	-	-	-	-	-
PCDH20	64881	genome.wustl.edu	37	13	61987520	61987520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022843.3	-1	validated	p.D238Y	1.000	204	0%	189	35.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH9	5101	genome.wustl.edu	37	13	67205403	67205403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203487.2	-1	reviewed	p.F1093L	1.000	101	0%	69	27.5%	0	-	possibly_damaging(0.836)	tolerated(0.44)	neutral(0.332)	NULL
PCDH9	5101	genome.wustl.edu	37	13	67799652	67799652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203487.2	-1	reviewed	p.V974A	1.000	139	0%	87	33.3%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Protocadherin
PCDH9	5101	genome.wustl.edu	37	13	67800839	67800839	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203487.2	-1	reviewed	p.Q578H	0.991	263	0%	189	39.2%	0	-	possibly_damaging(0.949)	deleterious(0.02)	deleterious(0.776)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDH9	5101	genome.wustl.edu	37	13	67801444	67801444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203487.2	-1	reviewed	p.D377Y	1.000	240	0%	185	28.6%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_Cadherin,superfamily_Cadherin-like
KLHL1	57626	genome.wustl.edu	37	13	70456597	70456597	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020866.2	-1	validated	p.E349*	1.000	122	0%	106	30.2%	0	-	-	-	-	HMMPfam_BACK
DIS3	22894	genome.wustl.edu	37	13	73345072	73345072	+	Silent	SNP	C	C	T	rs182902184	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014953.3	-1	validated	p.T575	0.004	110	0%	70	27.1%	12	8.3%	-	-	-	HMMPfam_RNB
DIS3	22894	genome.wustl.edu	37	13	73347916	73347916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014953.3	-1	validated	p.R382Q	1.000	186	0%	114	36.8%	9	22.2%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
DIS3	22894	genome.wustl.edu	37	13	73352346	73352346	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014953.3	-1	validated	p.E187*	1.000	52	0%	24	16.7%	2	0%	-	-	-	superfamily_PIN domain-like
KLF5	688	genome.wustl.edu	37	13	73636180	73636180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001730.3	+1	reviewed	p.T148N	1.000	177	0%	193	30.1%	52	44.2%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
KLF12	11278	genome.wustl.edu	37	13	74420001	74420001	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007249.4	-1	validated	p.V211	0.986	140	0%	115	39.1%	0	-	-	-	-	NULL
KLF12	11278	genome.wustl.edu	37	13	74420218	74420218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007249.4	-1	validated	p.S139L	1.000	90	0%	105	27.6%	1	0%	benign(0.001)	tolerated(0.65)	neutral(0.003)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75861011	75861011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014832.2	-1	validated	p.D1272N	1.000	165	0%	137	27%	4	0%	benign(0.001)	tolerated(0.87)	neutral(0.001)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75886878	75886878	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014832.2	-1	validated	p.Q793	0.995	82	0%	68	22.1%	2	0%	-	-	-	NULL
LMO7	4008	genome.wustl.edu	37	13	76374965	76374965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005358.5	+1	reviewed	p.S255L	0.993	383	0%	324	27.2%	15	20%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LMO7	4008	genome.wustl.edu	37	13	76378602	76378602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015842.2	+1	reviewed	p.K47T	1.000	226	0%	222	30.6%	13	15.3%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	NULL
CLN5	1203	genome.wustl.edu	37	13	77574896	77574896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006493.2	+1	reviewed	p.R339I	0.010	172	0%	127	25.2%	35	42.8%	benign(0.025)	deleterious(0.04)	neutral(0.350)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77629697	77629697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015057.4	-1	validated	p.R4510I	1.000	115	0%	106	27.4%	6	0%	benign(0.002)	deleterious(0.05)	neutral(0.345)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77714205	77714205	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015057.4	-1	validated	p.G2461*	1.000	86	0%	65	35.4%	1	0%	-	-	-	NULL
SCEL	8796	genome.wustl.edu	37	13	78171684	78171684	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144777.2	+1	validated	p.E253*	0.997	51	0%	54	20.4%	5	0%	-	-	-	NULL
SCEL	8796	genome.wustl.edu	37	13	78176802	78176802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144777.2	+1	validated	p.E331K	0.000	293	0%	215	26.5%	1	0%	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
EDNRB	1910	genome.wustl.edu	37	13	78475215	78475215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000115.2	-1	reviewed	p.A310D	1.000	205	0%	175	32%	2	0%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNF219	79596	genome.wustl.edu	37	13	79191011	79191011	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024546.3	-1	validated	p.G295	0.319	101	0%	138	27.5%	12	33.3%	-	-	-	NULL
RNF219	79596	genome.wustl.edu	37	13	79219089	79219089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024546.3	-1	validated	p.S39L	1.000	207	0%	188	27.7%	6	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C3HC4,superfamily_RING/U-box
SLITRK6	84189	genome.wustl.edu	37	13	86368951	86368951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032229.2	-1	validated	p.L565I	1.000	146	0%	153	25.5%	0	-	possibly_damaging(0.485)	tolerated(0.49)	neutral(0.172)	HMMSmart_SM00082,superfamily_L domain-like
SLITRK6	84189	genome.wustl.edu	37	13	86369645	86369645	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032229.2	-1	validated	p.C333W	0.989	170	0%	177	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
SLITRK6	84189	genome.wustl.edu	37	13	86370276	86370276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032229.2	-1	validated	p.S123Y	0.998	233	0%	263	27.4%	0	-	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	HMMSmart_SM00369,superfamily_L domain-like
SLITRK6	84189	genome.wustl.edu	37	13	86370628	86370628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032229.2	-1	validated	p.H6N	0.852	160	0%	162	22.8%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
SLITRK5	26050	genome.wustl.edu	37	13	88329437	88329437	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015567.1	+1	validated	p.F598	1.000	226	0%	203	30%	0	-	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88329975	88329975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015567.1	+1	validated	p.D778Y	1.000	48	0%	49	22.4%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
MIR18A	406953	genome.wustl.edu	37	13	92003032	92003032	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000362310	+1	known	NULL	1.000	114	0%	97	15.5%	0	-	-	-	-	-
GPC5	2262	genome.wustl.edu	37	13	92345789	92345789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004466.4	+1	reviewed	p.F225S	0.995	65	0%	59	30.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glypican
GPC6	10082	genome.wustl.edu	37	13	94938627	94938627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005708.3	+1	reviewed	p.R301Q	1.000	81	0%	78	41%	2	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Glypican
DCT	1638	genome.wustl.edu	37	13	95092216	95092216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001129889.1	-1	validated	p.R532Q	0.305	165	0%	114	27.2%	0	-	benign(0.222)	tolerated(0.2)	neutral(0.071)	NULL
DCT	1638	genome.wustl.edu	37	13	95092217	95092217	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001129889.1	-1	validated	p.R532*	0.313	166	0%	115	25.2%	0	-	-	-	-	NULL
GPR180	160897	genome.wustl.edu	37	13	95271420	95271420	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_180989.4	+1	reviewed	p.F174L	1.000	186	0%	144	29.2%	11	90.9%	benign(0.203)	tolerated(0.3)	neutral(0.048)	HMMPfam_GpcrRhopsn4
SOX21	11166	genome.wustl.edu	37	13	95364028	95364028	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007084.2	-1	validated	p.F92	1.000	43	0%	12	33.3%	0	-	-	-	-	NULL
ABCC4	10257	genome.wustl.edu	37	13	95723929	95723929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005845.3	-1	reviewed	p.K1066T	0.993	395	0%	494	31.8%	2	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC4	10257	genome.wustl.edu	37	13	95887049	95887049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005845.3	-1	reviewed	p.I116V	0.847	98	0%	78	37.2%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DZIP1	22873	genome.wustl.edu	37	13	96239909	96239909	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198968.2	-1	validated	p.L701R	0.424	159	0%	103	23.3%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
UGGT2	55757	genome.wustl.edu	37	13	96635834	96635834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000376714	-1	known	p.L250I	0.001	29	0%	24	20.8%	0	-	-	-	-	NULL
UGGT2	55757	genome.wustl.edu	37	13	96665587	96665587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020121.3	-1	validated	p.L212M	0.944	134	0%	100	28%	10	50%	benign(0.062)	tolerated(0.13)	neutral(0.257)	NULL
OXGR1	27199	genome.wustl.edu	37	13	97639045	97639045	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080818.3	-1	reviewed	p.G323	0.000	296	0%	226	13.7%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
IPO5	3843	genome.wustl.edu	37	13	98654812	98654812	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000469360	+1	known	p.S402L	0.709	139	0%	118	31.4%	23	47.8%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
FARP1	10160	genome.wustl.edu	37	13	99064220	99064220	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000457029	+1	known	p.R115Q	0.280	184	0%	186	24.7%	90	41.1%	-	-	-	HMMPfam_RhoGEF,superfamily_DBL homology domain (DH-domain)
DOCK9	23348	genome.wustl.edu	37	13	99515753	99515753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130049.1	-1	validated	p.F1113L	1.000	315	0%	262	33.2%	4	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
DOCK9	23348	genome.wustl.edu	37	13	99554638	99554638	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130049.1	-1	validated	p.L429	0.565	46	0%	58	27.6%	1	0%	-	-	-	NULL
DOCK9	23348	genome.wustl.edu	37	13	99554656	99554656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130049.1	-1	validated	p.F423L	0.895	45	0%	61	24.6%	1	0%	benign(0.017)	tolerated(0.19)	neutral(0.050)	NULL
GPR183	1880	genome.wustl.edu	37	13	99947820	99947820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004951.4	-1	reviewed	p.P194S	0.998	160	0%	145	25.5%	0	-	possibly_damaging(0.612)	tolerated(0.94)	neutral(0.212)	HMMPfam_7tm_1,superfamily_SSF81321
TM9SF2	9375	genome.wustl.edu	37	13	100188896	100188896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004800.1	+1	provisional	p.D166N	1.000	146	0%	101	29.7%	78	33.3%	possibly_damaging(0.899)	tolerated(0.35)	neutral(0.377)	HMMPfam_EMP70
CLYBL	171425	genome.wustl.edu	37	13	100517169	100517169	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000416504	+1	known	p.V130G	0.008	143	0%	141	22.7%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	superfamily_Pyrv/PenolPyrv_Kinase_cat
CLYBL	171425	genome.wustl.edu	37	13	100523296	100523296	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000339105	+1	known	p.E303*	1.000	288	0%	243	31.3%	2	0%	-	-	-	NULL
TMTC4	84899	genome.wustl.edu	37	13	101277906	101277906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032813.2	-1	validated	p.M573I	1.000	82	0%	53	17%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TMTC4	84899	genome.wustl.edu	37	13	101308638	101308638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032813.2	-1	validated	p.E213*	1.000	72	0%	68	19.1%	8	25%	-	-	-	NULL
NALCN	259232	genome.wustl.edu	37	13	101710371	101710371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052867.2	-1	validated	p.S1648L	1.000	136	0%	122	34.4%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
NALCN	259232	genome.wustl.edu	37	13	101714357	101714357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052867.2	-1	validated	p.R1573H	1.000	91	0%	107	37.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NALCN	259232	genome.wustl.edu	37	13	101733921	101733921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052867.2	-1	validated	p.T1281M	1.000	216	0%	152	33.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	101757268	101757268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052867.2	-1	validated	p.K871N	1.000	123	0%	105	26.7%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	101890181	101890181	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052867.2	-1	validated	p.F453	1.000	264	0%	195	39%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	101997750	101997750	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052867.2	-1	validated	p.L222	1.000	284	0.4%	226	30.1%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ITGBL1	9358	genome.wustl.edu	37	13	102359119	102359119	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004791.1	+1	provisional	p.C382	0.920	141	0%	154	28.6%	4	0%	-	-	-	HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196
TPP2	7174	genome.wustl.edu	37	13	103295683	103295683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003291.2	+1	reviewed	p.S711Y	1.000	95	0%	72	36.1%	3	33.3%	possibly_damaging(0.795)	deleterious(0.02)	deleterious(0.681)	NULL
ERCC5	2073	genome.wustl.edu	37	13	103518248	103518248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000123.2	+1	reviewed	p.Q729R	1.000	109	0%	77	32.5%	4	25%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	superfamily_PIN domain-like
ERCC5	2073	genome.wustl.edu	37	13	103524701	103524701	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000123.2	+1	reviewed	p.S944	0.051	197	0%	164	28.7%	16	31.2%	-	-	-	superfamily_5' to 3' exonuclease C-terminal subdomain
DAOA	267012	genome.wustl.edu	37	13	106142296	106142296	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172370.3	+1	reviewed	p.N110H	0.001	66	0%	56	30.4%	0	-	possibly_damaging(0.765)	deleterious(0)	deleterious(0.728)	NULL
LIG4	3981	genome.wustl.edu	37	13	108861233	108861233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098268.1	-1	reviewed	p.L795R	0.720	104	0%	119	30.3%	0	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
LIG4	3981	genome.wustl.edu	37	13	108863105	108863105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098268.1	-1	reviewed	p.L171R	1.000	100	0%	87	25.3%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DNA_ligase_A_N
ABHD13	84945	genome.wustl.edu	37	13	108882320	108882320	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032859.2	+1	validated	p.K252Q	1.000	169	0%	145	27.6%	20	45%	benign(0.03)	deleterious(0.04)	neutral(0.350)	superfamily_alpha/beta-Hydrolases
TNFSF13B	10673	genome.wustl.edu	37	13	108955899	108955899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006573.3	+1	reviewed	p.R231Q	1.000	181	0.6%	147	27.2%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TNF,superfamily_TNF-like
MYO16	23026	genome.wustl.edu	37	13	109318424	109318424	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015011.1	+1	validated	p.A51	0.001	93	0%	96	43.8%	0	-	-	-	-	superfamily_Ankyrin repeat
MYO16	23026	genome.wustl.edu	37	13	109614805	109614805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015011.1	+1	validated	p.L708S	0.135	108	0%	91	24.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL4A1	1282	genome.wustl.edu	37	13	110822910	110822910	+	Silent	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001845.4	-1	reviewed	p.G1242	0.670	30	0%	27	22.2%	140	0%	-	-	-	HMMPfam_Collagen
COL4A2	1284	genome.wustl.edu	37	13	111160440	111160440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001846.2	+1	reviewed	p.P1585T	1.000	59	0%	42	35.7%	333	0.3%	possibly_damaging(0.865)	tolerated(0.24)	neutral(0.372)	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
COL4A2	1284	genome.wustl.edu	37	13	111164352	111164352	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001846.2	+1	reviewed	p.R1651	0.963	47	0%	37	10.8%	389	0.5%	-	-	-	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
ING1	3621	genome.wustl.edu	37	13	111371744	111371744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005537.3	+1	reviewed	p.R245H	1.000	13	0%	16	31.2%	11	36.3%	benign(0.033)	deleterious(0.01)	neutral(0.407)	NULL
ARHGEF7	8874	genome.wustl.edu	37	13	111929939	111929939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113511.1	+1	reviewed	p.K496N	1.000	117	0%	83	15.7%	11	45.4%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARHGEF7	8874	genome.wustl.edu	37	13	111955399	111955399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113513.1	+1	reviewed	p.K627T	1.000	75	0%	54	42.6%	11	27.2%	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
TUBGCP3	10426	genome.wustl.edu	37	13	113174284	113174284	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006322.4	-1	provisional	p.G599	0.610	144	0%	139	26.6%	10	40%	-	-	-	HMMPfam_Spc97_Spc98
ATP11A	23250	genome.wustl.edu	37	13	113478715	113478715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032189.3	+1	reviewed	p.S283F	1.000	103	0%	91	18.7%	3	33.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Calcium ATPase transmembrane domain M
F10	2159	genome.wustl.edu	37	13	113798205	113798205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000418726	+1	known	p.R58K	0.008	41	0%	25	28%	0	-	-	-	-	NULL
TMCO3	55002	genome.wustl.edu	37	13	114164588	114164588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017905.4	+1	validated	p.M358I	1.000	97	0%	93	14%	10	0%	benign(0.024)	tolerated(0.44)	neutral(0.014)	HMMPfam_Na_H_Exchanger
POTEG	404785	genome.wustl.edu	37	14	19566015	19566015	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005356.2	+1	validated	p.I353M	0.000	357	0%	249	9.6%	0	-	possibly_damaging(0.827)	deleterious(0.03)	deleterious(0.678)	HMMSmart_SM00248,superfamily_Ankyrin repeat
ENSG00000226518	0	genome.wustl.edu	37	14	20085467	20085467	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000422907	+1	known	p.T23	0.995	122	0%	121	14%	0	-	-	-	-	NULL
OR11H2	79334	genome.wustl.edu	37	14	20181301	20181301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000334072	-1	known	p.H259N	1.000	412	0%	458	40.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4N2	390429	genome.wustl.edu	37	14	20295616	20295616	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004723.1	+1	provisional	p.S3	0.000	520	0.2%	502	29.5%	0	-	-	-	-	superfamily_SSF81321
OR4N2	390429	genome.wustl.edu	37	14	20296351	20296351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004723.1	+1	provisional	p.F248L	0.099	345	0%	320	28.1%	0	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_7tm_1,superfamily_SSF81321
OR4N2	390429	genome.wustl.edu	37	14	20296475	20296475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004723.1	+1	provisional	p.R290C	0.601	190	0%	166	31.3%	0	-	benign(0.233)	deleterious(0.01)	neutral(0.429)	superfamily_SSF81321
OR4K1	79544	genome.wustl.edu	37	14	20404405	20404405	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004063.2	+1	validated	p.E194*	0.000	151	0%	128	32.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4L1	122742	genome.wustl.edu	37	14	20528903	20528903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004717.1	+1	provisional	p.S234T	0.000	216	0%	201	28.9%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_7tm_1,superfamily_SSF81321
TEP1	7011	genome.wustl.edu	37	14	20846234	20846234	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007110.4	-1	reviewed	p.A1890	0.026	145	0%	127	30.7%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TEP1	7011	genome.wustl.edu	37	14	20873623	20873623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007110.4	-1	reviewed	p.E286A	1.000	449	0.2%	352	14.8%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_TROVE
TMEM55B	90809	genome.wustl.edu	37	14	20928903	20928903	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100814.1	-1	validated	p.I89L	0.997	70	0%	68	33.8%	26	26.9%	benign(0.393)	deleterious(0.02)	deleterious(0.509)	HMMPfam_Tmemb_55A
RNASE4	6038	genome.wustl.edu	37	14	21167775	21167775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002937.3	+1	reviewed	p.R82H	0.001	418	0.5%	438	30.1%	6	0%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
EDDM3A	10876	genome.wustl.edu	37	14	21215869	21215869	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006683.4	+1	validated	p.E44*	0.014	164	0%	142	33.1%	0	-	-	-	-	superfamily_RNaseA
ENSG00000246096	0	genome.wustl.edu	37	14	21464260	21464260	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000500338	-1	known	NULL	0.000	274	0%	318	35.5%	1	0%	-	-	-	-
RPGRIP1	57096	genome.wustl.edu	37	14	21789496	21789496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020366.3	+1	reviewed	p.T516P	0.683	218	0%	165	38.2%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
SUPT16H	11198	genome.wustl.edu	37	14	21840162	21840162	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007192.3	-1	reviewed	p.V67	1.000	98	0%	119	25.2%	15	33.3%	-	-	-	NULL
CHD8	57680	genome.wustl.edu	37	14	21896124	21896124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020920.3	-1	reviewed	p.R223H	1.000	218	0%	166	30.1%	2	0%	probably_damaging(0.98)	tolerated(0.11)	deleterious(0.696)	NULL
RAB2B	84932	genome.wustl.edu	37	14	21943026	21943026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000431740	-1	known	p.R12Q	1.000	74	0%	67	28.4%	0	-	-	-	-	HMMPfam_Ras,superfamily_SSF52540
TOX4	9878	genome.wustl.edu	37	14	21956841	21956841	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014828.2	+1	validated	p.G137	0.954	152	0%	155	29%	33	36.3%	-	-	-	NULL
SALL2	6297	genome.wustl.edu	37	14	21991122	21991122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005407.1	-1	validated	p.E914K	1.000	119	0%	126	27.8%	2	50%	benign(0.074)	tolerated(0.09)	neutral(0.301)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR4E2	26686	genome.wustl.edu	37	14	22133805	22133805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001912.1	+1	validated	p.G170D	0.999	290	0%	258	29.8%	0	-	possibly_damaging(0.639)	deleterious(0)	deleterious(0.668)	HMMPfam_7tm_1,superfamily_SSF81321
DAD1	1603	genome.wustl.edu	37	14	23057900	23057900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001344.2	-1	reviewed	p.S55Y	1.000	161	0%	121	24.8%	545	39.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_DAD
ABHD4	63874	genome.wustl.edu	37	14	23078709	23078709	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022060.2	+1	validated	p.R278*	1.000	102	1%	90	25.6%	10	0%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
SLC7A7	9056	genome.wustl.edu	37	14	23248127	23248127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001126105.1	-1	reviewed	p.E215D	1.000	158	0%	145	35.2%	18	0%	benign(0.011)	tolerated(0.25)	neutral(0.037)	HMMPfam_AA_permease
C14orf93	60686	genome.wustl.edu	37	14	23467895	23467895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130706.1	-1	validated	p.E113G	0.022	104	0%	98	37.8%	5	40%	benign(0.042)	tolerated(0.06)	neutral(0.325)	NULL
PSMB11	122706	genome.wustl.edu	37	14	23512080	23512080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099780.1	+1	validated	p.D216Y	1.000	39	0%	48	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Proteasome,superfamily_SSF56235
CEBPE	1053	genome.wustl.edu	37	14	23586892	23586892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001805.2	-1	reviewed	p.A217V	1.000	86	0%	72	20.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_BRLZ,HMMPfam_bZIP_2
SLC22A17	51310	genome.wustl.edu	37	14	23816824	23816824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020372.2	-1	provisional	p.F354S	1.000	39	0%	31	29%	15	0%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
CMTM5	116173	genome.wustl.edu	37	14	23847691	23847691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138460.2	+1	reviewed	p.R87Q	0.971	210	0%	167	32.3%	0	-	probably_damaging(0.994)	tolerated(0.29)	deleterious(0.481)	HMMPfam_MARVEL
MYH6	4624	genome.wustl.edu	37	14	23851654	23851654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002471.3	-1	validated	p.R1927C	1.000	108	0%	119	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
MYH6	4624	genome.wustl.edu	37	14	23867951	23867951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002471.3	-1	validated	p.A626V	1.000	54	0%	55	25.5%	0	-	benign(0.017)	tolerated(0.61)	neutral(0.005)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
JPH4	84502	genome.wustl.edu	37	14	24041119	24041119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032452.2	-1	reviewed	p.A388T	0.999	176	0%	187	32.1%	0	-	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
LRRC16B	90668	genome.wustl.edu	37	14	24529254	24529254	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138360.3	+1	validated	p.T648	0.136	59	0%	36	36.1%	0	-	-	-	-	NULL
PSME2	5721	genome.wustl.edu	37	14	24614958	24614958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002818.2	-1	reviewed	p.F35L	0.970	49	0%	46	21.7%	308	38.9%	benign(0.311)	tolerated(0.28)	neutral(0.129)	HMMPfam_PA28_alpha,superfamily_Prot_act_regA
RNF31	55072	genome.wustl.edu	37	14	24617318	24617318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017999.4	+1	validated	p.V109A	1.000	63	0%	65	20%	10	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PUB
IRF9	10379	genome.wustl.edu	37	14	24631382	24631382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006084.4	+1	validated	p.R10Q	1.000	217	0%	174	27.6%	24	20.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_IRF,HMMSmart_IRF
IPO4	79711	genome.wustl.edu	37	14	24649767	24649767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024658.3	-1	validated	p.A1043T	0.004	22	0%	23	21.7%	130	43.8%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
RIPK3	11035	genome.wustl.edu	37	14	24808508	24808508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006871.3	-1	reviewed	p.K62E	0.626	147	0%	169	24.3%	1	0%	benign(0.019)	tolerated(0.85)	neutral(0.002)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NYNRIN	57523	genome.wustl.edu	37	14	24877485	24877485	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025081.2	+1	validated	p.I203	0.864	72	0%	60	25%	2	100%	-	-	-	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24878867	24878867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025081.2	+1	validated	p.K623E	0.001	67	0%	55	27.3%	5	0%	benign(0.007)	deleterious(0.01)	neutral(0.406)	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24879270	24879270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025081.2	+1	validated	p.R757H	0.001	76	0%	58	27.6%	4	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24883907	24883907	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025081.2	+1	validated	p.E984	0.250	61	0%	57	26.3%	9	44.4%	-	-	-	NULL
KHNYN	23351	genome.wustl.edu	37	14	24900727	24900727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015299.2	+1	validated	p.K87R	0.014	76	0%	53	20.8%	11	36.3%	benign(0.003)	tolerated(0.57)	neutral(0.006)	NULL
GZMB	3002	genome.wustl.edu	37	14	25101153	25101153	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004131.4	-1	reviewed	p.R171*	0.000	176	0%	126	35.7%	49	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
STXBP6	29091	genome.wustl.edu	37	14	25288250	25288250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014178.6	-1	provisional	p.A201V	1.000	281	0%	200	15.5%	62	17.7%	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
STXBP6	29091	genome.wustl.edu	37	14	25326244	25326244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014178.6	-1	provisional	p.D92N	0.997	289	0%	237	27.4%	67	40.2%	benign(0.082)	tolerated(0.2)	neutral(0.055)	NULL
FOXG1	2290	genome.wustl.edu	37	14	29237598	29237598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005249.3	+1	reviewed	p.E371D	1.000	43	0%	37	37.8%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
FOXG1	2290	genome.wustl.edu	37	14	29237757	29237757	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005249.3	+1	reviewed	p.P424	1.000	40	0%	46	10.9%	0	-	-	-	-	NULL
G2E3	55632	genome.wustl.edu	37	14	31074877	31074877	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017769.3	+1	validated	p.A393P	0.036	77	0%	97	35.1%	2	50%	benign(0.038)	tolerated(0.23)	neutral(0.044)	superfamily_HECT
ENSG00000250370	0	genome.wustl.edu	37	14	31358704	31358704	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000503907	-1	known	NULL	0.007	33	3%	35	25.7%	0	-	-	-	-	-
HECTD1	25831	genome.wustl.edu	37	14	31602757	31602757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015382.2	-1	validated	p.E1235K	1.000	148	0%	127	31.5%	8	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Galactose-binding domain-like,HMMPfam_Sad1_UNC
HECTD1	25831	genome.wustl.edu	37	14	31618360	31618360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015382.2	-1	validated	p.R721Q	1.000	71	0%	66	28.8%	5	80%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31844080	31844080	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015473.2	-1	validated	p.S308	0.062	79	0%	70	40%	3	0%	-	-	-	superfamily_ARM repeat
NUBPL	80224	genome.wustl.edu	37	14	32034245	32034245	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025152.2	+1	validated	p.A94	0.415	144	0%	74	25.7%	1	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGAP5	394	genome.wustl.edu	37	14	32560274	32560274	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001030055.1	+1	reviewed	p.I133M	1.000	192	0%	195	35.9%	2	0%	possibly_damaging(0.558)	deleterious(0.01)	deleterious(0.596)	HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGAP5	394	genome.wustl.edu	37	14	32562634	32562634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001030055.1	+1	reviewed	p.S920F	1.000	228	0%	215	31.6%	12	16.6%	benign(0.361)	deleterious(0.01)	deleterious(0.520)	NULL
ARHGAP5	394	genome.wustl.edu	37	14	32562938	32562938	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001030055.1	+1	reviewed	p.I1021M	1.000	286	0%	308	37.3%	3	33.3%	benign(0.016)	tolerated(0.05)	neutral(0.346)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33068648	33068648	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004274.4	+1	reviewed	p.A834	1.000	186	0%	166	27.7%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
AKAP6	9472	genome.wustl.edu	37	14	33293435	33293435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004274.4	+1	reviewed	p.L2139P	0.000	216	0%	195	32.3%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
EAPP	55837	genome.wustl.edu	37	14	35002731	35002731	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018453.3	-1	reviewed	p.N91H	0.971	200	0%	192	24%	41	43.9%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
CFL2	1073	genome.wustl.edu	37	14	35182678	35182678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021914.7	-1	reviewed	p.K31N	1.000	91	0%	99	32.3%	5	20%	possibly_damaging(0.793)	deleterious(0)	deleterious(0.742)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
BAZ1A	11177	genome.wustl.edu	37	14	35245200	35245200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013448.2	-1	validated	p.E920K	1.000	135	0%	143	32.2%	3	66.6%	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35245464	35245464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013448.2	-1	validated	p.L832I	1.000	198	0%	167	35.3%	6	16.6%	probably_damaging(0.999)	tolerated(0.5)	deleterious(0.500)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35331346	35331346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013448.2	-1	validated	p.S99L	1.000	377	0%	363	14.6%	3	33.3%	possibly_damaging(0.556)	tolerated(0.12)	neutral(0.450)	HMMPfam_WAC_Acf1_DNA_bd
RALGAPA1	253959	genome.wustl.edu	37	14	36207825	36207825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194301.2	-1	provisional	p.R494Q	1.000	346	0%	282	31.9%	2	100%	possibly_damaging(0.902)	tolerated(0.12)	deleterious(0.617)	NULL
MBIP	51562	genome.wustl.edu	37	14	36777365	36777365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016586.2	-1	validated	p.R274I	1.000	384	0%	254	17.7%	36	13.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000188831	0	genome.wustl.edu	37	14	36840940	36840940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000340350	+1	known	p.R108C	0.001	262	0%	208	32.2%	0	-	-	-	-	NULL
TTC6	319089	genome.wustl.edu	37	14	38277971	38277971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343299.1	+1	model	p.A1225T	0.847	420	0%	303	28.4%	0	-	possibly_damaging(0.639)	deleterious(0.02)	deleterious(0.607)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SSTR1	6751	genome.wustl.edu	37	14	38678947	38678947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001049.2	+1	reviewed	p.T118M	0.984	157	0%	143	26.6%	0	-	possibly_damaging(0.892)	tolerated(0.22)	neutral(0.393)	HMMPfam_7tm_1,superfamily_SSF81321
CLEC14A	161198	genome.wustl.edu	37	14	38724135	38724135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175060.1	-1	provisional	p.E365K	0.000	113	0%	64	18.8%	14	0%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
CLEC14A	161198	genome.wustl.edu	37	14	38724258	38724258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175060.1	-1	provisional	p.D324N	0.000	135	0%	70	21.4%	15	0%	benign(0.006)	tolerated(0.97)	-	NULL
CLEC14A	161198	genome.wustl.edu	37	14	38724544	38724544	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175060.1	-1	provisional	p.A228	0.004	140	0%	71	22.5%	8	0%	-	-	-	NULL
SEC23A	10484	genome.wustl.edu	37	14	39543712	39543712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006364.2	-1	reviewed	p.R337Q	1.000	252	0%	228	32%	17	23.5%	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995
SEC23A	10484	genome.wustl.edu	37	14	39565307	39565307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006364.2	-1	reviewed	p.E6K	1.000	139	0%	168	31.5%	6	33.3%	possibly_damaging(0.568)	deleterious(0.01)	deleterious(0.600)	NULL
TRAPPC6B	122553	genome.wustl.edu	37	14	39627569	39627569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079537.1	-1	validated	p.D63Y	1.000	119	0%	96	30.2%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TRAPP
PNN	5411	genome.wustl.edu	37	14	39650142	39650142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002687.3	+1	validated	p.R410Q	1.000	176	0%	164	29.3%	27	37%	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
LRFN5	145581	genome.wustl.edu	37	14	42356018	42356018	+	Missense_Mutation	SNP	A	A	G	rs185649544	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152447.3	+1	validated	p.T64A	1.000	73	0%	78	21.8%	0	-	probably_damaging(0.966)	tolerated(0.68)	neutral(0.410)	superfamily_SSF52058
LRFN5	145581	genome.wustl.edu	37	14	42360923	42360923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152447.3	+1	validated	p.S619N	1.000	98	0%	81	24.7%	0	-	benign(0.042)	tolerated(0.07)	neutral(0.322)	NULL
FSCB	84075	genome.wustl.edu	37	14	44974442	44974442	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032135.3	-1	validated	p.E583	0.004	104	0%	61	9.8%	0	-	-	-	-	NULL
FSCB	84075	genome.wustl.edu	37	14	44974786	44974786	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032135.3	-1	validated	p.E469*	0.990	70	0%	69	29%	0	-	-	-	-	NULL
KLHL28	54813	genome.wustl.edu	37	14	45414967	45414967	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017658.3	-1	validated	p.S55	1.000	136	0%	179	29.1%	2	0%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
FAM179B	23116	genome.wustl.edu	37	14	45465037	45465037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015091.2	+1	validated	p.R712I	1.000	76	0%	60	10%	0	-	possibly_damaging(0.628)	deleterious(0)	deleterious(0.663)	superfamily_ARM repeat
FAM179B	23116	genome.wustl.edu	37	14	45542618	45542618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015091.2	+1	validated	p.N1673H	1.000	85	0%	82	20.7%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
PRPF39	55015	genome.wustl.edu	37	14	45579845	45579845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017922.3	+1	validated	p.R466Q	1.000	26	0%	16	37.5%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
FANCM	57697	genome.wustl.edu	37	14	45645098	45645098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020937.2	+1	reviewed	p.Q1047H	0.039	88	0%	99	35.4%	0	-	possibly_damaging(0.824)	deleterious(0)	deleterious(0.756)	NULL
FANCM	57697	genome.wustl.edu	37	14	45658176	45658176	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020937.2	+1	reviewed	p.E1651*	0.137	199	0%	166	27.7%	5	0%	-	-	-	NULL
FANCM	57697	genome.wustl.edu	37	14	45667995	45667995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020937.2	+1	reviewed	p.K1955N	1.000	227	0%	165	25.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Restriction endonuclease-like
MIS18BP1	55320	genome.wustl.edu	37	14	45716349	45716349	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018353.4	-1	validated	p.K47N	1.000	156	0%	99	27.3%	2	0%	benign(0.399)	deleterious(0)	deleterious(0.573)	NULL
RPL10L	140801	genome.wustl.edu	37	14	47120881	47120881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080746.2	-1	reviewed	p.S20Y	1.000	114	0%	94	35.1%	0	-	benign(0.313)	deleterious(0)	deleterious(0.542)	HMMPfam_Ribosomal_L16,superfamily_Ribosomal_L10e/L16
LOC100289583	100289583	genome.wustl.edu	37	14	47120968	47120968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343274.1	+1	model	p.R213Q	0.000	58	0%	60	48.3%	0	-	-	-	-	NULL
MDGA2	161357	genome.wustl.edu	37	14	47566317	47566317	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113498.1	-1	validated	p.S243*	1.000	286	0.3%	181	25.4%	0	-	-	-	-	superfamily_SSF48726
LRR1	122769	genome.wustl.edu	37	14	50080985	50080985	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152329.3	+1	reviewed	p.G339A	0.999	96	0%	97	25.8%	30	40%	benign(0.016)	tolerated(0.73)	neutral(0.002)	NULL
DNAAF2	55172	genome.wustl.edu	37	14	50092460	50092460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018139.2	-1	reviewed	p.E772K	0.075	122	0%	74	16.2%	24	25%	possibly_damaging(0.796)	deleterious(0)	deleterious(0.744)	NULL
DNAAF2	55172	genome.wustl.edu	37	14	50100274	50100274	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018139.2	-1	reviewed	p.E532*	0.666	40	0%	33	48.5%	23	39.1%	-	-	-	NULL
POLE2	5427	genome.wustl.edu	37	14	50118023	50118023	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002692.2	-1	provisional	p.V428	1.000	55	0%	49	36.7%	9	66.6%	-	-	-	HMMPfam_DNA_pol_E_B
C14orf182	283551	genome.wustl.edu	37	14	50459558	50459558	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012706.1	-1	validated	p.L80	0.000	73	0%	55	23.6%	0	-	-	-	-	NULL
SOS2	6655	genome.wustl.edu	37	14	50611982	50611982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006939.2	-1	validated	p.Q858R	1.000	152	0%	133	37.6%	1	0%	possibly_damaging(0.949)	tolerated(0.07)	deleterious(0.712)	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
SOS2	6655	genome.wustl.edu	37	14	50612229	50612229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006939.2	-1	validated	p.R824C	1.000	105	0%	120	25.8%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
SOS2	6655	genome.wustl.edu	37	14	50626281	50626281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006939.2	-1	validated	p.R574S	1.000	261	0%	212	36.8%	5	0%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	superfamily_Ras_GEF
SOS2	6655	genome.wustl.edu	37	14	50626742	50626742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006939.2	-1	validated	p.M420T	1.000	294	0%	214	34.6%	2	0%	benign(0.002)	tolerated(0.05)	neutral(0.345)	superfamily_SSF50729
L2HGDH	79944	genome.wustl.edu	37	14	50713876	50713876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024884.2	-1	reviewed	p.R431H	0.984	98	0%	88	30.7%	5	60%	possibly_damaging(0.736)	tolerated(0.1)	deleterious(0.555)	HMMPfam_DAO
CDKL1	8814	genome.wustl.edu	37	14	50809647	50809647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356146	-1	known	p.T786A	1.000	43	0%	38	23.7%	0	-	-	-	-	superfamily_Kinase_like
CDKL1	8814	genome.wustl.edu	37	14	50845126	50845126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356146	-1	known	p.P375S	0.001	88	0%	61	31.1%	0	-	-	-	-	NULL
ATL1	51062	genome.wustl.edu	37	14	51099045	51099045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015915.4	+1	reviewed	p.K555N	1.000	95	0%	70	30%	11	27.2%	unknown(0)	tolerated(0.32)	-	NULL
NIN	51199	genome.wustl.edu	37	14	51224712	51224712	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020921.3	-1	reviewed	p.I1012	1.000	271	0.4%	295	32.9%	0	-	-	-	-	NULL
TRIM9	114088	genome.wustl.edu	37	14	51477173	51477173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015163.5	-1	reviewed	p.R361C	1.000	210	0%	168	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00502
TRIM9	114088	genome.wustl.edu	37	14	51561052	51561052	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015163.5	-1	reviewed	p.G202	0.029	33	0%	28	28.6%	0	-	-	-	-	HMMSmart_SM00336
FRMD6	122786	genome.wustl.edu	37	14	52156616	52156616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042481.1	+1	validated	p.F21S	1.000	59	0%	71	32.4%	2	0%	probably_damaging(0.985)	tolerated(0.07)	deleterious(0.751)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
C14orf166	51637	genome.wustl.edu	37	14	52460480	52460480	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016039.2	+1	validated	p.R76*	1.000	80	0%	85	29.4%	102	4.9%	-	-	-	HMMPfam_RLL
NID2	22795	genome.wustl.edu	37	14	52521022	52521022	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007361.3	-1	validated	p.I262S	0.060	136	0%	99	22.2%	17	0%	benign(0.061)	tolerated(0.54)	neutral(0.011)	HMMPfam_NIDO,HMMSmart_SM00539
PTGDR	5729	genome.wustl.edu	37	14	52735205	52735205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000953.2	+1	reviewed	p.L225I	1.000	52	0%	36	33.3%	0	-	possibly_damaging(0.864)	tolerated(0.09)	deleterious(0.631)	HMMPfam_7tm_1,superfamily_SSF81321
PSMC6	5706	genome.wustl.edu	37	14	53175535	53175535	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002806.3	+1	reviewed	e4+1	1.000	106	0%	102	23.5%	0	-	-	-	-	-
FERMT2	10979	genome.wustl.edu	37	14	53417216	53417216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134999.1	-1	validated	p.V24A	1.000	90	0%	60	43.3%	14	21.4%	possibly_damaging(0.866)	deleterious(0)	deleterious(0.780)	NULL
SAMD4A	23034	genome.wustl.edu	37	14	55168990	55168990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015589.4	+1	validated	p.S135L	1.000	114	0.9%	112	31.2%	7	85.7%	benign(0.123)	tolerated(0.11)	neutral(0.282)	NULL
LGALS3	3958	genome.wustl.edu	37	14	55612068	55612068	+	RNA	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_003225.2	+1	reviewed	NULL	0.076	61	0%	61	18%	501	25.7%	-	-	-	-
DLGAP5	9787	genome.wustl.edu	37	14	55636262	55636262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014750.4	-1	validated	p.R468H	1.000	146	0%	125	24.8%	19	47.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GKAP
DLGAP5	9787	genome.wustl.edu	37	14	55646413	55646413	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014750.4	-1	validated	p.N236	0.957	109	0%	88	26.1%	14	14.2%	-	-	-	NULL
KTN1	3895	genome.wustl.edu	37	14	56128290	56128290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079521.1	+1	validated	p.S1017Y	0.191	140	0%	116	28.4%	60	40%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	NULL
EXOC5	10640	genome.wustl.edu	37	14	57675417	57675417	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006544.3	-1	reviewed	p.Q679	1.000	231	0%	188	32.4%	35	40%	-	-	-	HMMPfam_Sec10
MUDENG	55745	genome.wustl.edu	37	14	57741091	57741091	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018229.3	+1	validated	p.F68	0.018	76	0%	87	24.1%	17	41.1%	-	-	-	NULL
C14orf37	145407	genome.wustl.edu	37	14	58471797	58471797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001872.2	-1	predicted	p.R742M	1.000	167	0%	123	38.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C14orf37	145407	genome.wustl.edu	37	14	58604792	58604792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001872.2	-1	predicted	p.D429N	0.000	149	0%	155	30.3%	0	-	benign(0)	tolerated(0.98)	-	NULL
PSMA3	5684	genome.wustl.edu	37	14	58737155	58737155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002788.2	+1	reviewed	p.E204K	1.000	144	0%	145	31%	221	37.5%	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ARID4A	5926	genome.wustl.edu	37	14	58795016	58795016	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002892.3	+1	reviewed	p.S215*	1.000	123	0%	80	26.3%	0	-	-	-	-	HMMPfam_RBB1NT
ARID4A	5926	genome.wustl.edu	37	14	58796297	58796297	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002892.3	+1	reviewed	p.P238	0.600	136	0%	92	28.3%	1	0%	-	-	-	HMMPfam_RBB1NT
TOMM20L	387990	genome.wustl.edu	37	14	58874094	58874094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207377.2	+1	validated	p.E105K	0.828	118	0%	105	26.7%	1	0%	benign(0.011)	deleterious(0.03)	neutral(0.365)	HMMPfam_MAS20,superfamily_MAS20_rcpt
DACT1	51339	genome.wustl.edu	37	14	59112000	59112000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016651.5	+1	validated	p.K220T	0.989	107	0%	74	28.4%	1	0%	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
DACT1	51339	genome.wustl.edu	37	14	59112525	59112525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016651.5	+1	validated	p.S395L	0.861	118	0%	86	33.7%	7	0%	benign(0.167)	deleterious(0.01)	neutral(0.421)	NULL
DACT1	51339	genome.wustl.edu	37	14	59112997	59112997	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016651.5	+1	validated	p.A552	0.007	79	0%	54	29.6%	5	0%	-	-	-	NULL
DAAM1	23002	genome.wustl.edu	37	14	59827539	59827539	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014992.1	+1	reviewed	p.E895*	1.000	135	0%	108	26.9%	6	0%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
JKAMP	51528	genome.wustl.edu	37	14	59961845	59961845	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016475.3	+1	validated	p.R121*	1.000	115	0%	89	28.1%	24	16.6%	-	-	-	HMMPfam_DUF766
JKAMP	51528	genome.wustl.edu	37	14	59970624	59970624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016475.3	+1	validated	p.H257R	1.000	266	0%	161	29.2%	24	4.1%	possibly_damaging(0.9)	deleterious(0.04)	deleterious(0.706)	HMMPfam_DUF766
C14orf135	64430	genome.wustl.edu	37	14	60592519	60592519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022495.5	+1	validated	p.S848F	1.000	71	0%	48	31.2%	11	27.2%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_Pecanex_C
C14orf39	317761	genome.wustl.edu	37	14	60936271	60936271	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174978.2	-1	validated	p.E219*	1.000	78	0%	56	23.2%	0	-	-	-	-	NULL
SIX1	6495	genome.wustl.edu	37	14	61113285	61113285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005982.3	-1	reviewed	p.E191K	1.000	52	0%	34	47.1%	5	40%	benign(0.35)	deleterious(0)	deleterious(0.555)	superfamily_Homeodomain-like
SIX4	51804	genome.wustl.edu	37	14	61190738	61190738	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017420.4	-1	reviewed	p.E19*	1.000	122	0%	127	22%	0	-	-	-	-	NULL
TRMT5	57570	genome.wustl.edu	37	14	61446356	61446356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020810.2	-1	validated	p.R87I	1.000	252	0%	202	30.2%	17	23.5%	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	NULL
PRKCH	5583	genome.wustl.edu	37	14	61917577	61917577	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006255.3	+1	reviewed	p.F240	0.983	311	0.6%	322	25.5%	2	0%	-	-	-	superfamily_Cysteine-rich domain
PRKCH	5583	genome.wustl.edu	37	14	61952330	61952330	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006255.3	+1	reviewed	p.I463	1.000	336	0%	244	31.6%	2	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HIF1A	3091	genome.wustl.edu	37	14	62207257	62207257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001530.3	+1	validated	p.D524G	1.000	115	0.9%	114	36.8%	62	37%	possibly_damaging(0.857)	deleterious(0.01)	deleterious(0.737)	NULL
HIF1A	3091	genome.wustl.edu	37	14	62207545	62207545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001530.3	+1	validated	p.D578N	0.999	232	0%	228	33.8%	100	39%	possibly_damaging(0.461)	tolerated(0.66)	neutral(0.153)	NULL
SYT16	83851	genome.wustl.edu	37	14	62462909	62462909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031914.2	+1	validated	p.D58Y	0.909	494	0%	444	32%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
SYT16	83851	genome.wustl.edu	37	14	62536533	62536533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031914.2	+1	validated	p.D246Y	1.000	189	0%	234	27.4%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63174573	63174573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139318.3	-1	reviewed	p.R874C	1.000	162	0%	163	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63447706	63447706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139318.3	-1	reviewed	p.E276K	1.000	235	0%	170	27.6%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RHOJ	57381	genome.wustl.edu	37	14	63747757	63747757	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020663.3	+1	provisional	p.V102	0.749	197	0%	135	32.6%	3	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RHOJ	57381	genome.wustl.edu	37	14	63757598	63757598	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020663.3	+1	provisional	p.I167	0.003	133	0%	110	26.4%	2	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SYNE2	23224	genome.wustl.edu	37	14	64679609	64679609	+	Silent	SNP	C	C	T	rs146572710	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182914.2	+1	reviewed	p.S6314	0.957	91	0%	80	21.2%	14	42.8%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ZBTB25	7597	genome.wustl.edu	37	14	64953667	64953667	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006977.2	-1	validated	p.N428H	1.000	88	0%	85	30.6%	2	0%	benign(0.057)	tolerated(0.1)	neutral(0.290)	NULL
LOC100287214	100287214	genome.wustl.edu	37	14	65008428	65008428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343281.1	-1	model	p.D256N	1.000	11	0%	15	26.7%	21	33.3%	-	-	-	HMMPfam_NAD-GH
PPP1R36	145376	genome.wustl.edu	37	14	65056030	65056030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172365.1	+1	predicted	p.S415A	0.000	164	0%	160	26.9%	1	0%	benign(0.009)	tolerated(0.28)	neutral(0.032)	NULL
SPTB	6710	genome.wustl.edu	37	14	65253410	65253410	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024858.2	-1	reviewed	p.E1091D	0.972	53	0%	49	14.3%	1	0%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTB	6710	genome.wustl.edu	37	14	65262201	65262201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024858.2	-1	reviewed	p.T500A	0.935	87	0%	81	27.2%	2	0%	benign(0.004)	tolerated(0.84)	neutral(0.001)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTB	6710	genome.wustl.edu	37	14	65267519	65267519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001024858.2	-1	reviewed	p.F277L	1.000	97	0%	70	28.6%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_CH,superfamily_Calponin-homology
RAB15	376267	genome.wustl.edu	37	14	65415099	65415099	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000436278	-1	known	p.A204	0.009	50	0%	60	45%	6	33.3%	-	-	-	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPHN	10243	genome.wustl.edu	37	14	67525414	67525414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020806.4	+1	reviewed	p.S352Y	1.000	351	0%	294	23.5%	6	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_MoeA_N
GPHN	10243	genome.wustl.edu	37	14	67631930	67631930	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020806.4	+1	reviewed	p.I654	0.997	90	0%	96	32.3%	13	53.8%	-	-	-	HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth
GPHN	10243	genome.wustl.edu	37	14	67647618	67647618	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020806.4	+1	reviewed	p.G758	1.000	63	0%	36	25%	11	0%	-	-	-	HMMPfam_MoeA_C,superfamily_MoeA_C
MPP5	64398	genome.wustl.edu	37	14	67769220	67769220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022474.2	+1	validated	p.D299N	1.000	224	0%	142	23.2%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PIGH	5283	genome.wustl.edu	37	14	68060665	68060665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004569.3	-1	reviewed	p.S62I	1.000	21	0%	37	24.3%	11	54.5%	probably_damaging(0.979)	tolerated(0.14)	deleterious(0.671)	NULL
RDH12	145226	genome.wustl.edu	37	14	68200518	68200518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152443.2	+1	reviewed	p.R302C	1.000	71	0%	63	31.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68264796	68264796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015346.3	-1	reviewed	p.R728Q	0.981	141	0%	108	27.8%	4	0%	benign(0.006)	tolerated(0.28)	neutral(0.032)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68280704	68280704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015346.3	-1	reviewed	p.K91T	1.000	87	0%	70	31.4%	0	-	possibly_damaging(0.811)	deleterious(0)	deleterious(0.750)	NULL
RAD51B	5890	genome.wustl.edu	37	14	69117548	69117548	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390683	+1	known	p.E363*	0.049	46	0%	28	21.4%	0	-	-	-	-	NULL
ACTN1	87	genome.wustl.edu	37	14	69376040	69376040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130004.1	-1	reviewed	p.R197W	1.000	96	0%	59	30.5%	201	26.3%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
EXD2	55218	genome.wustl.edu	37	14	69707797	69707797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018199.2	+1	provisional	p.L491I	0.997	80	0%	90	38.9%	12	25%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
SRSF5	6430	genome.wustl.edu	37	14	70235375	70235375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039465.1	+1	validated	p.E61*	1.000	110	0%	117	29.1%	74	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SMOC1	64093	genome.wustl.edu	37	14	70444659	70444659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001034852.1	+1	validated	p.S168N	1.000	199	0%	176	31.8%	0	-	benign(0.017)	tolerated(0.41)	neutral(0.015)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72128059	72128059	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015556.1	+1	provisional	p.I710	0.710	127	0%	101	27.7%	12	25%	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
RGS6	9628	genome.wustl.edu	37	14	72936746	72936746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004296.4	+1	validated	p.A164V	1.000	134	0%	105	29.5%	0	-	possibly_damaging(0.659)	tolerated(0.06)	deleterious(0.555)	NULL
RGS6	9628	genome.wustl.edu	37	14	72944991	72944991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004296.4	+1	validated	p.A270T	0.806	89	0%	61	29.5%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
RGS6	9628	genome.wustl.edu	37	14	72985208	72985208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004296.4	+1	validated	p.V414G	1.000	134	0%	104	30.8%	0	-	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS6	9628	genome.wustl.edu	37	14	73007307	73007307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000406236	+1	known	p.R345W	0.000	28	0%	23	17.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
DPF3	8110	genome.wustl.edu	37	14	73141066	73141066	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012074.3	-1	provisional	p.G251	1.000	23	0%	12	41.7%	0	-	-	-	-	NULL
DPF3	8110	genome.wustl.edu	37	14	73238525	73238525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012074.3	-1	provisional	p.V37M	1.000	140	0%	94	33%	0	-	benign(0.194)	tolerated(0.25)	neutral(0.055)	NULL
DCAF4	26094	genome.wustl.edu	37	14	73409754	73409754	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015604.3	+1	reviewed	p.R162*	1.000	79	0%	59	27.1%	1	100%	-	-	-	superfamily_WD40 repeat-like
RBM25	58517	genome.wustl.edu	37	14	73572736	73572736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021239.2	+1	validated	p.E442K	1.000	570	0.2%	663	30.5%	15	60%	unknown(0)	deleterious(0)	-	NULL
PAPLN	89932	genome.wustl.edu	37	14	73717620	73717620	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173462.3	+1	validated	p.V157	0.494	56	0%	33	15.2%	0	-	-	-	-	NULL
NUMB	8650	genome.wustl.edu	37	14	73789885	73789885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005743.1	-1	reviewed	p.S52P	1.000	112	0%	80	28.7%	14	28.5%	probably_damaging(0.985)	tolerated(0.1)	deleterious(0.718)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
ALDH6A1	4329	genome.wustl.edu	37	14	74538608	74538608	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005589.2	-1	reviewed	p.R140*	1.000	210	0%	183	27.3%	1	0%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
VRTN	55237	genome.wustl.edu	37	14	74823858	74823858	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018228.2	+1	validated	p.I124	0.838	54	0%	43	27.9%	0	-	-	-	-	NULL
SYNDIG1L	646658	genome.wustl.edu	37	14	74874676	74874676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105579.1	-1	validated	p.T145M	0.858	50	0%	37	32.4%	1	100%	possibly_damaging(0.884)	deleterious(0)	deleterious(0.789)	HMMPfam_CD225
YLPM1	56252	genome.wustl.edu	37	14	75265172	75265172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019589.2	+1	validated	p.R1058W	0.074	237	0%	222	28.4%	11	81.8%	possibly_damaging(0.702)	deleterious(0)	deleterious(0.697)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75266120	75266120	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019589.2	+1	validated	p.R1374*	1.000	676	0.3%	800	31.8%	10	0%	-	-	-	NULL
YLPM1	56252	genome.wustl.edu	37	14	75282961	75282961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019589.2	+1	validated	p.L1853R	1.000	47	0%	46	41.3%	24	87.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PROX2	283571	genome.wustl.edu	37	14	75321889	75321889	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080408.1	-1	provisional	p.S575	0.984	29	0%	26	30.8%	0	-	-	-	-	HMMPfam_Prox1,superfamily_Homeodomain-like
PROX2	283571	genome.wustl.edu	37	14	75327925	75327925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080408.1	-1	provisional	p.L434V	0.008	150	0%	141	34%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Prox1
PROX2	283571	genome.wustl.edu	37	14	75330524	75330524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080408.1	-1	provisional	p.S5F	0.000	75	0%	102	20.6%	0	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	NULL
DLST	1743	genome.wustl.edu	37	14	75360102	75360102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001933.4	+1	validated	p.G216D	1.000	135	0%	128	32%	62	40.3%	benign(0.212)	tolerated(0.62)	neutral(0.025)	NULL
DLST	1743	genome.wustl.edu	37	14	75365141	75365141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001933.4	+1	validated	p.F280L	1.000	87	0%	68	36.8%	46	21.7%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases
MLH3	27030	genome.wustl.edu	37	14	75505093	75505093	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040108.1	-1	reviewed	p.K1198T	1.000	158	0%	132	31.1%	9	55.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MLH3	27030	genome.wustl.edu	37	14	75514896	75514896	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040108.1	-1	reviewed	p.K488T	0.472	185	0%	186	30.6%	1	100%	unknown(0)	deleterious(0)	-	NULL
NEK9	91754	genome.wustl.edu	37	14	75551344	75551344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033116.4	-1	validated	p.E955K	1.000	206	0%	157	36.3%	16	43.7%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
ENSG00000119660	0	genome.wustl.edu	37	14	75759024	75759024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000238638	-1	known	p.A63T	0.000	41	0%	52	21.2%	0	-	possibly_damaging(0.677)	deleterious(0.04)	deleterious(0.590)	NULL
FLVCR2	55640	genome.wustl.edu	37	14	76088433	76088433	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017791.2	+1	validated	p.A227	0.003	402	0.2%	461	31.9%	1	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IFT43	112752	genome.wustl.edu	37	14	76542976	76542976	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052873.2	+1	validated	p.N84	0.000	97	0%	115	42.6%	0	-	-	-	-	NULL
C14orf118	55668	genome.wustl.edu	37	14	76620936	76620936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017926.2	+1	validated	p.R77Q	1.000	100	0%	115	24.3%	5	20%	probably_damaging(0.987)	deleterious(0.05)	deleterious(0.782)	NULL
C14orf118	55668	genome.wustl.edu	37	14	76621107	76621107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017926.2	+1	validated	p.R134Q	1.000	84	0%	98	31.6%	4	50%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
C14orf118	55668	genome.wustl.edu	37	14	76644267	76644267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017972.2	+1	validated	p.R362Q	1.000	148	0%	122	25.4%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
C14orf118	55668	genome.wustl.edu	37	14	76644365	76644365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017926.2	+1	validated	p.I363V	1.000	124	0%	108	32.4%	6	66.6%	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
ANGEL1	23357	genome.wustl.edu	37	14	77275857	77275857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015305.3	-1	validated	p.R65Q	1.000	74	1.4%	73	30.1%	4	0%	possibly_damaging(0.938)	tolerated(0.18)	neutral(0.440)	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77292853	77292853	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194287.2	+1	validated	p.F5	0.003	16	0%	14	35.7%	0	-	-	-	-	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77294701	77294701	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194287.2	+1	validated	p.P52	0.000	79	0%	76	30.3%	0	-	-	-	-	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77311207	77311207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194287.2	+1	validated	p.F230L	1.000	33	0%	30	53.3%	0	-	unknown(0)	tolerated(0.08)	-	HMMPfam_LRR_1,HMMSmart_SM00368,superfamily_RNI-like
IRF2BPL	64207	genome.wustl.edu	37	14	77492930	77492930	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024496.2	-1	validated	p.V402	1.000	29	0%	21	28.6%	55	38.1%	-	-	-	NULL
TMEM63C	57156	genome.wustl.edu	37	14	77715181	77715181	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020431.2	+1	validated	p.A612	0.689	101	1%	103	36.9%	1	0%	-	-	-	HMMPfam_DUF221
POMT2	29954	genome.wustl.edu	37	14	77765877	77765877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013382.5	-1	reviewed	p.R282C	1.000	106	0%	117	17.1%	14	7.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMT
NOXRED1	122945	genome.wustl.edu	37	14	77872366	77872366	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113475.1	-1	validated	p.L265	0.000	110	0%	109	36.7%	0	-	-	-	-	NULL
SPTLC2	9517	genome.wustl.edu	37	14	78045317	78045317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004863.2	-1	validated	p.D155Y	1.000	271	0%	196	27.6%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PyrdxlP-dep_Trfase_major
NRXN3	9369	genome.wustl.edu	37	14	79181173	79181173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004796.4	+1	reviewed	p.D206N	1.000	167	0%	105	38.1%	0	-	benign(0.002)	tolerated(0.43)	neutral(0.013)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN3	9369	genome.wustl.edu	37	14	79434667	79434667	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004796.4	+1	reviewed	p.G667	0.154	128	0%	93	34.4%	0	-	-	-	-	superfamily_ConA_like_lec_gl
DIO2	1734	genome.wustl.edu	37	14	80677658	80677658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007023.2	-1	reviewed	p.R53H	1.000	32	0%	35	37.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_T4_deiodinase
CEP128	145508	genome.wustl.edu	37	14	81227904	81227904	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152446.3	-1	validated	p.R810	0.999	275	0%	207	28.5%	3	33.3%	-	-	-	NULL
CEP128	145508	genome.wustl.edu	37	14	81251822	81251822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152446.3	-1	validated	p.R543Q	1.000	94	0%	95	32.6%	1	0%	unknown(0)	deleterious(0.03)	-	NULL
CEP128	145508	genome.wustl.edu	37	14	81307112	81307112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152446.3	-1	validated	p.A255T	1.000	232	0%	206	23.3%	0	-	possibly_damaging(0.93)	tolerated(0.25)	neutral(0.413)	NULL
CEP128	145508	genome.wustl.edu	37	14	81371212	81371212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152446.3	-1	validated	p.R142Q	0.017	330	0%	257	29.2%	2	0%	benign(0.152)	deleterious(0.03)	neutral(0.378)	NULL
CEP128	145508	genome.wustl.edu	37	14	81372398	81372398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152446.3	-1	validated	p.D88N	1.000	224	0%	188	30.3%	1	100%	benign(0)	tolerated(1)	-	NULL
TSHR	7253	genome.wustl.edu	37	14	81574766	81574766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000369.2	+1	reviewed	p.F221C	1.000	204	0%	169	26.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
SEL1L	6400	genome.wustl.edu	37	14	81969179	81969179	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005065.4	-1	validated	p.A221	1.000	282	0%	278	29.1%	3	0%	-	-	-	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
FLRT2	23768	genome.wustl.edu	37	14	86087995	86087995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013231.4	+1	reviewed	p.F46S	1.000	212	0%	163	27%	1	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
GALC	2581	genome.wustl.edu	37	14	88442730	88442730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000153.2	-1	reviewed	p.E242K	0.976	271	0%	202	22.3%	3	0%	possibly_damaging(0.731)	tolerated(0.16)	neutral(0.327)	HMMPfam_Glyco_hydro_59,superfamily_(Trans)glycosidases
KCNK10	54207	genome.wustl.edu	37	14	88652066	88652066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138317.2	-1	reviewed	p.R482Q	1.000	143	0%	140	28.6%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SPATA7	55812	genome.wustl.edu	37	14	88883139	88883139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018418.4	+1	reviewed	p.R108Q	0.000	292	0%	185	29.2%	3	66.6%	benign(0.001)	tolerated(1)	-	NULL
EML5	161436	genome.wustl.edu	37	14	89154678	89154678	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_183387.2	-1	validated	p.I893	1.000	613	0%	545	24.4%	0	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
TTC8	123016	genome.wustl.edu	37	14	89305849	89305849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144596.2	+1	reviewed	p.E66D	1.000	155	0%	112	27.7%	4	25%	benign(0.081)	tolerated(1)	neutral(0.006)	NULL
KCNK13	56659	genome.wustl.edu	37	14	90651139	90651139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022054.2	+1	reviewed	p.R340H	1.000	67	0%	53	34%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C14orf102	55051	genome.wustl.edu	37	14	90769167	90769167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017970.2	-1	validated	p.K436N	0.998	77	0%	79	35.4%	3	33.3%	possibly_damaging(0.804)	deleterious(0.02)	deleterious(0.685)	HMMPfam_DUF1740,superfamily_Prenyl_trans
RPS6KA5	9252	genome.wustl.edu	37	14	91389511	91389511	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004755.2	-1	validated	p.T216	0.998	172	0%	166	30.1%	1	100%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
C14orf159	80017	genome.wustl.edu	37	14	91655456	91655456	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102368.1	+1	validated	p.I379	0.000	37	0%	39	43.6%	12	16.6%	-	-	-	NULL
SMEK1	55671	genome.wustl.edu	37	14	91942231	91942231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032560.4	-1	validated	p.R397Q	1.000	140	0%	132	29.5%	14	42.8%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_ARM-type_fold
SMEK1	55671	genome.wustl.edu	37	14	91943263	91943263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032560.4	-1	validated	p.R328I	1.000	29	0%	27	40.7%	20	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF625,superfamily_ARM-type_fold
TRIP11	9321	genome.wustl.edu	37	14	92470474	92470474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004239.3	-1	reviewed	p.K1282N	0.318	169	0%	114	33.3%	3	66.6%	possibly_damaging(0.788)	tolerated(0.14)	deleterious(0.544)	NULL
TRIP11	9321	genome.wustl.edu	37	14	92482109	92482109	+	Nonsense_Mutation	SNP	G	G	A	rs186197454	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004239.3	-1	reviewed	p.R252*	1.000	107	0%	95	35.8%	0	-	-	-	-	NULL
ATXN3	4287	genome.wustl.edu	37	14	92547327	92547327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004993.5	-1	reviewed	p.R285Q	1.000	66	0%	66	30.3%	10	60%	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	NULL
SLC24A4	123041	genome.wustl.edu	37	14	92908447	92908447	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153646.2	+1	validated	p.S119	0.762	95	0%	75	33.3%	0	-	-	-	-	HMMPfam_Na_Ca_ex
LGMN	5641	genome.wustl.edu	37	14	93180774	93180774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008530.1	-1	reviewed	p.I143V	0.914	89	0%	52	36.5%	215	44.1%	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_Peptidase_C13
BTBD7	55727	genome.wustl.edu	37	14	93717818	93717818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002860.2	-1	validated	p.E645K	1.000	426	0%	304	33.2%	2	50%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93761138	93761138	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002860.2	-1	validated	p.S76	0.412	161	0%	162	28.4%	1	100%	-	-	-	NULL
UNC79	57578	genome.wustl.edu	37	14	94063724	94063724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020818.3	+1	validated	p.I893M	1.000	236	0%	239	29.3%	0	-	benign(0.01)	tolerated(0.31)	neutral(0.028)	NULL
UNC79	57578	genome.wustl.edu	37	14	94084604	94084604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020818.3	+1	validated	p.L1254I	1.000	161	0%	139	33.8%	1	0%	probably_damaging(0.971)	tolerated(0.22)	neutral(0.455)	NULL
UNC79	57578	genome.wustl.edu	37	14	94087975	94087975	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020818.3	+1	validated	p.E1289*	1.000	283	0%	198	29.3%	0	-	-	-	-	NULL
UNC79	57578	genome.wustl.edu	37	14	94170971	94170971	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020818.3	+1	validated	p.L2379	1.000	134	0%	87	31%	0	-	-	-	-	NULL
ASB2	51676	genome.wustl.edu	37	14	94401050	94401050	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016150.3	-1	reviewed	p.P572	0.007	49	0%	26	38.5%	4	0%	-	-	-	HMMPfam_SOCS_box,HMMSmart_SM00253
DDX24	57062	genome.wustl.edu	37	14	94526753	94526753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020414.3	-1	reviewed	p.L535R	1.000	225	0%	247	27.9%	78	57.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_DEXDc,superfamily_SSF52540
PPP4R4	57718	genome.wustl.edu	37	14	94700907	94700907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058237.1	+1	reviewed	p.R211Q	1.000	117	0%	79	20.3%	0	-	possibly_damaging(0.671)	tolerated(0.07)	deleterious(0.557)	HMMPfam_HEAT,superfamily_ARM repeat
PPP4R4	57718	genome.wustl.edu	37	14	94718099	94718099	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058237.1	+1	reviewed	p.G577	0.998	149	0.7%	113	28.3%	0	-	-	-	-	superfamily_ARM repeat
SERPINA11	256394	genome.wustl.edu	37	14	94914624	94914624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080451.1	-1	provisional	p.A163D	0.253	463	0%	476	29.4%	0	-	possibly_damaging(0.886)	deleterious(0.01)	deleterious(0.752)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA9	327657	genome.wustl.edu	37	14	94931104	94931104	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175739.3	-1	validated	p.V348	0.073	285	0%	189	33.9%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINA12	145264	genome.wustl.edu	37	14	94964560	94964560	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173850.2	-1	provisional	p.L59	0.005	409	0%	313	31.3%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA5	5104	genome.wustl.edu	37	14	95053744	95053744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000624.4	+1	validated	p.Q15H	0.001	326	0%	266	32.3%	5	60%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	superfamily_Serpins
DICER1	23405	genome.wustl.edu	37	14	95562460	95562460	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030621.3	-1	reviewed	p.R1599	0.995	653	0%	655	33.9%	11	27.2%	-	-	-	NULL
DICER1	23405	genome.wustl.edu	37	14	95562811	95562811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030621.3	-1	reviewed	p.K1482N	0.999	210	0%	207	30.4%	20	15%	possibly_damaging(0.566)	deleterious(0.01)	deleterious(0.599)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
BDKRB2	624	genome.wustl.edu	37	14	96703479	96703479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000623.3	+1	reviewed	p.S12Y	0.000	179	0%	162	29%	4	0%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
BDKRB1	623	genome.wustl.edu	37	14	96731074	96731074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000710.2	+1	reviewed	p.R352Q	0.002	130	0%	91	24.2%	0	-	benign(0.046)	tolerated(0.3)	neutral(0.031)	NULL
ATG2B	55102	genome.wustl.edu	37	14	96757944	96757944	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018036.5	-1	validated	p.R1858*	1.000	251	0%	228	28.1%	0	-	-	-	-	NULL
ATG2B	55102	genome.wustl.edu	37	14	96770930	96770930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018036.5	-1	validated	p.S1582R	0.998	227	0%	177	27.1%	5	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
ATG2B	55102	genome.wustl.edu	37	14	96779761	96779761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018036.5	-1	validated	p.F1218L	1.000	108	0.9%	85	30.6%	0	-	probably_damaging(0.957)	deleterious(0.02)	deleterious(0.784)	NULL
ATG2B	55102	genome.wustl.edu	37	14	96790257	96790257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018036.5	-1	validated	p.S839L	0.909	156	0%	157	24.8%	1	0%	benign(0.01)	tolerated(0.29)	neutral(0.030)	NULL
AK7	122481	genome.wustl.edu	37	14	96875238	96875238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152327.2	+1	validated	p.S153L	0.740	96	0%	95	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-binding Rossmann-fold domains
PAPOLA	10914	genome.wustl.edu	37	14	96986521	96986521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032632.3	+1	validated	p.L46F	1.000	271	0%	273	38.1%	50	40%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_PAP_central,superfamily_Nucleotidyltransferase
VRK1	7443	genome.wustl.edu	37	14	97321640	97321640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003384.2	+1	reviewed	p.R219I	1.000	179	0%	147	27.2%	30	30%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	superfamily_Kinase_like
WDR25	79446	genome.wustl.edu	37	14	100995449	100995449	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024515.4	+1	validated	p.P439	0.615	16	0%	19	36.8%	20	70%	-	-	-	superfamily_WD40 repeat-like
BEGAIN	57596	genome.wustl.edu	37	14	101012947	101012947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020836.3	-1	validated	p.H23Y	1.000	12	0%	11	54.5%	0	-	possibly_damaging(0.925)	tolerated(0.1)	deleterious(0.660)	NULL
LOC100288131	100288131	genome.wustl.edu	37	14	101194873	101194873	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343290.1	-1	model	p.F84C	0.000	27	0%	19	31.6%	0	-	-	-	-	NULL
MIR370	442915	genome.wustl.edu	37	14	101377483	101377483	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000362135	+1	known	NULL	0.997	72	0%	71	33.8%	0	-	-	-	-	-
MIR376B	574435	genome.wustl.edu	37	14	101506062	101506062	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000459389	+1	known	NULL	0.037	8	0.000	15	0.267	0	-	-	-	-	-
MIR485	574436	genome.wustl.edu	37	14	101521785	101521785	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385292	+1	known	NULL	1.000	97	0%	78	57.7%	0	-	-	-	-	-
MIR485	574436	genome.wustl.edu	37	14	101521798	101521798	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385292	+1	known	NULL	1.000	95	0%	74	33.8%	0	-	-	-	-	-
DIO3	1735	genome.wustl.edu	37	14	102028588	102028588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001362.3	+1	reviewed	p.S226L	1.000	47	0%	28	50%	0	-	possibly_damaging(0.496)	tolerated(0.2)	neutral(0.215)	HMMPfam_T4_deiodinase
PPP2R5C	5527	genome.wustl.edu	37	14	102348516	102348516	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002719.3	+1	reviewed	p.R105*	1.000	66	0%	44	20.5%	40	17.5%	-	-	-	HMMPfam_B56,superfamily_ARM repeat
PPP2R5C	5527	genome.wustl.edu	37	14	102372814	102372814	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002719.3	+1	reviewed	p.L367	1.000	121	0%	184	29.9%	85	72.9%	-	-	-	HMMPfam_B56,superfamily_ARM repeat
DYNC1H1	1778	genome.wustl.edu	37	14	102484870	102484870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001376.4	+1	reviewed	p.A2754S	1.000	61	0%	43	32.6%	22	40.9%	possibly_damaging(0.854)	deleterious(0.02)	deleterious(0.712)	superfamily_SSF52540
DYNC1H1	1778	genome.wustl.edu	37	14	102493589	102493589	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001376.4	+1	reviewed	p.V2950	0.561	171	0%	157	26.8%	20	20%	-	-	-	HMMSmart_AAA,superfamily_SSF52540
DYNC1H1	1778	genome.wustl.edu	37	14	102498778	102498778	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001376.4	+1	reviewed	p.I3351	1.000	138	0%	154	28.6%	32	37.5%	-	-	-	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102504912	102504912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001376.4	+1	reviewed	p.F3675C	1.000	71	0%	52	25%	95	36.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102516831	102516831	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001376.4	+1	reviewed	p.F4624	0.232	492	0%	355	32.1%	433	39.9%	-	-	-	HMMPfam_Dynein_heavy
RCOR1	23186	genome.wustl.edu	37	14	103167627	103167627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015156.2	+1	validated	p.I150S	1.000	198	0%	169	37.9%	6	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ELM2
CDC42BPB	9578	genome.wustl.edu	37	14	103442080	103442080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006035.3	-1	reviewed	p.R483Q	0.999	117	0%	78	16.7%	31	41.9%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
EXOC3L4	91828	genome.wustl.edu	37	14	103574851	103574851	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077594.1	+1	validated	p.I658S	1.000	186	0%	143	37.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Sec6
MARK3	4140	genome.wustl.edu	37	14	103933460	103933460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128918.1	+1	validated	p.S348A	1.000	170	0%	167	27.5%	24	45.8%	benign(0.157)	tolerated(0.23)	neutral(0.056)	HMMPfam_UBA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00165
MARK3	4140	genome.wustl.edu	37	14	103958327	103958327	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128918.1	+1	validated	p.G600	0.992	101	0%	107	33.6%	57	45.6%	-	-	-	NULL
TDRD9	122402	genome.wustl.edu	37	14	104474793	104474793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153046.2	+1	validated	p.R699I	1.000	289	0%	229	23.1%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
TDRD9	122402	genome.wustl.edu	37	14	104488529	104488529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153046.2	+1	validated	p.R823I	0.996	51	0%	33	36.4%	0	-	probably_damaging(0.964)	tolerated(0.19)	neutral(0.456)	NULL
TDRD9	122402	genome.wustl.edu	37	14	104515962	104515962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153046.2	+1	validated	p.K1331T	0.999	16	0%	22	36.4%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ADSSL1	122622	genome.wustl.edu	37	14	105207558	105207558	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199165.1	+1	validated	p.A300	0.278	12	0%	12	41.7%	4	50%	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_Adenylsucc_synt,superfamily_SSF52540
SIVA1	10572	genome.wustl.edu	37	14	105222017	105222017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006427.3	+1	reviewed	p.V57M	0.000	71	0%	62	35.5%	191	48.6%	benign(0.157)	tolerated(0.1)	neutral(0.300)	HMMPfam_Siva
AHNAK2	113146	genome.wustl.edu	37	14	105405706	105405706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138420.2	-1	validated	p.S5361N	0.000	31	0%	25	48%	32	25%	probably_damaging(0.962)	tolerated(0.61)	neutral(0.409)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105406088	105406088	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138420.2	-1	validated	p.E5234*	0.000	202	0%	117	27.4%	23	56.5%	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105409466	105409466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138420.2	-1	validated	p.A4108T	0.001	187	0%	91	34.1%	5	100%	benign(0.104)	tolerated(0.2)	neutral(0.057)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105415997	105415997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138420.2	-1	validated	p.A1931T	0.346	107	0%	82	25.6%	4	0%	benign(0.012)	tolerated(0.38)	neutral(0.018)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105416825	105416825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138420.2	-1	validated	p.D1655Y	0.998	140	0%	103	24.3%	2	50%	benign(0.045)	deleterious(0.02)	neutral(0.386)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105419805	105419805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138420.2	-1	validated	p.Q661H	0.000	183	0%	143	30.1%	1	100%	possibly_damaging(0.616)	tolerated(0.23)	neutral(0.256)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105420318	105420318	+	Missense_Mutation	SNP	C	C	A	rs186581911	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138420.2	-1	validated	p.K490N	0.139	52	0%	47	38.3%	0	-	benign(0.049)	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105421413	105421413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138420.2	-1	validated	p.L178I	0.968	37	0%	29	17.2%	3	0%	benign(0.049)	deleterious(0)	neutral(0.448)	HMMSmart_SM00228,superfamily_PDZ domain-like
BRF1	2972	genome.wustl.edu	37	14	105722867	105722867	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001519.2	-1	reviewed	p.S153	0.997	11	0%	14	35.7%	6	16.6%	-	-	-	HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_TFIIB
IGHG2	3501	genome.wustl.edu	37	14	106109777	106109777	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390545	-1	known	p.V248	0.006	489	0%	505	28.3%	300	0%	-	-	-	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHG2	3501	genome.wustl.edu	37	14	106110438	106110438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390545	-1	known	p.R100C	0.000	416	0%	500	26.8%	334	0%	benign(0.094)	deleterious(0.03)	neutral(0.371)	superfamily_SSF48726
IGHG2	3501	genome.wustl.edu	37	14	106110900	106110900	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390545	-1	known	p.F76	0.007	271	0%	324	29%	393	0%	-	-	-	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHV1-2	28474	genome.wustl.edu	37	14	106452675	106452675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390594	-1	known	p.A116V	1.000	239	0%	267	31.1%	1	0%	benign(0.03)	tolerated(0.06)	neutral(0.324)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV1-18	28468	genome.wustl.edu	37	14	106641701	106641701	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390605	-1	known	p.S71	0.000	364	0%	366	27.9%	5	0%	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV3-43	28426	genome.wustl.edu	37	14	106926474	106926474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000434710	-1	known	p.L23R	0.998	680	0%	612	34.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-set,superfamily_SSF48726
IGHV1-45	28466	genome.wustl.edu	37	14	106963039	106963039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390621	-1	known	p.Q81H	0.005	259	0%	203	29.1%	0	-	benign(0.241)	deleterious(0.04)	neutral(0.373)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV1-45	28466	genome.wustl.edu	37	14	106963350	106963350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390621	-1	known	p.R6I	0.066	141	0%	139	23%	0	-	probably_damaging(0.98)	tolerated(0.69)	neutral(0.426)	NULL
IGHV2-70	28454	genome.wustl.edu	37	14	107178984	107178984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390634	-1	known	p.A65T	0.977	166	0%	163	24.5%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
ENSG00000215407	0	genome.wustl.edu	37	15	20434032	20434032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000400226	-1	known	p.K530N	0.997	259	0%	320	15.6%	2	0%	-	-	-	NULL
ENSG00000215407	0	genome.wustl.edu	37	15	20457279	20457279	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000400226	-1	known	p.E204*	1.000	63	0%	54	14.8%	1	0%	-	-	-	HMMPfam_BRO1
ENSG00000215407	0	genome.wustl.edu	37	15	20476948	20476948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000400226	-1	known	p.D37Y	1.000	116	0%	129	17.8%	0	-	-	-	-	HMMPfam_BRO1
LOC727924	727924	genome.wustl.edu	37	15	22332609	22332609	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_015416.1	+1	predicted	NULL	0.779	319	0%	329	25.8%	0	-	-	-	-	-
LOC642131	642131	genome.wustl.edu	37	15	22472934	22472934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001716834.1	-1	model	p.Y120H	1.000	337	0%	291	16.5%	1	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
LOC642131	642131	genome.wustl.edu	37	15	22473169	22473169	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001716834.1	-1	model	p.S41	0.010	182	1.1%	156	20.5%	2	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TUBGCP5	114791	genome.wustl.edu	37	15	22868880	22868880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102610.1	+1	validated	p.E918K	0.997	72	0%	62	32.3%	17	64.7%	possibly_damaging(0.712)	tolerated(0.45)	neutral(0.270)	HMMPfam_Spc97_Spc98
ENSG00000223681	0	genome.wustl.edu	37	15	23326106	23326106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000422607	-1	known	p.R196W	1.000	639	0%	493	16.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC653061	653061	genome.wustl.edu	37	15	23602759	23602759	+	Missense_Mutation	SNP	A	A	C	rs4778487		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343324.1	+1	model	p.K105T	1.000	49	0%	59	23.7%	0	-	-	-	-	NULL
C15orf2	23742	genome.wustl.edu	37	15	24922684	24922684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018958.2	+1	reviewed	p.V557A	0.000	320	0%	306	31.4%	0	-	benign(0.002)	-	-	NULL
C15orf2	23742	genome.wustl.edu	37	15	24922862	24922862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018958.2	+1	reviewed	p.K616N	0.001	187	0%	171	33.3%	0	-	probably_damaging(0.994)	-	-	NULL
UBE3A	7337	genome.wustl.edu	37	15	25601053	25601053	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000462.2	-1	reviewed	p.N707H	1.000	151	0%	106	33%	14	50%	possibly_damaging(0.732)	deleterious(0.05)	deleterious(0.613)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
ATP10A	57194	genome.wustl.edu	37	15	25924992	25924992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024490.3	-1	reviewed	p.K1332N	0.034	75	0%	57	43.9%	1	0%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
GABRB3	2562	genome.wustl.edu	37	15	26812839	26812839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000814.4	-1	reviewed	p.N242D	1.000	198	0%	197	39.6%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRB3	2562	genome.wustl.edu	37	15	26866681	26866681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000814.4	-1	reviewed	p.D81Y	1.000	126	0%	115	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRA5	2558	genome.wustl.edu	37	15	27114407	27114407	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000810.3	+1	reviewed	p.G4	1.000	119	0%	72	31.9%	0	-	-	-	-	NULL
OCA2	4948	genome.wustl.edu	37	15	28259961	28259961	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000275.2	-1	reviewed	p.T335	0.000	37	0%	18	55.6%	0	-	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28380783	28380783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004667.4	-1	reviewed	p.S4024L	1.000	145	0%	137	35%	3	66.6%	probably_damaging(0.987)	tolerated(0.05)	deleterious(0.782)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC2	8924	genome.wustl.edu	37	15	28386774	28386774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004667.4	-1	reviewed	p.R3940Q	1.000	240	0%	215	25.1%	9	11.1%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	superfamily_RCC1/BLIP-II
HERC2	8924	genome.wustl.edu	37	15	28458998	28458998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004667.4	-1	reviewed	p.D2226N	1.000	149	0%	115	27.8%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
HERC2	8924	genome.wustl.edu	37	15	28474382	28474382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004667.4	-1	reviewed	p.R1744Q	1.000	695	0%	561	61.7%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28882424	28882424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000382946	+1	known	p.T199K	1.000	247	0%	209	5.7%	0	-	-	-	-	NULL
TRPM1	4308	genome.wustl.edu	37	15	31325055	31325055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002420.4	-1	reviewed	p.S908F	0.998	178	0%	161	26.7%	0	-	benign(0.113)	deleterious(0.03)	neutral(0.373)	HMMPfam_Ion_trans
LOC283711	283711	genome.wustl.edu	37	15	31712358	31712358	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_040656.2	+1	model	NULL	0.000	32	0%	42	21.4%	0	-	-	-	-	-
CHRNA7	1139	genome.wustl.edu	37	15	32451842	32451842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000746.3	+1	reviewed	p.S289L	1.000	217	0%	204	21.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ARHGAP11A	9824	genome.wustl.edu	37	15	32920998	32920998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014783.3	+1	validated	p.R311I	0.658	150	0%	120	23.3%	11	72.7%	benign(0.392)	deleterious(0.01)	deleterious(0.531)	NULL
ARHGAP11A	9824	genome.wustl.edu	37	15	32921921	32921921	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014783.3	+1	validated	p.L355	1.000	187	0%	127	22%	4	50%	-	-	-	NULL
ARHGAP11A	9824	genome.wustl.edu	37	15	32925187	32925187	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014783.3	+1	validated	p.I371	0.637	275	0%	185	10.3%	5	20%	-	-	-	NULL
SCG5	6447	genome.wustl.edu	37	15	32971993	32971993	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144757.1	+1	validated	p.L85V	1.000	416	0%	370	31.4%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Secretogranin_V
FMN1	342184	genome.wustl.edu	37	15	33261397	33261397	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001103184.2	-1	validated	p.I612	0.917	548	0.2%	478	30.5%	0	-	-	-	-	NULL
FMN1	342184	genome.wustl.edu	37	15	33359291	33359291	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001103184.2	-1	validated	p.V265	0.000	179	0%	142	29.6%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33855049	33855049	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.E328	1.000	188	0%	183	32.2%	0	-	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RYR3	6263	genome.wustl.edu	37	15	33895540	33895540	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.G713	0.809	234	0%	192	24.5%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR3	6263	genome.wustl.edu	37	15	33926900	33926900	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.Y1047	1.000	292	0%	210	31%	0	-	-	-	-	HMMPfam_RyR
RYR3	6263	genome.wustl.edu	37	15	33939648	33939648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.S1322Y	0.998	62	0%	50	36%	0	-	possibly_damaging(0.565)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34015016	34015016	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.L2240	0.960	362	0%	281	33.5%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34080594	34080594	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.F3255	0.741	88	0%	75	37.3%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34102839	34102839	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.R3396*	0.991	53	0%	71	31%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34130453	34130453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.D4091A	1.000	187	0%	237	29.5%	0	-	probably_damaging(0.999)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34130556	34130556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.E4125D	0.003	195	0%	212	31.6%	0	-	benign(0.001)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34150050	34150050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001036.3	+1	validated	p.R4693C	1.000	86	0%	81	32.1%	0	-	probably_damaging(1)	-	-	HMMPfam_Ion_trans
AVEN	57099	genome.wustl.edu	37	15	34295260	34295260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020371.2	-1	validated	p.D140Y	1.000	146	0%	135	33.3%	23	34.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHRM5	1133	genome.wustl.edu	37	15	34355405	34355405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012125.3	+1	validated	p.A163T	1.000	202	0%	229	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
PGBD4	161779	genome.wustl.edu	37	15	34395832	34395832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152595.4	+1	validated	p.K367T	0.128	114	0%	101	20.8%	0	-	possibly_damaging(0.892)	tolerated(0.35)	neutral(0.372)	NULL
PGBD4	161779	genome.wustl.edu	37	15	34396097	34396097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152595.4	+1	validated	p.F455L	0.060	112	0%	88	12.5%	1	0%	benign(0.003)	tolerated(0.79)	neutral(0.001)	NULL
PGBD4	161779	genome.wustl.edu	37	15	34396248	34396248	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152595.4	+1	validated	p.R506*	0.005	110	0%	96	39.6%	1	100%	-	-	-	NULL
SLC12A6	9990	genome.wustl.edu	37	15	34532928	34532928	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133647.1	-1	reviewed	p.T790	0.981	158	0%	142	25.4%	0	-	-	-	-	NULL
C15orf55	256646	genome.wustl.edu	37	15	34640432	34640432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175741.1	+1	validated	p.K93N	1.000	188	0%	161	9.9%	0	-	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	NULL
LPCAT4	254531	genome.wustl.edu	37	15	34655895	34655895	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153613.2	-1	validated	p.V226	1.000	140	0%	106	38.7%	28	39.2%	-	-	-	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
GJD2	57369	genome.wustl.edu	37	15	35044753	35044753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020660.1	-1	provisional	p.R298C	1.000	99	0%	65	33.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ACTC1	70	genome.wustl.edu	37	15	35083430	35083430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005159.4	-1	reviewed	p.R292H	1.000	193	0%	190	32.6%	1	0%	possibly_damaging(0.807)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTC1	70	genome.wustl.edu	37	15	35084453	35084453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005159.4	-1	reviewed	p.E216*	1.000	84	0%	99	30.3%	2	0%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTC1	70	genome.wustl.edu	37	15	35085540	35085540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005159.4	-1	reviewed	p.K120N	1.000	123	0%	91	24.2%	1	0%	benign(0.348)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
AQR	9716	genome.wustl.edu	37	15	35174815	35174815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014691.2	-1	validated	p.R1018Q	1.000	173	0%	129	21.7%	29	48.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52540
AQR	9716	genome.wustl.edu	37	15	35224577	35224577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014691.2	-1	validated	p.V281A	1.000	101	0%	103	35.9%	9	33.3%	benign(0.145)	tolerated(0.35)	neutral(0.033)	NULL
ZNF770	54989	genome.wustl.edu	37	15	35274653	35274653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014106.2	-1	validated	p.R328I	1.000	44	0%	41	31.7%	7	42.8%	possibly_damaging(0.778)	tolerated(0.19)	neutral(0.340)	NULL
ENSG00000248276	0	genome.wustl.edu	37	15	35377338	35377338	+	RNA	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000514460	+1	known	NULL	0.068	61	0%	76	28.9%	0	-	-	-	-	-
ENSG00000248276	0	genome.wustl.edu	37	15	35377363	35377363	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000514460	+1	known	NULL	0.000	45	0%	56	23.2%	0	-	-	-	-	-
ATPBD4	89978	genome.wustl.edu	37	15	35814294	35814294	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001141972.1	-1	validated	p.*166C	1.000	70	0%	61	34.4%	0	-	-	-	-	NULL
MEIS2	4212	genome.wustl.edu	37	15	37186983	37186983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170677.2	-1	reviewed	p.G393D	1.000	326	0%	255	21.6%	18	77.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TMCO5A	145942	genome.wustl.edu	37	15	38243268	38243268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152453.2	+1	provisional	p.F234V	0.856	332	0%	293	32.4%	0	-	possibly_damaging(0.711)	tolerated(0.73)	neutral(0.259)	NULL
RASGRP1	10125	genome.wustl.edu	37	15	38792312	38792312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005739.3	-1	reviewed	p.R571L	1.000	228	0%	202	29.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
RASGRP1	10125	genome.wustl.edu	37	15	38803816	38803816	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005739.3	-1	reviewed	p.E319*	1.000	85	0%	93	28%	1	0%	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
THBS1	7057	genome.wustl.edu	37	15	39874866	39874866	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003246.2	+1	reviewed	p.D180	0.019	63	0%	38	28.9%	14	0%	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
FSIP1	161835	genome.wustl.edu	37	15	40057852	40057852	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152597.4	-1	validated	p.E136*	1.000	147	0%	101	17.8%	0	-	-	-	-	NULL
BAHD1	22893	genome.wustl.edu	37	15	40750704	40750704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014952.3	+1	validated	p.S14L	0.966	104	0%	73	19.2%	1	0%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
CASC5	57082	genome.wustl.edu	37	15	40949601	40949601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170589.3	+1	validated	p.E2241K	1.000	197	0%	201	26.4%	11	9%	possibly_damaging(0.936)	deleterious(0.03)	deleterious(0.746)	NULL
DNAJC17	55192	genome.wustl.edu	37	15	41067783	41067783	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018163.2	-1	validated	p.N164H	0.977	135	0%	95	37.9%	31	32.2%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
DNAJC17	55192	genome.wustl.edu	37	15	41099571	41099571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018163.2	-1	validated	p.K25R	1.000	91	0%	71	26.8%	17	52.9%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N
RHOV	171177	genome.wustl.edu	37	15	41165431	41165431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133639.3	-1	validated	p.R179Q	1.000	160	0%	111	24.3%	15	46.6%	possibly_damaging(0.951)	tolerated(0.12)	deleterious(0.655)	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540
INO80	54617	genome.wustl.edu	37	15	41289747	41289747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017553.1	-1	reviewed	p.N1184D	1.000	113	0%	131	29.8%	6	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
NDUFAF1	51103	genome.wustl.edu	37	15	41688814	41688814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016013.2	-1	validated	p.S148R	0.999	181	0.6%	205	32.7%	34	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CIA30
LTK	4058	genome.wustl.edu	37	15	41801322	41801322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002344.5	-1	reviewed	p.D335N	0.968	27	0%	36	27.8%	0	-	benign(0.076)	tolerated(0.44)	neutral(0.018)	NULL
RPAP1	26015	genome.wustl.edu	37	15	41819230	41819230	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015540.2	-1	reviewed	p.R595*	0.998	133	0%	153	24.2%	6	16.6%	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42028447	42028447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080541.2	+1	validated	p.P1329T	1.000	161	0%	158	24.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MGA	23269	genome.wustl.edu	37	15	42052635	42052635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080541.2	+1	validated	p.R2485C	0.997	187	0%	204	32.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
ENSG00000200293	0	genome.wustl.edu	37	15	42144129	42144129	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000363423	-1	novel	NULL	0.000	20	0%	11	36.4%	0	-	-	-	-	-
PLA2G4F	255189	genome.wustl.edu	37	15	42439413	42439413	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213600.3	-1	validated	p.T443S	0.000	26	0%	23	30.4%	2	50%	benign(0.001)	tolerated(0.52)	neutral(0.009)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
VPS39	23339	genome.wustl.edu	37	15	42470454	42470454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015289.2	-1	reviewed	p.L308I	1.000	189	0%	174	24.7%	10	50%	possibly_damaging(0.916)	tolerated(0.08)	deleterious(0.667)	NULL
TMEM87A	25963	genome.wustl.edu	37	15	42525452	42525452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015497.3	-1	validated	p.L341I	1.000	347	0%	292	13.7%	57	19.2%	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	HMMPfam_Lung_7-TM_R
GANC	2595	genome.wustl.edu	37	15	42570736	42570736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198141.2	+1	reviewed	p.V50A	1.000	122	0%	81	38.3%	5	40%	benign(0.004)	deleterious(0.05)	neutral(0.345)	NULL
GANC	2595	genome.wustl.edu	37	15	42602942	42602942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198141.2	+1	reviewed	p.R319C	0.470	227	0%	230	28.7%	0	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
GANC	2595	genome.wustl.edu	37	15	42621632	42621632	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198141.2	+1	reviewed	p.I543	1.000	205	0%	197	28.9%	1	0%	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
GANC	2595	genome.wustl.edu	37	15	42632043	42632043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198141.2	+1	reviewed	p.Y674D	1.000	112	0%	91	19.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31
CAPN3	825	genome.wustl.edu	37	15	42652186	42652186	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000070.2	+1	reviewed	p.F61	0.985	351	0.3%	317	30%	0	-	-	-	-	HMMSmart_SM00230,superfamily_Cysteine proteinases
ZFP106	64397	genome.wustl.edu	37	15	42729505	42729505	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022473.1	-1	provisional	p.V1534	1.000	214	0%	214	29%	1	0%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
UBR1	197131	genome.wustl.edu	37	15	43307911	43307911	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174916.2	-1	reviewed	p.E1062*	1.000	188	0%	132	11.4%	2	0%	-	-	-	NULL
ADAL	161823	genome.wustl.edu	37	15	43627326	43627326	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012969.2	+1	validated	p.Q7	0.027	72	0%	88	46.6%	1	0%	-	-	-	NULL
ADAL	161823	genome.wustl.edu	37	15	43627911	43627911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012969.2	+1	validated	p.L27F	1.000	122	0%	112	33.9%	2	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_A_deaminase,superfamily_SSF51556
ZSCAN29	146050	genome.wustl.edu	37	15	43659001	43659001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152455.3	-1	validated	p.P177S	1.000	118	0%	138	33.3%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
TUBGCP4	27229	genome.wustl.edu	37	15	43668391	43668391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014444.2	+1	provisional	p.F58L	1.000	128	0%	129	31.8%	8	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spc97_Spc98
TP53BP1	7158	genome.wustl.edu	37	15	43748582	43748582	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001141980.1	-1	validated	p.E742*	1.000	255	0%	296	29.1%	1	0%	-	-	-	NULL
CATSPER2	117155	genome.wustl.edu	37	15	43931950	43931950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172095.1	-1	reviewed	p.S203L	0.372	342	0%	310	29.7%	0	-	benign(0.025)	tolerated(0.39)	neutral(0.017)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
EIF3J	8669	genome.wustl.edu	37	15	44852461	44852461	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003758.2	+1	validated	p.L196V	1.000	104	0%	91	34.1%	80	48.7%	possibly_damaging(0.806)	deleterious(0.03)	deleterious(0.668)	HMMPfam_eIF3_subunit
SPG11	80208	genome.wustl.edu	37	15	44859625	44859625	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025137.3	-1	reviewed	p.W2251R	1.000	94	0%	67	26.9%	28	53.5%	probably_damaging(0.964)	tolerated(0.4)	neutral(0.422)	NULL
DUOX2	50506	genome.wustl.edu	37	15	45391909	45391909	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014080.4	-1	reviewed	p.A1122	0.020	80	0%	64	17.2%	0	-	-	-	-	HMMPfam_Ferric_reduct
DUOX2	50506	genome.wustl.edu	37	15	45392300	45392300	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014080.4	-1	reviewed	p.C1044	0.003	79	0%	57	35.1%	1	0%	-	-	-	NULL
DUOX2	50506	genome.wustl.edu	37	15	45397924	45397924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014080.4	-1	reviewed	p.E751K	1.000	120	0%	91	28.6%	0	-	possibly_damaging(0.9)	tolerated(0.27)	neutral(0.390)	NULL
DUOX1	53905	genome.wustl.edu	37	15	45444547	45444547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017434.3	+1	reviewed	p.S1086L	1.000	84	0%	44	22.7%	0	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	NULL
SPATA5L1	79029	genome.wustl.edu	37	15	45702637	45702637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024063.2	+1	validated	p.S448L	1.000	108	0%	95	33.7%	6	50%	benign(0.123)	tolerated(0.2)	neutral(0.059)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000200419	0	genome.wustl.edu	37	15	45884194	45884194	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000363549	+1	novel	NULL	0.157	20	0%	18	38.9%	0	-	-	-	-	-
SQRDL	58472	genome.wustl.edu	37	15	45965849	45965849	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021199.2	+1	provisional	p.S168	0.801	168	0%	165	29.7%	34	8.8%	-	-	-	HMMPfam_Pyr_redox_2,superfamily_SSF51905
SQRDL	58472	genome.wustl.edu	37	15	45968314	45968314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021199.2	+1	provisional	p.K224E	1.000	356	0%	349	26.6%	42	19%	benign(0.196)	tolerated(0.1)	neutral(0.305)	HMMPfam_Pyr_redox_2,superfamily_SSF51905
SEMA6D	80031	genome.wustl.edu	37	15	48056204	48056204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153618.1	+1	reviewed	p.D302G	1.000	310	0%	259	34%	0	-	possibly_damaging(0.535)	tolerated(0.46)	neutral(0.193)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SLC24A5	283652	genome.wustl.edu	37	15	48433326	48433326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205850.2	+1	reviewed	p.I365M	0.964	142	0%	97	35.1%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Na_Ca_ex
SLC12A1	6557	genome.wustl.edu	37	15	48500322	48500322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000338.2	+1	reviewed	p.E136K	1.000	143	0%	167	29.3%	0	-	benign(0.046)	tolerated(0.16)	neutral(0.062)	HMMPfam_AA_permease_N
SLC12A1	6557	genome.wustl.edu	37	15	48522700	48522700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000338.2	+1	reviewed	p.K325N	1.000	45	0%	26	38.5%	0	-	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	HMMPfam_AA_permease
SLC12A1	6557	genome.wustl.edu	37	15	48524936	48524936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000338.2	+1	reviewed	p.L330I	1.000	249	0%	230	30.4%	0	-	possibly_damaging(0.95)	tolerated(0.13)	deleterious(0.646)	HMMPfam_AA_permease
SLC12A1	6557	genome.wustl.edu	37	15	48525022	48525022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000338.2	+1	reviewed	p.F358L	1.000	253	0%	220	24.5%	0	-	benign(0.055)	tolerated(0.07)	neutral(0.323)	HMMPfam_AA_permease
SLC12A1	6557	genome.wustl.edu	37	15	48551502	48551502	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000338.2	+1	reviewed	p.V716	1.000	279	0%	220	31.8%	0	-	-	-	-	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48559765	48559765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000338.2	+1	reviewed	p.R721H	1.000	64	0%	74	31.1%	0	-	benign(0.016)	tolerated(0.27)	neutral(0.034)	NULL
FBN1	2200	genome.wustl.edu	37	15	48707780	48707780	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000138.4	-1	reviewed	p.G2668	0.038	210	0.5%	153	31.4%	19	0%	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48717646	48717646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000138.4	-1	reviewed	p.I2458T	1.000	140	0%	134	30.6%	17	0%	probably_damaging(0.998)	tolerated(0.76)	deleterious(0.475)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA
FBN1	2200	genome.wustl.edu	37	15	48720113	48720113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000389087	-1	known	p.S910F	0.988	19	0%	13	38.5%	0	-	unknown(0)	deleterious(0)	-	superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48805787	48805787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000138.4	-1	reviewed	p.R516Q	0.977	112	0%	93	24.7%	3	0%	possibly_damaging(0.755)	tolerated(0.38)	neutral(0.296)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48818350	48818350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000138.4	-1	reviewed	p.S322Y	1.000	279	0%	203	36%	1	0%	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
CEP152	22995	genome.wustl.edu	37	15	49031004	49031004	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014985.2	-1	provisional	p.R1469	0.000	282	0.4%	300	34.3%	0	-	-	-	-	NULL
CEP152	22995	genome.wustl.edu	37	15	49037145	49037145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014985.2	-1	provisional	p.D1171N	1.000	110	0%	71	28.2%	0	-	probably_damaging(0.99)	tolerated(0.23)	deleterious(0.483)	NULL
CEP152	22995	genome.wustl.edu	37	15	49076204	49076204	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014985.2	-1	provisional	p.E429	1.000	121	0%	73	17.8%	1	0%	-	-	-	NULL
ENSG00000250663	0	genome.wustl.edu	37	15	49170995	49170995	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000508082	-1	novel	NULL	0.000	33	0%	25	36%	133	34.5%	-	-	-	-
SECISBP2L	9728	genome.wustl.edu	37	15	49309117	49309117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014701.2	-1	provisional	p.K404N	1.000	144	0%	159	25.8%	3	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SECISBP2L	9728	genome.wustl.edu	37	15	49327822	49327822	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014701.2	-1	provisional	p.W79*	1.000	157	0%	158	31%	0	-	-	-	-	NULL
COPS2	9318	genome.wustl.edu	37	15	49426677	49426677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143887.1	-1	validated	p.T199I	1.000	99	0%	83	21.7%	40	57.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00753,superfamily_TPR-like
FGF7	2252	genome.wustl.edu	37	15	49776625	49776625	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002009.3	+1	reviewed	p.K170T	0.677	171	0%	109	34.9%	3	0%	possibly_damaging(0.647)	deleterious(0.02)	deleterious(0.610)	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine
ATP8B4	79895	genome.wustl.edu	37	15	50168641	50168641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024837.2	-1	validated	p.K954T	0.997	133	0%	129	39.5%	0	-	benign(0.004)	tolerated(0.56)	neutral(0.006)	superfamily_SSF81665
ATP8B4	79895	genome.wustl.edu	37	15	50212512	50212512	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024837.2	-1	validated	p.A618	0.978	183	0%	162	28.4%	0	-	-	-	-	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP8B4	79895	genome.wustl.edu	37	15	50279653	50279653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024837.2	-1	validated	p.K228R	1.000	178	0%	125	22.4%	0	-	benign(0.037)	tolerated(0.42)	neutral(0.016)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
GABPB1	2553	genome.wustl.edu	37	15	50578303	50578303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005254.5	-1	reviewed	p.E333K	1.000	237	0%	206	24.8%	14	35.7%	benign(0.059)	deleterious(0.01)	neutral(0.410)	NULL
GABPB1	2553	genome.wustl.edu	37	15	50601971	50601971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005254.5	-1	reviewed	p.K9Q	1.000	184	0%	153	30.7%	6	66.6%	benign(0.003)	tolerated(0.39)	neutral(0.016)	superfamily_Ankyrin repeat
USP50	373509	genome.wustl.edu	37	15	50830995	50830995	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203494.4	-1	validated	p.I243	0.997	129	0%	95	35.8%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
TRPM7	54822	genome.wustl.edu	37	15	50881800	50881800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017672.4	-1	reviewed	p.K1460Q	0.998	104	0%	68	32.4%	5	60%	benign(0.014)	deleterious(0.03)	neutral(0.365)	NULL
TRPM7	54822	genome.wustl.edu	37	15	50925076	50925076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017672.4	-1	reviewed	p.R374I	1.000	140	0%	125	23.2%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51217364	51217364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007347.3	+1	validated	p.E164K	1.000	90	0%	114	28.9%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
CYP19A1	1588	genome.wustl.edu	37	15	51504631	51504631	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000103.3	-1	reviewed	p.I383	0.677	563	0%	381	30.7%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP19A1	1588	genome.wustl.edu	37	15	51529090	51529090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000103.3	-1	reviewed	p.W88G	1.000	282	0%	240	30%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_p450,superfamily_Cytochrome_P450
DMXL2	23312	genome.wustl.edu	37	15	51791178	51791178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015263.3	-1	validated	p.D1415Y	1.000	633	0%	694	29.4%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51792126	51792126	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015263.3	-1	validated	p.E1099*	1.000	98	0%	110	24.5%	1	100%	-	-	-	NULL
DMXL2	23312	genome.wustl.edu	37	15	51856450	51856450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015263.3	-1	validated	p.R124S	1.000	185	0%	177	30.5%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SCG3	29106	genome.wustl.edu	37	15	51984450	51984450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013243.3	+1	reviewed	p.R262I	1.000	224	0%	207	30%	11	27.2%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
LYSMD2	256586	genome.wustl.edu	37	15	52017315	52017315	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153374.2	-1	validated	p.E93fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00257,HMMPfam_LysM,superfamily_LysM domain
LEO1	123169	genome.wustl.edu	37	15	52254638	52254638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138792.2	-1	provisional	p.K289N	1.000	105	0%	127	37%	6	66.6%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
MAPK6	5597	genome.wustl.edu	37	15	52342321	52342321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002748.3	+1	reviewed	p.K229N	1.000	161	0%	118	31.4%	15	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MYO5A	4644	genome.wustl.edu	37	15	52615557	52615557	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000259.3	-1	reviewed	p.E1574*	1.000	107	0%	85	27.1%	4	0%	-	-	-	NULL
MYO5A	4644	genome.wustl.edu	37	15	52662389	52662389	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000259.3	-1	reviewed	p.R1015*	0.596	181	0%	157	28%	1	0%	-	-	-	NULL
FAM214A	56204	genome.wustl.edu	37	15	52901411	52901411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019600.2	-1	validated	p.S567Y	0.870	136	0%	123	26.8%	0	-	possibly_damaging(0.648)	deleterious(0)	deleterious(0.672)	NULL
ONECUT1	3175	genome.wustl.edu	37	15	53081428	53081428	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004498.1	-1	provisional	p.F218	0.901	28	0%	29	34.5%	0	-	-	-	-	NULL
WDR72	256764	genome.wustl.edu	37	15	53908252	53908252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182758.2	-1	validated	p.K717N	0.986	280	0.4%	295	32.2%	0	-	possibly_damaging(0.554)	tolerated(0.1)	deleterious(0.475)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54307544	54307544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080534.1	+1	provisional	p.S815I	1.000	124	0%	107	29%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54529866	54529866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080534.1	+1	provisional	p.T1069I	1.000	71	0%	63	23.8%	0	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54624287	54624287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080534.1	+1	provisional	p.R1491M	1.000	36	0%	43	39.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54916089	54916089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080534.1	+1	provisional	p.R2099I	1.000	238	0%	160	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
UNC13C	440279	genome.wustl.edu	37	15	54919106	54919106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080534.1	+1	provisional	p.R2147Q	1.000	131	0%	123	29.3%	0	-	probably_damaging(0.96)	tolerated(0.07)	deleterious(0.722)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
RAB27A	5873	genome.wustl.edu	37	15	55497869	55497869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004580.3	-1	reviewed	p.T168A	0.984	215	0%	206	26.7%	39	53.8%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIGB	9488	genome.wustl.edu	37	15	55643036	55643036	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004855.4	+1	reviewed	p.V421	0.295	169	0%	137	29.9%	5	20%	-	-	-	HMMPfam_Glyco_transf_22
CCPG1	9236	genome.wustl.edu	37	15	55652604	55652604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004748.3	-1	validated	p.K456T	1.000	435	0%	384	33.1%	21	19%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
DYX1C1	161582	genome.wustl.edu	37	15	55759351	55759351	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130810.2	-1	reviewed	p.E138D	1.000	63	0%	70	31.4%	10	80%	benign(0.018)	tolerated(0.36)	neutral(0.021)	NULL
PYGO1	26108	genome.wustl.edu	37	15	55838376	55838376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015617.1	-1	provisional	p.R369W	1.000	227	0%	228	25%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1
PRTG	283659	genome.wustl.edu	37	15	56032595	56032595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173814.4	-1	validated	p.H128N	1.000	377	0%	346	25.1%	0	-	possibly_damaging(0.849)	tolerated(0.18)	neutral(0.382)	HMMPfam_I-set,superfamily_SSF48726
PRTG	283659	genome.wustl.edu	37	15	56032715	56032715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173814.4	-1	validated	p.L88F	1.000	546	0%	421	24%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NEDD4	4734	genome.wustl.edu	37	15	56152616	56152616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198400.2	-1	validated	p.A664T	0.007	158	0%	131	35.9%	2	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
NEDD4	4734	genome.wustl.edu	37	15	56155148	56155148	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198400.2	-1	validated	p.E560*	1.000	240	0%	215	23.7%	0	-	-	-	-	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP
NEDD4	4734	genome.wustl.edu	37	15	56164652	56164652	+	Missense_Mutation	SNP	C	C	A	rs141693007	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006154.2	-1	validated	p.R122I	1.000	13	0%	17	23.5%	0	-	unknown(0)	tolerated(0.08)	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NEDD4	4734	genome.wustl.edu	37	15	56208081	56208081	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198400.2	-1	validated	p.G317*	1.000	152	0%	118	26.3%	0	-	-	-	-	NULL
MNS1	55329	genome.wustl.edu	37	15	56736014	56736014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018365.2	-1	reviewed	p.R242Q	0.998	335	0.3%	234	35.9%	4	100%	benign(0.004)	tolerated(0.7)	neutral(0.002)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56958942	56958942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017661.2	-1	validated	p.K596N	0.998	253	0%	189	34.9%	1	100%	possibly_damaging(0.851)	deleterious(0.04)	deleterious(0.676)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56974651	56974651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017661.2	-1	validated	p.N269H	1.000	85	0%	75	26.7%	3	66.6%	benign(0.018)	tolerated(0.09)	neutral(0.297)	NULL
TCF12	6938	genome.wustl.edu	37	15	57458653	57458653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207036.1	+1	reviewed	p.P127S	1.000	275	0%	268	38.8%	21	42.8%	benign(0)	tolerated(1)	-	NULL
GCOM1	145781	genome.wustl.edu	37	15	58004198	58004198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001018090.1	+1	reviewed	p.N441H	0.000	107	0%	93	32.3%	17	52.9%	benign(0.013)	tolerated(0.05)	neutral(0.346)	NULL
ALDH1A2	8854	genome.wustl.edu	37	15	58253025	58253025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003888.2	-1	reviewed	p.A476V	1.000	188	0%	173	27.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Aldedh,superfamily_ALDH-like
ALDH1A2	8854	genome.wustl.edu	37	15	58253366	58253366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003888.2	-1	reviewed	p.V460L	1.000	138	0%	130	26.2%	1	0%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_Aldedh,superfamily_ALDH-like
ALDH1A2	8854	genome.wustl.edu	37	15	58302898	58302898	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003888.2	-1	reviewed	p.R148*	0.813	105	0%	74	27%	0	-	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
LIPC	3990	genome.wustl.edu	37	15	58861003	58861003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000236.2	+1	reviewed	p.T493A	0.052	190	0%	116	32.8%	0	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	NULL
HSP90AB4P	664618	genome.wustl.edu	37	15	58984838	58984838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380522	-1	known	p.D163Y	1.000	88	0%	63	36.5%	0	-	-	-	-	superfamily_ATP_bd_ATPase
HSP90AB4P	664618	genome.wustl.edu	37	15	58985182	58985182	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380522	-1	known	p.K48T	1.000	149	0%	125	28.8%	0	-	-	-	-	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
FAM63B	54629	genome.wustl.edu	37	15	59144009	59144009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040450.1	+1	validated	p.S528G	1.000	163	0%	179	30.2%	0	-	benign(0.008)	tolerated(0.3)	neutral(0.029)	NULL
SLTM	79811	genome.wustl.edu	37	15	59186128	59186128	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024755.2	-1	validated	p.E514*	1.000	202	0%	169	33.7%	10	0%	-	-	-	NULL
SLTM	79811	genome.wustl.edu	37	15	59205829	59205829	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024755.2	-1	validated	p.E128*	1.000	266	0%	270	28.9%	12	0%	-	-	-	NULL
RNF111	54778	genome.wustl.edu	37	15	59323858	59323858	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017610.6	+1	reviewed	p.V279	0.997	262	0%	267	30.3%	8	12.5%	-	-	-	NULL
MYO1E	4643	genome.wustl.edu	37	15	59466362	59466362	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004998.2	-1	validated	p.F709	0.001	272	0%	256	29.7%	23	21.7%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1E	4643	genome.wustl.edu	37	15	59470659	59470659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004998.2	-1	validated	p.S661L	1.000	40	0%	48	27.1%	29	37.9%	possibly_damaging(0.671)	tolerated(0.14)	deleterious(0.487)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM81A	145773	genome.wustl.edu	37	15	59752198	59752198	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152450.2	+1	validated	p.L29	0.382	145	0%	105	27.6%	0	-	-	-	-	NULL
FAM81A	145773	genome.wustl.edu	37	15	59752394	59752394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152450.2	+1	validated	p.R95W	0.994	492	0%	381	24.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOC100130107	100130107	genome.wustl.edu	37	15	60061097	60061097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001719310.2	-1	model	p.F50L	1.000	114	0%	108	37%	424	0%	-	-	-	NULL
LOC100130107	100130107	genome.wustl.edu	37	15	60061145	60061145	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001719310.2	-1	model	p.L34	1.000	115	0%	120	22.5%	970	0%	-	-	-	NULL
LOC100130107	100130107	genome.wustl.edu	37	15	60061166	60061166	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001719310.2	-1	model	p.R27	1.000	104	0%	105	42.9%	700	0%	-	-	-	NULL
ANXA2	302	genome.wustl.edu	37	15	60648164	60648164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002858.2	-1	reviewed	p.S179L	0.854	185	0%	195	34.4%	1212	43.8%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
VPS13C	54832	genome.wustl.edu	37	15	62147105	62147105	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020821.1	-1	validated	p.R3709*	0.018	81	0%	88	28.4%	9	0%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62165584	62165584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020821.1	-1	validated	p.R3480Q	1.000	360	0%	331	33.2%	6	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62238060	62238060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020821.1	-1	validated	p.E1668*	1.000	456	0%	359	23.1%	0	-	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62276202	62276202	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020821.1	-1	validated	p.A577	1.000	282	0%	231	23.8%	0	-	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62283893	62283893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020821.1	-1	validated	p.E488K	1.000	542	0.2%	444	31.5%	0	-	possibly_damaging(0.561)	tolerated(0.05)	deleterious(0.537)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62302669	62302669	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020821.1	-1	validated	e13+2	0.984	185	0%	126	28.6%	0	-	-	-	-	-
VPS13C	54832	genome.wustl.edu	37	15	62305311	62305311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020821.1	-1	validated	p.R251Q	0.151	80	0%	66	22.7%	1	100%	possibly_damaging(0.657)	tolerated(0.14)	deleterious(0.481)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62336448	62336448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020821.1	-1	validated	p.V36A	1.000	47	0%	30	20%	0	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	NULL
TLN2	83660	genome.wustl.edu	37	15	62942361	62942361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015059.2	+1	reviewed	p.Y72C	1.000	110	0%	91	25.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TLN2	83660	genome.wustl.edu	37	15	63000791	63000791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015059.2	+1	reviewed	p.R755C	0.968	47	0%	40	15%	0	-	possibly_damaging(0.845)	deleterious(0.04)	deleterious(0.673)	superfamily_SSF109885
TLN2	83660	genome.wustl.edu	37	15	63058558	63058558	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015059.2	+1	reviewed	p.I1711	0.999	73	0%	45	31.1%	2	0%	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	63111769	63111769	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015059.2	+1	reviewed	p.R2276*	1.000	91	0%	56	23.2%	3	0%	-	-	-	NULL
LACTB	114294	genome.wustl.edu	37	15	63433603	63433603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032857.2	+1	reviewed	p.L415I	1.000	277	0%	271	29.9%	9	44.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Beta-lactamase,superfamily_beta-lactamase/transpeptidase-like
LOC100130855	100130855	genome.wustl.edu	37	15	63849008	63849008	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078495.1	-1	model	NULL	0.005	25	0%	31	32.3%	0	-	-	-	-	-
HERC1	8925	genome.wustl.edu	37	15	63966789	63966789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003922.3	-1	reviewed	p.L2533P	1.000	54	0%	74	32.4%	1	0%	probably_damaging(0.991)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63972834	63972834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003922.3	-1	reviewed	p.E2123K	1.000	159	0%	141	12.1%	2	0%	probably_damaging(0.995)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
HERC1	8925	genome.wustl.edu	37	15	64015480	64015480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003922.3	-1	reviewed	p.R1215W	0.996	52	0%	44	36.4%	0	-	possibly_damaging(0.66)	-	-	NULL
DAPK2	23604	genome.wustl.edu	37	15	64231485	64231485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014326.3	-1	reviewed	p.E177K	1.000	557	0%	495	32.3%	8	50%	benign(0)	tolerated(0.86)	neutral(0.001)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SNX1	6642	genome.wustl.edu	37	15	64422191	64422191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003099.3	+1	reviewed	p.V295A	1.000	93	0%	77	32.5%	76	42.1%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_Vps5
TRIP4	9325	genome.wustl.edu	37	15	64686282	64686282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016213.3	+1	validated	p.S80L	0.997	85	0%	62	24.2%	7	0%	possibly_damaging(0.575)	tolerated(0.14)	neutral(0.447)	NULL
TRIP4	9325	genome.wustl.edu	37	15	64747249	64747249	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016213.3	+1	validated	p.N578Y	1.000	70	0%	61	39.3%	8	50%	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	NULL
ZNF609	23060	genome.wustl.edu	37	15	64966761	64966761	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015042.1	+1	provisional	p.R570*	0.983	391	0%	283	11.7%	2	0%	-	-	-	NULL
ZNF609	23060	genome.wustl.edu	37	15	64967579	64967579	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015042.1	+1	provisional	p.S842	1.000	376	0%	273	26.4%	1	0%	-	-	-	NULL
MIR1272	100302184	genome.wustl.edu	37	15	65054611	65054611	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000408106	-1	known	NULL	0.001	53	0%	42	35.7%	0	-	-	-	-	-
ANKDD1A	348094	genome.wustl.edu	37	15	65242156	65242156	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182703.3	+1	validated	p.F482	0.991	71	0%	38	18.4%	0	-	-	-	-	HMMPfam_Death,superfamily_DEATH_like
CILP	8483	genome.wustl.edu	37	15	65489521	65489521	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003613.3	-1	reviewed	p.R1035*	0.981	85	0%	95	29.5%	2	0%	-	-	-	NULL
CILP	8483	genome.wustl.edu	37	15	65489862	65489862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003613.3	-1	reviewed	p.R921Q	0.986	140	0%	135	26.7%	1	0%	benign(0.135)	tolerated(0.33)	neutral(0.036)	NULL
CILP	8483	genome.wustl.edu	37	15	65496738	65496738	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003613.3	-1	reviewed	p.R263*	0.999	151	0.7%	106	26.4%	1	0%	-	-	-	superfamily_Carboxypeptidase regulatory domain
IGDCC4	57722	genome.wustl.edu	37	15	65686774	65686774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020962.1	-1	provisional	p.K563N	1.000	255	0%	188	25.5%	0	-	possibly_damaging(0.564)	deleterious(0)	deleterious(0.637)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
IGDCC4	57722	genome.wustl.edu	37	15	65687558	65687558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020962.1	-1	provisional	p.D484N	1.000	71	0%	62	32.3%	0	-	possibly_damaging(0.576)	tolerated(0.18)	neutral(0.254)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
C15orf44	81556	genome.wustl.edu	37	15	65890686	65890686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030800.1	-1	predicted	p.D241Y	1.000	162	0%	112	11.6%	23	0%	possibly_damaging(0.846)	deleterious(0.03)	deleterious(0.690)	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65917330	65917330	+	Silent	SNP	G	G	A	rs35776911		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004727.2	+1	validated	p.P304	0.000	153	0.7%	143	28%	4	0%	-	-	-	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65946200	65946200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004727.2	+1	validated	p.I1028S	0.998	295	0%	239	26.4%	1	100%	possibly_damaging(0.559)	deleterious(0.04)	deleterious(0.539)	HMMPfam_Na_Ca_ex
DENND4A	10260	genome.wustl.edu	37	15	66030085	66030085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144823.1	-1	validated	p.R334C	1.000	51	0%	40	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DENN,HMMSmart_SM00799
IQCH	64799	genome.wustl.edu	37	15	67629324	67629324	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031715.2	+1	validated	p.S133	0.988	153	0%	130	34.6%	0	-	-	-	-	NULL
IQCH	64799	genome.wustl.edu	37	15	67636442	67636442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031715.2	+1	validated	p.A184S	1.000	159	0%	179	26.3%	0	-	unknown(0)	deleterious(0)	-	NULL
IQCH	64799	genome.wustl.edu	37	15	67649703	67649703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031715.2	+1	validated	p.E220K	0.001	138	0%	129	27.1%	0	-	unknown(0)	tolerated(1)	-	NULL
SKOR1	390598	genome.wustl.edu	37	15	68118276	68118276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031807.1	+1	provisional	p.S28I	1.000	18	0%	21	38.1%	0	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
SKOR1	390598	genome.wustl.edu	37	15	68118609	68118609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031807.1	+1	provisional	p.S139L	1.000	22	0%	13	46.2%	0	-	benign(0.037)	deleterious(0)	neutral(0.447)	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind
SKOR1	390598	genome.wustl.edu	37	15	68118647	68118647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031807.1	+1	provisional	p.R152C	1.000	26	0%	16	31.2%	0	-	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind
SKOR1	390598	genome.wustl.edu	37	15	68118703	68118703	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031807.1	+1	provisional	p.F170	1.000	30	0%	26	23.1%	0	-	-	-	-	superfamily_SAND_like
FEM1B	10116	genome.wustl.edu	37	15	68582856	68582856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015322.3	+1	provisional	p.R387Q	1.000	229	0%	237	24.5%	4	50%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	superfamily_ANK
CORO2B	10391	genome.wustl.edu	37	15	69018260	69018260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000261861	+1	known	p.R464W	1.000	142	0%	119	37.8%	2	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
NOX5	79400	genome.wustl.edu	37	15	69335138	69335138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024505.3	+1	validated	p.S529L	0.011	96	0%	68	11.8%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_FAD_binding_8,superfamily_Riboflavin_synthase_like_b-brl
PAQR5	54852	genome.wustl.edu	37	15	69677019	69677019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001104554.1	+1	validated	p.F61L	1.000	695	0%	867	26.4%	8	25%	benign(0.042)	deleterious(0.01)	neutral(0.408)	HMMPfam_HlyIII
UACA	55075	genome.wustl.edu	37	15	70959936	70959936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018003.2	-1	validated	p.E1029D	0.996	366	0%	373	34.9%	22	40.9%	possibly_damaging(0.582)	tolerated(0.06)	deleterious(0.522)	NULL
LRRC49	54839	genome.wustl.edu	37	15	71300934	71300934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017691.2	+1	validated	p.K462N	1.000	67	0%	69	21.7%	10	40%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
LRRC49	54839	genome.wustl.edu	37	15	71329648	71329648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017691.2	+1	validated	p.D612Y	1.000	177	0%	191	34.6%	7	42.8%	possibly_damaging(0.934)	deleterious(0.02)	deleterious(0.763)	NULL
LRRC49	54839	genome.wustl.edu	37	15	71341895	71341895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017691.2	+1	validated	p.R669C	0.979	260	0%	186	24.2%	5	20%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
MYO9A	4649	genome.wustl.edu	37	15	72190034	72190034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006901.2	-1	validated	p.F1604V	1.000	138	0%	174	29.9%	1	0%	benign(0.156)	deleterious(0)	neutral(0.459)	NULL
MYO9A	4649	genome.wustl.edu	37	15	72190967	72190967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006901.2	-1	validated	p.R1293C	1.000	299	0%	351	25.4%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NEO1	4756	genome.wustl.edu	37	15	73551136	73551136	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002499.3	+1	validated	p.R708*	1.000	138	0.7%	134	32.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NEO1	4756	genome.wustl.edu	37	15	73575356	73575356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002499.3	+1	validated	p.L1105P	1.000	681	0%	481	33.1%	7	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Neogenin_C
HCN4	10021	genome.wustl.edu	37	15	73616252	73616252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005477.2	-1	reviewed	p.D728N	1.000	46	0%	39	33.3%	0	-	benign(0.202)	deleterious(0.03)	neutral(0.384)	NULL
HCN4	10021	genome.wustl.edu	37	15	73635748	73635748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005477.2	-1	reviewed	p.R396Q	1.000	50	0%	37	24.3%	0	-	probably_damaging(0.955)	deleterious(0.03)	deleterious(0.763)	HMMPfam_Ion_trans,superfamily_SSF81324
HCN4	10021	genome.wustl.edu	37	15	73635992	73635992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005477.2	-1	reviewed	p.R315C	1.000	80	0%	62	29%	0	-	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	HMMPfam_Ion_trans,superfamily_SSF81324
TBC1D21	161514	genome.wustl.edu	37	15	74177371	74177371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153356.1	+1	provisional	p.M169T	1.000	160	0%	152	32.9%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMSmart_TBC,superfamily_RabGAP_TBC
ISLR	3671	genome.wustl.edu	37	15	74467459	74467459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005545.3	+1	validated	p.R87H	0.319	76	0%	76	25%	188	1.5%	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	superfamily_SSF52058
CCDC33	80125	genome.wustl.edu	37	15	74572367	74572367	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025055.3	+1	validated	p.R275*	0.189	44	0%	43	44.2%	0	-	-	-	-	NULL
CLK3	1198	genome.wustl.edu	37	15	74918195	74918195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130028.1	+1	reviewed	p.A383T	1.000	145	0%	103	33%	57	50.8%	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CLK3	1198	genome.wustl.edu	37	15	74919894	74919894	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130028.1	+1	reviewed	p.K457N	1.000	195	0%	125	29.6%	52	38.4%	possibly_damaging(0.72)	tolerated(0.08)	deleterious(0.561)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CYP1A1	1543	genome.wustl.edu	37	15	75014717	75014717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000499.3	-1	reviewed	p.R241H	0.974	67	0%	56	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
LOC646791	646791	genome.wustl.edu	37	15	75614340	75614340	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_017650.3	-1	model	NULL	0.028	89	0%	93	29%	0	-	-	-	-	-
PTPN9	5780	genome.wustl.edu	37	15	75798200	75798200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002833.2	-1	reviewed	p.D262N	1.000	127	0%	93	34.4%	11	36.3%	possibly_damaging(0.744)	deleterious(0.01)	deleterious(0.679)	HMMPfam_CRAL_TRIO,superfamily_CRAL_TRIO_C
SNUPN	10073	genome.wustl.edu	37	15	75902273	75902273	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042581.1	-1	reviewed	p.V122	0.987	118	0%	152	30.9%	14	42.8%	-	-	-	NULL
CSPG4	1464	genome.wustl.edu	37	15	75978010	75978010	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001897.4	-1	reviewed	p.I1274	0.715	4	0.000	7	0.714	2	0%	-	-	-	NULL
UBE2Q2	92912	genome.wustl.edu	37	15	76183284	76183284	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173469.2	+1	validated	p.E320*	1.000	152	0%	131	22.1%	17	0%	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
SCAPER	49855	genome.wustl.edu	37	15	77134166	77134166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020843.2	-1	validated	p.R100Q	1.000	197	0%	175	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77154845	77154845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020843.2	-1	validated	p.D11E	1.000	94	0%	89	28.1%	1	0%	possibly_damaging(0.704)	tolerated(0.79)	neutral(0.255)	NULL
HMG20A	10363	genome.wustl.edu	37	15	77759491	77759491	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018200.2	+1	provisional	p.R98*	1.000	255	0%	185	29.2%	13	0%	-	-	-	superfamily_HMG-box
ACSBG1	23205	genome.wustl.edu	37	15	78486360	78486360	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015162.3	-1	reviewed	p.L152	0.964	23	0%	20	40%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DNAJA4	55466	genome.wustl.edu	37	15	78566680	78566680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018602.3	+1	validated	p.R216H	1.000	29	0%	40	20%	3	0%	benign(0.085)	tolerated(0.26)	neutral(0.040)	HMMPfam_DnaJ_CXXCXGXG,superfamily_HSP_DnaJ_cys-rich,superfamily_HSP40_DnaJ_pep
IREB2	3658	genome.wustl.edu	37	15	78786553	78786553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004136.2	+1	validated	p.K848Q	1.000	397	0%	395	32.4%	10	60%	possibly_damaging(0.49)	tolerated(0.06)	deleterious(0.486)	HMMPfam_Aconitase_C,superfamily_Aconitase
AGPHD1	123688	genome.wustl.edu	37	15	78807408	78807408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013619.2	+1	validated	p.E146*	1.000	89	0%	52	25%	7	0%	-	-	-	HMMPfam_APH,superfamily_Protein kinase-like (PK-like)
CHRNB4	1143	genome.wustl.edu	37	15	78923429	78923429	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000750.3	-1	validated	p.V116	1.000	172	0%	187	29.4%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
RASGRF1	5923	genome.wustl.edu	37	15	79350700	79350700	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002891.4	-1	reviewed	p.I169	0.192	211	0%	256	41.8%	0	-	-	-	-	NULL
KIAA1024	23251	genome.wustl.edu	37	15	79748604	79748604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015206.2	+1	validated	p.D39N	1.000	166	0%	185	25.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAH	2184	genome.wustl.edu	37	15	80452147	80452147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000137.1	+1	reviewed	p.A81V	0.977	102	0%	84	25%	18	38.8%	benign(0.021)	tolerated(1)	neutral(0.001)	HMMPfam_DUF1969,superfamily_Fumarylacetoacetate hydrolase FAH N-terminal domain
KIAA1199	57214	genome.wustl.edu	37	15	81221382	81221382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018689.1	+1	validated	p.D827N	1.000	159	0%	131	29.8%	16	37.5%	benign(0.148)	tolerated(0.15)	neutral(0.254)	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81230194	81230194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018689.1	+1	validated	p.S1094L	1.000	134	0%	82	40.2%	20	45%	probably_damaging(0.998)	tolerated(0.59)	deleterious(0.479)	NULL
C15orf26	161502	genome.wustl.edu	37	15	81428907	81428907	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173528.2	+1	predicted	p.V70	0.991	147	0%	133	21.8%	0	-	-	-	-	NULL
C15orf26	161502	genome.wustl.edu	37	15	81440202	81440202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173528.2	+1	predicted	p.N214D	0.984	62	0%	56	30.4%	0	-	probably_damaging(0.953)	deleterious(0.05)	deleterious(0.742)	NULL
IL16	3603	genome.wustl.edu	37	15	81592616	81592616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172217.3	+1	reviewed	p.K983N	0.011	86	0%	97	44.3%	3	0%	possibly_damaging(0.72)	tolerated(0.22)	neutral(0.303)	NULL
TMC3	342125	genome.wustl.edu	37	15	81624904	81624904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080532.1	-1	provisional	p.Q1053H	0.687	35	0%	30	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMC3	342125	genome.wustl.edu	37	15	81625389	81625389	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080532.1	-1	provisional	p.E892*	0.960	144	0%	103	31.1%	0	-	-	-	-	NULL
TMC3	342125	genome.wustl.edu	37	15	81633820	81633820	+	Silent	SNP	G	G	A	rs192774115	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080532.1	-1	provisional	p.N585	0.944	29	0%	23	26.1%	0	-	-	-	-	HMMPfam_TMC
TMC3	342125	genome.wustl.edu	37	15	81660658	81660658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080532.1	-1	provisional	p.N83S	1.000	207	0%	176	34.1%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
FAM154B	283726	genome.wustl.edu	37	15	82564057	82564057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008226.1	+1	predicted	p.S56L	0.633	240	0%	243	32.9%	0	-	benign(0.059)	tolerated(0.15)	neutral(0.245)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83330652	83330652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004644.3	-1	validated	p.V962I	0.999	65	0%	52	23.1%	3	0%	unknown(0)	tolerated(0.14)	-	NULL
AP3B2	8120	genome.wustl.edu	37	15	83346110	83346110	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004644.3	-1	validated	p.V468	0.192	31	0%	44	18.2%	1	100%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
FAM103A1	83640	genome.wustl.edu	37	15	83657831	83657831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031452.2	+1	predicted	p.E21*	0.981	140	0%	110	20.9%	46	10.8%	-	-	-	NULL
FAM103A1	83640	genome.wustl.edu	37	15	83657925	83657925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031452.2	+1	predicted	p.R52I	1.000	79	0%	88	28.4%	33	18.1%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
BNC1	646	genome.wustl.edu	37	15	83936886	83936886	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001717.3	-1	reviewed	p.H66	0.620	174	0%	146	27.4%	0	-	-	-	-	NULL
SH3GL3	6457	genome.wustl.edu	37	15	84228050	84228050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003027.3	+1	validated	p.D31N	1.000	94	0%	81	34.6%	0	-	possibly_damaging(0.557)	deleterious(0.04)	deleterious(0.539)	HMMPfam_BAR,HMMSmart_SM00721
ALPK3	57538	genome.wustl.edu	37	15	85399777	85399777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020778.4	+1	validated	p.R805I	0.001	153	0%	143	29.4%	0	-	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	NULL
ALPK3	57538	genome.wustl.edu	37	15	85405882	85405882	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020778.4	+1	validated	p.E1584	1.000	110	0%	103	24.3%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
AKAP13	11214	genome.wustl.edu	37	15	86123527	86123527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006738.4	+1	reviewed	p.R743Q	0.012	233	0%	263	27%	3	100%	benign(0.139)	tolerated(0.06)	neutral(0.335)	NULL
KLHL25	64410	genome.wustl.edu	37	15	86312711	86312711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022480.3	-1	validated	p.A111T	1.000	37	0%	33	57.6%	5	40%	benign(0)	tolerated(0.8)	neutral(0.001)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
NTRK3	4916	genome.wustl.edu	37	15	88669548	88669548	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012338.1	-1	reviewed	p.F450	0.328	197	0%	157	25.5%	0	-	-	-	-	NULL
DET1	55070	genome.wustl.edu	37	15	89056262	89056262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017996.3	-1	validated	p.F536V	0.999	85	0%	70	37.1%	7	14.2%	benign(0.123)	tolerated(0.57)	neutral(0.016)	HMMPfam_Det1
DET1	55070	genome.wustl.edu	37	15	89074569	89074569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017996.3	-1	validated	p.R134H	1.000	81	0%	83	37.3%	4	100%	probably_damaging(0.978)	tolerated(0.11)	deleterious(0.692)	NULL
ISG20	3669	genome.wustl.edu	37	15	89182806	89182806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002201.4	+1	provisional	p.F70C	0.729	53	0%	34	32.4%	107	51.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
ACAN	176	genome.wustl.edu	37	15	89398608	89398608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013227.3	+1	reviewed	p.T931I	0.002	70	0%	54	25.9%	1	0%	benign(0.188)	tolerated(0.57)	neutral(0.024)	NULL
ACAN	176	genome.wustl.edu	37	15	89400255	89400255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013227.3	+1	reviewed	p.S1365Y	0.001	199	0%	151	31.8%	2	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
MFGE8	4240	genome.wustl.edu	37	15	89449889	89449889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005928.2	-1	validated	p.D170N	0.620	99	0%	103	27.2%	711	50.2%	benign(0.039)	tolerated(0.38)	neutral(0.020)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
FANCI	55215	genome.wustl.edu	37	15	89857912	89857912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113378.1	+1	reviewed	p.L1264I	1.000	248	0.4%	243	30.9%	31	35.4%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
RHCG	51458	genome.wustl.edu	37	15	90039635	90039635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016321.1	-1	provisional	p.K47N	0.000	76	0%	67	31.3%	0	-	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_Ammonium_transp
WDR93	56964	genome.wustl.edu	37	15	90245149	90245149	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020212.1	+1	provisional	p.R58*	0.895	103	0%	143	31.5%	1	0%	-	-	-	NULL
ZNF710	374655	genome.wustl.edu	37	15	90611131	90611131	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198526.2	+1	validated	p.F254	0.001	42	0%	33	33.3%	6	66.6%	-	-	-	NULL
IDH2	3418	genome.wustl.edu	37	15	90628303	90628303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002168.2	-1	reviewed	p.A370T	1.000	95	0%	83	10.8%	501	18.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
C15orf58	390637	genome.wustl.edu	37	15	90784179	90784179	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013657.2	+1	validated	p.L13	0.997	197	0%	193	30.1%	7	28.5%	-	-	-	NULL
BLM	641	genome.wustl.edu	37	15	91337524	91337524	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000057.2	+1	reviewed	p.G1049	0.982	45	0%	59	35.6%	8	75%	-	-	-	superfamily_SSF52540
FES	2242	genome.wustl.edu	37	15	91432628	91432628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002005.3	+1	reviewed	p.R254H	0.850	45	0%	27	59.3%	22	40.9%	possibly_damaging(0.942)	tolerated(0.11)	deleterious(0.659)	NULL
SLCO3A1	28232	genome.wustl.edu	37	15	92671715	92671715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013272.3	+1	validated	p.S503I	1.000	229	0%	193	25.4%	6	0%	unknown(0)	-	-	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors
SLCO3A1	28232	genome.wustl.edu	37	15	92690282	92690282	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013272.3	+1	validated	p.C527	1.000	223	0%	215	29.8%	17	5.8%	unknown(0)	-	-	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors
CHD2	1106	genome.wustl.edu	37	15	93498737	93498737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001271.3	+1	reviewed	p.D602Y	1.000	38	0%	32	21.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MCTP2	55784	genome.wustl.edu	37	15	94942189	94942189	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018349.3	+1	validated	e14-1	1.000	161	0%	127	29.9%	0	-	-	-	-	-
MCTP2	55784	genome.wustl.edu	37	15	95013626	95013626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018349.3	+1	validated	p.I809V	0.055	253	0%	191	24.6%	0	-	benign(0)	tolerated(1)	-	NULL
MCTP2	55784	genome.wustl.edu	37	15	95013638	95013638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018349.3	+1	validated	p.F813V	1.000	238	0%	185	39.5%	0	-	possibly_damaging(0.671)	deleterious(0.02)	deleterious(0.621)	NULL
IGF1R	3480	genome.wustl.edu	37	15	99456486	99456486	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000875.3	+1	reviewed	p.I601	0.998	152	0%	105	23.8%	5	40%	-	-	-	superfamily_FN_III-like
SYNM	23336	genome.wustl.edu	37	15	99669930	99669930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000336292	+1	known	p.R454S	0.001	105	0%	103	35%	1	100%	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
SYNM	23336	genome.wustl.edu	37	15	99673110	99673110	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145728.2	+1	reviewed	p.P1515H	0.125	153	0%	133	35.3%	0	-	-	-	-	NULL
LRRC28	123355	genome.wustl.edu	37	15	99874025	99874025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000450058	+1	known	p.A7T	0.000	27	0%	21	33.3%	0	-	-	-	-	NULL
ENSG00000214394	0	genome.wustl.edu	37	15	100332468	100332468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398270	+1	known	p.R56Q	1.000	81	0%	104	31.7%	0	-	-	-	-	NULL
ADAMTS17	170691	genome.wustl.edu	37	15	100533343	100533343	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139057.2	-1	reviewed	p.G953	0.993	54	0%	62	33.9%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS17	170691	genome.wustl.edu	37	15	100594183	100594183	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139057.2	-1	reviewed	p.G738	0.987	463	0%	387	30.5%	0	-	-	-	-	HMMPfam_ADAM_spacer1
CERS3	204219	genome.wustl.edu	37	15	101020246	101020246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178842.3	-1	validated	p.R138K	1.000	162	0%	141	26.2%	0	-	possibly_damaging(0.924)	tolerated(0.07)	deleterious(0.692)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724,superfamily_Homeodomain-like
LINS	55180	genome.wustl.edu	37	15	101115223	101115223	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040614.1	-1	reviewed	p.E200D	1.000	217	0%	191	27.2%	2	50%	possibly_damaging(0.738)	tolerated(0.35)	neutral(0.291)	NULL
ASB7	140460	genome.wustl.edu	37	15	101152580	101152580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198243.2	+1	reviewed	p.F53L	1.000	150	0%	101	35.6%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ALDH1A3	220	genome.wustl.edu	37	15	101432746	101432746	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000693.2	+1	reviewed	p.F126C	0.999	89	0%	64	26.6%	5	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ALDH1A3	220	genome.wustl.edu	37	15	101447434	101447434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000693.2	+1	reviewed	p.L448I	0.600	235	0%	194	25.8%	8	0%	benign(0.008)	tolerated(1)	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
LRRK1	79705	genome.wustl.edu	37	15	101565169	101565169	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024652.3	+1	validated	p.I743	0.875	100	0%	70	31.4%	4	0%	-	-	-	HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCSK6	5046	genome.wustl.edu	37	15	101853585	101853585	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000331826	-1	known	p.R898*	0.930	7	0.000	20	0.550	0	-	-	-	-	NULL
TARSL2	123283	genome.wustl.edu	37	15	102249050	102249050	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152334.2	-1	validated	p.K292	1.000	151	0%	142	28.9%	5	20%	-	-	-	superfamily_ThrRS/AlaRS common domain
OR4F15	390649	genome.wustl.edu	37	15	102358598	102358598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001674.1	+1	provisional	p.D70A	0.986	825	0%	691	27.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4F4	26682	genome.wustl.edu	37	15	102462415	102462415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004195.2	-1	provisional	p.R283M	0.985	1398	0%	1375	16.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
AXIN1	8312	genome.wustl.edu	37	16	343707	343707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003502.2	-1	reviewed	p.T656M	0.002	6	0.000	9	0.556	35	31.4%	benign(0.004)	tolerated(0.17)	neutral(0.059)	NULL
TPSD1	23430	genome.wustl.edu	37	16	1308189	1308189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012217.2	+1	reviewed	p.L217P	1.000	10	0%	13	61.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TELO2	9894	genome.wustl.edu	37	16	1544360	1544360	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016111.3	+1	reviewed	p.G26	0.000	67	0%	45	28.9%	17	47%	-	-	-	NULL
C16orf79	283870	genome.wustl.edu	37	16	2260805	2260805	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182563.2	-1	provisional	p.R10	0.000	11	0%	10	40%	0	-	-	-	-	NULL
CCNF	899	genome.wustl.edu	37	16	2481197	2481197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001761.2	+1	reviewed	p.R28Q	0.991	133	0%	93	31.2%	4	100%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF81383
CCNF	899	genome.wustl.edu	37	16	2506569	2506569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001761.2	+1	reviewed	p.D637N	0.857	13	0%	15	40%	15	26.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
PRSS27	83886	genome.wustl.edu	37	16	2765854	2765854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031948.3	-1	validated	p.R34Q	1.000	8	0.000	14	0.286	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SRRM2	23524	genome.wustl.edu	37	16	2815145	2815145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016333.3	+1	validated	p.S1539L	0.984	494	0%	450	30.9%	36	36.1%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2815891	2815891	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016333.3	+1	validated	p.R1788*	0.876	108	0%	121	16.5%	63	6.3%	-	-	-	NULL
THOC6	79228	genome.wustl.edu	37	16	3076099	3076099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024339.3	+1	validated	p.D86N	0.975	99	1%	88	31.8%	27	29.6%	possibly_damaging(0.948)	deleterious(0.04)	deleterious(0.740)	HMMSmart_SM00320,superfamily_WD40 repeat-like
THOC6	79228	genome.wustl.edu	37	16	3077604	3077604	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024339.3	+1	validated	p.C324	0.936	54	0%	40	17.5%	83	40.9%	-	-	-	superfamily_WD40 repeat-like
MEFV	4210	genome.wustl.edu	37	16	3304262	3304262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000243.2	-1	reviewed	p.A269V	0.000	154	0%	132	30.3%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
OR2C1	4993	genome.wustl.edu	37	16	3406813	3406813	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012368.2	+1	validated	p.T291	0.982	116	0%	124	29.8%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ZNF434	54925	genome.wustl.edu	37	16	3433363	3433363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017810.2	-1	provisional	p.K316T	0.975	207	0%	191	34.6%	7	57.1%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF174	7727	genome.wustl.edu	37	16	3458703	3458703	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003450.2	+1	validated	p.T336	0.000	117	0%	130	23.8%	5	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NAA60	79903	genome.wustl.edu	37	16	3533456	3533456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083600.1	+1	validated	p.N144S	1.000	58	0%	45	28.9%	49	26.5%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase
NLRC3	197358	genome.wustl.edu	37	16	3599183	3599183	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178844.2	-1	validated	p.I854	0.066	20	0%	19	31.6%	0	-	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
SLX4	84464	genome.wustl.edu	37	16	3656624	3656624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032444.2	-1	provisional	p.R204H	0.989	95	0%	114	41.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3790499	3790499	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004380.2	-1	reviewed	p.F1345C	1.000	78	0%	43	37.2%	5	40%	unknown(0)	deleterious(0)	-	HMMPfam_DUF906
CREBBP	1387	genome.wustl.edu	37	16	3820743	3820743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004380.2	-1	reviewed	p.P903H	0.999	74	0%	64	10.9%	11	9%	unknown(0)	deleterious(0.01)	-	NULL
ADCY9	115	genome.wustl.edu	37	16	4016880	4016880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001116.2	-1	reviewed	p.F986L	1.000	104	0%	91	30.8%	12	33.3%	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
ADCY9	115	genome.wustl.edu	37	16	4164464	4164464	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001116.2	-1	reviewed	p.K327T	1.000	65	0%	99	23.2%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00044
C16orf89	146556	genome.wustl.edu	37	16	5097883	5097883	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152459.3	-1	validated	p.F355	0.886	43	0%	40	27.5%	7	28.5%	-	-	-	NULL
ENSG00000221809	0	genome.wustl.edu	37	16	5313263	5313263	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000408882	-1	novel	NULL	0.050	165	0%	176	31.8%	0	-	-	-	-	-
RBFOX1	54715	genome.wustl.edu	37	16	7645640	7645640	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145891.2	+1	reviewed	p.I206	1.000	217	0%	174	25.9%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ABAT	18	genome.wustl.edu	37	16	8866748	8866748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000663.4	+1	reviewed	p.R310W	0.999	55	0%	54	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
LOC100132944	100132944	genome.wustl.edu	37	16	8942602	8942602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001716801.2	-1	model	p.R75H	0.000	2	0.000	4	1.000	54	29.6%	-	-	-	NULL
USP7	7874	genome.wustl.edu	37	16	8994476	8994476	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003470.2	-1	validated	p.P740	1.000	108	0%	68	22.1%	65	44.6%	-	-	-	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9923375	9923375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000833.3	-1	reviewed	p.A638T	1.000	168	0%	196	26%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIN2A	2903	genome.wustl.edu	37	16	10274158	10274158	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000833.3	-1	reviewed	p.A37	0.960	49	0%	55	29.1%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
TEKT5	146279	genome.wustl.edu	37	16	10721541	10721541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144674.1	-1	provisional	p.E453K	1.000	28	0%	39	35.9%	0	-	possibly_damaging(0.594)	deleterious(0.01)	deleterious(0.611)	HMMPfam_Tektin
FAM18A	780776	genome.wustl.edu	37	16	10867973	10867973	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079512.2	-1	predicted	p.R83	0.989	32	0%	32	34.4%	0	-	-	-	-	HMMPfam_DUF846
TXNDC11	51061	genome.wustl.edu	37	16	11778094	11778094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015914.5	-1	provisional	p.V721M	1.000	64	0%	48	29.2%	34	32.3%	possibly_damaging(0.637)	tolerated(0.09)	deleterious(0.519)	superfamily_Thiordxn-like_fd
RSL1D1	26156	genome.wustl.edu	37	16	11933603	11933603	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015659.2	-1	validated	p.I365	0.835	317	0%	346	24.9%	148	46.6%	-	-	-	NULL
RSL1D1	26156	genome.wustl.edu	37	16	11944198	11944198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015659.2	-1	validated	p.N61K	0.467	95	0%	105	25.7%	48	52%	benign(0.177)	tolerated(0.16)	neutral(0.076)	superfamily_Ribosomal protein L1
CPPED1	55313	genome.wustl.edu	37	16	12798557	12798557	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018340.2	-1	validated	p.I213	0.001	145	0.7%	159	25.2%	10	0%	-	-	-	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
ERCC4	2072	genome.wustl.edu	37	16	14029423	14029433	+	Frame_Shift_Del	DEL	GAATCCTGAAA	GAATCCTGAAA	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	GAATCCTGAAA	GAATCCTGAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005236.2	+1	reviewed	p.I546fs	0.998:0.092:0.313:0.823:0.805:0.879:0.917:0.885:0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NOMO1	23420	genome.wustl.edu	37	16	14983045	14983045	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014287.3	+1	reviewed	p.K1139	0.995	659	0%	577	25.5%	164	20.1%	-	-	-	NULL
NTAN1	123803	genome.wustl.edu	37	16	15141763	15141763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173474.2	-1	provisional	p.L67M	1.000	625	0%	522	30.5%	22	22.7%	possibly_damaging(0.946)	tolerated(0.17)	neutral(0.449)	NULL
RRN3	54700	genome.wustl.edu	37	16	15164990	15164990	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018427.3	-1	validated	p.F416C	1.000	271	0.4%	229	31%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRN3
KIAA0430	9665	genome.wustl.edu	37	16	15698057	15698057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014647.3	-1	validated	p.E1461K	1.000	289	0%	289	31.5%	6	66.6%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
MYH11	4629	genome.wustl.edu	37	16	15814759	15814759	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040114.1	-1	reviewed	p.F1583	0.630	205	0%	192	44.8%	14	0%	-	-	-	HMMPfam_Myosin_tail_1
MYH11	4629	genome.wustl.edu	37	16	15841986	15841986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040114.1	-1	reviewed	p.R707W	1.000	129	0.8%	145	44.1%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH11	4629	genome.wustl.edu	37	16	15870006	15870006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040114.1	-1	reviewed	p.R280H	1.000	334	0%	246	26.8%	5	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
ABCC6	368	genome.wustl.edu	37	16	16253370	16253370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001171.5	-1	reviewed	p.R1235Q	1.000	43	0%	49	30.6%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SMG1	23049	genome.wustl.edu	37	16	18827667	18827667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015092.4	-1	reviewed	p.R3420Q	1.000	92	1.1%	86	27.9%	3	66.6%	probably_damaging(0.989)	tolerated(0.16)	deleterious(0.499)	NULL
SMG1	23049	genome.wustl.edu	37	16	18840997	18840997	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015092.4	-1	reviewed	p.C3072G	1.000	134	0%	93	30.1%	1	100%	benign(0.082)	deleterious(0.02)	neutral(0.389)	NULL
SMG1	23049	genome.wustl.edu	37	16	18841544	18841544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015092.4	-1	reviewed	p.E2980D	1.000	88	0%	81	38.3%	2	100%	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
SMG1	23049	genome.wustl.edu	37	16	18853679	18853679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015092.4	-1	reviewed	p.E2106G	1.000	108	0%	105	31.4%	2	0%	benign(0.094)	tolerated(0.17)	neutral(0.066)	superfamily_Protein kinase-like (PK-like)
TMC7	79905	genome.wustl.edu	37	16	19020669	19020669	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024847.3	+1	validated	p.I81	0.000	306	0%	212	33.5%	3	66.6%	-	-	-	NULL
GDE1	51573	genome.wustl.edu	37	16	19516399	19516399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016641.3	-1	validated	p.R218W	0.995	172	0%	212	33%	63	42.8%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
CCP110	9738	genome.wustl.edu	37	16	19553358	19553358	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014711.4	+1	validated	p.S733	0.262	228	0%	218	26.6%	1	0%	-	-	-	NULL
GPR139	124274	genome.wustl.edu	37	16	20043219	20043219	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002911.2	-1	validated	p.L300	1.000	165	0%	157	36.9%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
UMOD	7369	genome.wustl.edu	37	16	20352411	20352411	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008389.1	-1	reviewed	e6+2	0.935	32	0%	53	32.1%	0	-	-	-	-	-
ACSM2B	348158	genome.wustl.edu	37	16	20566602	20566602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105069.1	-1	validated	p.K195N	0.019	795	0%	645	12.1%	0	-	benign(0.01)	tolerated(0.36)	neutral(0.021)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20787169	20787169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005622.3	+1	validated	p.K76N	1.000	270	0%	215	27.4%	0	-	possibly_damaging(0.942)	tolerated(0.16)	neutral(0.447)	superfamily_Acetyl-CoA synthetase-like
ERI2	112479	genome.wustl.edu	37	16	20802174	20802174	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080663.2	-1	validated	p.F271	0.000	123	0%	98	36.7%	0	-	-	-	-	NULL
ACSM3	6296	genome.wustl.edu	37	16	20803441	20803441	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005622.3	+1	validated	p.L482	1.000	235	0%	154	29.9%	5	20%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20803563	20803563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005622.3	+1	validated	p.R487Q	1.000	373	0.3%	225	33.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DNAH3	55567	genome.wustl.edu	37	16	20946730	20946730	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017539.1	-1	provisional	p.V3979	0.995	140	0%	106	27.4%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH3	55567	genome.wustl.edu	37	16	20999312	20999312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017539.1	-1	provisional	p.S2226L	0.356	197	0%	162	40.1%	0	-	possibly_damaging(0.623)	tolerated(0.12)	deleterious(0.478)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21014473	21014473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017539.1	-1	provisional	p.T2027A	1.000	262	0%	296	26.4%	0	-	benign(0.018)	tolerated(0.92)	neutral(0.001)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21145684	21145684	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017539.1	-1	provisional	p.P326	0.990	267	0%	339	30.4%	0	-	-	-	-	NULL
POLR3E	55718	genome.wustl.edu	37	16	22335726	22335726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018119.2	+1	validated	p.V374M	0.989	92	0%	41	34.1%	22	31.8%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Sin_N
HS3ST2	9956	genome.wustl.edu	37	16	22926579	22926579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006043.1	+1	reviewed	p.A267V	0.908	387	0%	413	31.2%	0	-	benign(0.221)	tolerated(0.06)	neutral(0.345)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
USP31	57478	genome.wustl.edu	37	16	23119490	23119490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020718.3	-1	validated	p.K216N	1.000	154	0%	86	32.6%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UCH,superfamily_Cysteine proteinases
SCNN1B	6338	genome.wustl.edu	37	16	23366722	23366722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000336.2	+1	reviewed	p.V230M	1.000	92	0%	105	29.5%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_ASC
COG7	91949	genome.wustl.edu	37	16	23428365	23428365	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153603.3	-1	reviewed	p.A405	0.036	98	0%	89	28.1%	9	33.3%	-	-	-	HMMPfam_COG7
GGA2	23062	genome.wustl.edu	37	16	23497460	23497460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015044.4	-1	reviewed	p.S225L	0.590	107	0%	103	34%	24	16.6%	possibly_damaging(0.907)	tolerated(0.46)	neutral(0.372)	HMMPfam_GAT,superfamily_SSF89009
EARS2	124454	genome.wustl.edu	37	16	23535717	23535717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083614.1	-1	provisional	p.R516Q	0.999	170	0%	170	14.7%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_tRNA-synt_bind
PLK1	5347	genome.wustl.edu	37	16	23700947	23700947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005030.3	+1	provisional	p.A520T	1.000	41	0%	41	29.3%	98	43.8%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	HMMPfam_POLO_box,superfamily_SSF82615
ERN2	10595	genome.wustl.edu	37	16	23713990	23713990	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033266.3	-1	validated	p.G344	0.985	139	0%	125	24%	3	0%	-	-	-	NULL
CHP2	63928	genome.wustl.edu	37	16	23768619	23768619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022097.2	+1	provisional	p.A171V	0.983	90	0%	112	37.5%	0	-	benign(0.091)	tolerated(0.47)	neutral(0.017)	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand
RBBP6	5930	genome.wustl.edu	37	16	24574599	24574599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006910.4	+1	reviewed	p.A457T	0.998	353	0%	325	30.5%	1	100%	unknown(0)	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24580274	24580274	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006910.4	+1	reviewed	p.R755*	1.000	117	0%	142	14.1%	5	0%	-	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24580461	24580461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006910.4	+1	reviewed	p.D817A	1.000	150	0%	173	28.9%	2	50%	probably_damaging(0.999)	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24582941	24582941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006910.4	+1	reviewed	p.E1518D	0.999	184	0%	173	30.1%	7	28.5%	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	NULL
ARHGAP17	55114	genome.wustl.edu	37	16	24971241	24971241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001006634.1	-1	validated	p.F211L	0.998	220	0%	212	26.4%	17	52.9%	benign(0.004)	tolerated(0.45)	neutral(0.012)	HMMPfam_BAR,HMMSmart_SM00721
ARHGAP17	55114	genome.wustl.edu	37	16	24980032	24980032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001006634.1	-1	validated	p.E112K	1.000	270	0%	205	33.2%	13	15.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAR,HMMSmart_SM00721
AQP8	343	genome.wustl.edu	37	16	25235781	25235781	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001169.2	+1	reviewed	p.I162	0.957	41	0%	33	45.5%	0	-	-	-	-	HMMPfam_MIP,superfamily_MIP
ZKSCAN2	342357	genome.wustl.edu	37	16	25266548	25266548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012981.4	-1	validated	p.R189C	0.002	81	0%	52	32.7%	1	0%	benign(0.023)	deleterious(0.03)	neutral(0.365)	NULL
C16orf82	162083	genome.wustl.edu	37	16	27078644	27078644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145545.1	+1	validated	p.R110W	0.000	24	0%	24	16.7%	0	-	-	-	-	NULL
JMJD5	79831	genome.wustl.edu	37	16	27226253	27226253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145348.1	+1	reviewed	p.S279L	1.000	79	0%	45	22.2%	1	0%	benign(0.106)	tolerated(0.1)	neutral(0.294)	superfamily_SSF51197
IL4R	3566	genome.wustl.edu	37	16	27374931	27374931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000418.2	+1	reviewed	p.S753L	0.000	97	0%	68	13.2%	6	0%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
IL21R	50615	genome.wustl.edu	37	16	27454356	27454356	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021798.2	+1	reviewed	p.Y142	0.018	129	0%	129	31.8%	3	0%	-	-	-	superfamily_Fibronectin type III
GTF3C1	2975	genome.wustl.edu	37	16	27539931	27539931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001520.3	-1	validated	p.K321E	1.000	467	0%	453	33.3%	12	8.3%	probably_damaging(0.996)	tolerated(0.89)	neutral(0.462)	HMMPfam_B-block_TFIIIC
KIAA0556	23247	genome.wustl.edu	37	16	27720130	27720130	+	Silent	SNP	C	C	T	rs185968091	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015202.2	+1	validated	p.V498	0.121	102	0%	101	52.5%	5	20%	-	-	-	superfamily_Galactose-binding domain-like
ENSG00000196585	0	genome.wustl.edu	37	16	28426220	28426220	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000357646	+1	known	p.I155	0.616	75	0%	71	39.4%	0	-	-	-	-	HMMPfam_CDC37_C
RABEP2	79874	genome.wustl.edu	37	16	28925593	28925593	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024816.2	-1	validated	p.L286	0.036	19	0%	12	50%	10	40%	-	-	-	NULL
RRN3P2	653390	genome.wustl.edu	37	16	29098689	29098689	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000219758	+1	known	p.K210T	1.000	78	0%	76	35.5%	4	0%	unknown(0)	-	-	NULL
QPRT	23475	genome.wustl.edu	37	16	29708709	29708709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014298.3	+1	reviewed	p.A291T	0.000	62	1.6%	55	41.8%	92	32.6%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
MVP	9961	genome.wustl.edu	37	16	29845106	29845106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005115.3	+1	reviewed	p.A125V	1.000	81	0%	82	24.4%	182	35.1%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	HMMPfam_Vault
TAOK2	9344	genome.wustl.edu	37	16	29989126	29989126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016151.2	+1	validated	p.K11N	1.000	157	0%	134	33.6%	20	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPP4C	5531	genome.wustl.edu	37	16	30094139	30094139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002720.1	+1	provisional	p.E92K	1.000	84	0%	67	35.8%	265	33.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
STX1B	112755	genome.wustl.edu	37	16	31004717	31004717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052874.3	-1	validated	p.R209H	0.998	126	0%	101	34.7%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
LOC100288951	100288951	genome.wustl.edu	37	16	31173795	31173795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343469.1	+1	model	p.E60D	1.000	68	0%	92	26.1%	0	-	-	-	-	HMMPfam_Ribosomal_L38e
ITGAM	3684	genome.wustl.edu	37	16	31341692	31341692	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000632.3	+1	reviewed	p.E1042*	0.000	269	0%	236	31.8%	10	0%	-	-	-	NULL
ITGAX	3687	genome.wustl.edu	37	16	31391864	31391864	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000887.3	+1	reviewed	p.S1065	0.000	55	0%	61	18%	10	0%	-	-	-	NULL
C16orf58	64755	genome.wustl.edu	37	16	31504904	31504904	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430477	-1	known	p.L184	0.007	25	0%	22	18.2%	0	-	-	-	-	HMMPfam_DUF647
ZNF267	10308	genome.wustl.edu	37	16	31925807	31925807	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003414.4	+1	validated	p.S79	0.160	146	0%	139	12.9%	3	0%	-	-	-	NULL
ZNF267	10308	genome.wustl.edu	37	16	31926190	31926190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003414.4	+1	validated	p.R207Q	0.023	151	0%	157	26.8%	6	50%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
ZNF267	10308	genome.wustl.edu	37	16	31927374	31927374	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003414.4	+1	validated	p.K602Q	1.000	138	0%	126	25.4%	5	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_C2H2 and C2HC zinc fingers
LOC100132941	100132941	genome.wustl.edu	37	16	33006541	33006541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001718037.2	+1	model	p.Q22P	0.997	325	0%	217	25.3%	0	-	possibly_damaging(0.713)	deleterious(0)	deleterious(0.702)	HMMPfam_V-set,superfamily_Immunoglobulin
SHCBP1	79801	genome.wustl.edu	37	16	46615713	46615713	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024745.4	-1	validated	p.E649	0.998	596	0%	538	28.8%	17	52.9%	-	-	-	NULL
DNAJA2	10294	genome.wustl.edu	37	16	46993025	46993025	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005880.3	-1	reviewed	p.R313*	1.000	87	0%	98	36.7%	25	0%	-	-	-	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
ITFG1	81533	genome.wustl.edu	37	16	47399769	47399769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030790.3	-1	provisional	p.F244L	0.998	154	0%	97	32%	37	51.3%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
PHKB	5257	genome.wustl.edu	37	16	47684814	47684814	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000293.2	+1	reviewed	p.V651	0.997	372	0%	302	31.1%	37	32.4%	-	-	-	HMMPfam_PHK_AB
ABCC12	94160	genome.wustl.edu	37	16	48141283	48141283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033226.2	-1	reviewed	p.A809T	0.979	156	0%	131	34.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC12	94160	genome.wustl.edu	37	16	48145803	48145803	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033226.2	-1	reviewed	p.E670*	0.986	102	0%	91	28.6%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC11	85320	genome.wustl.edu	37	16	48247384	48247384	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032583.3	-1	reviewed	p.T442	0.000	154	0%	131	33.6%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC11	85320	genome.wustl.edu	37	16	48248844	48248844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032583.3	-1	reviewed	p.A399V	0.000	120	0%	121	28.9%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LONP2	83752	genome.wustl.edu	37	16	48311278	48311278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031490.2	+1	provisional	p.R424H	1.000	235	0%	222	29.7%	30	36.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
N4BP1	9683	genome.wustl.edu	37	16	48595367	48595367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153029.3	-1	validated	p.E396G	0.122	139	0%	118	21.2%	8	25%	benign(0.235)	tolerated(0.24)	neutral(0.061)	NULL
HEATR3	55027	genome.wustl.edu	37	16	50104137	50104137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182922.2	+1	provisional	p.D150Y	0.989	90	0%	74	17.6%	3	0%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	superfamily_ARM repeat
NOD2	64127	genome.wustl.edu	37	16	50744871	50744871	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022162.1	+1	reviewed	p.F350C	1.000	66	0%	76	28.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NOD2	64127	genome.wustl.edu	37	16	50765663	50765663	+	Missense_Mutation	SNP	G	G	A	rs5743295	byCluster;byFrequency	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022162.1	+1	reviewed	p.R1019Q	1.000	106	0%	100	33%	2	100%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_RNI-like
CYLD	1540	genome.wustl.edu	37	16	50813676	50813676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015247.2	+1	reviewed	p.E413D	1.000	333	0%	370	27%	11	27.2%	benign(0.032)	tolerated(0.28)	neutral(0.033)	NULL
CYLD	1540	genome.wustl.edu	37	16	50828274	50828274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015247.2	+1	reviewed	p.A874D	1.000	144	0%	148	29.7%	18	27.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_UCH,superfamily_Cysteine proteinases
SALL1	6299	genome.wustl.edu	37	16	51171056	51171056	+	Silent	SNP	G	G	A	rs189411650	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002968.2	-1	reviewed	p.F1314	1.000	83	0%	54	24.1%	12	66.6%	-	-	-	NULL
SALL1	6299	genome.wustl.edu	37	16	51176030	51176030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002968.2	-1	reviewed	p.R35C	1.000	477	0%	351	26.5%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
TOX3	27324	genome.wustl.edu	37	16	52480118	52480118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080430.2	-1	reviewed	p.R232G	1.000	139	0%	135	28.9%	3	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TOX3	27324	genome.wustl.edu	37	16	52497890	52497890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080430.2	-1	reviewed	p.L122I	1.000	204	0%	148	35.8%	9	44.4%	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	NULL
CHD9	80205	genome.wustl.edu	37	16	53358283	53358283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025134.4	+1	validated	p.L2708M	1.000	215	0%	165	18.8%	3	0%	unknown(0)	tolerated(0.4)	-	NULL
CHD9	80205	genome.wustl.edu	37	16	53358767	53358767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025134.4	+1	validated	p.S2869L	0.997	77	0%	61	27.9%	3	33.3%	unknown(0)	deleterious(0.02)	-	NULL
LOC643802	643802	genome.wustl.edu	37	16	53404670	53404670	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001719265.1	-1	model	p.E140*	1.000	91	0%	88	30.7%	0	-	-	-	-	HMMPfam_Mpp10
LOC643802	643802	genome.wustl.edu	37	16	53404736	53404736	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001719265.1	-1	model	p.E118*	0.954	105	0%	90	24.4%	0	-	-	-	-	HMMPfam_Mpp10
RPGRIP1L	23322	genome.wustl.edu	37	16	53690420	53690420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015272.2	-1	reviewed	p.L555I	1.000	153	0%	113	25.7%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53709010	53709010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015272.2	-1	reviewed	p.E267D	1.000	77	0%	64	40.6%	0	-	benign(0.159)	tolerated(0.35)	neutral(0.035)	NULL
IRX5	10265	genome.wustl.edu	37	16	54966704	54966704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005853.5	+1	validated	p.R182W	1.000	81	0%	64	29.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IRX5	10265	genome.wustl.edu	37	16	54967712	54967712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005853.5	+1	validated	p.L460S	1.000	189	0.5%	109	35.8%	0	-	unknown(0)	deleterious(0.01)	-	NULL
IRX6	79190	genome.wustl.edu	37	16	55362963	55362963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024335.2	+1	validated	p.A358V	0.990	50	0%	40	35%	0	-	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	HMMSmart_SM00548
MMP2	4313	genome.wustl.edu	37	16	55536702	55536702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004530.4	+1	reviewed	p.V594A	0.985	105	1%	94	36.2%	150	8.6%	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
CES1	1066	genome.wustl.edu	37	16	55855282	55855282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025195.1	-1	reviewed	p.L231I	0.995	75	0%	63	27%	7	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_COesterase,superfamily_SSF53474
CES5A	221223	genome.wustl.edu	37	16	55899944	55899944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143685.1	-1	validated	p.F212L	0.785	77	0%	80	36.2%	0	-	benign(0.291)	tolerated(0.57)	neutral(0.096)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
GNAO1	2775	genome.wustl.edu	37	16	56385325	56385325	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020988.2	+1	validated	p.F251	1.000	33	0%	31	22.6%	0	-	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
GNAO1	2775	genome.wustl.edu	37	16	56385349	56385349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020988.2	+1	validated	p.F259L	1.000	46	0%	27	37%	0	-	benign(0.018)	deleterious(0)	neutral(0.445)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
BBS2	583	genome.wustl.edu	37	16	56530924	56530924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031885.3	-1	reviewed	p.R622Q	1.000	552	0%	414	29.5%	15	73.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SLC12A3	6559	genome.wustl.edu	37	16	56920292	56920292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000339.2	+1	reviewed	p.L648F	1.000	39	0%	34	23.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NLRC5	84166	genome.wustl.edu	37	16	57089363	57089363	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032206.3	+1	validated	p.S1226	0.258	82	0%	62	19.4%	4	25%	-	-	-	superfamily_RNI-like
FAM192A	80011	genome.wustl.edu	37	16	57206180	57206180	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024946.2	-1	validated	p.E111*	1.000	321	0%	280	32.9%	19	0%	-	-	-	HMMPfam_Nefa_Nip30_N
FAM192A	80011	genome.wustl.edu	37	16	57206210	57206210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024946.2	-1	validated	p.E101K	1.000	288	0%	247	30.8%	25	72%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Nefa_Nip30_N
GPR97	222487	genome.wustl.edu	37	16	57707292	57707292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_170776.4	+1	validated	p.D40N	0.000	41	0%	40	22.5%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
C16orf80	29105	genome.wustl.edu	37	16	58149954	58149954	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013242.2	-1	validated	p.F89	0.991	104	1%	105	18.1%	40	15%	-	-	-	HMMPfam_DUF667
SETD6	79918	genome.wustl.edu	37	16	58551964	58551964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024860.2	+1	validated	p.R244W	0.999	53	0%	50	32%	7	28.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_SET,superfamily_SET domain
CNOT1	23019	genome.wustl.edu	37	16	58571098	58571098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016284.3	-1	validated	p.R1814Q	1.000	280	0%	267	28.8%	39	48.7%	probably_damaging(0.967)	tolerated(0.26)	neutral(0.443)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58577534	58577534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016284.3	-1	validated	p.N1471H	1.000	180	0%	176	32.4%	39	28.2%	probably_damaging(0.984)	tolerated(0.07)	deleterious(0.750)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58615359	58615359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016284.3	-1	validated	p.R369C	1.000	83	0%	86	34.9%	10	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CDH8	1006	genome.wustl.edu	37	16	61689449	61689449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001796.2	-1	reviewed	p.E611K	1.000	125	0%	128	22.7%	0	-	possibly_damaging(0.915)	tolerated(0.13)	deleterious(0.619)	NULL
TK2	7084	genome.wustl.edu	37	16	66575837	66575837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004614.4	-1	reviewed	p.I101T	1.000	186	0%	168	27.4%	6	50%	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CKLF	51192	genome.wustl.edu	37	16	66597100	66597100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016951.2	+1	reviewed	p.T105A	0.000	165	0%	132	37.1%	74	33.7%	benign(0.052)	tolerated(0.16)	neutral(0.062)	HMMPfam_MARVEL
CMTM1	113540	genome.wustl.edu	37	16	66603922	66603922	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052999.3	+1	reviewed	p.C172	0.666	277	0%	224	28.1%	0	-	-	-	-	HMMPfam_MARVEL
NAE1	8883	genome.wustl.edu	37	16	66839819	66839819	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003905.3	-1	reviewed	p.E481*	1.000	174	0%	135	22.2%	78	38.4%	-	-	-	superfamily_Activating enzymes of the ubiquitin-like proteins
CDH16	1014	genome.wustl.edu	37	16	66946321	66946321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004062.2	-1	reviewed	p.S458R	0.237	76	0%	72	22.2%	0	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMPfam_Cadherin,superfamily_Cadherin-like
C16orf70	80262	genome.wustl.edu	37	16	67159935	67159935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025187.3	+1	provisional	p.Q74P	1.000	121	0%	111	40.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0183
B3GNT9	84752	genome.wustl.edu	37	16	67183680	67183680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033309.2	-1	validated	p.G237R	0.996	36	0%	27	29.6%	7	0%	benign(0.005)	tolerated(0.53)	neutral(0.007)	HMMPfam_Galactosyl_T
E2F4	1874	genome.wustl.edu	37	16	67231533	67231533	+	Silent	SNP	C	C	A	rs189616961	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001950.3	+1	reviewed	p.I355	1.000	32	0%	25	44%	47	31.9%	-	-	-	NULL
LRRC29	26231	genome.wustl.edu	37	16	67242303	67242303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004055.1	-1	reviewed	p.P66L	0.725	68	0%	53	24.5%	0	-	probably_damaging(0.99)	tolerated(0.41)	neutral(0.457)	superfamily_RNI-like
SLC9A5	6553	genome.wustl.edu	37	16	67290570	67290570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004594.2	+1	validated	p.F370L	1.000	88	0%	81	23.5%	0	-	possibly_damaging(0.476)	tolerated(0.12)	neutral(0.417)	HMMPfam_Na_H_Exchanger
TPPP3	51673	genome.wustl.edu	37	16	67424182	67424182	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015964.2	-1	validated	p.S142	0.994	134	0%	95	29.5%	89	43.8%	-	-	-	HMMPfam_p25-alpha
TSNAXIP1	55815	genome.wustl.edu	37	16	67861750	67861750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018430.2	+1	validated	p.A611T	1.000	89	0%	76	39.5%	4	25%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
LCAT	3931	genome.wustl.edu	37	16	67974157	67974157	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000229.1	-1	reviewed	p.L325	0.034	26	0%	28	28.6%	5	20%	-	-	-	HMMPfam_LACT,superfamily_alpha/beta-Hydrolases
NFATC3	4775	genome.wustl.edu	37	16	68156606	68156606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173165.1	+1	reviewed	p.R274W	1.000	180	0%	146	33.6%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC7A6	9057	genome.wustl.edu	37	16	68308818	68308818	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001076785.1	+1	validated	p.I63	1.000	141	0%	127	35.4%	3	66.6%	-	-	-	HMMPfam_AA_permease
ZFP90	146198	genome.wustl.edu	37	16	68598284	68598284	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133458.2	+1	provisional	p.E532*	1.000	215	0.5%	272	27.6%	11	9%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CDH1	999	genome.wustl.edu	37	16	68844193	68844193	+	Missense_Mutation	SNP	G	G	A	rs121964873		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004360.3	+1	reviewed	p.E261K	0.000	284	0%	228	26.8%	82	48.7%	benign(0.054)	tolerated(0.49)	neutral(0.014)	superfamily_Cadherin-like
TMCO7	79613	genome.wustl.edu	37	16	68894095	68894095	+	Missense_Mutation	SNP	G	G	A	rs184844958	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024562.1	+1	validated	p.D135N	0.999	221	0%	200	29%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CIRH1A	84916	genome.wustl.edu	37	16	69177144	69177144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032830.2	+1	reviewed	p.I197T	1.000	143	0%	203	12.8%	23	21.7%	benign(0.248)	deleterious(0.01)	neutral(0.431)	HMMSmart_SM00320,superfamily_WD40 repeat-like
NIP7	51388	genome.wustl.edu	37	16	69374105	69374105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016101.3	+1	validated	p.I51S	0.998	90	0%	81	24.7%	26	7.6%	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_Pre-PUA domain
TMED6	146456	genome.wustl.edu	37	16	69381711	69381711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144676.3	-1	validated	p.D157Y	0.999	436	0%	401	29.2%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_EMP24_GP25L
NFAT5	10725	genome.wustl.edu	37	16	69681372	69681372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138713.2	+1	reviewed	p.R232Q	1.000	135	0.7%	112	14.3%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
NFAT5	10725	genome.wustl.edu	37	16	69727466	69727466	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138713.2	+1	reviewed	p.Q1246H	1.000	319	0%	238	26.9%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
NFAT5	10725	genome.wustl.edu	37	16	69729217	69729217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138713.2	+1	reviewed	p.K1531N	1.000	337	0%	214	34.1%	3	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DDX19B	11269	genome.wustl.edu	37	16	70359544	70359544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007242.4	+1	reviewed	p.K187T	1.000	313	0%	236	34.7%	29	37.9%	benign(0.229)	deleterious(0.03)	neutral(0.388)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
HYDIN	54768	genome.wustl.edu	37	16	70954969	70954969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032821.2	-1	validated	p.D2436G	0.957	255	0%	240	30.4%	0	-	possibly_damaging(0.85)	deleterious(0.01)	deleterious(0.733)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71008114	71008114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032821.2	-1	validated	p.L1666F	0.797	47	0%	59	23.7%	0	-	possibly_damaging(0.819)	tolerated(0.19)	neutral(0.359)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71065771	71065771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032821.2	-1	validated	p.P860H	1.000	179	0%	187	22.5%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71196558	71196558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032821.2	-1	validated	p.A198T	1.000	216	0%	199	24.1%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_PapD-like
HYDIN	54768	genome.wustl.edu	37	16	71212836	71212836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032821.2	-1	validated	p.D126Y	1.000	166	0%	134	25.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FTSJD1	55783	genome.wustl.edu	37	16	71319312	71319312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099642.1	-1	validated	p.A171V	1.000	289	0.3%	321	19.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CALB2	794	genome.wustl.edu	37	16	71416660	71416660	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001740.3	+1	reviewed	p.I127	0.976	347	0%	313	26.5%	21	61.9%	-	-	-	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
CALB2	794	genome.wustl.edu	37	16	71419500	71419500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007088.2	+1	reviewed	p.T185M	0.993	158	0%	152	23%	22	36.3%	unknown(0)	-	-	NULL
ZNF19	7567	genome.wustl.edu	37	16	71509656	71509656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006961.3	-1	reviewed	p.R265I	1.000	244	0%	205	29.8%	1	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PHLPP2	23035	genome.wustl.edu	37	16	71712814	71712814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015020.2	-1	validated	p.S371F	1.000	175	0%	178	25.8%	0	-	benign(0.206)	deleterious(0.03)	neutral(0.385)	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
AP1G1	164	genome.wustl.edu	37	16	71806935	71806935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000450149	-1	known	p.N164H	0.012	17	0%	21	23.8%	0	-	benign(0.009)	tolerated(0.11)	neutral(0.272)	NULL
IST1	9798	genome.wustl.edu	37	16	71961550	71961550	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014761.2	+1	provisional	p.F311V	0.935	209	0%	191	29.3%	85	47%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
HP	3240	genome.wustl.edu	37	16	72094425	72094425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005143.3	+1	reviewed	p.R286Q	0.975	128	0%	134	34.3%	5	40%	benign(0.007)	tolerated(0.4)	neutral(0.016)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PMFBP1	83449	genome.wustl.edu	37	16	72162649	72162649	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031293.2	-1	validated	p.L665	0.044	135	0%	154	13.6%	0	-	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72821425	72821425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006885.3	-1	reviewed	p.A3584T	1.000	46	0%	53	24.5%	4	25%	unknown(0)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72828148	72828148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006885.3	-1	reviewed	p.E2811D	1.000	137	0%	113	36.3%	10	60%	possibly_damaging(0.597)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72832265	72832265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006885.3	-1	reviewed	p.R1439Q	1.000	411	0%	422	35.3%	5	60%	unknown(0)	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72832575	72832575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006885.3	-1	reviewed	p.A1336T	0.061	194	0%	140	27.1%	7	28.5%	unknown(0)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72923722	72923722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006885.3	-1	reviewed	p.R1119Q	1.000	151	0%	133	35.3%	1	100%	unknown(0)	-	-	HMMSmart_SM00451
PSMD7	5713	genome.wustl.edu	37	16	74338218	74338218	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002811.3	+1	reviewed	p.S152	0.679	188	0%	129	24%	127	37.7%	-	-	-	NULL
GABARAPL2	11345	genome.wustl.edu	37	16	75611244	75611244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007285.6	+1	validated	p.G111R	1.000	137	0%	134	23.1%	150	29.3%	benign(0.193)	deleterious(0.04)	neutral(0.367)	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
CNTNAP4	85445	genome.wustl.edu	37	16	76501292	76501292	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033401.3	+1	reviewed	p.L509S	0.006	75	0%	52	32.7%	0	-	-	-	-	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76573639	76573639	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138994.3	+1	validated	p.L1009	1.000	92	0%	52	13.5%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ADAMTS18	170692	genome.wustl.edu	37	16	77327076	77327076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199355.2	-1	reviewed	p.S1029N	1.000	157	0%	136	33.1%	1	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
VAT1L	57687	genome.wustl.edu	37	16	77896699	77896699	+	Missense_Mutation	SNP	A	A	G	rs74414030		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020927.1	+1	provisional	p.T212A	1.000	222	0%	194	22.7%	0	-	benign(0.082)	deleterious(0.04)	neutral(0.355)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-bd
CLEC3A	10143	genome.wustl.edu	37	16	78064469	78064469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005752.3	+1	validated	p.D109N	0.750	162	0%	160	28.7%	0	-	benign(0.003)	tolerated(0.55)	neutral(0.007)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
CLEC3A	10143	genome.wustl.edu	37	16	78064556	78064556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005752.3	+1	validated	p.E138K	1.000	152	0%	176	10.8%	0	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
CDYL2	124359	genome.wustl.edu	37	16	80646529	80646529	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152342.2	-1	validated	p.V404	0.958	69	0%	35	37.1%	2	0%	-	-	-	HMMPfam_ECH,superfamily_SSF52096
ATMIN	23300	genome.wustl.edu	37	16	81077373	81077373	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015251.2	+1	validated	p.F424V	0.001	206	0%	200	31.5%	22	31.8%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ATMIN	23300	genome.wustl.edu	37	16	81078017	81078017	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015251.2	+1	validated	p.I638	0.496	115	0%	147	62.6%	60	78.3%	-	-	-	NULL
GCSH	2653	genome.wustl.edu	37	16	81124262	81124262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004483.4	-1	reviewed	p.E58K	1.000	61	0%	56	14.3%	21	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCV_H,superfamily_Single hybrid motif
PKD1L2	114780	genome.wustl.edu	37	16	81145838	81145838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052892.3	-1	reviewed	p.A2305T	0.909	286	0%	295	29.5%	0	-	unknown(0)	-	-	NULL
GAN	8139	genome.wustl.edu	37	16	81385286	81385286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022041.3	+1	reviewed	p.Y89C	1.000	137	0%	114	31.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
GAN	8139	genome.wustl.edu	37	16	81397413	81397413	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022041.3	+1	reviewed	p.F367	0.999	214	0%	198	24.7%	3	33.3%	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
PLCG2	5336	genome.wustl.edu	37	16	81939065	81939065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002661.2	+1	validated	p.E474K	0.998	47	0%	41	51.2%	6	33.3%	benign(0.271)	tolerated(0.75)	neutral(0.031)	superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729
CDH13	1012	genome.wustl.edu	37	16	83816966	83816966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001257.3	+1	reviewed	p.L675I	1.000	103	0%	118	33.9%	3	0%	possibly_damaging(0.922)	tolerated(0.3)	neutral(0.400)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
MBTPS1	8720	genome.wustl.edu	37	16	84108262	84108262	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003791.2	-1	reviewed	p.P511	0.972	79	0%	69	40.6%	57	47.3%	-	-	-	NULL
KCNG4	93107	genome.wustl.edu	37	16	84270958	84270958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172347.1	-1	reviewed	p.R45Q	0.995	77	0%	60	31.7%	0	-	benign(0.109)	tolerated(0.58)	neutral(0.014)	NULL
KLHL36	79786	genome.wustl.edu	37	16	84695223	84695223	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024731.2	+1	provisional	p.F445	0.020	31	0%	19	47.4%	16	25%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
USP10	9100	genome.wustl.edu	37	16	84793794	84793794	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005153.2	+1	reviewed	p.I489	0.043	56	0%	41	26.8%	45	42.2%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
KIAA0513	9764	genome.wustl.edu	37	16	85111141	85111141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014732.2	+1	validated	p.R229W	1.000	34	0%	21	42.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM92B	339145	genome.wustl.edu	37	16	85135934	85135934	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198491.1	-1	predicted	e7-1	1.000	55	0%	59	28.8%	0	-	-	-	-	-
COX4I1	1327	genome.wustl.edu	37	16	85839437	85839437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001861.2	+1	reviewed	p.T114A	1.000	49	0%	49	55.1%	1605	47.4%	possibly_damaging(0.525)	tolerated(0.16)	neutral(0.236)	HMMPfam_COX4,superfamily_Mitochondrial cytochrome c oxidase subunit IV
ZC3H18	124245	genome.wustl.edu	37	16	88666326	88666326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144604.3	+1	validated	p.S353Y	1.000	102	0%	58	34.5%	18	50%	unknown(0)	tolerated(0.21)	-	NULL
TUBB3	10381	genome.wustl.edu	37	16	90001203	90001203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006086.2	+1	validated	p.S115L	1.000	25	0%	27	37%	343	49.2%	possibly_damaging(0.469)	deleterious(0.01)	deleterious(0.559)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
DEF8	54849	genome.wustl.edu	37	16	90030919	90030919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207514.1	+1	validated	p.D458N	1.000	5	0.000	7	0.571	9	33.3%	probably_damaging(0.985)	tolerated(0.09)	deleterious(0.728)	HMMSmart_SM00109,superfamily_Cysteine-rich domain
YWHAE	7531	genome.wustl.edu	37	17	1248772	1248772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006761.4	-1	reviewed	p.A246V	1.000	304	0%	304	13.8%	999	22.8%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
PITPNA	5306	genome.wustl.edu	37	17	1451668	1451668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006224.3	-1	reviewed	p.F71L	0.995	90	0%	94	46.8%	38	42.1%	benign(0.037)	tolerated(0.06)	neutral(0.325)	HMMPfam_IP_trans,superfamily_SSF55961
SMYD4	114826	genome.wustl.edu	37	17	1703413	1703413	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052928.2	-1	validated	p.V425	1.000	168	0%	194	23.7%	1	100%	-	-	-	superfamily_SET domain
SRR	63826	genome.wustl.edu	37	17	2218856	2218856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021947.1	+1	provisional	p.M1T	1.000	576	0%	469	21.5%	4	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SRR	63826	genome.wustl.edu	37	17	2221167	2221167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021947.1	+1	provisional	p.R58C	0.998	298	0%	261	30.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_DEHYDRATASE_SER_THR,HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
METTL16	79066	genome.wustl.edu	37	17	2324179	2324179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024086.3	-1	validated	p.R303I	1.000	255	0%	210	34.3%	7	28.5%	possibly_damaging(0.541)	tolerated(0.12)	neutral(0.444)	NULL
OR1D4	653166	genome.wustl.edu	37	17	2966244	2966244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003552.2	-1	provisional	p.R238C	0.000	141	0%	133	27.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1D2	4991	genome.wustl.edu	37	17	2995760	2995760	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002548.2	-1	validated	p.I177	0.938	220	0%	241	26.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1G1	8390	genome.wustl.edu	37	17	3030189	3030189	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003555.1	-1	provisional	p.T219	0.000	228	0%	206	32.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1A2	26189	genome.wustl.edu	37	17	3101425	3101425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012352.1	+1	provisional	p.V205I	0.004	475	0%	554	35.9%	0	-	benign(0.022)	tolerated(0.73)	neutral(0.003)	HMMPfam_7tm_1,superfamily_SSF81321
OR1A2	26189	genome.wustl.edu	37	17	3101505	3101505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012352.1	+1	provisional	p.K231N	0.011	427	0%	465	34%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_7tm_1,superfamily_SSF81321
OR3A2	4995	genome.wustl.edu	37	17	3181778	3181778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002551.3	-1	validated	p.R151M	0.001	386	0%	394	13.7%	0	-	benign(0.257)	tolerated(0.23)	neutral(0.068)	HMMPfam_7tm_1,superfamily_SSF81321
OR1E1	8387	genome.wustl.edu	37	17	3300772	3300772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003553.2	-1	validated	p.F311L	0.000	374	0%	409	23.2%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
OR1E1	8387	genome.wustl.edu	37	17	3301056	3301056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003553.2	-1	validated	p.S217P	0.978	300	0%	374	26.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR1E1	8387	genome.wustl.edu	37	17	3301250	3301250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003553.2	-1	validated	p.T152N	0.025	239	0%	292	29.5%	0	-	benign(0.041)	tolerated(0.07)	neutral(0.322)	HMMPfam_7tm_1,superfamily_SSF81321
SHPK	23729	genome.wustl.edu	37	17	3527407	3527407	+	Silent	SNP	C	C	T	rs151048982	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013276.2	-1	reviewed	p.P143	0.846	43	0%	61	39.3%	1	0%	-	-	-	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain
GSG2	83903	genome.wustl.edu	37	17	3627970	3627970	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031965.2	+1	validated	p.G247	0.001	102	0%	99	23.2%	2	50%	-	-	-	NULL
ITGAE	3682	genome.wustl.edu	37	17	3657172	3657172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002208.4	-1	reviewed	p.A478T	0.033	124	0%	137	48.9%	1	0%	probably_damaging(0.99)	tolerated(0.18)	deleterious(0.497)	HMMSmart_Int_alpha,superfamily_SSF69318
ANKFY1	51479	genome.wustl.edu	37	17	4109626	4109626	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016376.3	-1	validated	p.G296	1.000	175	0%	212	29.7%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ZMYND15	84225	genome.wustl.edu	37	17	4648541	4648541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136046.1	+1	provisional	p.S643N	1.000	156	0%	135	11.9%	2	0%	probably_damaging(0.987)	tolerated(0.4)	neutral(0.453)	NULL
VMO1	284013	genome.wustl.edu	37	17	4688750	4688750	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182566.2	-1	validated	p.G172	0.017	52	0%	38	26.3%	16	0%	-	-	-	HMMPfam_VOMI,superfamily_VOMI
PSMB6	5694	genome.wustl.edu	37	17	4700779	4700779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002798.1	+1	reviewed	p.D73N	0.997	256	0.4%	310	36.5%	279	43.7%	benign(0.111)	deleterious(0.02)	neutral(0.392)	HMMPfam_Proteasome,PatternScan_PROTEASOME_B,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
MINK1	50488	genome.wustl.edu	37	17	4796799	4796799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153827.4	+1	reviewed	p.S824L	0.998	21	0%	21	28.6%	26	23%	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
CAMTA2	23125	genome.wustl.edu	37	17	4885027	4885027	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015099.3	-1	validated	p.R171*	1.000	198	0%	225	19.1%	7	0%	-	-	-	NULL
SLC52A1	55065	genome.wustl.edu	37	17	4936874	4936874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001104577.1	-1	validated	p.S304P	0.995	49	0%	54	24.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1011
ZFP3	124961	genome.wustl.edu	37	17	4994875	4994875	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153018.2	+1	validated	p.E26*	0.015	150	0%	110	23.6%	0	-	-	-	-	NULL
ZFP3	124961	genome.wustl.edu	37	17	4995427	4995427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153018.2	+1	validated	p.S210A	1.000	214	0%	158	24.7%	0	-	probably_damaging(0.973)	tolerated(0.17)	deleterious(0.474)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP3	124961	genome.wustl.edu	37	17	4995549	4995549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153018.2	+1	validated	p.E250D	1.000	191	0%	173	28.3%	0	-	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	superfamily_C2H2 and C2HC zinc fingers
ZFP3	124961	genome.wustl.edu	37	17	4995617	4995617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153018.2	+1	validated	p.R273I	1.000	167	0%	139	28.8%	0	-	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
USP6	9098	genome.wustl.edu	37	17	5049395	5049395	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004505.2	+1	validated	p.K749Q	1.000	121	0%	125	35.2%	3	0%	benign(0.325)	tolerated(0.34)	neutral(0.124)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP6	9098	genome.wustl.edu	37	17	5073925	5073925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004505.2	+1	validated	p.K1223N	1.000	93	0%	86	25.6%	0	-	benign(0.042)	tolerated(0.07)	neutral(0.322)	HMMPfam_UCH,superfamily_Cysteine proteinases
ZNF594	84622	genome.wustl.edu	37	17	5084634	5084634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000381752	-1	known	p.V185I	0.687	587	0%	485	29.9%	0	-	benign(0.019)	deleterious(0.02)	neutral(0.384)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667
ZNF594	84622	genome.wustl.edu	37	17	5084876	5084876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000381752	-1	known	p.R104I	0.859	251	0%	255	30.2%	1	100%	possibly_damaging(0.806)	deleterious(0.04)	deleterious(0.652)	HMMPfam_zf-C2H2,superfamily_SSF57667
ZNF594	84622	genome.wustl.edu	37	17	5085028	5085028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000381752	-1	known	p.E53D	0.999	284	0%	300	28.7%	0	-	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	superfamily_SSF57667
ZNF594	84622	genome.wustl.edu	37	17	5085050	5085050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000381752	-1	known	p.H46R	0.076	309	0.3%	324	34.3%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667
ZNF594	84622	genome.wustl.edu	37	17	5085137	5085137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032530.1	-1	validated	p.E805D	0.063	513	0%	502	31.3%	0	-	benign(0.003)	tolerated(0.17)	neutral(0.059)	NULL
ZNF594	84622	genome.wustl.edu	37	17	5086233	5086233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032530.1	-1	validated	p.S440Y	0.003	419	0.2%	386	29%	0	-	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RPAIN	84268	genome.wustl.edu	37	17	5324635	5324635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033002.3	+1	validated	p.R34I	1.000	80	0%	68	33.8%	22	45.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NLRP1	22861	genome.wustl.edu	37	17	5424251	5424251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033004.3	-1	reviewed	p.R1289C	0.002	24	0%	21	23.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP1	22861	genome.wustl.edu	37	17	5433934	5433934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033004.3	-1	reviewed	p.F1129L	0.810	184	0%	156	14.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP1	22861	genome.wustl.edu	37	17	5442821	5442821	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033004.3	-1	reviewed	p.D928	1.000	71	0%	67	25.4%	2	0%	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
FAM64A	54478	genome.wustl.edu	37	17	6352664	6352664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019013.1	+1	provisional	p.A208V	0.000	100	0%	79	27.8%	28	32.1%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_DUF1466
KIAA0753	9851	genome.wustl.edu	37	17	6528142	6528142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014804.2	-1	validated	p.R253Q	0.045	12	0%	16	56.2%	1	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
SLC13A5	284111	genome.wustl.edu	37	17	6594190	6594190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177550.3	-1	validated	p.T449A	0.997	83	0%	97	45.4%	3	0%	benign(0.004)	tolerated(0.52)	neutral(0.009)	HMMPfam_Na_sulph_symp
SLC13A5	284111	genome.wustl.edu	37	17	6599001	6599001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000381074	-1	known	p.R308H	0.002	57	0%	53	35.8%	0	-	-	-	-	NULL
SLC13A5	284111	genome.wustl.edu	37	17	6616611	6616611	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177550.3	-1	validated	p.F14	0.997	41	0%	45	31.1%	3	0%	-	-	-	HMMPfam_Na_sulph_symp
XAF1	54739	genome.wustl.edu	37	17	6674258	6674258	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017523.2	+1	validated	p.S268	0.064	150	0%	121	28.9%	7	0%	-	-	-	NULL
TEKT1	83659	genome.wustl.edu	37	17	6703503	6703503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053285.1	-1	reviewed	p.R367H	0.926	191	0%	131	26.7%	1	0%	probably_damaging(0.953)	tolerated(0.09)	deleterious(0.693)	HMMPfam_Tektin
TEKT1	83659	genome.wustl.edu	37	17	6718550	6718550	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053285.1	-1	reviewed	p.I187	1.000	202	0%	204	29.4%	0	-	-	-	-	HMMPfam_Tektin
DLG4	1742	genome.wustl.edu	37	17	7100221	7100221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001365.3	-1	reviewed	p.R356Q	0.994	51	0%	53	37.7%	10	30%	benign(0.276)	tolerated(0.1)	neutral(0.316)	HMMPfam_PDZ,superfamily_PDZ
DVL2	1856	genome.wustl.edu	37	17	7134104	7134104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004422.2	-1	reviewed	p.E69D	0.998	126	0%	117	28.2%	20	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DIX,HMMSmart_SM00021
SLC35G6	643664	genome.wustl.edu	37	17	7385900	7385900	+	Silent	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102614.1	+1	provisional	p.G199	0.874	122	0%	152	29.6%	0	-	-	-	-	NULL
EIF4A1	1973	genome.wustl.edu	37	17	7478537	7478537	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001416.2	+1	validated	p.Q102	1.000	280	0%	239	27.2%	1046	41.1%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
EIF4A1	1973	genome.wustl.edu	37	17	7481736	7481736	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001416.2	+1	validated	p.R385*	1.000	213	0%	175	30.3%	1257	38.5%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
WRAP53	55135	genome.wustl.edu	37	17	7605346	7605346	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000451908	+1	known	p.C183	0.001	5	0.000	7	0.571	0	-	-	-	-	NULL
DNAH2	146754	genome.wustl.edu	37	17	7643145	7643145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.R422Q	0.982	112	0.9%	98	25.5%	0	-	possibly_damaging(0.525)	tolerated(0.14)	neutral(0.426)	HMMPfam_DHC_N1
DNAH2	146754	genome.wustl.edu	37	17	7646257	7646257	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.G567	0.000	63	0%	77	28.6%	1	100%	-	-	-	HMMPfam_DHC_N1
DNAH2	146754	genome.wustl.edu	37	17	7673883	7673883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.Q1369H	0.994	155	0%	171	37.4%	0	-	benign(0.096)	tolerated(0.09)	neutral(0.303)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7678126	7678126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.Q1517H	1.000	102	0%	80	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7680814	7680814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.K1703N	1.000	818	0%	792	27.5%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7681690	7681690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.D1815G	1.000	89	0%	77	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH2	146754	genome.wustl.edu	37	17	7696048	7696048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.A2407T	0.128	110	0%	118	29.7%	0	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH2	146754	genome.wustl.edu	37	17	7702439	7702439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.D2860Y	1.000	53	0%	48	20.8%	0	-	benign(0.166)	deleterious(0.03)	neutral(0.380)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH2	146754	genome.wustl.edu	37	17	7719960	7719960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.K3267N	1.000	328	0%	290	29.7%	0	-	benign(0.045)	tolerated(0.48)	neutral(0.013)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7733685	7733685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020877.2	+1	validated	p.K3974T	0.997	85	0%	84	32.1%	1	0%	benign(0.002)	tolerated(0.56)	neutral(0.006)	HMMPfam_Dynein_heavy
CHD3	1107	genome.wustl.edu	37	17	7808417	7808417	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005271.2	+1	reviewed	e26-1	1.000	330	0%	287	31%	0	-	-	-	-	-
KCNAB3	9196	genome.wustl.edu	37	17	7829266	7829266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004732.2	-1	reviewed	p.K159N	1.000	185	0%	209	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
CNTROB	116840	genome.wustl.edu	37	17	7849188	7849188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380262	+1	known	p.A626V	0.000	268	0%	269	35.7%	18	44.4%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ALOX15B	247	genome.wustl.edu	37	17	7950251	7950251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001141.2	+1	reviewed	p.F438L	0.257	161	0%	120	31.7%	2	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Lipoxygenase,superfamily_Lipoxigenase
PER1	5187	genome.wustl.edu	37	17	8052944	8052944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002616.2	-1	reviewed	p.R230Q	0.992	123	0%	91	35.2%	0	-	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)
KRBA2	124751	genome.wustl.edu	37	17	8272735	8272735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213597.2	-1	provisional	p.F399S	0.054	250	0%	157	25.5%	3	33.3%	possibly_damaging(0.556)	tolerated(0.19)	neutral(0.239)	superfamily_RNaseH_fold
MYH10	4628	genome.wustl.edu	37	17	8402793	8402793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005964.1	-1	validated	p.F1218S	1.000	142	0%	105	23.8%	17	17.6%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Myosin_tail_1
PIK3R5	23533	genome.wustl.edu	37	17	8791958	8791958	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142633.1	-1	validated	p.G382	1.000	13	0%	20	35%	1	0%	-	-	-	HMMPfam_PI3K_1B_p101
STX8	9482	genome.wustl.edu	37	17	9460797	9460797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004853.2	-1	reviewed	p.A56T	1.000	84	0%	51	39.2%	45	40%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
WDR16	146845	genome.wustl.edu	37	17	9490152	9490152	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145054.4	+1	validated	e3+1	1.000	185	0%	170	33.5%	0	-	-	-	-	-
WDR16	146845	genome.wustl.edu	37	17	9545080	9545080	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145054.4	+1	validated	p.E539*	1.000	83	0%	87	39.1%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR16	146845	genome.wustl.edu	37	17	9546490	9546490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145054.4	+1	validated	p.R613Q	0.890	110	0%	96	26%	0	-	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RCVRN	5957	genome.wustl.edu	37	17	9808141	9808141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002903.2	-1	reviewed	p.K119N	0.512	88	0%	96	43.8%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
MYH13	8735	genome.wustl.edu	37	17	10214497	10214497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003802.2	-1	validated	p.L1527F	1.000	111	0%	99	30.3%	0	-	benign(0.072)	deleterious(0)	neutral(0.450)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH13	8735	genome.wustl.edu	37	17	10224880	10224880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003802.2	-1	validated	p.I1027T	1.000	362	0%	275	31.3%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_Prefoldin
MYH13	8735	genome.wustl.edu	37	17	10267773	10267773	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003802.2	-1	validated	p.I25	0.893	89	0%	87	29.9%	0	-	-	-	-	NULL
MYH8	4626	genome.wustl.edu	37	17	10303779	10303779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002472.2	-1	reviewed	p.E1221D	1.000	237	0%	187	32.1%	0	-	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	HMMPfam_Myosin_tail_1
MYH8	4626	genome.wustl.edu	37	17	10304727	10304727	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002472.2	-1	reviewed	p.T991	0.983	236	0%	231	31.6%	0	-	-	-	-	NULL
MYH8	4626	genome.wustl.edu	37	17	10315785	10315785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002472.2	-1	reviewed	p.L440M	1.000	587	0%	486	31.5%	0	-	possibly_damaging(0.874)	tolerated(0.11)	deleterious(0.611)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10350473	10350473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017533.2	-1	validated	p.A1676T	1.000	143	0%	123	26.8%	0	-	benign(0.002)	tolerated(0.19)	neutral(0.050)	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10368886	10368886	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017533.2	-1	validated	p.V126	1.000	198	0%	180	38.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10408518	10408518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005963.3	-1	reviewed	p.F799L	1.000	226	0%	202	30.2%	0	-	benign(0.003)	tolerated(0.13)	neutral(0.253)	HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10411907	10411907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005963.3	-1	reviewed	p.E557A	1.000	99	0%	79	22.8%	0	-	benign(0.048)	tolerated(0.06)	neutral(0.326)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10411990	10411990	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005963.3	-1	reviewed	e14-1	1.000	92	0%	66	33.3%	0	-	-	-	-	-
MYH1	4619	genome.wustl.edu	37	17	10419767	10419767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005963.3	-1	reviewed	p.E65K	0.989	361	0%	290	31.7%	0	-	benign(0.176)	tolerated(0.84)	neutral(0.017)	HMMPfam_Myosin_N,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10428356	10428356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100112.1	-1	reviewed	p.K1563N	1.000	219	0%	148	27%	0	-	benign(0.085)	deleterious(0)	neutral(0.451)	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10430107	10430107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100112.1	-1	reviewed	p.K1332N	1.000	166	0%	157	35.7%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10432765	10432765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100112.1	-1	reviewed	p.R1051C	1.000	166	0%	129	33.3%	0	-	benign(0.02)	deleterious(0)	neutral(0.446)	NULL
MYH2	4620	genome.wustl.edu	37	17	10433162	10433162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100112.1	-1	reviewed	p.A976V	1.000	446	0%	325	25.2%	0	-	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
MYH3	4621	genome.wustl.edu	37	17	10535182	10535182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002470.2	-1	reviewed	p.A1703V	1.000	164	0%	133	29.3%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Myosin_tail_1
MYH3	4621	genome.wustl.edu	37	17	10541715	10541715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002470.2	-1	reviewed	p.A1125V	1.000	74	1.4%	49	26.5%	0	-	possibly_damaging(0.764)	deleterious(0)	deleterious(0.728)	HMMPfam_Myosin_tail_1
MYH3	4621	genome.wustl.edu	37	17	10542276	10542276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002470.2	-1	reviewed	p.D1085Y	1.000	130	0%	96	10.4%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_Myosin_tail_1
MYH3	4621	genome.wustl.edu	37	17	10543378	10543378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002470.2	-1	reviewed	p.E873K	1.000	179	0%	130	30%	0	-	possibly_damaging(0.568)	deleterious(0.04)	deleterious(0.543)	NULL
MYH3	4621	genome.wustl.edu	37	17	10547728	10547728	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002470.2	-1	reviewed	p.T450	0.011	210	0%	225	32%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH3	4621	genome.wustl.edu	37	17	10550730	10550730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002470.2	-1	reviewed	p.R250Q	1.000	154	0%	164	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
DNAH9	1770	genome.wustl.edu	37	17	11523036	11523036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001372.3	+1	reviewed	p.F430I	1.000	226	0%	230	28.3%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	HMMPfam_DHC_N1
DNAH9	1770	genome.wustl.edu	37	17	11593208	11593208	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001372.3	+1	reviewed	p.T1357P	0.127	67	0%	77	29.9%	0	-	benign(0.029)	tolerated(0.27)	neutral(0.035)	HMMPfam_DHC_N2
DNAH9	1770	genome.wustl.edu	37	17	11597208	11597208	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001372.3	+1	reviewed	p.I1546	0.996	265	0%	226	26.5%	1	100%	-	-	-	HMMPfam_DHC_N2
DNAH9	1770	genome.wustl.edu	37	17	11597682	11597682	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001372.3	+1	reviewed	p.K1597T	1.000	156	0%	166	34.3%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_DHC_N2
DNAH9	1770	genome.wustl.edu	37	17	11835517	11835517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001372.3	+1	reviewed	p.A4098T	0.000	97	0%	158	26.6%	0	-	benign(0.025)	tolerated(0.09)	neutral(0.297)	HMMPfam_Dynein_heavy,PatternScan_CPSASE_2
DNAH9	1770	genome.wustl.edu	37	17	11865483	11865483	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001372.3	+1	reviewed	p.T4381	0.019	182	0%	128	22.7%	0	-	-	-	-	HMMPfam_Dynein_heavy
ENSG00000205325	0	genome.wustl.edu	37	17	14683245	14683245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000379640	-1	known	p.R81Q	0.000	144	0.7%	118	38.1%	0	-	unknown(0)	-	-	NULL
CDRT1	374286	genome.wustl.edu	37	17	15501935	15501935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006382.3	-1	provisional	p.R489Q	0.933	169	0%	128	15.6%	0	-	unknown(0)	deleterious(0.05)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CDRT1	374286	genome.wustl.edu	37	17	15522425	15522425	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006382.3	-1	provisional	p.A134	0.151	242	0%	244	23.8%	0	-	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	15943783	15943783	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006311.2	-1	reviewed	p.I2235	1.000	47	0%	42	23.8%	25	56%	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	15965425	15965425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006311.2	-1	reviewed	p.R1794Q	0.995	306	0%	400	31.5%	12	41.6%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
LOC100133337	100133337	genome.wustl.edu	37	17	16285581	16285581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001722331.2	-1	model	p.D124N	1.000	137	0%	174	31.6%	405	0%	-	-	-	NULL
UBB	7314	genome.wustl.edu	37	17	16285838	16285838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018955.2	+1	reviewed	p.R206H	1.000	91	3.3%	118	26.3%	206	0%	possibly_damaging(0.583)	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
ZNF287	57336	genome.wustl.edu	37	17	16467135	16467135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020653.2	-1	validated	p.S169L	1.000	86	0%	112	16.1%	1	0%	benign(0.001)	tolerated(0.38)	neutral(0.018)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF624	57547	genome.wustl.edu	37	17	16525619	16525619	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020787.2	-1	validated	p.E861*	1.000	278	0%	204	25.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF624	57547	genome.wustl.edu	37	17	16526186	16526186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020787.2	-1	validated	p.E672K	0.959	247	0.4%	198	32.8%	2	0%	benign(0.234)	tolerated(0.12)	neutral(0.284)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCDC144A	9720	genome.wustl.edu	37	17	16593801	16593801	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014695.1	+1	provisional	p.V29	0.020	54	0%	51	41.2%	0	-	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16608588	16608588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014695.1	+1	provisional	p.E180A	0.727	476	0.2%	423	21.5%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16664772	16664772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014695.1	+1	provisional	p.S1136P	0.957	78	0%	89	11.2%	0	-	possibly_damaging(0.604)	tolerated(0.1)	deleterious(0.496)	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16665751	16665751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014695.1	+1	provisional	p.S1264L	0.096	59	0%	51	56.9%	0	-	benign(0.202)	tolerated(0.19)	neutral(0.069)	NULL
MPRIP	23164	genome.wustl.edu	37	17	17062156	17062156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015134.2	+1	validated	p.T629M	0.028	22	0%	15	40%	35	28.5%	possibly_damaging(0.888)	tolerated(0.05)	deleterious(0.693)	NULL
NT5M	56953	genome.wustl.edu	37	17	17209886	17209886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020201.3	+1	reviewed	p.K99N	1.000	156	0%	178	24.2%	0	-	possibly_damaging(0.437)	tolerated(0.08)	neutral(0.443)	HMMPfam_NT5C,superfamily_SSF56784
TOM1L2	146691	genome.wustl.edu	37	17	17764809	17764809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001082968.1	-1	validated	p.R420Q	1.000	47	0%	40	45%	7	14.2%	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	NULL
MYO15A	51168	genome.wustl.edu	37	17	18059602	18059602	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016239.3	+1	reviewed	p.A2851	0.001	70	0%	47	48.9%	0	-	-	-	-	NULL
LOC645139	645139	genome.wustl.edu	37	17	18553877	18553877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_928169.3	+1	model	p.D163E	0.996	119	0%	146	29.5%	0	-	-	-	-	superfamily_ARM repeat
ZNF286B	729288	genome.wustl.edu	37	17	18565413	18565413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145045.1	-1	validated	p.C469F	0.960	97	0%	103	33%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF286B	729288	genome.wustl.edu	37	17	18566276	18566276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145045.1	-1	validated	p.M181I	0.985	120	0%	126	25.4%	0	-	-	-	-	NULL
ENSG00000248683	0	genome.wustl.edu	37	17	18574704	18574704	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000507743	+1	novel	NULL	0.999	128	0%	116	25.9%	9	0%	-	-	-	-
ENSG00000248683	0	genome.wustl.edu	37	17	18575548	18575548	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000507743	+1	novel	NULL	1.000	33	0%	45	26.7%	4	0%	-	-	-	-
SNORA59B	677882	genome.wustl.edu	37	17	19461007	19461007	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_003022.1	+1	provisional	NULL	0.000	244	0%	226	10.2%	0	-	-	-	-	-
SLC47A2	146802	genome.wustl.edu	37	17	19584902	19584902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152908.3	-1	validated	p.G452C	0.919	79	0%	89	27%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MatE
ULK2	9706	genome.wustl.edu	37	17	19728424	19728424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142610.1	-1	reviewed	p.R303C	1.000	91	1.1%	100	29%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Protein kinase-like (PK-like)
ULK2	9706	genome.wustl.edu	37	17	19769100	19769100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142610.1	-1	reviewed	p.K44N	1.000	40	0%	36	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AKAP10	11216	genome.wustl.edu	37	17	19823392	19823392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007202.2	-1	reviewed	p.F597L	1.000	106	0%	85	17.6%	4	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
AKAP10	11216	genome.wustl.edu	37	17	19871735	19871735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007202.2	-1	reviewed	p.S43F	1.000	195	0%	143	25.9%	4	100%	benign(0.167)	tolerated(0.08)	neutral(0.315)	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20224876	20224876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000425519	+1	known	p.E83K	0.000	141	0%	98	26.5%	0	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20239197	20239197	+	Missense_Mutation	SNP	G	G	T	rs55898632		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000425519	+1	known	p.K156N	0.004	365	0%	338	25.1%	0	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20268521	20268521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000425519	+1	known	p.K660N	0.978	123	0%	99	29.3%	0	-	benign(0.307)	tolerated(0.3)	neutral(0.124)	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20295061	20295061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000425519	+1	known	p.E1026K	0.267	264	0%	278	22.3%	0	-	possibly_damaging(0.948)	tolerated(0.07)	deleterious(0.710)	NULL
USP22	23326	genome.wustl.edu	37	17	20924446	20924446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015276.1	-1	validated	p.R133Q	1.000	68	0%	41	24.4%	27	44.4%	benign(0.137)	tolerated(0.41)	neutral(0.026)	NULL
MAP2K3	5606	genome.wustl.edu	37	17	21206544	21206544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145109.2	+1	reviewed	p.R189I	1.000	28	0%	22	22.7%	80	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC440419	440419	genome.wustl.edu	37	17	25755726	25755726	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_040504.2	+1	model	NULL	1.000	120	0%	73	12.3%	0	-	-	-	-	-
LOC440419	440419	genome.wustl.edu	37	17	25758261	25758261	+	RNA	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_040504.2	+1	model	NULL	0.023	23	0%	34	44.1%	0	-	-	-	-	-
KSR1	8844	genome.wustl.edu	37	17	25932694	25932694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014238.1	+1	validated	p.R502C	1.000	17	0%	15	40%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
KSR1	8844	genome.wustl.edu	37	17	25936278	25936278	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398988	+1	known	p.R452C	0.978	75	0%	77	33.8%	2	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like)
NOS2	4843	genome.wustl.edu	37	17	26099450	26099450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000625.4	-1	reviewed	p.R530C	0.961	23	0%	26	19.2%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
NOS2	4843	genome.wustl.edu	37	17	26109129	26109129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000625.4	-1	reviewed	p.F212V	1.000	72	0%	47	31.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
NOS2	4843	genome.wustl.edu	37	17	26114738	26114738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000625.4	-1	reviewed	p.E145K	0.990	157	0%	148	30.4%	0	-	benign(0.062)	deleterious(0.05)	neutral(0.349)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
TMEM199	147007	genome.wustl.edu	37	17	26688179	26688179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152464.1	+1	provisional	p.R178W	0.990	40	0%	31	32.3%	24	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC46A1	113235	genome.wustl.edu	37	17	26727661	26727661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080669.3	-1	reviewed	p.S430G	1.000	12	0%	24	33.3%	8	87.5%	-	-	-	NULL
SLC13A2	9058	genome.wustl.edu	37	17	26800822	26800822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003984.3	+1	validated	p.V31A	0.672	58	0%	62	30.6%	0	-	benign(0.013)	tolerated(0.81)	neutral(0.001)	HMMPfam_Na_sulph_symp
SLC13A2	9058	genome.wustl.edu	37	17	26820718	26820718	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003984.3	+1	validated	p.F336	0.256	114	0%	86	31.4%	0	-	-	-	-	HMMPfam_Na_sulph_symp
ALDOC	230	genome.wustl.edu	37	17	26901108	26901108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005165.2	-1	reviewed	p.R259H	1.000	138	0%	107	39.3%	7	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Glycolytic,superfamily_Aldolase
SPAG5	10615	genome.wustl.edu	37	17	26905499	26905499	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006461.3	-1	reviewed	p.A1082	0.894	178	0%	232	29.3%	16	43.7%	-	-	-	NULL
NEK8	284086	genome.wustl.edu	37	17	27067575	27067575	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178170.2	+1	reviewed	p.I504	0.434	85	0%	56	16.1%	1	0%	-	-	-	superfamily_RCC1/BLIP-II
PHF12	57649	genome.wustl.edu	37	17	27238154	27238154	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033561.1	-1	validated	p.R731*	1.000	57	0%	54	25.9%	18	33.3%	-	-	-	NULL
PHF12	57649	genome.wustl.edu	37	17	27244400	27244400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033561.1	-1	validated	p.S346L	1.000	134	0%	134	26.1%	6	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SSH2	85464	genome.wustl.edu	37	17	28011621	28011621	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033389.2	-1	reviewed	p.E120*	1.000	208	0%	230	33.9%	1	0%	-	-	-	NULL
NSRP1	84081	genome.wustl.edu	37	17	28511782	28511782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032141.2	+1	validated	p.A256V	0.997	164	0%	187	33.2%	15	26.6%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
BLMH	642	genome.wustl.edu	37	17	28601146	28601146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000386.2	-1	reviewed	p.D239Y	1.000	184	0%	164	32.9%	15	20%	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	HMMPfam_Peptidase_C1_2,superfamily_Cysteine proteinases
ATAD5	79915	genome.wustl.edu	37	17	29220814	29220814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024857.3	+1	provisional	p.S1648Y	1.000	203	0%	190	28.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATAD5	79915	genome.wustl.edu	37	17	29221689	29221689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024857.3	+1	provisional	p.R1802Q	1.000	95	0%	105	38.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TEFM	79736	genome.wustl.edu	37	17	29226437	29226437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024683.3	-1	validated	p.R278Q	0.294	201	0%	143	55.2%	11	72.7%	probably_damaging(0.962)	tolerated(0.19)	neutral(0.455)	superfamily_Ribonuclease H-like
RNF135	84282	genome.wustl.edu	37	17	29325917	29325917	+	Missense_Mutation	SNP	G	G	A	rs140592050	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032322.3	+1	reviewed	p.R336H	0.003	83	0%	119	37.8%	20	45%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SPRY
NF1	4763	genome.wustl.edu	37	17	29541595	29541595	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042492.2	+1	reviewed	p.L507V	0.998	129	0%	79	30.4%	0	-	benign(0.005)	tolerated(0.11)	neutral(0.272)	NULL
OMG	4974	genome.wustl.edu	37	17	29622906	29622906	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002544.4	-1	validated	p.L148	0.545	503	0%	485	30.9%	0	-	-	-	-	HMMSmart_LRR_TYP,superfamily_SSF52058
NF1	4763	genome.wustl.edu	37	17	29664427	29664427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042492.2	+1	reviewed	p.S2157P	1.000	91	0%	84	29.8%	13	38.4%	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	NULL
NF1	4763	genome.wustl.edu	37	17	29687547	29687547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042492.2	+1	reviewed	p.L2735I	1.000	282	0%	253	32.4%	21	23.8%	probably_damaging(0.964)	deleterious(0.04)	deleterious(0.755)	NULL
LRRC37B	114659	genome.wustl.edu	37	17	30348719	30348721	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052888.2	+1	validated	p.V187in_frame_del	0.024:0.035:0.047	-	-	-	-	-	-	-	-	-	NULL
LRRC37B	114659	genome.wustl.edu	37	17	30354829	30354829	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052888.2	+1	validated	p.S598*	0.999	283	0%	282	19.9%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
RHOT1	55288	genome.wustl.edu	37	17	30530924	30530924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033568.1	+1	validated	p.R450C	1.000	91	0%	68	27.9%	24	45.8%	possibly_damaging(0.836)	tolerated(0.06)	deleterious(0.642)	HMMPfam_Miro,superfamily_SSF52540
RHBDL3	162494	genome.wustl.edu	37	17	30611700	30611700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138328.2	+1	validated	p.Y53C	0.997	22	0%	29	24.1%	0	-	probably_damaging(0.968)	tolerated(0.17)	deleterious(0.469)	superfamily_SSF47473
PSMD11	5717	genome.wustl.edu	37	17	30804556	30804556	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000457654	+1	known	p.R27C	1.000	170	0%	128	25.8%	106	52.8%	-	-	-	HMMPfam_PCI
MYO1D	4642	genome.wustl.edu	37	17	31048192	31048192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015194.1	-1	provisional	p.R588C	1.000	161	0%	168	32.1%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1D	4642	genome.wustl.edu	37	17	31075976	31075976	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015194.1	-1	provisional	p.R506*	0.992	303	0%	271	29.9%	8	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1D	4642	genome.wustl.edu	37	17	31087319	31087319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015194.1	-1	provisional	p.P429S	1.000	1096	0%	1057	28.9%	9	11.1%	benign(0.183)	tolerated(0.31)	neutral(0.044)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1D	4642	genome.wustl.edu	37	17	31087349	31087349	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015194.1	-1	provisional	p.E419*	1.000	1082	0%	1051	33.9%	12	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1D	4642	genome.wustl.edu	37	17	31087410	31087410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015194.1	-1	provisional	p.F398L	1.000	833	0.1%	841	16.4%	13	15.3%	possibly_damaging(0.639)	tolerated(0.3)	neutral(0.252)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM98	26022	genome.wustl.edu	37	17	31267874	31267874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033504.1	+1	validated	p.G182S	1.000	151	0%	135	21.5%	34	0%	benign(0)	tolerated(1)	-	NULL
ENSG00000226049	0	genome.wustl.edu	37	17	32366316	32366316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430493	-1	known	p.E135D	0.994	216	0%	152	25.7%	4	0%	-	-	-	NULL
ENSG00000226049	0	genome.wustl.edu	37	17	32366698	32366698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430493	-1	known	p.R64I	1.000	134	0%	89	28.1%	0	-	-	-	-	NULL
CCL11	6356	genome.wustl.edu	37	17	32612836	32612836	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002986.2	+1	reviewed	p.V3	0.000	464	0%	355	27.6%	40	0%	-	-	-	NULL
CCL13	6357	genome.wustl.edu	37	17	32684605	32684605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005408.2	+1	reviewed	p.V63A	0.897	252	0%	191	28.8%	8	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
LIG3	3980	genome.wustl.edu	37	17	33318844	33318844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013975.2	+1	reviewed	p.D399G	1.000	108	0%	133	26.3%	5	20%	benign(0.007)	tolerated(0.31)	neutral(0.027)	HMMPfam_DNA_ligase_A_N
SLC35G3	146861	genome.wustl.edu	37	17	33520926	33520926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152462.2	-1	validated	p.R134H	1.000	256	0%	204	30.4%	0	-	possibly_damaging(0.7)	tolerated(0.18)	neutral(0.307)	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE
SLFN11	91607	genome.wustl.edu	37	17	33680395	33680395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001104587.1	-1	validated	p.L628I	0.576	315	0%	258	23.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
AP2B1	163	genome.wustl.edu	37	17	33925338	33925338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001030006.1	+1	reviewed	p.V43M	1.000	106	0%	75	22.7%	37	37.8%	possibly_damaging(0.729)	tolerated(0.14)	deleterious(0.515)	HMMPfam_Adaptin_N,superfamily_ARM repeat
TAF15	8148	genome.wustl.edu	37	17	34147191	34147191	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139215.1	+1	reviewed	p.T41	0.335	170	0%	194	25.3%	51	15.6%	-	-	-	NULL
C17orf66	256957	genome.wustl.edu	37	17	34182345	34182345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152781.2	-1	validated	p.L479F	0.030	526	0%	515	33.2%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
CCL14	6358	genome.wustl.edu	37	17	34313661	34313661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032962.4	-1	reviewed	p.P9S	0.009	91	0%	95	32.6%	0	-	benign(0.001)	tolerated(1)	-	NULL
GGNBP2	79893	genome.wustl.edu	37	17	34935745	34935745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024835.2	+1	validated	p.L306I	1.000	196	0%	221	30.3%	27	44.4%	possibly_damaging(0.772)	tolerated(0.24)	neutral(0.324)	NULL
GGNBP2	79893	genome.wustl.edu	37	17	34945767	34945767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024835.2	+1	validated	p.N674D	1.000	229	0%	200	27.5%	51	41.1%	benign(0.252)	tolerated(0.17)	neutral(0.085)	NULL
ACACA	31	genome.wustl.edu	37	17	35454050	35454050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198834.1	-1	reviewed	p.R2258C	1.000	72	0%	78	32.1%	12	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
ACACA	31	genome.wustl.edu	37	17	35506830	35506830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198834.1	-1	reviewed	p.E1879D	1.000	284	0%	277	31%	12	91.6%	benign(0.008)	tolerated(0.14)	neutral(0.249)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
ACACA	31	genome.wustl.edu	37	17	35578754	35578754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198834.1	-1	reviewed	p.R1192*	1.000	139	0%	108	31.5%	3	0%	-	-	-	HMMPfam_ACC_central
ACACA	31	genome.wustl.edu	37	17	35591977	35591977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198834.1	-1	reviewed	p.E1053D	1.000	133	0%	140	30.7%	3	0%	benign(0.025)	tolerated(0.1)	neutral(0.287)	HMMPfam_ACC_central
TADA2A	6871	genome.wustl.edu	37	17	35831231	35831231	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001488.3	+1	reviewed	p.A354	1.000	62	0%	47	23.4%	9	44.4%	-	-	-	NULL
SYNRG	11276	genome.wustl.edu	37	17	35879084	35879084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007247.4	-1	reviewed	p.E1302K	1.000	261	0%	213	33.8%	10	30%	possibly_damaging(0.947)	tolerated(0.1)	deleterious(0.677)	NULL
GPR179	440435	genome.wustl.edu	37	17	36483472	36483472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004334.2	-1	validated	p.A1994T	0.000	161	0%	177	31.1%	0	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	NULL
SRCIN1	80725	genome.wustl.edu	37	17	36708268	36708268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025248.2	-1	validated	p.E861K	0.998	50	0%	41	34.1%	1	100%	benign(0.047)	tolerated(0.21)	neutral(0.047)	NULL
LASP1	3927	genome.wustl.edu	37	17	37074894	37074894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006148.2	+1	validated	p.D217N	1.000	60	0%	75	33.3%	81	24.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CACNB1	782	genome.wustl.edu	37	17	37340098	37340098	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000723.3	-1	reviewed	p.I306	0.375	28	0%	40	30%	0	-	-	-	-	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNB1	782	genome.wustl.edu	37	17	37341040	37341040	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000723.3	-1	reviewed	p.Y242	0.998	65	0%	61	36.1%	0	-	-	-	-	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDK12	51755	genome.wustl.edu	37	17	37618947	37618947	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016507.2	+1	validated	p.K208T	1.000	209	0%	238	22.7%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ERBB2	2064	genome.wustl.edu	37	17	37884261	37884261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004448.2	+1	reviewed	p.E1244D	1.000	77	0%	65	32.3%	139	44.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GSDMB	55876	genome.wustl.edu	37	17	38061210	38061210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042471.1	-1	reviewed	p.S356Y	0.000	254	0%	284	28.2%	4	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Gasdermin
GSDMA	284110	genome.wustl.edu	37	17	38127835	38127835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178171.4	+1	validated	p.R206Q	1.000	212	0.5%	212	35.4%	1	0%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_Gasdermin
PSMD3	5709	genome.wustl.edu	37	17	38146393	38146393	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002809.2	+1	reviewed	p.T308	0.710	109	0%	118	29.7%	259	41.6%	-	-	-	HMMSmart_SM00753,superfamily_TPR-like
MED24	9862	genome.wustl.edu	37	17	38183243	38183243	+	Silent	SNP	G	G	A	rs142434171	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014815.3	-1	reviewed	p.F525	1.000	65	0%	52	30.8%	46	34.7%	-	-	-	NULL
TOP2A	7153	genome.wustl.edu	37	17	38556217	38556217	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001067.2	-1	reviewed	p.E1035*	1.000	83	0%	67	35.8%	13	0%	-	-	-	HMMPfam_DNA_topoisoIV,HMMSmart_SM00434,superfamily_Type II DNA topoisomerase
IGFBP4	3487	genome.wustl.edu	37	17	38609323	38609323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001552.2	+1	reviewed	p.I146L	0.445	100	0%	103	28.2%	154	0%	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_Thyroglobulin_1
KRT25	147183	genome.wustl.edu	37	17	38906816	38906816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181534.3	-1	reviewed	p.E331K	0.518	344	0%	304	26%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Filament
KRT25	147183	genome.wustl.edu	37	17	38910212	38910212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181534.3	-1	reviewed	p.R190Q	0.998	277	0%	238	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT26	353288	genome.wustl.edu	37	17	38927483	38927483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181539.4	-1	reviewed	p.I149M	0.147	61	0%	50	36%	0	-	benign(0.088)	tolerated(0.09)	neutral(0.303)	HMMPfam_Filament
KRT28	162605	genome.wustl.edu	37	17	38948759	38948759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181535.3	-1	reviewed	p.L439I	0.968	73	0%	81	33.3%	0	-	possibly_damaging(0.573)	tolerated(0.33)	neutral(0.221)	NULL
KRT12	3859	genome.wustl.edu	37	17	39021103	39021103	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000223.3	-1	reviewed	p.E254	0.040	161	0%	135	29.6%	0	-	-	-	-	HMMPfam_Filament
KRT23	25984	genome.wustl.edu	37	17	39084546	39084546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015515.3	-1	reviewed	p.E289K	1.000	180	0%	148	25%	41	56%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Filament
KRTAP4-4	84616	genome.wustl.edu	37	17	39316881	39316881	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032524.1	-1	reviewed	p.C21	0.669	169	0%	156	34%	0	-	-	-	-	HMMPfam_Keratin_B2
KRTAP9-4	85280	genome.wustl.edu	37	17	39406434	39406434	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033191.2	+1	reviewed	p.C154	0.066	428	0.2%	413	35.4%	0	-	-	-	-	NULL
KRT33A	3883	genome.wustl.edu	37	17	39503152	39503152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004138.2	-1	reviewed	p.E274K	0.986	158	0%	136	30.9%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_Filament
KRT33B	3884	genome.wustl.edu	37	17	39521726	39521726	+	Missense_Mutation	SNP	T	T	G	rs61741663	byCluster;byFrequency;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002279.3	-1	reviewed	p.Q223P	0.094	122	0%	104	35.6%	0	-	benign(0.023)	deleterious(0)	neutral(0.446)	HMMPfam_Filament
KRT33B	3884	genome.wustl.edu	37	17	39525807	39525807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002279.3	-1	reviewed	p.R66C	1.000	193	0%	149	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT34	3885	genome.wustl.edu	37	17	39535249	39535249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021013.3	-1	reviewed	p.E394D	1.000	381	0%	436	14.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT37	8688	genome.wustl.edu	37	17	39578410	39578410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003770.4	-1	reviewed	p.E311K	0.132	159	0%	153	32.7%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Filament
KRT38	8687	genome.wustl.edu	37	17	39596907	39596907	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006771.3	-1	reviewed	p.I89	0.000	77	1.3%	74	27%	0	-	-	-	-	NULL
KRT15	3866	genome.wustl.edu	37	17	39672425	39672425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002275.3	-1	reviewed	p.E277D	0.996	167	0%	145	30.3%	6	16.6%	benign(0.067)	tolerated(0.47)	neutral(0.015)	superfamily_Prefoldin,HMMPfam_Filament
KRT15	3866	genome.wustl.edu	37	17	39673065	39673065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002275.3	-1	reviewed	p.E245K	1.000	112	0%	69	18.8%	4	25%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_Prefoldin,HMMPfam_Filament
KRT19	3880	genome.wustl.edu	37	17	39681449	39681449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002276.4	-1	reviewed	p.R166Q	0.988	138	0%	111	12.6%	5371	15.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Filament
KRT9	3857	genome.wustl.edu	37	17	39723975	39723975	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000226.3	-1	reviewed	p.G474	0.002	134	0%	136	26.5%	0	-	-	-	-	NULL
KRT9	3857	genome.wustl.edu	37	17	39726123	39726123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000226.3	-1	reviewed	p.K290N	1.000	279	0%	241	32%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Filament
FKBP10	60681	genome.wustl.edu	37	17	39974766	39974766	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021939.3	+1	reviewed	p.G238	1.000	21	0%	28	25%	54	0%	-	-	-	HMMPfam_FKBP_C,superfamily_SSF54534
TTC25	83538	genome.wustl.edu	37	17	40117143	40117143	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000377543	+1	known	p.A554G	0.000	41	0%	37	27%	0	-	-	-	-	NULL
DHX58	79132	genome.wustl.edu	37	17	40261295	40261295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024119.2	-1	validated	p.R224H	0.932	11	0%	12	58.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
KAT2A	2648	genome.wustl.edu	37	17	40271683	40271683	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021078.2	-1	validated	p.R251	1.000	91	0%	111	34.2%	22	54.5%	-	-	-	HMMPfam_PCAF_N
STAT3	6774	genome.wustl.edu	37	17	40486033	40486033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139276.2	-1	reviewed	p.R278C	0.989	63	0%	58	22.4%	44	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_STAT_alpha,superfamily_STAT
MLX	6945	genome.wustl.edu	37	17	40720843	40720843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000429573	+1	known	p.S15Y	0.070	15	0%	16	50%	1	100%	-	-	-	NULL
CNTNAP1	8506	genome.wustl.edu	37	17	40843867	40843867	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003632.2	+1	reviewed	p.L796	0.004	844	0%	693	28.9%	2	0%	-	-	-	superfamily_ConA_like_lec_gl
BRCA1	672	genome.wustl.edu	37	17	41243774	41243774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007294.3	-1	reviewed	p.E1258D	0.348	383	0%	425	15.5%	4	0%	benign(0.017)	tolerated(0.36)	neutral(0.021)	NULL
BRCA1	672	genome.wustl.edu	37	17	41244562	41244562	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007294.3	-1	reviewed	p.K996Q	0.000	294	0%	351	31.1%	8	62.5%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	NULL
NBR2	10230	genome.wustl.edu	37	17	41291903	41291903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000356906	+1	known	p.D85G	0.082	7	0.000	14	0.357	5	60%	unknown(0)	-	-	NULL
NBR1	4077	genome.wustl.edu	37	17	41338323	41338323	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005899.3	+1	reviewed	p.V88	0.004	27	0%	35	34.3%	22	45.4%	-	-	-	NULL
ETV4	2118	genome.wustl.edu	37	17	41607297	41607297	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079675.1	-1	validated	p.R304*	0.002	329	0%	290	32.1%	13	7.6%	-	-	-	HMMPfam_ETS_PEA3_N
MPP2	4355	genome.wustl.edu	37	17	41958118	41958118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005374.3	-1	reviewed	p.R364H	1.000	110	0%	90	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
LSM12	124801	genome.wustl.edu	37	17	42114872	42114872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152344.3	-1	validated	p.V135I	1.000	144	0%	204	49%	48	72.9%	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_AD
HDAC5	10014	genome.wustl.edu	37	17	42156562	42156562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001015053.1	-1	reviewed	p.A1011T	1.000	37	0%	48	33.3%	44	31.8%	possibly_damaging(0.487)	deleterious(0)	deleterious(0.607)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
UBTF	7343	genome.wustl.edu	37	17	42285234	42285234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014233.2	-1	validated	p.N651D	1.000	284	0%	353	44.8%	63	57.1%	benign(0.045)	tolerated(0.39)	neutral(0.018)	superfamily_HMG-box
ITGA2B	3674	genome.wustl.edu	37	17	42458283	42458283	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000419.3	-1	reviewed	p.R453*	0.237	130	0%	164	28%	0	-	-	-	-	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
C17orf104	284071	genome.wustl.edu	37	17	42744335	42744335	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145080.2	+1	validated	p.K352N	0.842	98	0%	80	31.2%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
C1QL1	10882	genome.wustl.edu	37	17	43037694	43037694	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006688.3	-1	provisional	p.Y213	0.960	34	0%	60	20%	1	0%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
ACBD4	79777	genome.wustl.edu	37	17	43214439	43214439	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135704.1	+1	reviewed	p.F116	0.425	19	0%	25	28%	3	0%	-	-	-	NULL
LOC100288229	100288229	genome.wustl.edu	37	17	43626407	43626407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343565.1	-1	model	p.S432Y	0.000	492	0%	508	26.4%	0	-	-	-	-	NULL
SPPL2C	162540	genome.wustl.edu	37	17	43923141	43923141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175882.2	+1	validated	p.G290D	0.977	133	0%	91	17.6%	0	-	benign(0.132)	tolerated(0.24)	neutral(0.049)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
SPPL2C	162540	genome.wustl.edu	37	17	43923304	43923304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175882.2	+1	validated	p.E344D	1.000	76	0%	71	33.8%	0	-	possibly_damaging(0.76)	tolerated(0.14)	deleterious(0.530)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
SPPL2C	162540	genome.wustl.edu	37	17	43923691	43923691	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175882.2	+1	validated	p.F473	0.000	139	0%	127	41.7%	0	-	-	-	-	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
KANSL1	284058	genome.wustl.edu	37	17	44108854	44108854	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015443.2	-1	validated	p.P1102	0.279	33	0%	36	38.9%	9	11.1%	-	-	-	NULL
KANSL1	284058	genome.wustl.edu	37	17	44143935	44143935	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015443.2	-1	validated	p.R606*	1.000	102	0%	83	34.9%	6	0%	-	-	-	NULL
ITGB3	3690	genome.wustl.edu	37	17	45361973	45361973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000212.2	+1	reviewed	p.R176W	1.000	276	0.4%	297	31%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
ENSG00000228782	0	genome.wustl.edu	37	17	45560440	45560440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000425159	-1	known	p.D126Y	0.996	325	0.3%	323	26.3%	30	0%	-	-	-	HMMPfam_Tim44
TBKBP1	9755	genome.wustl.edu	37	17	45785841	45785841	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014726.2	+1	validated	p.I318	1.000	22	0%	22	27.3%	0	-	-	-	-	NULL
PRR15L	79170	genome.wustl.edu	37	17	46030400	46030400	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024320.2	-1	provisional	p.H67	0.950	179	0%	117	36.8%	10	80%	-	-	-	NULL
HOXB3	3213	genome.wustl.edu	37	17	46629646	46629646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002146.4	-1	reviewed	p.A64D	1.000	62	0%	55	29.1%	3	66.6%	benign(0.086)	tolerated(0.2)	neutral(0.056)	NULL
MIR10A	406902	genome.wustl.edu	37	17	46657217	46657217	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385043	-1	known	NULL	1.000	67	0%	47	25.5%	0	-	-	-	-	-
HOXB7	3217	genome.wustl.edu	37	17	46685238	46685238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004502.3	-1	reviewed	p.D207G	1.000	109	0%	143	23.8%	16	0%	unknown(0)	-	-	NULL
MIR196A1	406972	genome.wustl.edu	37	17	46709859	46709859	+	RNA	SNP	G	G	A	rs186449583	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000388006	-1	known	NULL	0.860	32	0%	18	27.8%	0	-	-	-	-	-
TTLL6	284076	genome.wustl.edu	37	17	46846358	46846358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130918.1	-1	validated	p.R890M	0.752	138	0%	138	26.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
UBE2Z	65264	genome.wustl.edu	37	17	46990343	46990343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023079.3	+1	validated	p.N180D	1.000	105	0%	102	35.3%	51	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
LOC100131693	100131693	genome.wustl.edu	37	17	47502225	47502225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001726582.1	-1	model	p.E20D	0.999	280	0%	368	32.1%	2	0%	-	-	-	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
KAT7	11143	genome.wustl.edu	37	17	47895328	47895328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007067.3	+1	provisional	p.F370L	1.000	190	0%	140	24.3%	14	21.4%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_Acyl-CoA N-acyltransferases (Nat)
EPN3	55040	genome.wustl.edu	37	17	48618870	48618870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017957.2	+1	validated	p.G467V	0.915	119	0%	128	35.9%	20	30%	benign(0.354)	deleterious(0.01)	deleterious(0.518)	NULL
ABCC3	8714	genome.wustl.edu	37	17	48733345	48733345	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003786.3	+1	reviewed	p.L66	1.000	138	0%	103	45.6%	13	30.7%	-	-	-	NULL
SPAG9	9043	genome.wustl.edu	37	17	49064593	49064593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130528.2	-1	reviewed	p.D940G	0.997	200	0.5%	205	31.2%	15	33.3%	benign(0.02)	tolerated(0.22)	neutral(0.043)	NULL
MBTD1	54799	genome.wustl.edu	37	17	49272618	49272618	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017643.2	-1	validated	p.V443	0.988	111	0%	123	18.7%	4	50%	-	-	-	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
UTP18	51096	genome.wustl.edu	37	17	49357442	49357442	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016001.2	+1	validated	p.G363	0.365	59	0%	52	38.5%	30	43.3%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
CA10	56934	genome.wustl.edu	37	17	50149677	50149677	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001082533.1	-1	reviewed	e2+2	1.000	250	0%	174	25.3%	0	-	-	-	-	-
CA10	56934	genome.wustl.edu	37	17	50149693	50149693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001082533.1	-1	reviewed	p.G41V	1.000	286	0%	189	24.9%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
KIF2B	84643	genome.wustl.edu	37	17	51901031	51901031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032559.4	+1	validated	p.R213C	0.060	91	0%	85	28.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF2B	84643	genome.wustl.edu	37	17	51901032	51901032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032559.4	+1	validated	p.R213H	0.124	90	0%	86	26.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF2B	84643	genome.wustl.edu	37	17	51901521	51901521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032559.4	+1	validated	p.V376A	1.000	168	0%	153	32.7%	0	-	probably_damaging(0.973)	tolerated(0.06)	deleterious(0.738)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF2B	84643	genome.wustl.edu	37	17	51901609	51901609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032559.4	+1	validated	p.E405D	0.017	112	0%	112	31.2%	0	-	benign(0.004)	tolerated(0.27)	neutral(0.034)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
TOM1L1	10040	genome.wustl.edu	37	17	53037970	53037970	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005486.2	+1	validated	p.Q472*	0.000	291	0%	229	33.2%	34	58.8%	-	-	-	NULL
HLF	3131	genome.wustl.edu	37	17	53345361	53345361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002126.4	+1	reviewed	p.S122L	0.994	141	0%	121	32.2%	0	-	benign(0.011)	tolerated(0.09)	neutral(0.297)	NULL
DGKE	8526	genome.wustl.edu	37	17	54921517	54921517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003647.2	+1	reviewed	p.D201A	1.000	56	0%	64	25%	0	-	benign(0.059)	tolerated(0.75)	neutral(0.005)	NULL
TRIM25	7706	genome.wustl.edu	37	17	54981686	54981686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005082.4	-1	reviewed	p.S286N	0.072	454	0%	429	26.6%	9	55.5%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
SCPEP1	59342	genome.wustl.edu	37	17	55072981	55072981	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021626.2	+1	validated	p.E257	0.683	102	0%	94	29.8%	23	4.3%	-	-	-	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
EPX	8288	genome.wustl.edu	37	17	56270867	56270867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000502.4	+1	reviewed	p.E102D	0.749	193	0%	210	31.4%	0	-	benign(0.103)	tolerated(0.19)	neutral(0.058)	NULL
MKS1	54903	genome.wustl.edu	37	17	56294036	56294036	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000313863	-1	known	p.S85Y	1.000	94	0%	95	25.3%	13	46.1%	-	-	-	NULL
MKS1	54903	genome.wustl.edu	37	17	56296012	56296012	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000313863	-1	known	p.T54I	1.000	83	0%	79	36.7%	14	35.7%	-	-	-	NULL
BZRAP1	9256	genome.wustl.edu	37	17	56387878	56387878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004758.2	-1	validated	p.A1232T	0.996	40	0%	23	30.4%	5	60%	benign(0.386)	deleterious(0.01)	deleterious(0.529)	NULL
C17orf47	284083	genome.wustl.edu	37	17	56620968	56620968	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001038704.1	-1	predicted	p.L194V	0.006	196	0%	233	34.8%	0	-	benign(0.376)	-	-	NULL
TEX14	56155	genome.wustl.edu	37	17	56676845	56676845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198393.2	-1	reviewed	p.E621K	0.980	153	0%	159	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TEX14	56155	genome.wustl.edu	37	17	56692683	56692683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198393.2	-1	reviewed	p.V264A	1.000	121	0%	106	32.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
RAD51C	5889	genome.wustl.edu	37	17	56772357	56772357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058216.1	+1	reviewed	p.N71D	0.601	194	0%	141	31.2%	20	25%	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
PPM1E	22843	genome.wustl.edu	37	17	57049634	57049634	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014906.3	+1	reviewed	p.E372*	1.000	162	0%	142	29.6%	0	-	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PPM1E	22843	genome.wustl.edu	37	17	57057922	57057922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014906.3	+1	reviewed	p.A600T	1.000	388	0%	370	33.8%	0	-	possibly_damaging(0.739)	tolerated(0.07)	deleterious(0.590)	NULL
TRIM37	4591	genome.wustl.edu	37	17	57094720	57094720	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005207.2	-1	reviewed	p.R775*	1.000	206	0%	216	25.5%	7	0%	-	-	-	NULL
TRIM37	4591	genome.wustl.edu	37	17	57126585	57126585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005207.2	-1	reviewed	p.K495T	1.000	151	0%	127	31.5%	5	100%	possibly_damaging(0.527)	tolerated(0.12)	neutral(0.439)	NULL
TUBD1	51174	genome.wustl.edu	37	17	57941101	57941101	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016261.2	-1	validated	p.L395V	0.160	156	0%	115	17.4%	4	25%	probably_damaging(0.994)	tolerated(0.26)	deleterious(0.486)	superfamily_Tubulin C-terminal domain-like
ENSG00000238283	0	genome.wustl.edu	37	17	58094560	58094560	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000407042	-1	known	p.V46	0.005	114	0%	78	19.2%	0	-	-	-	-	NULL
HEATR6	63897	genome.wustl.edu	37	17	58123397	58123397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022070.4	-1	validated	p.A988V	1.000	87	0%	97	36.1%	5	60%	possibly_damaging(0.72)	tolerated(0.49)	neutral(0.272)	superfamily_ARM-type_fold
HEATR6	63897	genome.wustl.edu	37	17	58148146	58148146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022070.4	-1	validated	p.G241V	1.000	52	0%	60	23.3%	2	0%	unknown(0)	tolerated(0.08)	-	NULL
USP32	84669	genome.wustl.edu	37	17	58258686	58258686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032582.3	-1	validated	p.S1516L	1.000	158	0%	154	31.2%	14	14.2%	probably_damaging(0.978)	tolerated(0.13)	deleterious(0.673)	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_SSF54001
USP32	84669	genome.wustl.edu	37	17	58299847	58299847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032582.3	-1	validated	p.D558Y	1.000	371	0%	381	33.9%	7	42.8%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMSmart_DUSP,HMMPfam_DUF1055
C17orf64	124773	genome.wustl.edu	37	17	58506896	58506896	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181707.2	+1	validated	p.R201	0.000	51	0%	29	17.2%	0	-	-	-	-	NULL
PPM1D	8493	genome.wustl.edu	37	17	58740810	58740810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003620.2	+1	reviewed	p.R572Q	0.998	174	0%	168	12.5%	23	13%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BRIP1	83990	genome.wustl.edu	37	17	59761048	59761048	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032043.1	-1	reviewed	p.D1120A	0.000	205	0%	190	34.2%	1	100%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
INTS2	57508	genome.wustl.edu	37	17	59981936	59981936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020748.2	-1	validated	p.E406K	1.000	84	0%	78	26.9%	1	0%	probably_damaging(0.96)	deleterious(0.03)	deleterious(0.768)	NULL
INTS2	57508	genome.wustl.edu	37	17	60003813	60003813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020748.2	-1	validated	p.R73C	1.000	138	0%	130	30%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
MED13	9969	genome.wustl.edu	37	17	60088343	60088343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005121.2	-1	reviewed	p.R512Q	1.000	135	0%	139	28.1%	4	0%	probably_damaging(0.986)	tolerated(0.42)	neutral(0.449)	NULL
MED13	9969	genome.wustl.edu	37	17	60140635	60140635	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005121.2	-1	reviewed	p.K32Q	1.000	104	0%	99	37.4%	0	-	benign(0.031)	tolerated(0.13)	neutral(0.254)	NULL
ENSG00000188755	0	genome.wustl.edu	37	17	60351202	60351202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000339120	-1	known	p.P38H	0.072	156	0%	84	26.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
EFCAB3	146779	genome.wustl.edu	37	17	60460344	60460344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144933.1	+1	validated	p.A54T	0.990	98	0%	86	27.9%	0	-	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	superfamily_EF-hand
EFCAB3	146779	genome.wustl.edu	37	17	60484019	60484019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144933.1	+1	validated	p.L275I	1.000	125	0%	145	33.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TLK2	11011	genome.wustl.edu	37	17	60685476	60685476	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006852.3	+1	validated	p.F682	0.998	99	0%	116	31.9%	27	44.4%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MARCH10	162333	genome.wustl.edu	37	17	60779070	60779070	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100875.1	-1	validated	p.V807	0.012	147	0%	109	29.4%	0	-	-	-	-	NULL
MARCH10	162333	genome.wustl.edu	37	17	60821759	60821759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100875.1	-1	validated	p.K171N	0.014	172	0%	142	27.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TANC2	26115	genome.wustl.edu	37	17	61457183	61457183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025185.3	+1	validated	p.F822C	1.000	360	0%	279	29.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TANC2	26115	genome.wustl.edu	37	17	61498226	61498226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025185.3	+1	validated	p.I1628T	1.000	158	0%	174	33.9%	0	-	benign(0.032)	deleterious(0)	neutral(0.446)	NULL
ACE	1636	genome.wustl.edu	37	17	61560856	61560856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000789.2	+1	reviewed	p.R508Q	0.845	56	0%	47	27.7%	5	40%	benign(0.234)	tolerated(0.58)	neutral(0.029)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
MAP3K3	4215	genome.wustl.edu	37	17	61769157	61769157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203351.1	+1	reviewed	p.T501M	1.000	95	0%	69	31.9%	8	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PSMC5	5705	genome.wustl.edu	37	17	61907805	61907805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002805.4	+1	reviewed	p.E166K	1.000	109	0%	95	28.4%	226	42.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CD79B	974	genome.wustl.edu	37	17	62007698	62007698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039933.1	-1	reviewed	p.K57Q	0.898	27	0%	47	40.4%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CEP95	90799	genome.wustl.edu	37	17	62533231	62533231	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138363.1	+1	provisional	e19+1	1.000	88	0%	87	26.4%	4	100%	-	-	-	-
SMURF2	64750	genome.wustl.edu	37	17	62594511	62594511	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022739.3	-1	validated	p.Q63	1.000	305	0%	238	30.7%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
LOC100289243	100289243	genome.wustl.edu	37	17	62747193	62747193	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343577.1	+1	model	p.K222T	1.000	107	0%	136	30.9%	1	100%	-	-	-	HMMPfam_Sec63,HMMSmart_SM00611
ENSG00000214176	0	genome.wustl.edu	37	17	62818111	62818111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000397718	-1	known	p.E166K	1.000	71	0%	70	24.3%	4	100%	benign(0.35)	tolerated(0.21)	neutral(0.155)	HMMPfam_RUN
LRRC37A3	374819	genome.wustl.edu	37	17	62892245	62892245	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199340.2	-1	provisional	p.P377	0.000	767	0.1%	773	15.5%	0	-	-	-	-	NULL
GNA13	10672	genome.wustl.edu	37	17	63010731	63010731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006572.4	-1	validated	p.R260*	1.000	214	0%	220	29.5%	3	33.3%	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
GNA13	10672	genome.wustl.edu	37	17	63049823	63049823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006572.4	-1	validated	p.R103*	0.904	264	0%	237	33.3%	9	0%	-	-	-	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
AXIN2	8313	genome.wustl.edu	37	17	63533916	63533916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004655.3	-1	reviewed	p.S413L	0.002	8	0.000	5	0.800	13	53.8%	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
CEP112	201134	genome.wustl.edu	37	17	63848110	63848110	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145036.3	-1	validated	p.E736*	1.000	109	0%	91	35.2%	2	0%	-	-	-	NULL
PRKCA	5578	genome.wustl.edu	37	17	64800106	64800106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002737.2	+1	reviewed	p.S657L	1.000	41	0%	53	24.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00133,HMMPfam_Pkinase_C
CACNG4	27092	genome.wustl.edu	37	17	65026678	65026678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014405.2	+1	reviewed	p.Y181C	1.000	582	0%	515	33%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMP22_Claudin
HELZ	9931	genome.wustl.edu	37	17	65105444	65105444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014877.3	-1	validated	p.G1426E	0.993	149	0%	139	38.8%	13	61.5%	unknown(0)	deleterious(0)	-	NULL
HELZ	9931	genome.wustl.edu	37	17	65163814	65163814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014877.3	-1	validated	p.R510H	1.000	307	0%	214	31.3%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HELZ	9931	genome.wustl.edu	37	17	65186388	65186388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014877.3	-1	validated	p.R214I	1.000	116	0%	86	32.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PSMD12	5718	genome.wustl.edu	37	17	65344684	65344684	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002816.3	-1	reviewed	p.S164	0.996	125	0%	100	30%	75	56%	-	-	-	NULL
BPTF	2186	genome.wustl.edu	37	17	65941546	65941546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182641.3	+1	reviewed	p.S2241N	1.000	143	0%	151	27.8%	5	0%	benign(0.195)	tolerated(0.38)	neutral(0.036)	NULL
WIPI1	55062	genome.wustl.edu	37	17	66432541	66432541	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017983.5	-1	validated	p.L170	1.000	107	0%	103	39.8%	5	0%	-	-	-	superfamily_WD40 repeat-like
FAM20A	54757	genome.wustl.edu	37	17	66533822	66533822	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017565.3	-1	validated	p.S474	0.910	35	0%	25	40%	6	0%	-	-	-	HMMPfam_DUF1193
ABCA8	10351	genome.wustl.edu	37	17	66938093	66938093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007168.2	-1	reviewed	p.R28I	0.996	201	0%	208	27.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67016553	67016553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080283.3	-1	reviewed	p.K859T	0.002	219	0%	168	31.5%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67028402	67028402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080283.3	-1	reviewed	p.R431Q	0.000	82	0%	82	24.4%	0	-	benign(0.009)	tolerated(0.34)	neutral(0.024)	NULL
ABCA6	23460	genome.wustl.edu	37	17	67084337	67084337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080284.2	-1	reviewed	p.K1223N	0.893	177	0%	121	26.4%	0	-	possibly_damaging(0.522)	tolerated(0.5)	neutral(0.186)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67150093	67150093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080282.3	-1	reviewed	p.F1282L	0.065	214	0.5%	180	37.2%	0	-	possibly_damaging(0.947)	tolerated(0.16)	neutral(0.450)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA10	10349	genome.wustl.edu	37	17	67170764	67170764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080282.3	-1	reviewed	p.E1011G	0.000	580	0%	459	32.9%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67170765	67170765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080282.3	-1	reviewed	p.E1011K	0.000	579	0%	456	33.1%	0	-	benign(0.045)	tolerated(0.91)	neutral(0.003)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67183865	67183865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080282.3	-1	reviewed	p.R763C	0.197	227	0%	178	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67186509	67186509	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080282.3	-1	reviewed	p.I707	0.023	163	0%	138	36.2%	0	-	-	-	-	NULL
ABCA10	10349	genome.wustl.edu	37	17	67189746	67189746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080282.3	-1	reviewed	p.R510I	0.950	93	0%	68	29.4%	0	-	benign(0.003)	deleterious(0.03)	neutral(0.364)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA5	23461	genome.wustl.edu	37	17	67249939	67249939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018672.3	-1	reviewed	p.R1439Q	1.000	108	0%	79	26.6%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA5	23461	genome.wustl.edu	37	17	67293434	67293434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018672.3	-1	reviewed	p.R445I	1.000	225	0%	168	32.7%	0	-	benign(0.253)	tolerated(0.05)	neutral(0.371)	NULL
LOC124685	124685	genome.wustl.edu	37	17	69617491	69617491	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_040247.2	+1	model	NULL	1.000	90	0%	78	30.8%	0	-	-	-	-	-
CDC42EP4	23580	genome.wustl.edu	37	17	71281904	71281904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012121.4	-1	reviewed	p.A246T	0.000	39	0%	40	30%	39	33.3%	benign(0.017)	tolerated(0.53)	neutral(0.008)	NULL
SDK2	54549	genome.wustl.edu	37	17	71380057	71380057	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144952.1	-1	provisional	p.R1555*	0.381	70	0%	76	23.7%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SDK2	54549	genome.wustl.edu	37	17	71391349	71391349	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144952.1	-1	provisional	p.N1179	0.899	16	0%	23	21.7%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SDK2	54549	genome.wustl.edu	37	17	71391487	71391487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144952.1	-1	provisional	p.G1133	1.000	43	0%	40	27.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TTYH2	94015	genome.wustl.edu	37	17	72218625	72218625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032646.5	+1	reviewed	p.S44L	1.000	15	0%	23	34.8%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Tweety
DNAI2	64446	genome.wustl.edu	37	17	72297260	72297260	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023036.4	+1	reviewed	p.L314	0.007	155	0.6%	121	27.3%	0	-	-	-	-	superfamily_WD40 repeat-like
DNAI2	64446	genome.wustl.edu	37	17	72308306	72308306	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023036.4	+1	reviewed	p.F553	0.016	13	0%	15	40%	0	-	-	-	-	superfamily_WD40 repeat-like
GPR142	350383	genome.wustl.edu	37	17	72368624	72368624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181790.1	+1	provisional	p.V425A	1.000	65	0%	44	22.7%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_SSF81321
CD300LD	100131439	genome.wustl.edu	37	17	72584683	72584683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001115152.1	-1	provisional	p.L116I	0.005	228	0%	275	31.6%	0	-	possibly_damaging(0.592)	tolerated(0.07)	deleterious(0.523)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CD300LD	100131439	genome.wustl.edu	37	17	72584974	72584974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001115152.1	-1	provisional	p.A19T	0.000	197	0%	213	25.4%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_V-set
CD300E	342510	genome.wustl.edu	37	17	72613293	72613293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181449.1	-1	provisional	p.D118N	0.005	444	0%	467	26.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409
CD300LF	146722	genome.wustl.edu	37	17	72691278	72691278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139018.3	-1	validated	p.G277D	0.000	41	0%	58	31%	0	-	possibly_damaging(0.824)	tolerated(0.95)	neutral(0.312)	NULL
GRIN2C	2905	genome.wustl.edu	37	17	72844040	72844040	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000835.3	-1	reviewed	p.F574	0.997	34	0%	22	31.8%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
FDXR	2232	genome.wustl.edu	37	17	72860104	72860104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004110.3	-1	reviewed	p.K369T	1.000	57	0%	58	31%	91	45%	benign(0.041)	deleterious(0)	neutral(0.447)	HMMPfam_Pyr_redox_2,superfamily_SSF51971
OTOP3	347741	genome.wustl.edu	37	17	72942967	72942967	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178233.1	+1	provisional	p.F339	0.706	54	0%	38	36.8%	0	-	-	-	-	NULL
GGA3	23163	genome.wustl.edu	37	17	73234827	73234827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138619.2	-1	reviewed	p.L656S	1.000	79	0%	34	41.2%	17	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Clathrin adaptor appendage domain
RECQL5	9400	genome.wustl.edu	37	17	73627235	73627235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004259.5	-1	validated	p.R515C	1.000	61	0%	44	25%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBE2O	63893	genome.wustl.edu	37	17	74392498	74392498	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022066.3	-1	validated	p.P840	0.995	163	0%	130	36.2%	6	16.6%	-	-	-	NULL
TNRC6C	57690	genome.wustl.edu	37	17	76046644	76046644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142640.1	+1	validated	p.T501A	1.000	203	0%	161	34.2%	0	-	probably_damaging(0.977)	tolerated(0.06)	deleterious(0.742)	NULL
TNRC6C	57690	genome.wustl.edu	37	17	76047222	76047222	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142640.1	+1	validated	p.I693	0.098	25	0%	33	15.2%	1	0%	-	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76497854	76497854	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000389840	-1	known	p.R1753	0.988	66	0%	50	24%	0	-	-	-	-	NULL
CYTH1	9267	genome.wustl.edu	37	17	76705766	76705766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004762.2	-1	reviewed	p.R24Q	1.000	149	0%	135	26.7%	2	50%	benign(0.29)	deleterious(0.05)	neutral(0.435)	NULL
USP36	57602	genome.wustl.edu	37	17	76794618	76794618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025090.3	-1	validated	p.K1086Q	0.998	243	0%	231	26.4%	13	15.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
TIMP2	7077	genome.wustl.edu	37	17	76851766	76851766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003255.4	-1	reviewed	p.D216N	1.000	43	0%	37	21.6%	135	12.5%	probably_damaging(0.955)	tolerated(0.38)	neutral(0.416)	NULL
TIMP2	7077	genome.wustl.edu	37	17	76851839	76851839	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003255.4	-1	reviewed	p.F191	0.991	55	0%	58	31%	131	12.2%	-	-	-	HMMPfam_TIMP,HMMSmart_NTR,superfamily_TIMP_like
CANT1	124583	genome.wustl.edu	37	17	76991254	76991254	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138793.3	-1	reviewed	p.G227	0.652	30	0%	31	19.4%	28	46.4%	-	-	-	HMMPfam_Apyrase,superfamily_Apyrase
SLC26A11	284129	genome.wustl.edu	37	17	78210729	78210729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173626.3	+1	reviewed	p.R247C	1.000	127	0%	118	38.1%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfate_transp
RNF213	57674	genome.wustl.edu	37	17	78317012	78317012	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000508628	+1	known	p.R2024*	0.981	32	0%	27	55.6%	0	-	-	-	-	NULL
ENSG00000237199	0	genome.wustl.edu	37	17	78326559	78326559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000437954	-1	known	p.H154R	0.000	22	0%	26	26.9%	0	-	-	-	-	NULL
CCDC57	284001	genome.wustl.edu	37	17	80153195	80153195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198082.2	-1	validated	p.E188K	0.024	14	0%	22	22.7%	1	100%	possibly_damaging(0.923)	deleterious(0.03)	deleterious(0.737)	NULL
C17orf101	79701	genome.wustl.edu	37	17	80373404	80373404	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175902.4	-1	validated	p.L58	0.000	51	0%	42	47.6%	24	37.5%	-	-	-	NULL
TBCD	6904	genome.wustl.edu	37	17	80878488	80878488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005993.4	+1	reviewed	p.V699I	0.000	8	0.000	13	0.308	39	51.2%	benign(0.002)	tolerated(0.44)	neutral(0.013)	superfamily_ARM repeat
ENSG00000173213	0	genome.wustl.edu	37	18	47680	47680	+	Missense_Mutation	SNP	C	C	T	rs191210390	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000308911	-1	known	p.V349I	1.000	215	0%	137	31.4%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
COLEC12	81035	genome.wustl.edu	37	18	331708	331708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130386.2	-1	validated	p.N675H	0.985	118	0%	70	30%	5	0%	possibly_damaging(0.878)	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CETN1	1068	genome.wustl.edu	37	18	580592	580592	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004066.1	+1	reviewed	p.F62V	1.000	38	0%	39	28.2%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	superfamily_EF-hand
CETN1	1068	genome.wustl.edu	37	18	580773	580773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004066.1	+1	reviewed	p.S122L	0.997	115	0%	115	37.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
ENOSF1	55556	genome.wustl.edu	37	18	683362	683362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_202758.2	-1	validated	p.R275C	1.000	93	0%	113	32.7%	24	41.6%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_MR_MLE,PatternScan_MR_MLE_2,superfamily_SSF51604
ADCYAP1	116	genome.wustl.edu	37	18	909539	909539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099733.1	+1	reviewed	p.R145Q	1.000	236	0%	136	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_2,HMMSmart_GLUCA,PatternScan_GLUCAGON
ADCYAP1	116	genome.wustl.edu	37	18	909620	909620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099733.1	+1	reviewed	p.R172Q	1.000	238	0%	114	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
METTL4	64863	genome.wustl.edu	37	18	2563825	2563825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022840.3	-1	validated	p.E144K	1.000	169	0%	140	37.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NDC80	10403	genome.wustl.edu	37	18	2587861	2587861	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006101.2	+1	validated	p.E234	0.357	98	0%	82	30.5%	16	43.7%	-	-	-	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2694562	2694562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015295.2	+1	validated	p.R304I	1.000	37	0%	47	31.9%	1	100%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SMCHD1	23347	genome.wustl.edu	37	18	2718183	2718183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015295.2	+1	validated	p.S763L	1.000	179	0%	137	10.9%	3	33.3%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2891355	2891355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032048.2	+1	validated	p.K410N	0.002	98	0%	92	26.1%	4	0%	benign(0.039)	tolerated(0.11)	neutral(0.274)	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2913152	2913152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032048.2	+1	validated	p.S971L	1.000	49	0%	42	28.6%	6	0%	benign(0.32)	deleterious(0)	deleterious(0.544)	superfamily_TNF_like
LPIN2	9663	genome.wustl.edu	37	18	2927785	2927785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014646.2	-1	reviewed	p.D549Y	1.000	137	0%	108	29.6%	3	66.6%	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	NULL
ENSG00000252258	0	genome.wustl.edu	37	18	3025544	3025544	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000516449	-1	novel	NULL	0.000	83	0%	97	29.9%	0	-	-	-	-	-
MYOM1	8736	genome.wustl.edu	37	18	3112406	3112406	+	Missense_Mutation	SNP	C	C	T	rs186972208	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003803.3	-1	reviewed	p.R1103Q	0.745	55	0%	48	27.1%	0	-	benign(0.001)	tolerated(0.67)	neutral(0.003)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MYOM1	8736	genome.wustl.edu	37	18	3189054	3189054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003803.3	-1	reviewed	p.E155K	0.997	143	0%	117	35.9%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ZFP161	7541	genome.wustl.edu	37	18	5292107	5292107	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143823.1	-1	validated	p.E34*	1.000	124	0%	64	23.4%	3	0%	-	-	-	superfamily_BTB/POZ_fold,HMMPfam_BTB
EPB41L3	23136	genome.wustl.edu	37	18	5428394	5428394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012307.2	-1	provisional	p.R328Q	1.000	332	0%	244	26.6%	3	0%	probably_damaging(0.977)	deleterious(0.05)	deleterious(0.764)	HMMPfam_FERM_C,superfamily_PH domain-like
L3MBTL4	91133	genome.wustl.edu	37	18	6263973	6263973	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173464.3	-1	validated	p.V64	0.085	211	0%	158	30.4%	0	-	-	-	-	HMMSmart_MBT,superfamily_SSF63748
ARHGAP28	79822	genome.wustl.edu	37	18	6837267	6837267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000400091	+1	known	p.D133Y	1.000	41	0%	55	38.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LAMA1	284217	genome.wustl.edu	37	18	6985300	6985300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005559.2	-1	validated	p.D1866N	0.230	155	0%	155	19.4%	0	-	possibly_damaging(0.639)	deleterious(0.03)	deleterious(0.588)	superfamily_Concanavalin A-like lectins/glucanases
PTPRM	5797	genome.wustl.edu	37	18	8069787	8069787	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105244.1	+1	reviewed	p.S412	0.992	192	0%	136	11%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRM	5797	genome.wustl.edu	37	18	8085711	8085711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105244.1	+1	reviewed	p.L532V	1.000	106	0%	94	27.7%	3	0%	benign(0.005)	tolerated(0.89)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SOGA2	23255	genome.wustl.edu	37	18	8783588	8783588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015210.3	+1	predicted	p.R160C	1.000	16	0%	21	23.8%	1	100%	possibly_damaging(0.439)	tolerated(0.14)	neutral(0.392)	NULL
SOGA2	23255	genome.wustl.edu	37	18	8812994	8812994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015210.3	+1	predicted	p.E874D	0.993	86	0%	75	29.3%	0	-	possibly_damaging(0.512)	tolerated(0.3)	neutral(0.200)	NULL
SOGA2	23255	genome.wustl.edu	37	18	8824824	8824824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015210.3	+1	predicted	p.L1106I	1.000	57	0%	47	34%	1	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
ANKRD12	23253	genome.wustl.edu	37	18	9195595	9195595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015208.3	+1	validated	p.R45Q	1.000	92	0%	84	31%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TWSG1	57045	genome.wustl.edu	37	18	9396408	9396408	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020648.5	+1	validated	p.I118	0.978	143	0%	144	33.3%	50	40%	-	-	-	HMMPfam_Tsg
PPP4R1	9989	genome.wustl.edu	37	18	9550053	9550053	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042388.1	-1	validated	p.C848	1.000	107	0%	110	39.1%	39	58.9%	-	-	-	superfamily_ARM repeat
TXNDC2	84203	genome.wustl.edu	37	18	9887209	9887209	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098529.1	+1	validated	p.E245*	0.000	597	0%	572	31.1%	0	-	-	-	-	NULL
APCDD1	147495	genome.wustl.edu	37	18	10485597	10485597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153000.4	+1	validated	p.E305K	1.000	62	0%	36	30.6%	59	1.6%	probably_damaging(0.999)	tolerated(0.9)	deleterious(0.490)	NULL
GNAL	2774	genome.wustl.edu	37	18	11753678	11753678	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182978.2	+1	validated	p.I167	0.998	132	0%	72	33.3%	0	-	-	-	-	HMMPfam_G-alpha,superfamily_Transducn_insert,superfamily_SSF52540
CIDEA	1149	genome.wustl.edu	37	18	12274154	12274154	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198289.2	+1	reviewed	p.F165	0.881	82	0%	96	22.9%	0	-	-	-	-	NULL
LOC100289263	100289263	genome.wustl.edu	37	18	12325598	12325598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002344141.1	-1	model	p.E38K	0.770	51	0%	46	32.6%	107	41.1%	-	-	-	NULL
AFG3L2	10939	genome.wustl.edu	37	18	12351390	12351390	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006796.1	-1	reviewed	p.V447	0.029	92	0%	98	39.8%	39	38.4%	-	-	-	HMMSmart_AAA,HMMPfam_AAA,PatternScan_AAA,superfamily_SSF52540
AFG3L2	10939	genome.wustl.edu	37	18	12353104	12353104	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006796.1	-1	reviewed	p.I406	1.000	173	0.6%	236	29.2%	51	45%	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
AFG3L2	10939	genome.wustl.edu	37	18	12367098	12367098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006796.1	-1	reviewed	p.D140N	1.000	92	0%	114	33.3%	26	34.6%	benign(0.007)	tolerated(0.29)	neutral(0.029)	NULL
SLMO1	10650	genome.wustl.edu	37	18	12427319	12427319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142405.1	+1	validated	p.K154N	0.990	147	0%	155	34.8%	2	50%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_PRELI
PSMG2	56984	genome.wustl.edu	37	18	12706652	12706652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020232.3	+1	provisional	p.P54L	1.000	227	0%	250	30.8%	91	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCCA3
CEP192	55125	genome.wustl.edu	37	18	13049191	13049191	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032142.3	+1	validated	p.S205A	0.002	166	0%	145	31.7%	0	-	benign(0.396)	deleterious(0)	deleterious(0.572)	NULL
CEP192	55125	genome.wustl.edu	37	18	13068895	13068895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032142.3	+1	validated	p.E1027K	1.000	240	0%	173	30.6%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM210A	125228	genome.wustl.edu	37	18	13681703	13681703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098801.1	-1	validated	p.R125Q	1.000	290	0%	283	31.8%	2	0%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_DUF1279
RNMT	8731	genome.wustl.edu	37	18	13731732	13731732	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003799.1	+1	provisional	p.S72R	0.098	115	0%	138	19.6%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC646359	646359	genome.wustl.edu	37	18	14378217	14378217	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_929288.3	-1	model	p.V182	0.308	97	0%	96	20.8%	0	-	-	-	-	HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain
POTEC	388468	genome.wustl.edu	37	18	14542879	14542879	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001137671.1	-1	validated	p.S89	0.005	198	0%	201	23.4%	0	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14852060	14852060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145029.1	+1	validated	p.L1254I	0.992	51	0%	33	21.2%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
ROCK1	6093	genome.wustl.edu	37	18	18572895	18572895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005406.2	-1	reviewed	p.R630Q	1.000	205	0%	146	25.3%	15	26.6%	possibly_damaging(0.581)	tolerated(0.21)	neutral(0.244)	NULL
ESCO1	114799	genome.wustl.edu	37	18	19153436	19153436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052911.2	-1	validated	p.E457*	0.976	162	0%	199	30.7%	2	50%	-	-	-	NULL
SNRPD1	6632	genome.wustl.edu	37	18	19203799	19203799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006938.2	+1	reviewed	p.R61Q	1.000	200	0%	193	26.9%	225	36.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
CTAGE1	64693	genome.wustl.edu	37	18	19995786	19995786	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172241.2	-1	validated	p.P663	0.253	880	0.1%	768	28.1%	0	-	-	-	-	NULL
RBBP8	5932	genome.wustl.edu	37	18	20602122	20602122	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002894.2	+1	reviewed	p.E829*	1.000	190	0%	110	32.7%	32	25%	-	-	-	HMMPfam_SAE2
RBBP8	5932	genome.wustl.edu	37	18	20606175	20606175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002894.2	+1	reviewed	p.S889Y	1.000	44	0%	62	29%	41	73.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CABLES1	91768	genome.wustl.edu	37	18	20793964	20793964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100619.2	+1	validated	p.R345I	1.000	261	0%	222	33.3%	4	100%	probably_damaging(0.996)	tolerated(0.23)	deleterious(0.503)	NULL
CABLES1	91768	genome.wustl.edu	37	18	20817148	20817148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100619.2	+1	validated	p.L462S	1.000	94	2.1%	96	26%	17	35.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CABLES1	91768	genome.wustl.edu	37	18	20837268	20837268	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100619.2	+1	validated	p.F613	1.000	107	0%	93	29%	9	66.6%	-	-	-	superfamily_Cyclin-like
RIOK3	8780	genome.wustl.edu	37	18	21044530	21044530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003831.3	+1	reviewed	p.D161Y	1.000	198	0%	145	33.8%	14	42.8%	benign(0.003)	tolerated(0.11)	neutral(0.272)	NULL
NPC1	4864	genome.wustl.edu	37	18	21121069	21121069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000271.4	-1	reviewed	p.S826Y	0.726	175	0%	156	28.8%	18	11.1%	benign(0.093)	deleterious(0.01)	neutral(0.413)	HMMPfam_Patched
ANKRD29	147463	genome.wustl.edu	37	18	21229153	21229153	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173505.2	-1	validated	p.E9A	1.000	86	0%	60	20%	0	-	probably_damaging(0.995)	tolerated(0.12)	deleterious(0.718)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21399891	21399891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198129.1	+1	reviewed	p.R745Q	1.000	187	0%	142	33.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21494398	21494398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198129.1	+1	reviewed	p.A2452T	1.000	50	0%	72	20.8%	62	40.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
TTC39C	125488	genome.wustl.edu	37	18	21660643	21660643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001135993.1	+1	validated	p.K185N	1.000	128	0%	134	12.7%	4	0%	benign(0.13)	tolerated(0.18)	neutral(0.067)	HMMPfam_Deme6
CABYR	26256	genome.wustl.edu	37	18	21735967	21735967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012189.2	+1	reviewed	p.V168I	1.000	198	0.5%	196	28.1%	2	100%	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
HRH4	59340	genome.wustl.edu	37	18	22048893	22048893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021624.3	+1	reviewed	p.R112Q	1.000	101	0%	114	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
HRH4	59340	genome.wustl.edu	37	18	22056924	22056924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021624.3	+1	reviewed	p.A191T	0.466	353	0%	353	32.9%	0	-	benign(0.023)	tolerated(0.92)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF521	25925	genome.wustl.edu	37	18	22806254	22806254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015461.2	-1	validated	p.R543Q	0.997	209	0.5%	162	27.8%	2	50%	benign(0.103)	tolerated(0.15)	neutral(0.249)	NULL
CDH2	1000	genome.wustl.edu	37	18	25565698	25565698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001792.3	-1	reviewed	p.T590M	0.998	147	0%	125	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH2	1000	genome.wustl.edu	37	18	25589704	25589704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001792.3	-1	reviewed	p.R227C	1.000	159	0%	146	36.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH2	1000	genome.wustl.edu	37	18	25616465	25616465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000399380	-1	known	p.K16N	0.354	255	0%	208	31.2%	0	-	benign(0.006)	tolerated(0.21)	neutral(0.044)	HMMPfam_Cadherin_pro,superfamily_Cadherin
DSC3	1825	genome.wustl.edu	37	18	28598185	28598185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001941.3	-1	reviewed	p.E372G	0.874	138	0%	111	23.4%	0	-	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	HMMPfam_Cadherin,superfamily_Cadherin-like
DSC3	1825	genome.wustl.edu	37	18	28605815	28605815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001941.3	-1	reviewed	p.E181*	1.000	145	0%	137	29.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC3	1825	genome.wustl.edu	37	18	28612212	28612212	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001941.3	-1	reviewed	p.K34Q	0.100	235	0%	186	25.8%	0	-	possibly_damaging(0.822)	tolerated(0.07)	deleterious(0.630)	HMMPfam_Cadherin_pro,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28926072	28926072	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001942.2	+1	reviewed	p.E671*	1.000	201	0%	208	24%	0	-	-	-	-	HMMPfam_Cadherin_C
DSG1	1828	genome.wustl.edu	37	18	28934805	28934805	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001942.2	+1	reviewed	p.E882	0.902	331	0%	281	30.2%	0	-	-	-	-	NULL
DSG3	1830	genome.wustl.edu	37	18	29038448	29038448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001944.2	+1	reviewed	p.R86Q	0.001	240	0.4%	222	27.5%	0	-	benign(0.031)	tolerated(0.05)	neutral(0.347)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSG3	1830	genome.wustl.edu	37	18	29056028	29056028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001944.2	+1	reviewed	p.E935D	0.862	170	0%	157	28.7%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
DSG2	1829	genome.wustl.edu	37	18	29122789	29122789	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001943.3	+1	reviewed	p.E770*	0.982	124	0%	111	32.4%	92	54.3%	-	-	-	NULL
DSG2	1829	genome.wustl.edu	37	18	29125729	29125729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001943.3	+1	reviewed	p.D794Y	1.000	262	0%	274	29.6%	65	32.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MCART2	147407	genome.wustl.edu	37	18	29340011	29340011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001034172.2	-1	validated	p.T205M	0.002	239	0%	223	29.6%	1	0%	possibly_damaging(0.506)	tolerated(0.12)	neutral(0.430)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
MCART2	147407	genome.wustl.edu	37	18	29340044	29340044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001034172.2	-1	validated	p.R194Q	0.995	207	0%	196	40.8%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
TRAPPC8	22878	genome.wustl.edu	37	18	29497601	29497601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014939.3	-1	validated	p.E128K	1.000	386	0%	245	29.4%	0	-	possibly_damaging(0.947)	deleterious(0.03)	deleterious(0.755)	NULL
RNF125	54941	genome.wustl.edu	37	18	29617215	29617215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017831.3	+1	reviewed	p.A101T	0.451	252	0%	313	16.6%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
RNF125	54941	genome.wustl.edu	37	18	29622192	29622192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017831.3	+1	reviewed	p.I123M	1.000	37	0%	31	41.9%	0	-	probably_damaging(0.996)	tolerated(0.21)	deleterious(0.506)	NULL
MEP1B	4225	genome.wustl.edu	37	18	29770079	29770079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005925.2	+1	validated	p.L16F	0.041	53	0%	55	30.9%	0	-	benign(0.167)	tolerated(0.21)	neutral(0.059)	NULL
MEP1B	4225	genome.wustl.edu	37	18	29782855	29782855	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005925.2	+1	validated	e6-1	1.000	39	0%	35	37.1%	0	-	-	-	-	-
MEP1B	4225	genome.wustl.edu	37	18	29790487	29790487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005925.2	+1	validated	p.D315N	0.008	119	0%	99	39.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1
FAM59A	64762	genome.wustl.edu	37	18	29847986	29847986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022751.1	-1	provisional	p.E826K	1.000	87	0%	66	10.6%	3	33.3%	possibly_damaging(0.862)	deleterious(0.03)	deleterious(0.698)	HMMPfam_SAM_1,superfamily_SAM_homology
FAM59A	64762	genome.wustl.edu	37	18	29850225	29850225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022751.1	-1	provisional	p.S563Y	1.000	34	0%	30	26.7%	4	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FAM59A	64762	genome.wustl.edu	37	18	29867558	29867558	+	Silent	SNP	G	G	A	rs184904701	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022751.1	-1	provisional	p.F334	0.970	153	0%	150	29.3%	2	100%	-	-	-	NULL
C18orf34	374864	genome.wustl.edu	37	18	30926334	30926334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105528.1	-1	validated	p.L167I	0.932	155	0%	107	23.4%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
C18orf34	374864	genome.wustl.edu	37	18	30977167	30977167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105528.1	-1	validated	p.T22A	0.000	106	0%	88	35.2%	0	-	benign(0.181)	deleterious(0)	neutral(0.461)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31319953	31319953	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030632.1	+1	provisional	p.K862T	0.995	110	0%	87	36.8%	0	-	benign(0.259)	deleterious(0)	deleterious(0.472)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31325277	31325277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030632.1	+1	provisional	p.K1822T	1.000	237	0.4%	236	22.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NOL4	8715	genome.wustl.edu	37	18	31523095	31523095	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003787.3	-1	validated	p.I492	1.000	169	0%	149	26.8%	0	-	-	-	-	NULL
NOL4	8715	genome.wustl.edu	37	18	31599559	31599559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003787.3	-1	validated	p.S260Y	1.000	110	0%	148	31.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DTNA	1837	genome.wustl.edu	37	18	32438275	32438275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001390.4	+1	reviewed	p.L493R	1.000	113	0%	79	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DTNA	1837	genome.wustl.edu	37	18	32455326	32455326	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001390.4	+1	reviewed	p.G596*	1.000	77	0%	66	34.8%	0	-	-	-	-	NULL
ZSCAN30	100101467	genome.wustl.edu	37	18	32833601	32833601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001112734.2	-1	validated	p.R433I	1.000	211	0%	218	32.6%	1	100%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZSCAN30	100101467	genome.wustl.edu	37	18	32844108	32844108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001112734.2	-1	validated	p.R70Q	0.410	103	0%	84	35.7%	2	100%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_SCAN,HMMSmart_SM00431
SLC39A6	25800	genome.wustl.edu	37	18	33703614	33703614	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012319.3	-1	validated	p.G328	0.996	666	0%	591	24.7%	38	39.4%	-	-	-	HMMPfam_Zip
MOCOS	55034	genome.wustl.edu	37	18	33780267	33780267	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017947.2	+1	validated	p.P307	0.000	64	0%	70	30%	0	-	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
FHOD3	80206	genome.wustl.edu	37	18	34191951	34191951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025135.2	+1	validated	p.D284N	1.000	100	0%	88	36.4%	0	-	possibly_damaging(0.879)	deleterious(0)	deleterious(0.787)	NULL
FHOD3	80206	genome.wustl.edu	37	18	34298241	34298241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025135.2	+1	validated	p.D819Y	1.000	197	0%	173	27.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KIAA1328	57536	genome.wustl.edu	37	18	34647291	34647291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020776.1	+1	validated	p.R339W	0.973	213	0%	194	34.5%	1	0%	possibly_damaging(0.9)	deleterious(0.03)	deleterious(0.721)	NULL
CELF4	56853	genome.wustl.edu	37	18	34854356	34854356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020180.3	-1	reviewed	p.R240Q	1.000	45	0%	36	38.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42530863	42530863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015559.2	+1	validated	p.E520*	0.972	402	0%	366	33.6%	0	-	-	-	-	NULL
LOC100131669	100131669	genome.wustl.edu	37	18	42643084	42643084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001715120.1	-1	model	p.D99N	0.997	97	0%	74	37.8%	0	-	-	-	-	NULL
SLC14A2	8170	genome.wustl.edu	37	18	43247924	43247924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007163.3	+1	validated	p.A615V	1.000	258	0%	228	32.9%	0	-	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	HMMPfam_UT
EPG5	57724	genome.wustl.edu	37	18	43479452	43479452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020964.2	-1	validated	p.R1576C	1.000	170	0%	163	22.7%	6	33.3%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
EPG5	57724	genome.wustl.edu	37	18	43523231	43523231	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020964.2	-1	validated	p.I613M	1.000	384	0%	382	36.9%	0	-	probably_damaging(0.955)	tolerated(0.09)	deleterious(0.695)	NULL
HAUS1	115106	genome.wustl.edu	37	18	43685319	43685319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138443.3	+1	validated	p.E64*	0.995	80	0%	86	32.6%	30	13.3%	-	-	-	NULL
HAUS1	115106	genome.wustl.edu	37	18	43685368	43685368	+	RNA	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_026978.1	+1	validated	NULL	0.000	66	0%	64	29.7%	0	-	-	-	-	-
HAUS1	115106	genome.wustl.edu	37	18	43702477	43702477	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138443.3	+1	validated	p.K174T	1.000	168	0%	118	23.7%	39	5.1%	possibly_damaging(0.889)	tolerated(0.14)	deleterious(0.599)	NULL
PIAS2	9063	genome.wustl.edu	37	18	44424037	44424037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004671.2	-1	validated	p.R341W	1.000	269	0%	198	27.8%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RING/U-box
PIAS2	9063	genome.wustl.edu	37	18	44470803	44470803	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004671.2	-1	validated	p.S80*	0.126	213	0%	229	13.5%	6	50%	-	-	-	NULL
KATNAL2	83473	genome.wustl.edu	37	18	44584631	44584631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031303.2	+1	validated	p.L48I	1.000	146	0%	106	35.8%	0	-	probably_damaging(0.992)	tolerated(0.54)	neutral(0.455)	NULL
KATNAL2	83473	genome.wustl.edu	37	18	44627364	44627364	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031303.2	+1	validated	p.F463	0.947	276	0%	232	27.2%	2	50%	-	-	-	NULL
ZBTB7C	201501	genome.wustl.edu	37	18	45567285	45567285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039360.1	-1	validated	p.A65V	0.757	31	0%	41	26.8%	0	-	benign(0.058)	tolerated(0.37)	neutral(0.022)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
CTIF	9811	genome.wustl.edu	37	18	46284759	46284759	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142397.1	+1	validated	p.R352*	1.000	361	0%	276	32.2%	4	0%	-	-	-	NULL
DYM	54808	genome.wustl.edu	37	18	46906113	46906113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017653.3	-1	reviewed	p.R70Q	1.000	246	0%	228	28.1%	9	66.6%	probably_damaging(0.997)	tolerated(0.58)	deleterious(0.471)	HMMPfam_Dymeclin
SMAD4	4089	genome.wustl.edu	37	18	48593532	48593532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005359.5	+1	reviewed	p.K428T	1.000	141	0%	124	29.8%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
DCC	1630	genome.wustl.edu	37	18	50450145	50450145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005215.3	+1	reviewed	p.D256Y	1.000	118	0%	93	23.7%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DCC	1630	genome.wustl.edu	37	18	50734120	50734120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005215.3	+1	reviewed	p.F598L	0.999	139	0%	124	25%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TCF4	6925	genome.wustl.edu	37	18	52895478	52895478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083962.1	-1	reviewed	p.S665L	0.976	107	0%	89	28.1%	16	0%	benign(0.121)	tolerated(0.06)	neutral(0.332)	NULL
TCF4	6925	genome.wustl.edu	37	18	52924580	52924580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083962.1	-1	reviewed	p.S371L	1.000	250	0%	247	27.5%	16	0%	possibly_damaging(0.837)	tolerated(0.84)	neutral(0.320)	NULL
TCF4	6925	genome.wustl.edu	37	18	53017619	53017619	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083962.1	-1	reviewed	p.R174*	1.000	151	0%	128	35.9%	7	0%	-	-	-	NULL
TXNL1	9352	genome.wustl.edu	37	18	54281690	54281690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004786.2	-1	validated	p.R234C	1.000	71	0%	84	28.6%	309	43.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1000
WDR7	23335	genome.wustl.edu	37	18	54606619	54606619	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015285.2	+1	reviewed	p.I1353	1.000	151	0%	110	35.5%	5	20%	-	-	-	NULL
ST8SIA3	51046	genome.wustl.edu	37	18	55024396	55024396	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015879.2	+1	validated	p.F185	1.000	126	0%	121	35.5%	0	-	-	-	-	HMMPfam_Glyco_transf_29
MALT1	10892	genome.wustl.edu	37	18	56367802	56367802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006785.2	+1	reviewed	p.D210N	0.999	219	0%	255	26.7%	12	25%	benign(0.002)	tolerated(0.53)	neutral(0.007)	superfamily_Immunoglobulin
ZNF532	55205	genome.wustl.edu	37	18	56620896	56620896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018181.4	+1	validated	p.K1005N	1.000	146	0%	174	27.6%	12	41.6%	probably_damaging(0.96)	tolerated(0.18)	neutral(0.459)	NULL
RAX	30062	genome.wustl.edu	37	18	56939653	56939653	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013435.2	-1	reviewed	p.P161	0.943	69	0%	36	30.6%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
CPLX4	339302	genome.wustl.edu	37	18	56964048	56964048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181654.3	-1	reviewed	p.S122Y	1.000	121	0%	141	31.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CDH20	28316	genome.wustl.edu	37	18	59157987	59157987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031891.2	+1	reviewed	p.F67L	1.000	383	0.3%	312	22.8%	0	-	possibly_damaging(0.726)	deleterious(0.02)	deleterious(0.647)	HMMPfam_Cadherin,superfamily_Cadherin
CDH20	28316	genome.wustl.edu	37	18	59221637	59221637	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031891.2	+1	reviewed	p.I705	0.925	32	0%	29	55.2%	0	-	-	-	-	HMMPfam_Cadherin_C
PIGN	23556	genome.wustl.edu	37	18	59774081	59774081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012327.5	-1	reviewed	p.A570T	0.966	62	0%	51	17.6%	14	7.1%	benign(0.002)	tolerated(0.19)	neutral(0.050)	HMMPfam_PigN
PIGN	23556	genome.wustl.edu	37	18	59821873	59821873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012327.5	-1	reviewed	p.D152Y	1.000	285	0%	243	27.2%	6	66.6%	benign(0.154)	deleterious(0.01)	neutral(0.419)	superfamily_Alkaline_phosphatase_core
KIAA1468	57614	genome.wustl.edu	37	18	59941249	59941249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020854.3	+1	validated	p.D933Y	1.000	218	0%	191	27.7%	11	54.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
PHLPP1	23239	genome.wustl.edu	37	18	60506128	60506128	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194449.2	+1	validated	p.R117*	1.000	244	0.4%	172	25%	2	0%	-	-	-	HMMPfam_PH,superfamily_L domain-like
PHLPP1	23239	genome.wustl.edu	37	18	60563045	60563045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194449.2	+1	validated	p.L237I	1.000	565	0%	458	27.5%	2	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SERPINB4	6318	genome.wustl.edu	37	18	61306534	61306534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002974.2	-1	validated	p.S218Y	0.000	205	0%	174	13.8%	0	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB4	6318	genome.wustl.edu	37	18	61306941	61306941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002974.2	-1	validated	p.I180T	0.998	310	0%	239	28%	0	-	possibly_damaging(0.783)	deleterious(0.02)	deleterious(0.676)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB11	89778	genome.wustl.edu	37	18	61390517	61390517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080475.2	+1	validated	p.A355T	0.000	301	0%	303	32.7%	0	-	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CDH19	28513	genome.wustl.edu	37	18	64172503	64172503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021153.2	-1	reviewed	p.R622I	0.287	242	0%	198	33.3%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	HMMPfam_Cadherin_C
CDH19	28513	genome.wustl.edu	37	18	64202327	64202327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021153.2	-1	reviewed	p.S411N	0.986	82	0%	59	27.1%	0	-	possibly_damaging(0.455)	tolerated(0.37)	neutral(0.168)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSEL	92126	genome.wustl.edu	37	18	65178589	65178589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032160.2	-1	validated	p.K1096T	0.992	162	0%	125	27.2%	3	0%	benign(0)	tolerated(0.14)	neutral(0.249)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DSEL	92126	genome.wustl.edu	37	18	65178777	65178777	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032160.2	-1	validated	p.S1033	0.001	201	0%	164	25.6%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DSEL	92126	genome.wustl.edu	37	18	65181252	65181252	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032160.2	-1	validated	p.E208D	0.990	127	0%	112	29.5%	0	-	benign(0.051)	tolerated(0.31)	neutral(0.030)	NULL
DSEL	92126	genome.wustl.edu	37	18	65181320	65181320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032160.2	-1	validated	p.G186C	1.000	121	0%	108	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DSEL	92126	genome.wustl.edu	37	18	65181610	65181610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032160.2	-1	validated	p.S89Y	1.000	101	0%	97	30.9%	0	-	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
CD226	10666	genome.wustl.edu	37	18	67562970	67562970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006566.2	-1	reviewed	p.E232K	0.009	70	0%	58	37.9%	1	0%	benign(0.01)	tolerated(0.8)	neutral(0.001)	HMMPfam_V-set,superfamily_SSF48726
CBLN2	147381	genome.wustl.edu	37	18	70209181	70209181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182511.3	-1	validated	p.P72L	0.998	10	0%	14	50%	0	-	possibly_damaging(0.712)	deleterious(0.01)	deleterious(0.663)	NULL
NETO1	81832	genome.wustl.edu	37	18	70451127	70451127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138966.2	-1	reviewed	p.F218L	1.000	206	0%	179	27.4%	0	-	benign(0.14)	deleterious(0.02)	neutral(0.395)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
FBXO15	201456	genome.wustl.edu	37	18	71740862	71740862	+	Missense_Mutation	SNP	C	C	T	rs191921902	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142958.1	-1	reviewed	p.S456N	0.003	645	0.5%	725	36.7%	1	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72347213	72347213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017757.2	+1	reviewed	p.R1413Q	0.142	104	0%	117	30.8%	2	50%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_C2H2 and C2HC zinc fingers
C18orf62	284274	genome.wustl.edu	37	18	73130845	73130845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037331.2	-1	provisional	p.F52L	0.001	162	0%	122	22.1%	0	-	benign(0.009)	-	-	NULL
ZNF516	9658	genome.wustl.edu	37	18	74083482	74083482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000443185	-1	known	p.E1102K	0.003	12	0%	15	33.3%	4	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF236	7776	genome.wustl.edu	37	18	74635035	74635035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007345.3	+1	validated	p.R1187Q	0.904	100	0%	120	32.5%	1	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ATP9B	374868	genome.wustl.edu	37	18	76870408	76870408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198531.3	+1	validated	p.R116H	1.000	214	0%	176	29.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP9B	374868	genome.wustl.edu	37	18	76966965	76966965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198531.3	+1	validated	p.S328N	1.000	41	0%	29	34.5%	1	0%	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
ATP9B	374868	genome.wustl.edu	37	18	77108158	77108158	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198531.3	+1	validated	p.F955	0.966	107	0%	88	33%	15	26.6%	-	-	-	NULL
NFATC1	4772	genome.wustl.edu	37	18	77170636	77170636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172387.1	+1	reviewed	p.E108K	1.000	25	0%	27	37%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTBP1	5725	genome.wustl.edu	37	19	807901	807901	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002819.4	+1	reviewed	p.F384	1.000	84	0%	70	41.4%	285	36.8%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
AZU1	566	genome.wustl.edu	37	19	830888	830888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001700.3	+1	reviewed	p.R181C	0.003	19	0%	18	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ARID3A	1820	genome.wustl.edu	37	19	964870	964870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005224.2	+1	reviewed	p.R330W	1.000	23	0%	21	38.1%	23	21.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ARID,HMMSmart_BRIGHT,superfamily_ARID
POLR2E	5434	genome.wustl.edu	37	19	1090924	1090924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002695.3	-1	reviewed	p.N138D	1.000	12	0%	12	58.3%	294	43.8%	possibly_damaging(0.924)	tolerated(0.07)	deleterious(0.692)	HMMPfam_RNA_pol_Rpb5_C,superfamily_RNA_pol_Rpb5_N
MUM1	84939	genome.wustl.edu	37	19	1360170	1360170	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032853.3	+1	validated	p.E85*	0.997	81	0%	60	30%	3	66.6%	-	-	-	NULL
DOT1L	84444	genome.wustl.edu	37	19	2180744	2180744	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032482.2	+1	validated	p.I38	1.000	17	0%	23	30.4%	6	50%	-	-	-	superfamily_SSF53335
LMNB2	84823	genome.wustl.edu	37	19	2444468	2444468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032737.2	-1	reviewed	p.R92Q	0.991	13	0%	18	50%	18	33.3%	possibly_damaging(0.732)	deleterious(0.04)	deleterious(0.617)	HMMPfam_Filament
ZNF555	148254	genome.wustl.edu	37	19	2853875	2853875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152791.4	+1	validated	p.F604L	0.003	131	0%	135	25.2%	1	100%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
ZNF556	80032	genome.wustl.edu	37	19	2877963	2877963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024967.1	+1	provisional	p.T336M	0.863	55	0%	65	24.6%	0	-	benign(0.349)	tolerated(0.08)	neutral(0.410)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF57	126295	genome.wustl.edu	37	19	2916112	2916112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173480.2	+1	validated	p.S56Y	0.142	165	0%	154	31.8%	6	83.3%	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMSmart_SM00349
ZNF57	126295	genome.wustl.edu	37	19	2917690	2917690	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173480.2	+1	validated	p.T357	0.001	139	0%	133	23.3%	8	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF57	126295	genome.wustl.edu	37	19	2917857	2917857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173480.2	+1	validated	p.T413M	0.001	158	0.6%	180	26.1%	7	28.5%	possibly_damaging(0.905)	tolerated(0.1)	deleterious(0.646)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF77	58492	genome.wustl.edu	37	19	2934669	2934669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021217.2	-1	validated	p.E152D	0.003	250	0%	230	28.7%	3	33.3%	benign(0.008)	tolerated(0.58)	neutral(0.005)	superfamily_SSF57667
TLE6	79816	genome.wustl.edu	37	19	2989551	2989551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143986.1	+1	validated	p.R338C	1.000	30	0%	42	45.2%	3	33.3%	possibly_damaging(0.606)	tolerated(0.06)	deleterious(0.532)	HMMSmart_SM00320,superfamily_WD40 repeat-like
GNA15	2769	genome.wustl.edu	37	19	3155833	3155833	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002068.2	+1	validated	p.V209	0.925	28	0%	31	29%	7	0%	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
MATK	4145	genome.wustl.edu	37	19	3778366	3778366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002378.3	-1	reviewed	p.E448K	0.999	8	0.000	8	0.625	9	22.2%	possibly_damaging(0.454)	tolerated(0.2)	neutral(0.198)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
MATK	4145	genome.wustl.edu	37	19	3779382	3779382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002378.3	-1	reviewed	p.F333C	1.000	16	0%	12	50%	4	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
MATK	4145	genome.wustl.edu	37	19	3789290	3789290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002378.3	-1	reviewed	p.R19H	0.001	52	0%	45	24.4%	0	-	unknown(0)	deleterious(0.01)	-	NULL
EEF2	1938	genome.wustl.edu	37	19	3980633	3980633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001961.3	-1	reviewed	p.R409W	0.987	41	0%	35	22.9%	1302	45.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins
ANKRD24	170961	genome.wustl.edu	37	19	4210268	4210268	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133475.1	+1	provisional	p.R320*	0.006	34	0%	19	47.4%	1	100%	-	-	-	NULL
ANKRD24	170961	genome.wustl.edu	37	19	4216922	4216922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133475.1	+1	provisional	p.A589T	0.004	44	0%	41	34.1%	0	-	probably_damaging(0.98)	tolerated(0.16)	deleterious(0.483)	NULL
SH3GL1	6455	genome.wustl.edu	37	19	4366974	4366974	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003025.2	-1	provisional	p.V21	0.735	147	0%	93	18.3%	32	15.6%	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
DPP9	91039	genome.wustl.edu	37	19	4702054	4702054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139159.4	-1	reviewed	p.R333W	1.000	52	0%	32	25%	20	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DPPIV_N,superfamily_SSF82171
SAFB2	9667	genome.wustl.edu	37	19	5590386	5590386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014649.2	-1	validated	p.P810S	0.159	18	0%	22	22.7%	14	28.5%	unknown(0)	tolerated(0.09)	-	superfamily_SSF54928
SAFB2	9667	genome.wustl.edu	37	19	5604658	5604658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014649.2	-1	validated	p.E499K	0.994	84	0%	78	26.9%	15	26.6%	benign(0.176)	tolerated(0.49)	neutral(0.027)	superfamily_SSF54928
SAFB	6294	genome.wustl.edu	37	19	5657299	5657299	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002967.2	+1	reviewed	p.S601	0.001	55	0%	26	26.9%	73	20.5%	-	-	-	superfamily_SSF54928
LONP1	9361	genome.wustl.edu	37	19	5713162	5713162	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004793.2	-1	reviewed	p.I207	0.992	38	0%	39	15.4%	64	29.6%	-	-	-	HMMPfam_LON,HMMSmart_LON
ACSBG2	81616	genome.wustl.edu	37	19	6183087	6183087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030924.3	+1	validated	p.T376A	0.001	172	0%	167	32.9%	0	-	benign(0.001)	tolerated(0.87)	neutral(0.001)	HMMPfam_AMP-binding,superfamily_SSF56801
C3	718	genome.wustl.edu	37	19	6692943	6692943	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000064.2	-1	reviewed	p.E1128*	1.000	112	0%	109	27.5%	30	6.6%	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
C3	718	genome.wustl.edu	37	19	6702214	6702214	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000064.2	-1	reviewed	p.T788	0.005	116	0%	69	23.2%	15	46.6%	-	-	-	HMMPfam_A2M
C3	718	genome.wustl.edu	37	19	6702535	6702535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000064.2	-1	reviewed	p.F767L	0.998	155	0%	123	32.5%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C3	718	genome.wustl.edu	37	19	6711019	6711019	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000064.2	-1	reviewed	p.K486	0.076	77	0%	86	22.1%	11	0%	-	-	-	HMMPfam_A2M_N_2
C3	718	genome.wustl.edu	37	19	6712412	6712412	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000064.2	-1	reviewed	p.F375	0.597	47	0%	52	25%	14	64.2%	-	-	-	NULL
GPR108	56927	genome.wustl.edu	37	19	6734315	6734315	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080452.1	-1	provisional	p.V126	0.999	29	0%	32	31.2%	40	35%	-	-	-	NULL
TRIP10	9322	genome.wustl.edu	37	19	6743845	6743845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004240.2	+1	validated	p.D214N	1.000	154	0%	149	28.2%	92	34.7%	benign(0.012)	tolerated(1)	neutral(0.001)	NULL
VAV1	7409	genome.wustl.edu	37	19	6825377	6825377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005428.2	+1	reviewed	p.A263T	0.467	73	0%	48	18.8%	1	0%	possibly_damaging(0.727)	tolerated(0.44)	neutral(0.277)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
EMR1	2015	genome.wustl.edu	37	19	6906538	6906538	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000450315	+1	known	e9+2	0.206	209	0%	188	29.8%	0	-	-	-	-	-
ZNF358	140467	genome.wustl.edu	37	19	7584331	7584331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018083.4	+1	validated	p.S68L	0.090	93	0%	113	31.9%	82	42.6%	benign(0.141)	deleterious(0)	neutral(0.457)	NULL
CLEC4G	339390	genome.wustl.edu	37	19	7794755	7794755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198492.3	-1	validated	p.G232D	0.000	69	0%	69	29%	0	-	possibly_damaging(0.877)	tolerated(0.13)	deleterious(0.594)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC4M	10332	genome.wustl.edu	37	19	7831075	7831075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014257.4	+1	reviewed	p.D256N	0.004	207	0%	241	29%	0	-	benign(0.087)	tolerated(0.1)	neutral(0.293)	NULL
CLEC4M	10332	genome.wustl.edu	37	19	7833812	7833812	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014257.4	+1	reviewed	p.R380*	0.000	258	0%	240	29.2%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
FBN3	84467	genome.wustl.edu	37	19	8173113	8173113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032447.3	-1	reviewed	p.R1543I	1.000	180	0%	135	30.4%	0	-	probably_damaging(0.956)	tolerated(0.07)	deleterious(0.719)	HMMPfam_TB,superfamily_TB module/8-cys domain
FBN3	84467	genome.wustl.edu	37	19	8174205	8174205	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032447.3	-1	reviewed	p.A1508	0.049	206	0%	148	15.5%	0	-	-	-	-	HMMPfam_TB,superfamily_TB module/8-cys domain
FBN3	84467	genome.wustl.edu	37	19	8174551	8174551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032447.3	-1	reviewed	p.D1474N	0.999	247	0%	181	29.3%	0	-	possibly_damaging(0.919)	tolerated(0.37)	neutral(0.389)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
MYO1F	4542	genome.wustl.edu	37	19	8595422	8595422	+	Silent	SNP	G	G	A	rs192805660	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012335.3	-1	validated	p.F693	1.000	227	0%	343	16.3%	2	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1F	4542	genome.wustl.edu	37	19	8612974	8612974	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012335.3	-1	validated	p.F405	1.000	154	0.6%	156	22.4%	4	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1F	4542	genome.wustl.edu	37	19	8613157	8613157	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012335.3	-1	validated	p.I382	0.918	82	0%	93	39.8%	6	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF558	148156	genome.wustl.edu	37	19	8922567	8922567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144693.1	-1	provisional	p.R200I	1.000	163	0%	131	29%	4	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MBD3L1	85509	genome.wustl.edu	37	19	8953665	8953665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145208.2	+1	reviewed	p.S104Y	0.000	250	0%	251	29.1%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
MUC16	94025	genome.wustl.edu	37	19	9009648	9009648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024690.2	-1	validated	p.E13026D	0.312	1081	0%	1254	29.3%	9	66.6%	probably_damaging(0.994)	-	-	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9048972	9048972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024690.2	-1	validated	p.A10887T	0.000	860	0%	1000	28.7%	5	40%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9056732	9056732	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024690.2	-1	validated	p.T10238	0.000	101	0%	96	32.3%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9058343	9058343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024690.2	-1	validated	p.E9701D	0.000	116	0.9%	151	31.8%	1	100%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9060111	9060111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024690.2	-1	validated	p.Q9112R	0.003	215	0%	312	31.7%	0	-	unknown(0)	-	-	NULL
OR1M1	125963	genome.wustl.edu	37	19	9204625	9204625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004456.1	+1	provisional	p.K235N	0.029	238	0%	309	31.1%	0	-	possibly_damaging(0.868)	tolerated(0.11)	deleterious(0.609)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7G2	390882	genome.wustl.edu	37	19	9213399	9213399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005193.1	-1	provisional	p.I195S	0.078	183	0%	223	23.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF699	374879	genome.wustl.edu	37	19	9406273	9406273	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198535.1	-1	provisional	p.R603*	0.000	198	0%	166	11.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF559	84527	genome.wustl.edu	37	19	9452763	9452763	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032497.1	+1	provisional	p.P212	0.000	293	0%	247	29.1%	1	100%	-	-	-	superfamily_SSF57667
ZNF559	84527	genome.wustl.edu	37	19	9453161	9453161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032497.1	+1	provisional	p.R345Q	0.040	190	0%	170	26.5%	3	33.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577814	9577814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152476.2	-1	validated	p.K603N	0.000	259	0%	222	35.1%	0	-	possibly_damaging(0.598)	tolerated(0.64)	neutral(0.210)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF562	54811	genome.wustl.edu	37	19	9763950	9763950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130031.1	-1	validated	p.T319M	0.005	466	0%	427	30%	5	20%	benign(0.082)	tolerated(0.08)	neutral(0.306)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FBXL12	54850	genome.wustl.edu	37	19	9922034	9922034	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017703.1	-1	provisional	p.T173	0.000	20	0%	24	16.7%	17	23.5%	-	-	-	superfamily_RNI-like
COL5A3	50509	genome.wustl.edu	37	19	10071203	10071203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015719.3	-1	reviewed	p.E1708K	0.881	200	0%	262	40.8%	46	8.6%	unknown(0)	deleterious(0.01)	-	HMMPfam_COLFI,HMMSmart_SM00038
RDH8	50700	genome.wustl.edu	37	19	10127868	10127868	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015725.2	+1	validated	p.I80S	0.916	23	0%	42	28.6%	0	-	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_adh_short,superfamily_NAD(P)-bd
DNMT1	1786	genome.wustl.edu	37	19	10291528	10291528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130823.1	-1	reviewed	p.E51K	1.000	60	0%	71	26.8%	5	20%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_DMAP_binding
ICAM5	7087	genome.wustl.edu	37	19	10402899	10402899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003259.3	+1	reviewed	p.A288T	0.019	29	0%	18	50%	0	-	benign(0.099)	tolerated(0.09)	neutral(0.304)	superfamily_Immunoglobulin
DNM2	1785	genome.wustl.edu	37	19	10904485	10904485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005360.1	+1	reviewed	p.R361Q	0.991	110	0%	101	29.7%	60	38.3%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_Dynamin_M
DNM2	1785	genome.wustl.edu	37	19	10912967	10912967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005360.1	+1	reviewed	p.L476F	1.000	63	0%	48	27.1%	95	42.1%	possibly_damaging(0.694)	deleterious(0.05)	deleterious(0.595)	HMMPfam_Dynamin_M
RGL3	57139	genome.wustl.edu	37	19	11529942	11529942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001035223.2	-1	validated	p.A5T	0.018	13	0%	11	54.5%	15	46.6%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	NULL
ZNF627	199692	genome.wustl.edu	37	19	11728046	11728046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145295.3	+1	validated	p.R243M	0.606	47	0%	62	48.4%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF823	55552	genome.wustl.edu	37	19	11836080	11836080	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080493.2	-1	validated	p.G22	0.662	158	0%	112	27.7%	1	0%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF441	126068	genome.wustl.edu	37	19	11890938	11890938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152355.2	+1	validated	p.V100A	0.006	125	0%	120	15%	0	-	benign(0.186)	tolerated(0.47)	neutral(0.029)	NULL
ZNF441	126068	genome.wustl.edu	37	19	11891121	11891121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152355.2	+1	validated	p.R161I	0.000	144	0%	141	32.6%	0	-	possibly_damaging(0.949)	tolerated(0.16)	neutral(0.453)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF441	126068	genome.wustl.edu	37	19	11891152	11891152	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152355.2	+1	validated	p.C171	0.009	144	0%	145	31%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF441	126068	genome.wustl.edu	37	19	11891955	11891955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152355.2	+1	validated	p.R439I	0.475	148	0%	175	32.6%	0	-	possibly_damaging(0.905)	tolerated(0.06)	deleterious(0.682)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF491	126069	genome.wustl.edu	37	19	11916863	11916863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152356.3	+1	validated	p.P32H	0.154	83	0%	87	28.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZNF491	126069	genome.wustl.edu	37	19	11917976	11917976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152356.3	+1	validated	p.R403K	0.001	103	0%	95	27.4%	0	-	probably_damaging(0.955)	tolerated(0.14)	deleterious(0.648)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF440	126070	genome.wustl.edu	37	19	11943170	11943170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152357.2	+1	validated	p.E393D	0.999	246	0%	274	26.3%	2	0%	benign(0.013)	tolerated(0.07)	neutral(0.320)	superfamily_SSF57667
ZNF440	126070	genome.wustl.edu	37	19	11943544	11943544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152357.2	+1	validated	p.S518N	0.000	254	0%	245	26.9%	6	83.3%	possibly_damaging(0.767)	deleterious(0.03)	deleterious(0.649)	NULL
ZNF439	90594	genome.wustl.edu	37	19	11978669	11978669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152262.2	+1	provisional	p.R262I	0.814	284	0%	260	29.2%	0	-	benign(0.085)	tolerated(0.1)	neutral(0.292)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF763	284390	genome.wustl.edu	37	19	12089398	12089398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012753.1	+1	validated	p.R223I	0.919	195	0%	242	30.2%	0	-	possibly_damaging(0.893)	tolerated(0.06)	deleterious(0.674)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF136	7695	genome.wustl.edu	37	19	12298080	12298080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003437.2	+1	validated	p.R296Q	0.000	176	0%	171	11.7%	2	0%	possibly_damaging(0.601)	tolerated(0.58)	neutral(0.213)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287841	100287841	genome.wustl.edu	37	19	12358618	12358618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343641.1	-1	model	p.E366A	0.011	32	0%	29	37.9%	0	-	possibly_damaging(0.857)	tolerated(0.06)	deleterious(0.653)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF44	51710	genome.wustl.edu	37	19	12383928	12383928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016264.3	-1	validated	p.R381Q	0.000	220	0.5%	212	34%	2	50%	probably_damaging(0.977)	tolerated(0.52)	neutral(0.427)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF563	147837	genome.wustl.edu	37	19	12429697	12429697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145276.2	-1	validated	p.R381Q	0.000	464	0.2%	447	32%	2	50%	probably_damaging(1)	tolerated(0.56)	deleterious(0.506)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF442	79973	genome.wustl.edu	37	19	12461125	12461125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030824.2	-1	validated	p.R425M	0.995	424	0%	428	31.1%	1	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF442	79973	genome.wustl.edu	37	19	12461293	12461293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030824.2	-1	validated	p.R369I	0.940	665	0%	583	33.1%	4	25%	possibly_damaging(0.938)	deleterious(0.04)	deleterious(0.732)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF442	79973	genome.wustl.edu	37	19	12461809	12461809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030824.2	-1	validated	p.R197Q	0.000	471	0.2%	434	12.7%	0	-	benign(0.426)	tolerated(0.58)	neutral(0.143)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF799	90576	genome.wustl.edu	37	19	12501388	12501388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080821.1	-1	validated	p.K608N	0.095	560	0%	529	26.3%	4	50%	possibly_damaging(0.772)	deleterious(0.02)	deleterious(0.670)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF799	90576	genome.wustl.edu	37	19	12501557	12501557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080821.1	-1	validated	p.R552I	0.093	418	0%	389	31.1%	8	50%	benign(0.294)	deleterious(0.03)	neutral(0.456)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575333	12575333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152601.3	-1	validated	p.R468I	0.000	482	0%	393	32.6%	0	-	possibly_damaging(0.894)	tolerated(0.2)	neutral(0.401)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576257	12576257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152601.3	-1	validated	p.R160I	0.345	193	0%	127	28.3%	0	-	possibly_damaging(0.831)	tolerated(0.08)	deleterious(0.616)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12637754	12637754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144976.3	-1	validated	p.D390N	1.000	377	0%	374	31.6%	2	0%	unknown(0)	deleterious(0.01)	-	superfamily_C2H2 and C2HC zinc fingers
ZNF490	57474	genome.wustl.edu	37	19	12692248	12692248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020714.2	-1	validated	p.R214I	0.050	258	0%	339	33.6%	0	-	possibly_damaging(0.789)	tolerated(0.06)	deleterious(0.619)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MAN2B1	4125	genome.wustl.edu	37	19	12760965	12760965	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000528.3	-1	reviewed	p.G706	0.774	167	0%	161	27.3%	72	25%	-	-	-	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
MAN2B1	4125	genome.wustl.edu	37	19	12763017	12763017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000528.3	-1	reviewed	p.Q666K	0.000	134	0%	160	30%	88	27.2%	benign(0)	tolerated(0.75)	neutral(0.002)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
DHPS	1725	genome.wustl.edu	37	19	12792409	12792409	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001930.2	-1	reviewed	p.N58Y	1.000	56	0%	37	27%	78	34.6%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_DS,superfamily_DHS-like NAD/FAD-binding domain
BEST2	54831	genome.wustl.edu	37	19	12864107	12864107	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017682.2	+1	reviewed	p.F62	0.967	271	0%	258	29.8%	0	-	-	-	-	HMMPfam_Bestrophin
CALR	811	genome.wustl.edu	37	19	13051640	13051640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004343.3	+1	reviewed	p.S300Y	1.000	88	0%	92	33.7%	1626	42.1%	possibly_damaging(0.722)	deleterious(0.02)	deleterious(0.645)	HMMPfam_Calreticulin
C19orf53	28974	genome.wustl.edu	37	19	13885490	13885490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014047.2	+1	validated	p.A41V	1.000	74	0%	77	28.6%	340	46.1%	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_DUF2462
C19orf57	79173	genome.wustl.edu	37	19	14000019	14000019	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024323.3	-1	predicted	p.F550	0.000	21	0%	21	57.1%	2	0%	-	-	-	NULL
C19orf57	79173	genome.wustl.edu	37	19	14015680	14015680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024323.3	-1	predicted	p.T9I	0.206	111	0%	97	27.8%	0	-	possibly_damaging(0.901)	deleterious(0.03)	deleterious(0.722)	NULL
CD97	976	genome.wustl.edu	37	19	14517967	14517967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_078481.2	+1	reviewed	p.T768A	0.002	55	0%	65	32.3%	111	35.1%	benign(0.004)	tolerated(1)	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
EMR2	30817	genome.wustl.edu	37	19	14877057	14877057	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013447.2	-1	reviewed	p.T208	0.012	44	0%	59	28.8%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
OR7A5	26659	genome.wustl.edu	37	19	14938443	14938443	+	Missense_Mutation	SNP	G	G	A	rs143093089	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017506.1	-1	validated	p.A204V	0.000	240	0%	341	32.8%	0	-	benign(0)	tolerated(0.77)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7A2P	390894	genome.wustl.edu	37	19	14974642	14974642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000304105	-1	known	p.D296Y	0.876	112	0%	162	32.7%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_Family A G protein-coupled receptor-like
OR7C2	26658	genome.wustl.edu	37	19	15052940	15052940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012377.1	+1	provisional	p.I214L	0.006	231	0%	272	33.8%	0	-	benign(0.399)	deleterious(0.02)	deleterious(0.512)	HMMPfam_7tm_1,superfamily_SSF81321
LOC100289597	100289597	genome.wustl.edu	37	19	15072861	15072861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343628.1	+1	model	p.E37K	0.999	324	0%	439	30.1%	0	-	-	-	-	NULL
CCDC105	126402	genome.wustl.edu	37	19	15131442	15131442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173482.2	+1	validated	p.P282H	0.465	58	0%	71	32.4%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
BRD4	23476	genome.wustl.edu	37	19	15349196	15349196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058243.2	-1	reviewed	p.L1361I	1.000	63	0%	62	30.6%	57	42.1%	probably_damaging(0.984)	-	-	NULL
WIZ	58525	genome.wustl.edu	37	19	15547689	15547689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021241.2	-1	validated	p.R153W	0.165	14	0.000	9	0.444	1	0%	benign(0.142)	deleterious(0)	neutral(0.457)	NULL
PGLYRP2	114770	genome.wustl.edu	37	19	15580623	15580623	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052890.3	-1	validated	p.T487	0.001	9	0.000	10	0.500	0	-	-	-	-	HMMPfam_Amidase_2,HMMSmart_SM00644,superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701
CYP4F22	126410	genome.wustl.edu	37	19	15659953	15659953	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173483.3	+1	reviewed	p.I425	1.000	192	0%	155	29%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F3	4051	genome.wustl.edu	37	19	15752390	15752390	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000896.2	+1	reviewed	p.P55	0.000	75	0%	68	38.2%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
OR10H3	26532	genome.wustl.edu	37	19	15853072	15853072	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013938.1	+1	provisional	p.I290	1.000	636	0%	563	32%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000225607	0	genome.wustl.edu	37	19	15890582	15890582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000412610	-1	known	p.R47H	0.001	109	0%	57	35.1%	0	-	-	-	-	superfamily_Cytochrome P450
ZNF861P	100302737	genome.wustl.edu	37	19	15932940	15932940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000292633	-1	known	p.G61R	0.026	23	0%	12	41.7%	0	-	-	-	-	NULL
OR10H4	126541	genome.wustl.edu	37	19	16060120	16060120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004465.1	+1	validated	p.Q101H	1.000	480	0%	446	25.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
CALR3	125972	genome.wustl.edu	37	19	16593513	16593513	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145046.3	-1	validated	p.P254	0.000	36	0%	38	28.9%	0	-	-	-	-	HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl,superfamily_Calret_calnex_P
NWD1	284434	genome.wustl.edu	37	19	16899921	16899921	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007525.2	+1	validated	p.K819Q	0.000	65	0%	113	27.4%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	HMMSmart_SM00320,superfamily_WD40 repeat-like
NWD1	284434	genome.wustl.edu	37	19	16908614	16908614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007525.2	+1	validated	p.E991K	0.629	187	1.1%	197	35.5%	2	0%	possibly_damaging(0.911)	tolerated(0.18)	neutral(0.419)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NWD1	284434	genome.wustl.edu	37	19	16925938	16925938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007525.2	+1	validated	p.R1363Q	0.998	129	0%	129	21.7%	7	0%	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	NULL
CPAMD8	27151	genome.wustl.edu	37	19	17085974	17085974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015692.2	-1	validated	p.R715Q	0.416	29	0%	33	36.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
MYO9B	4650	genome.wustl.edu	37	19	17273842	17273842	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004145.3	+1	reviewed	p.F527	0.981	23	0%	21	23.8%	8	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
USE1	55850	genome.wustl.edu	37	19	17330166	17330166	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018467.3	+1	validated	p.A189	0.021	13	0%	16	25%	69	39.1%	-	-	-	HMMPfam_Use1
USHBP1	83878	genome.wustl.edu	37	19	17373675	17373675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031941.3	-1	validated	p.P110S	0.000	62	0%	55	29.1%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ANO8	57719	genome.wustl.edu	37	19	17435963	17435963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020959.2	-1	validated	p.R965H	1.000	51	0%	40	40%	13	38.4%	unknown(0)	deleterious(0)	-	NULL
PLVAP	83483	genome.wustl.edu	37	19	17476774	17476774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031310.1	-1	provisional	p.T167M	0.001	33	0%	63	34.9%	26	0%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_PV-1
SLC27A1	376497	genome.wustl.edu	37	19	17599836	17599836	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198580.1	+1	provisional	p.G302	0.601	70	0%	54	24.1%	7	0%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
SLC27A1	376497	genome.wustl.edu	37	19	17611318	17611318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198580.1	+1	provisional	p.L450I	0.942	41	0%	42	28.6%	5	20%	possibly_damaging(0.927)	tolerated(0.12)	deleterious(0.635)	HMMPfam_AMP-binding,superfamily_SSF56801
MAST3	23031	genome.wustl.edu	37	19	18248060	18248060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015016.1	+1	validated	p.E633K	1.000	76	0%	55	47.3%	6	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FKBP8	23770	genome.wustl.edu	37	19	18643603	18643603	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012181.3	-1	reviewed	p.T342	0.974	22	0%	34	44.1%	597	40%	-	-	-	superfamily_SSF48452
DDX49	54555	genome.wustl.edu	37	19	19035708	19035708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019070.4	+1	validated	p.T316M	0.998	43	0%	36	22.2%	94	52.1%	possibly_damaging(0.525)	deleterious(0.04)	deleterious(0.526)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
HOMER3	9454	genome.wustl.edu	37	19	19042181	19042181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145722.1	-1	reviewed	p.E283K	0.326	43	0%	58	24.1%	57	42.1%	possibly_damaging(0.919)	tolerated(0.26)	neutral(0.403)	NULL
NCAN	1463	genome.wustl.edu	37	19	19359640	19359640	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004386.2	+1	validated	p.R1257*	0.995	100	0%	174	31%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
GATAD2A	54815	genome.wustl.edu	37	19	19576180	19576180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017660.3	+1	provisional	p.R9Q	1.000	109	0%	94	23.4%	9	55.5%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	NULL
ATP13A1	57130	genome.wustl.edu	37	19	19757027	19757027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020410.2	-1	validated	p.R1079W	1.000	19	0%	40	40%	107	37.3%	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	NULL
ZNF101	94039	genome.wustl.edu	37	19	19790184	19790184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033204.2	+1	provisional	p.R129Q	0.593	154	0%	189	31.7%	0	-	benign(0.411)	tolerated(0.27)	neutral(0.167)	NULL
ZNF101	94039	genome.wustl.edu	37	19	19790703	19790703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033204.2	+1	provisional	p.R302I	0.220	98	0%	139	26.6%	2	0%	benign(0.076)	tolerated(0.08)	neutral(0.305)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF101	94039	genome.wustl.edu	37	19	19790729	19790729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033204.2	+1	provisional	p.E311K	0.001	120	0%	157	32.5%	4	25%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2
ZNF14	7561	genome.wustl.edu	37	19	19823476	19823476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021030.2	-1	reviewed	p.T205I	0.037	199	0%	218	22.5%	0	-	possibly_damaging(0.55)	deleterious(0)	deleterious(0.631)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF506	440515	genome.wustl.edu	37	19	19906181	19906181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099269.2	-1	validated	p.S172Y	0.000	113	0%	110	31.8%	0	-	possibly_damaging(0.463)	tolerated(0.35)	neutral(0.172)	superfamily_SSF57667
ZNF253	56242	genome.wustl.edu	37	19	19989320	19989320	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021047.2	+1	provisional	p.E12*	0.622	319	0%	206	31.1%	4	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LOC100128975	100128975	genome.wustl.edu	37	19	20047944	20047944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001719745.1	-1	model	p.E115G	0.035	259	0%	113	31%	0	-	-	-	-	NULL
ZNF682	91120	genome.wustl.edu	37	19	20133876	20133876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033196.2	-1	validated	p.R55C	0.042	215	0%	187	23.5%	1	100%	benign(0)	tolerated(0.68)	neutral(0.002)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF90	7643	genome.wustl.edu	37	19	20228884	20228884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007138.1	+1	validated	p.K174R	0.000	121	0%	123	30.9%	0	-	possibly_damaging(0.751)	tolerated(0.05)	deleterious(0.621)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF486	90649	genome.wustl.edu	37	19	20295253	20295253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052852.2	+1	provisional	p.D40A	0.603	416	0%	386	26.7%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF486	90649	genome.wustl.edu	37	19	20308132	20308132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052852.2	+1	provisional	p.T205A	0.996	219	0%	249	32.5%	0	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	superfamily_SSF57667
ZNF626	199777	genome.wustl.edu	37	19	20808275	20808275	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001076675.2	-1	validated	p.C136	0.000	305	0%	261	28.7%	0	-	-	-	-	NULL
ZNF85	7639	genome.wustl.edu	37	19	21116860	21116860	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003429.3	+1	validated	p.E12*	0.585	385	0%	339	28.3%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF430	80264	genome.wustl.edu	37	19	21239953	21239953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025189.3	+1	validated	p.K280R	0.991	348	0%	281	32.7%	4	75%	possibly_damaging(0.783)	tolerated(0.09)	deleterious(0.589)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF714	148206	genome.wustl.edu	37	19	21300851	21300851	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000291770	+1	known	p.F461V	0.968	268	0%	288	29.5%	3	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF431	170959	genome.wustl.edu	37	19	21365838	21365838	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133473.2	+1	validated	p.F244	0.035	335	0%	366	28.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF431	170959	genome.wustl.edu	37	19	21366174	21366174	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133473.2	+1	validated	p.F356	0.000	226	0%	284	32%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF431	170959	genome.wustl.edu	37	19	21366243	21366243	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133473.2	+1	validated	p.K379N	0.994	276	0%	250	27.2%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF708	7562	genome.wustl.edu	37	19	21476330	21476330	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021269.2	-1	validated	p.E480*	0.877	226	0%	231	33.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF708	7562	genome.wustl.edu	37	19	21493328	21493328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021269.2	-1	validated	p.E35D	0.147	234	0.4%	198	32.3%	0	-	benign(0.402)	deleterious(0.02)	deleterious(0.512)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF493	284443	genome.wustl.edu	37	19	21605911	21605911	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001076678.2	+1	validated	p.Q150	0.295	307	0%	229	12.2%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF493	284443	genome.wustl.edu	37	19	21607296	21607296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001076678.2	+1	validated	p.R612Q	0.000	225	0.4%	192	62.5%	0	-	benign(0.056)	tolerated(0.45)	neutral(0.015)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF429	353088	genome.wustl.edu	37	19	21719964	21719964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001415.2	+1	provisional	p.K370T	0.000	171	0%	161	26.7%	0	-	benign(0.26)	tolerated(0.09)	neutral(0.324)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC400682	400682	genome.wustl.edu	37	19	21838700	21838700	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001726878.1	+1	model	p.F142C	0.000	124	0%	121	24.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21991162	21991162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003423.2	-1	validated	p.I559M	0.998	326	0%	332	29.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21991460	21991460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003423.2	-1	validated	p.G460V	1.000	319	0%	299	27.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992001	21992001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003423.2	-1	validated	p.R280C	0.991	222	0%	249	33.7%	0	-	benign(0.017)	deleterious(0)	neutral(0.445)	superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992055	21992055	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003423.2	-1	validated	p.E262*	0.002	198	0%	216	30.6%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	22001993	22001993	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003423.2	-1	validated	p.E12*	0.987	302	0.3%	273	27.8%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF208	7757	genome.wustl.edu	37	19	22155446	22155446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007153.3	-1	provisional	p.R697I	0.000	378	0%	282	30.5%	0	-	benign(0.006)	tolerated(0.18)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157160	22157160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007153.3	-1	provisional	p.E226K	0.130	313	0.6%	226	24.8%	0	-	benign(0.064)	tolerated(0.07)	neutral(0.323)	superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157524	22157524	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007153.3	-1	provisional	p.E104	0.005	257	0%	173	34.7%	0	-	-	-	-	NULL
ZNF257	113835	genome.wustl.edu	37	19	22270800	22270800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033468.2	+1	provisional	p.E83A	0.143	133	0%	117	30.8%	0	-	benign(0.064)	tolerated(0.07)	neutral(0.323)	NULL
ZNF257	113835	genome.wustl.edu	37	19	22271082	22271082	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000397123	+1	known	e4+2	0.000	133	0%	161	29.8%	0	-	-	-	-	-
ZNF257	113835	genome.wustl.edu	37	19	22271727	22271727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033468.2	+1	provisional	p.R392I	1.000	137	0%	174	32.2%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22496808	22496808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343636.1	+1	model	p.R64*	0.000	32	0%	44	43.2%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497663	22497663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343636.1	+1	model	p.H349N	0.997	443	0%	443	30%	0	-	benign(0.187)	deleterious(0)	neutral(0.462)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22498223	22498223	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343636.1	+1	model	p.F535	0.000	295	0%	320	35%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574322	22574322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098626.1	-1	validated	p.K572T	0.069	58	0%	85	34.1%	0	-	benign(0.416)	deleterious(0)	deleterious(0.579)	NULL
ZNF98	148198	genome.wustl.edu	37	19	22574713	22574713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098626.1	-1	validated	p.A442S	0.820	227	0%	211	42.7%	0	-	possibly_damaging(0.436)	deleterious(0.04)	deleterious(0.491)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574992	22574992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098626.1	-1	validated	p.F349L	0.977	283	0%	290	30.7%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22575070	22575070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098626.1	-1	validated	p.K323Q	0.000	353	0%	324	19.8%	0	-	possibly_damaging(0.802)	deleterious(0.02)	deleterious(0.685)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF492	57615	genome.wustl.edu	37	19	22846757	22846757	+	Nonsense_Mutation	SNP	G	G	T	rs112130958		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020855.2	+1	validated	p.E96*	0.001	119	0%	100	29%	2	0%	-	-	-	NULL
ZNF492	57615	genome.wustl.edu	37	19	22847294	22847294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020855.2	+1	validated	p.H275N	0.993	394	0%	321	19.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC646864	646864	genome.wustl.edu	37	19	23040775	23040775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001726885.1	+1	model	p.R390I	0.717	217	0%	242	31.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23040930	23040930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001726885.1	+1	model	p.T442A	0.074	211	0%	205	31.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23159063	23159063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001726961.1	-1	model	p.K359T	0.976	320	0%	298	32.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23159480	23159480	+	Missense_Mutation	SNP	C	C	A	rs144353074	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001726961.1	-1	model	p.R220I	0.988	245	0.8%	211	34.6%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23171218	23171218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001726961.1	-1	model	p.F13L	0.485	360	0%	230	26.5%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF91	7644	genome.wustl.edu	37	19	23543076	23543076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003430.2	-1	validated	p.R902I	0.101	242	0%	224	35.7%	4	25%	benign(0.378)	tolerated(0.17)	neutral(0.179)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23543496	23543496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003430.2	-1	validated	p.R762I	0.691	277	0%	275	30.2%	1	0%	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23543607	23543607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003430.2	-1	validated	p.R725Q	0.000	271	0%	253	26.5%	1	0%	possibly_damaging(0.628)	tolerated(0.35)	neutral(0.239)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23543691	23543691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003430.2	-1	validated	p.R697Q	0.000	387	0%	336	12.8%	1	0%	unknown(0)	tolerated(0.35)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23544828	23544828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003430.2	-1	validated	p.G318E	0.833	437	0.2%	382	23.3%	0	-	possibly_damaging(0.788)	tolerated(0.11)	deleterious(0.567)	superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23836068	23836068	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138330.2	-1	validated	p.K556T	0.946	157	0%	157	37.6%	5	20%	benign(0.245)	tolerated(0.08)	neutral(0.325)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23837500	23837500	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138330.2	-1	validated	p.S79A	0.250	181	0%	178	25.8%	0	-	probably_damaging(0.99)	tolerated(0.33)	neutral(0.466)	NULL
ENSG00000104777	0	genome.wustl.edu	37	19	24102081	24102081	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000300996	-1	known	NULL	0.001	162	0%	133	23.3%	0	-	-	-	-	-
ZNF726	730087	genome.wustl.edu	37	19	24116149	24116149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000322487	+1	known	p.N411D	0.001	184	0%	142	29.6%	0	-	benign(0.226)	tolerated(0.27)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24309339	24309339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203282.2	+1	validated	p.K179N	1.000	374	0%	370	28.9%	6	33.3%	benign(0.175)	tolerated(0.17)	neutral(0.075)	superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24310499	24310499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203282.2	+1	validated	p.R566I	0.968	324	0.3%	298	26.2%	8	75%	benign(0.079)	tolerated(0.25)	neutral(0.042)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
URI1	8725	genome.wustl.edu	37	19	30503408	30503408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003796.2	+1	reviewed	p.K465N	0.030	261	0%	162	35.2%	43	44.1%	benign(0.086)	deleterious(0.02)	neutral(0.390)	NULL
URI1	8725	genome.wustl.edu	37	19	30505891	30505891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003796.2	+1	reviewed	p.R508Q	0.998	757	0.1%	452	26.1%	22	40.9%	benign(0.144)	deleterious(0.01)	neutral(0.418)	NULL
ZNF536	9745	genome.wustl.edu	37	19	30934886	30934886	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014717.1	+1	provisional	p.F139	1.000	62	0%	39	15.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF536	9745	genome.wustl.edu	37	19	31040323	31040323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014717.1	+1	provisional	p.S1266L	1.000	52	0%	126	78.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31769119	31769119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020856.2	-1	validated	p.E527G	1.000	277	0%	212	34%	2	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31769926	31769926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020856.2	-1	validated	p.R258H	1.000	370	0%	302	31.5%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
DPY19L3	147991	genome.wustl.edu	37	19	32954342	32954342	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207325.2	+1	validated	p.Y465D	1.000	213	0%	172	25.6%	3	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_DUF2211
ANKRD27	84079	genome.wustl.edu	37	19	33135287	33135287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032139.2	-1	validated	p.A157T	0.743	193	0%	207	32.9%	6	50%	benign(0.001)	tolerated(0.6)	neutral(0.004)	superfamily_SSF109993
SLC7A9	11136	genome.wustl.edu	37	19	33324115	33324115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001126335.1	-1	reviewed	p.G447S	1.000	228	0%	193	16.1%	0	-	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	HMMPfam_AA_permease
SLC7A9	11136	genome.wustl.edu	37	19	33350776	33350776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001126335.1	-1	reviewed	p.E282K	1.000	38	0%	26	46.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_AA_permease
CEP89	84902	genome.wustl.edu	37	19	33390846	33390846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032816.3	-1	validated	p.E598K	0.976	211	0%	228	35.5%	13	38.4%	probably_damaging(0.998)	tolerated(0.64)	deleterious(0.477)	NULL
WDR88	126248	genome.wustl.edu	37	19	33639783	33639783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173479.3	+1	validated	p.A216T	0.626	207	0%	177	27.7%	0	-	possibly_damaging(0.49)	tolerated(0.18)	neutral(0.219)	superfamily_WD40 repeat-like
RPS4XP21	126235	genome.wustl.edu	37	19	34513755	34513755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000334591	-1	known	p.K199N	1.000	42	0%	50	24%	0	-	-	-	-	NULL
RPS4XP21	126235	genome.wustl.edu	37	19	34583602	34583602	+	Missense_Mutation	SNP	G	G	A	rs137882021	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000469064	-1	known	p.T216M	0.994	42	0%	46	37%	0	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
RPS4XP21	126235	genome.wustl.edu	37	19	34583965	34583965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000469064	-1	known	p.G95E	1.000	117	0%	108	20.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF599	148103	genome.wustl.edu	37	19	35250401	35250401	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007248.2	-1	validated	p.S435	0.009	143	0%	137	31.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35448950	35448950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175872.4	-1	validated	p.E603D	0.041	76	0%	72	16.7%	0	-	possibly_damaging(0.649)	tolerated(0.41)	neutral(0.243)	NULL
FAM187B	148109	genome.wustl.edu	37	19	35718915	35718915	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152481.1	-1	provisional	p.L223	0.000	62	0%	75	30.7%	0	-	-	-	-	NULL
HAMP	57817	genome.wustl.edu	37	19	35773519	35773520	+	In_Frame_Ins	INS	-	-	CTC	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021175.2	+1	reviewed	p.17in_frame_insL	0.984:0.987	-	-	-	-	-	-	-	-	-	HMMPfam_Hepcidin
CD22	933	genome.wustl.edu	37	19	35832839	35832839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001771.3	+1	validated	p.R669H	0.003	242	0.4%	263	30%	0	-	benign(0.002)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00409,superfamily_Immunoglobulin
FFAR3	2865	genome.wustl.edu	37	19	35850257	35850257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005304.3	+1	validated	p.F155L	0.000	88	0%	97	23.7%	0	-	benign(0.055)	tolerated(0.34)	neutral(0.026)	HMMPfam_7tm_1,superfamily_SSF81321
FFAR3	2865	genome.wustl.edu	37	19	35850397	35850397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005304.3	+1	validated	p.Y202C	1.000	58	0%	70	21.4%	0	-	benign(0.054)	deleterious(0.01)	neutral(0.409)	HMMPfam_7tm_1,superfamily_SSF81321
GAPDHS	26330	genome.wustl.edu	37	19	36034688	36034688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014364.4	+1	reviewed	p.K339E	0.996	40	0%	39	35.9%	2	100%	benign(0)	tolerated(1)	-	HMMPfam_Gp_dh_C,superfamily_SSF55347
MLL4	9757	genome.wustl.edu	37	19	36220075	36220075	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014727.1	+1	reviewed	p.L1599V	1.000	25	0%	32	34.4%	5	20%	possibly_damaging(0.666)	-	-	NULL
NPHS1	4868	genome.wustl.edu	37	19	36336295	36336295	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004646.3	-1	reviewed	p.S635	1.000	36	0%	41	36.6%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
NPHS1	4868	genome.wustl.edu	37	19	36342709	36342709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004646.3	-1	reviewed	p.L11I	0.101	7	0.000	6	0.667	0	-	unknown(0)	deleterious(0.04)	-	NULL
KIRREL2	84063	genome.wustl.edu	37	19	36357303	36357303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199180.2	+1	validated	p.F679S	0.993	124	0%	97	29.9%	2	50%	benign(0.071)	deleterious(0.01)	neutral(0.411)	NULL
KIRREL2	84063	genome.wustl.edu	37	19	36357398	36357398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032123.5	+1	validated	p.S621Y	0.142	144	0%	94	23.4%	0	-	possibly_damaging(0.604)	tolerated(0.1)	deleterious(0.496)	NULL
WDR62	284403	genome.wustl.edu	37	19	36594454	36594454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083961.1	+1	validated	p.V1242M	0.000	56	0%	37	32.4%	9	77.7%	benign(0.313)	tolerated(0.08)	neutral(0.397)	NULL
ZNF565	147929	genome.wustl.edu	37	19	36673664	36673664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042474.1	-1	validated	p.R402C	0.005	206	0%	251	25.9%	3	66.6%	benign(0.231)	tolerated(0.22)	neutral(0.065)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF146	7705	genome.wustl.edu	37	19	36727979	36727979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099638.1	+1	validated	p.E213K	0.994	179	0%	206	31.6%	38	39.4%	benign(0.002)	tolerated(0.45)	neutral(0.012)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP14	57677	genome.wustl.edu	37	19	36832078	36832078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020917.1	-1	provisional	p.R217Q	0.001	309	0%	258	32.2%	0	-	benign(0.153)	tolerated(0.95)	neutral(0.013)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP14	57677	genome.wustl.edu	37	19	36832181	36832181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020917.1	-1	provisional	p.R183C	0.148	392	0%	306	28.4%	0	-	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP14	57677	genome.wustl.edu	37	19	36853105	36853105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020917.1	-1	provisional	p.F15L	1.000	184	0%	189	23.3%	1	100%	benign(0.227)	deleterious(0.04)	neutral(0.371)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
LOC644189	644189	genome.wustl.edu	37	19	36913052	36913052	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_016949.3	+1	model	NULL	1.000	112	0%	106	33%	0	-	-	-	-	-
ZNF529	57711	genome.wustl.edu	37	19	37038837	37038837	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145649.1	-1	validated	p.F208C	0.030	157	0%	167	33.5%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2H2 and C2HC zinc fingers
ZNF382	84911	genome.wustl.edu	37	19	37117689	37117689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032825.3	+1	validated	p.H297R	0.656	278	0%	309	30.7%	2	0%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF382	84911	genome.wustl.edu	37	19	37118166	37118166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032825.3	+1	validated	p.R456I	1.000	224	0%	240	35.8%	0	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF461	92283	genome.wustl.edu	37	19	37129898	37129898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153257.2	-1	validated	p.F450C	0.957	218	0%	219	23.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF567	163081	genome.wustl.edu	37	19	37211368	37211368	+	Missense_Mutation	SNP	G	G	T	rs192986331	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152603.2	+1	provisional	p.R550I	1.000	107	0%	136	28.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF790	388536	genome.wustl.edu	37	19	37309621	37309621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206894.2	-1	validated	p.S542Y	0.203	208	0%	196	34.7%	1	100%	possibly_damaging(0.777)	deleterious(0)	deleterious(0.734)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF829	374899	genome.wustl.edu	37	19	37382626	37382626	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037232.3	-1	validated	p.E356A	0.436	186	0%	195	27.7%	0	-	possibly_damaging(0.78)	deleterious(0.01)	deleterious(0.697)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF568	374900	genome.wustl.edu	37	19	37441006	37441006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198539.2	+1	validated	p.Q317H	0.016	138	0%	143	30.1%	0	-	benign(0.032)	tolerated(0.14)	neutral(0.251)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF568	374900	genome.wustl.edu	37	19	37441156	37441156	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198539.2	+1	validated	p.C367	1.000	185	0%	179	31.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF568	374900	genome.wustl.edu	37	19	37487993	37487993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000455427	+1	known	p.S403N	0.000	36	0%	30	46.7%	0	-	possibly_damaging(0.736)	tolerated(0.21)	neutral(0.313)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF420	147923	genome.wustl.edu	37	19	37581970	37581970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144689.3	+1	provisional	p.R28I	0.559	203	0%	163	30.1%	0	-	benign(0.056)	deleterious(0)	neutral(0.448)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF585A	199704	genome.wustl.edu	37	19	37644119	37644119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152655.2	-1	validated	p.D173Y	0.299	392	0%	408	32.8%	2	0%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF585B	92285	genome.wustl.edu	37	19	37676394	37676394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152279.3	-1	validated	p.R682I	0.997	409	0%	387	22.2%	1	100%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37677410	37677410	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152279.3	-1	validated	p.T343	0.027	511	0%	382	27.7%	2	0%	-	-	-	superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37677638	37677638	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152279.3	-1	validated	p.E267	1.000	522	0%	452	27.4%	0	-	-	-	-	superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37677920	37677920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152279.3	-1	validated	p.F173L	0.036	350	0.3%	315	29.8%	0	-	probably_damaging(0.988)	tolerated(1)	neutral(0.438)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37680979	37680979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152279.3	-1	validated	p.R49I	0.983	254	0%	206	33.5%	1	100%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF569	148266	genome.wustl.edu	37	19	37904067	37904067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152484.2	-1	validated	p.E498G	0.004	171	0%	207	31.9%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF569	148266	genome.wustl.edu	37	19	37904496	37904496	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152484.2	-1	validated	p.K355T	0.204	252	0%	283	27.9%	0	-	benign(0.07)	tolerated(0.18)	neutral(0.061)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF570	148268	genome.wustl.edu	37	19	37966850	37966850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144694.1	+1	provisional	p.S34F	1.000	301	0%	308	29.5%	0	-	probably_damaging(0.965)	tolerated(0.06)	deleterious(0.730)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF570	148268	genome.wustl.edu	37	19	37975114	37975114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144694.1	+1	provisional	p.R197I	0.477	450	0%	424	29.5%	1	100%	benign(0.077)	deleterious(0.01)	neutral(0.411)	superfamily_C2H2 and C2HC zinc fingers
ZNF793	390927	genome.wustl.edu	37	19	38028578	38028578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013659.2	+1	validated	p.R340C	0.006	59	0%	90	34.4%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF793	390927	genome.wustl.edu	37	19	38028712	38028712	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013659.2	+1	validated	p.R384	0.434	51	0%	69	26.1%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP30	22835	genome.wustl.edu	37	19	38126967	38126967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014898.2	-1	validated	p.E159K	0.036	266	0%	204	27.9%	1	100%	probably_damaging(0.999)	tolerated(0.89)	deleterious(0.490)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF781	163115	genome.wustl.edu	37	19	38160678	38160678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152605.3	-1	validated	p.K124N	0.114	254	0.4%	254	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
ZNF607	84775	genome.wustl.edu	37	19	38189263	38189263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032689.4	-1	validated	p.E590G	0.034	128	0%	155	23.2%	4	75%	benign(0.051)	tolerated(0.38)	neutral(0.021)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38190382	38190382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032689.4	-1	validated	p.R217I	0.369	200	0%	219	25.1%	0	-	possibly_damaging(0.95)	deleterious(0.05)	deleterious(0.739)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38190715	38190715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032689.4	-1	validated	p.R106I	0.261	166	0%	140	33.6%	0	-	benign(0.378)	tolerated(0.24)	neutral(0.158)	superfamily_C2H2 and C2HC zinc fingers
CATSPERG	57828	genome.wustl.edu	37	19	38860873	38860873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021185.4	+1	validated	p.P1063L	0.000	68	0%	81	33.3%	0	-	benign(0.072)	deleterious(0.03)	neutral(0.369)	NULL
FAM98C	147965	genome.wustl.edu	37	19	38895721	38895721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174905.3	+1	validated	p.A175T	0.940	71	1.4%	120	24.2%	36	63.8%	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	HMMPfam_DUF2465
RYR1	6261	genome.wustl.edu	37	19	38934430	38934430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000540.2	+1	reviewed	p.A140T	0.997	116	0%	95	32.6%	0	-	benign(0.009)	-	-	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
RYR1	6261	genome.wustl.edu	37	19	38981328	38981328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000540.2	+1	reviewed	p.R2028Q	0.999	111	0%	132	37.9%	0	-	benign(0.389)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39023370	39023370	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000540.2	+1	reviewed	p.S3751	0.998	63	0%	44	38.6%	0	-	-	-	-	NULL
HNRNPL	3191	genome.wustl.edu	37	19	39327370	39327370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001533.2	-1	reviewed	p.A588T	1.000	390	0%	280	22.9%	588	39.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PAF1	54623	genome.wustl.edu	37	19	39880008	39880008	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019088.2	-1	provisional	p.A125	0.010	67	0%	65	30.8%	50	52%	-	-	-	HMMPfam_Paf1
SUPT5H	6829	genome.wustl.edu	37	19	39960840	39960840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001111020.2	+1	validated	p.E486K	1.000	298	0%	274	28.1%	78	44.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_KOW,HMMSmart_SM00739,superfamily_Translation proteins SH3-like domain
DLL3	10683	genome.wustl.edu	37	19	39995961	39995961	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016941.3	+1	reviewed	p.C321*	1.000	59	0%	62	17.7%	1	0%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
LOC148003	148003	genome.wustl.edu	37	19	40149281	40149281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001721341.1	+1	model	p.R122C	0.018	47	0%	61	16.4%	0	-	benign(0.02)	tolerated(0.26)	neutral(0.035)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
FBL	2091	genome.wustl.edu	37	19	40331282	40331282	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001436.3	-1	reviewed	p.G52	0.002	180	0%	206	31.1%	26	26.9%	-	-	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40370207	40370207	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003890.2	-1	validated	p.I4153	0.304	211	0%	196	12.2%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40376760	40376760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003890.2	-1	validated	p.D3888Y	0.043	217	0.5%	167	14.4%	2	0%	unknown(0)	tolerated(0.12)	-	HMMPfam_C8
PSMC4	5704	genome.wustl.edu	37	19	40478337	40478337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006503.2	+1	reviewed	p.K66T	1.000	82	0%	65	36.9%	126	52.3%	benign(0.064)	deleterious(0)	neutral(0.449)	NULL
ZNF780B	163131	genome.wustl.edu	37	19	40541836	40541836	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005851.2	-1	validated	p.C310	1.000	369	0%	371	29.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40580565	40580565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142577.1	-1	validated	p.R596Q	0.000	401	0%	385	27%	1	100%	benign(0.036)	tolerated(0.59)	neutral(0.006)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40581216	40581216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142577.1	-1	validated	p.R379H	0.000	548	0%	442	30.5%	1	100%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40581406	40581406	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142577.1	-1	validated	p.R316*	0.000	505	0.2%	451	32.8%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
AKT2	208	genome.wustl.edu	37	19	40761146	40761146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001626.3	-1	reviewed	p.R69Q	0.995	250	0%	195	17.4%	48	18.7%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
HIPK4	147746	genome.wustl.edu	37	19	40889827	40889827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144685.3	-1	provisional	p.E229K	0.996	65	0%	64	37.5%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SPTBN4	57731	genome.wustl.edu	37	19	41071391	41071391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020971.2	+1	reviewed	p.A1993V	0.998	59	0%	38	23.7%	1	100%	possibly_damaging(0.894)	deleterious(0.01)	deleterious(0.758)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
RAB4B	53916	genome.wustl.edu	37	19	41286403	41286403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016154.3	+1	validated	p.R71W	1.000	28	0%	24	33.3%	34	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CYP2B6	1555	genome.wustl.edu	37	19	41509950	41509950	+	Silent	SNP	G	G	A	rs28399485		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000767.4	+1	reviewed	p.P72	0.000	118	0%	112	45.5%	2	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2F1	1572	genome.wustl.edu	37	19	41627951	41627951	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000774.3	+1	reviewed	p.I245	0.343	133	0%	181	34.3%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
AXL	558	genome.wustl.edu	37	19	41727877	41727877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021913.3	+1	reviewed	p.P168S	1.000	27	0%	31	38.7%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,superfamily_Immunoglobulin
AXL	558	genome.wustl.edu	37	19	41743919	41743919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021913.3	+1	reviewed	p.S285L	0.958	236	0%	239	27.6%	8	0%	benign(0)	tolerated(0.81)	neutral(0.001)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CEACAM5	1048	genome.wustl.edu	37	19	42224988	42224988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004363.2	+1	validated	p.L640I	0.504	200	0.5%	214	28.5%	99	4%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CEACAM6	4680	genome.wustl.edu	37	19	42266002	42266002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002483.4	+1	validated	p.F277L	0.000	169	0%	155	29%	70	7.1%	benign(0)	tolerated(1)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ATP1A3	478	genome.wustl.edu	37	19	42485658	42485658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152296.3	-1	reviewed	p.Y478C	1.000	124	0%	91	28.6%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
POU2F2	5452	genome.wustl.edu	37	19	42599712	42599712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002698.2	-1	validated	p.E297D	1.000	30	0%	18	38.9%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CEACAM1	634	genome.wustl.edu	37	19	43016516	43016516	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001712.4	-1	reviewed	p.F454	0.000	166	0%	225	28%	3	66.6%	-	-	-	NULL
CEACAM1	634	genome.wustl.edu	37	19	43023250	43023250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001712.4	-1	reviewed	p.L366F	0.001	138	0%	123	40.7%	5	20%	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CEACAM8	1088	genome.wustl.edu	37	19	43093852	43093852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001816.3	-1	validated	p.S154A	0.081	717	0%	639	26.8%	6	0%	possibly_damaging(0.824)	tolerated(0.26)	neutral(0.346)	HMMSmart_SM00409,superfamily_Immunoglobulin
CEACAM8	1088	genome.wustl.edu	37	19	43098046	43098046	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001816.3	-1	validated	p.L24H	0.033	738	0%	807	38.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-set
PSG3	5671	genome.wustl.edu	37	19	43234003	43234003	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021016.3	-1	validated	p.T305	0.627	617	0%	534	25.7%	0	-	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
PSG3	5671	genome.wustl.edu	37	19	43237124	43237124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021016.3	-1	validated	p.P174L	0.011	840	0.2%	768	29.3%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
PSG1	5669	genome.wustl.edu	37	19	43372357	43372357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006905.2	-1	validated	p.F380S	0.023	495	0%	454	28.6%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSG11	5680	genome.wustl.edu	37	19	43519445	43519445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002785.2	-1	validated	p.A263T	0.001	459	0%	384	38%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSG11	5680	genome.wustl.edu	37	19	43529050	43529050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002785.2	-1	validated	p.L75I	0.000	747	0%	666	25.1%	0	-	possibly_damaging(0.492)	tolerated(0.43)	neutral(0.178)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
LYPD3	27076	genome.wustl.edu	37	19	43965973	43965973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014400.2	-1	validated	p.R191W	0.928	96	1%	83	28.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UPAR_LY6
PHLDB3	653583	genome.wustl.edu	37	19	44006256	44006256	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198850.3	-1	validated	p.I131	1.000	33	0%	35	14.3%	0	-	-	-	-	NULL
ZNF428	126299	genome.wustl.edu	37	19	44118444	44118444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182498.3	-1	validated	p.R5C	1.000	75	0%	107	43%	117	41%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ZNF283	284349	genome.wustl.edu	37	19	44351269	44351269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181845.1	+1	validated	p.E172D	0.013	93	0%	62	25.8%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
ZNF404	342908	genome.wustl.edu	37	19	44376932	44376932	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033719.2	-1	validated	p.S478	0.000	101	0%	86	23.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF404	342908	genome.wustl.edu	37	19	44377174	44377174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001033719.2	-1	validated	p.L398I	0.114	94	0%	86	36%	0	-	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF45	7596	genome.wustl.edu	37	19	44418697	44418697	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003425.3	-1	validated	p.V297	0.700	197	0%	190	30%	5	60%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF221	7638	genome.wustl.edu	37	19	44469478	44469478	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013359.2	+1	validated	e3+1	0.011	143	0%	138	34.8%	0	-	-	-	-	-
ZNF155	7711	genome.wustl.edu	37	19	44501043	44501043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003445.2	+1	validated	p.R345I	0.004	421	0%	374	34.5%	2	0%	unknown(0)	tolerated(0.34)	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF222	7673	genome.wustl.edu	37	19	44536909	44536909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001129996.1	+1	validated	p.R401K	0.004	181	0%	203	26.1%	1	0%	benign(0.343)	tolerated(0.47)	neutral(0.119)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF223	7766	genome.wustl.edu	37	19	44571023	44571023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013361.4	+1	validated	p.E348*	0.280	294	0%	263	27.8%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF223	7766	genome.wustl.edu	37	19	44571086	44571086	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013361.4	+1	validated	p.E369*	1.000	241	0%	220	29.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF223	7766	genome.wustl.edu	37	19	44571414	44571414	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013361.4	+1	validated	p.F478C	0.017	117	0%	102	26.5%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
ZNF284	342909	genome.wustl.edu	37	19	44591158	44591158	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037813.2	+1	provisional	p.K509	0.958	190	0%	199	32.7%	0	-	-	-	-	superfamily_SSF57667
ZNF225	7768	genome.wustl.edu	37	19	44635770	44635770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013362.2	+1	validated	p.R335C	0.003	462	0%	460	28%	1	0%	benign(0.122)	tolerated(0.2)	neutral(0.059)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF226	7769	genome.wustl.edu	37	19	44681046	44681046	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001032372.1	+1	validated	p.S544*	0.158	247	0%	276	31.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF227	7770	genome.wustl.edu	37	19	44739561	44739561	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182490.1	+1	provisional	p.C326	0.088	169	0%	161	33.5%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF233	353355	genome.wustl.edu	37	19	44778496	44778496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181756.1	+1	provisional	p.E561D	1.000	308	0%	309	31.7%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	superfamily_C2H2 and C2HC zinc fingers
ZNF235	9310	genome.wustl.edu	37	19	44792470	44792470	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004234.4	-1	reviewed	p.K373T	1.000	141	0%	129	17.1%	0	-	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	superfamily_C2H2 and C2HC zinc fingers
ZFP112	7771	genome.wustl.edu	37	19	44831920	44831920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001083335.1	-1	validated	p.R803I	0.997	359	0%	372	11.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2H2 and C2HC zinc fingers
ZNF285	26974	genome.wustl.edu	37	19	44890896	44890896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152354.3	-1	validated	p.R504I	0.661	192	0%	153	30.7%	0	-	benign(0.081)	tolerated(0.17)	neutral(0.065)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF229	7772	genome.wustl.edu	37	19	44933328	44933328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014518.2	-1	validated	p.K543T	0.946	216	0%	188	25%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_C2H2 and C2HC zinc fingers
ZNF229	7772	genome.wustl.edu	37	19	44934086	44934086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014518.2	-1	validated	p.E290D	0.920	92	0%	83	14.5%	0	-	benign(0.051)	tolerated(0.27)	neutral(0.037)	superfamily_C2H2 and C2HC zinc fingers
ZNF229	7772	genome.wustl.edu	37	19	44934249	44934249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014518.2	-1	validated	p.I236T	0.001	144	0%	130	23.1%	0	-	benign(0.202)	tolerated(0.65)	neutral(0.022)	NULL
ZNF229	7772	genome.wustl.edu	37	19	44934346	44934346	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014518.2	-1	validated	p.K204*	0.000	159	0%	164	31.1%	0	-	-	-	-	NULL
ZNF180	7733	genome.wustl.edu	37	19	44980740	44980740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013256.3	-1	validated	p.R653I	1.000	656	0.2%	517	35.4%	4	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44980908	44980908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013256.3	-1	validated	p.R597I	0.998	583	0%	438	15.3%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44980992	44980992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013256.3	-1	validated	p.R569K	1.000	544	0%	408	32.4%	6	83.3%	probably_damaging(0.982)	tolerated(0.32)	neutral(0.451)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
QPCTL	54814	genome.wustl.edu	37	19	46198903	46198903	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017659.3	+1	validated	p.S187*	1.000	48	0%	57	33.3%	3	0%	-	-	-	HMMPfam_Peptidase_M28,superfamily_SSF53187
SYMPK	8189	genome.wustl.edu	37	19	46345720	46345720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004819.2	-1	reviewed	p.S292L	1.000	85	0%	100	30%	25	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
FOXA3	3171	genome.wustl.edu	37	19	46375766	46375766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004497.2	+1	reviewed	p.S168L	1.000	223	0%	220	40.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
IRF2BP1	26145	genome.wustl.edu	37	19	46388373	46388373	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015649.1	-1	provisional	p.E220	1.000	47	0%	46	26.1%	43	51.1%	-	-	-	NULL
IGFL4	444882	genome.wustl.edu	37	19	46543451	46543451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002923.1	-1	provisional	p.D98E	0.001	256	0%	255	12.5%	0	-	benign(0.121)	tolerated(0.95)	neutral(0.009)	NULL
IGFL4	444882	genome.wustl.edu	37	19	46544204	46544204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002923.1	-1	provisional	p.S6Y	0.000	25	0%	28	32.1%	0	-	benign(0.037)	tolerated(0.1)	neutral(0.288)	NULL
IGFL2	147920	genome.wustl.edu	37	19	46664106	46664106	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002915.2	+1	validated	p.C114	0.001	130	0%	164	36%	2	0%	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47422697	47422697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004491.4	+1	reviewed	p.K255N	0.998	119	0%	107	38.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SLC8A2	6543	genome.wustl.edu	37	19	47944679	47944679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015063.2	-1	validated	p.K594N	1.000	30	0%	42	23.8%	0	-	benign(0.089)	tolerated(0.48)	neutral(0.017)	HMMPfam_Calx-beta,HMMSmart_SM00237
CRX	1406	genome.wustl.edu	37	19	48342596	48342596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000554.4	+1	reviewed	p.R91M	0.995	623	0%	614	29.6%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
CABP5	56344	genome.wustl.edu	37	19	48543967	48543967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019855.3	-1	reviewed	p.D45Y	1.000	185	0%	147	29.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
PLA2G4C	8605	genome.wustl.edu	37	19	48558278	48558278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003706.2	-1	reviewed	p.R429H	0.003	57	0%	76	36.8%	1	0%	benign(0.006)	tolerated(0.13)	neutral(0.253)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
IZUMO1	284359	genome.wustl.edu	37	19	49246712	49246712	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182575.2	-1	validated	p.Y163	0.000	45	0%	39	33.3%	0	-	-	-	-	superfamily_Immunoglobulin
PLEKHA4	57664	genome.wustl.edu	37	19	49341331	49341331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020904.2	-1	validated	p.L674F	1.000	113	0%	127	25.2%	8	0%	benign(0.053)	tolerated(0.07)	neutral(0.323)	NULL
TULP2	7288	genome.wustl.edu	37	19	49398363	49398363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003323.2	-1	validated	p.D136N	0.045	148	0%	175	28.6%	0	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	NULL
CGB7	94027	genome.wustl.edu	37	19	49557794	49557794	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033142.1	-1	reviewed	p.F84	0.959	79	0%	71	14.1%	4	0%	-	-	-	HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501
KCNA7	3743	genome.wustl.edu	37	19	49573956	49573956	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031886.2	-1	reviewed	p.I245	1.000	62	0%	70	27.1%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
LIN7B	64130	genome.wustl.edu	37	19	49619697	49619697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022165.2	+1	validated	p.R136C	1.000	37	0%	38	23.7%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
CPT1C	126129	genome.wustl.edu	37	19	50213615	50213615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152359.1	+1	provisional	p.K535N	1.000	94	0%	134	15.7%	3	0%	benign(0.01)	tolerated(0.24)	neutral(0.038)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
TSKS	60385	genome.wustl.edu	37	19	50243431	50243431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021733.1	-1	reviewed	p.R503C	1.000	228	0%	211	28.9%	2	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ATF5	22809	genome.wustl.edu	37	19	50436243	50436243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012068.4	+1	validated	p.R248H	1.000	42	0%	42	31%	49	36.7%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_BRLZ,HMMPfam_bZIP_1
ZNF473	25888	genome.wustl.edu	37	19	50549532	50549532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001006656.1	+1	validated	p.R611K	0.307	156	0%	196	28.1%	2	0%	benign(0.002)	tolerated(0.65)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IZUMO2	126123	genome.wustl.edu	37	19	50666340	50666340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152358.2	-1	validated	p.A38T	0.002	31	0%	35	40%	0	-	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
KCNC3	3748	genome.wustl.edu	37	19	50827028	50827028	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004977.2	-1	reviewed	p.L394	0.996	38	0%	39	12.8%	2	0%	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
NAPSA	9476	genome.wustl.edu	37	19	50862331	50862331	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004851.1	-1	reviewed	p.P324	0.807	59	0%	85	24.7%	0	-	-	-	-	HMMPfam_Asp,superfamily_Pept_Aspartic
NR1H2	7376	genome.wustl.edu	37	19	50882274	50882274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007121.4	+1	validated	p.A255T	0.474	81	0%	51	29.4%	130	25.3%	benign(0)	tolerated(0.57)	neutral(0.006)	superfamily_Nuclear receptor ligand-binding domain
LRRC4B	94030	genome.wustl.edu	37	19	51022595	51022595	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080457.1	-1	provisional	p.I125	1.000	27	0%	39	28.2%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
KLK3	354	genome.wustl.edu	37	19	51359542	51359542	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001648.2	+1	reviewed	p.C31	0.006	164	0%	175	21.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK4	9622	genome.wustl.edu	37	19	51412524	51412524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004917.3	-1	reviewed	p.A70T	0.364	126	0%	122	35.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
KLK5	25818	genome.wustl.edu	37	19	51452216	51452216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001077491.1	-1	reviewed	p.R164H	0.000	60	0%	66	42.4%	0	-	possibly_damaging(0.925)	tolerated(0.19)	neutral(0.423)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK8	11202	genome.wustl.edu	37	19	51503408	51503408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144505.1	-1	reviewed	p.D158N	0.001	83	0%	135	35.6%	1	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SIGLEC7	27036	genome.wustl.edu	37	19	51649378	51649378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014385.2	+1	validated	p.G343C	0.000	137	0%	132	10.6%	2	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
ENSG00000171101	0	genome.wustl.edu	37	19	51671098	51671098	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000341811	+1	known	p.K102Q	0.000	96	0%	72	36.1%	0	-	benign(0.347)	deleterious(0.01)	deleterious(0.516)	HMMSmart_IG,superfamily_SSF48726
CD33	945	genome.wustl.edu	37	19	51728768	51728768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001772.3	+1	validated	p.R111M	0.000	300	0%	286	28%	0	-	possibly_damaging(0.494)	tolerated(0.1)	neutral(0.451)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC10	89790	genome.wustl.edu	37	19	51919987	51919987	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033130.4	-1	validated	p.L213	1.000	85	0%	82	30.5%	4	25%	-	-	-	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
SIGLEC10	89790	genome.wustl.edu	37	19	51920820	51920820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033130.4	-1	validated	p.L6M	0.126	90	0%	74	32.4%	1	0%	-	-	-	NULL
SIGLEC8	27181	genome.wustl.edu	37	19	51958904	51958904	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014442.2	-1	validated	p.V273	0.002	88	0%	76	30.3%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SIGLEC8	27181	genome.wustl.edu	37	19	51960723	51960723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014442.2	-1	validated	p.D242G	0.000	76	0%	98	34.7%	2	0%	benign(0.028)	deleterious(0.03)	neutral(0.366)	HMMSmart_SM00409,superfamily_Immunoglobulin
CEACAM18	729767	genome.wustl.edu	37	19	51986279	51986279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080405.1	+1	provisional	p.D289N	0.001	200	0%	252	36.5%	0	-	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	superfamily_Immunoglobulin
ZNF175	7728	genome.wustl.edu	37	19	52091239	52091239	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007147.2	+1	validated	p.I552S	0.701	235	0%	231	24.7%	4	0%	benign(0.011)	tolerated(0.11)	neutral(0.272)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF175	7728	genome.wustl.edu	37	19	52091486	52091486	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007147.2	+1	validated	p.Q634	0.922	371	0%	326	25.8%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HAS1	3036	genome.wustl.edu	37	19	52222512	52222512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001523.2	-1	reviewed	p.E217K	1.000	97	0%	64	32.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF53448
LOC100287831	100287831	genome.wustl.edu	37	19	52249948	52249948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343694.1	+1	model	p.E176K	0.005	266	0%	270	27.4%	8	0%	-	-	-	NULL
FPR3	2359	genome.wustl.edu	37	19	52327365	52327365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002030.3	+1	validated	p.D122N	1.000	369	0%	315	11.1%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ZNF577	84765	genome.wustl.edu	37	19	52376303	52376303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032679.2	-1	validated	p.T314P	0.013	188	0%	202	27.2%	2	0%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF649	65251	genome.wustl.edu	37	19	52394376	52394376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023074.3	-1	validated	p.R338Q	0.984	226	0.9%	192	35.9%	7	42.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF613	79898	genome.wustl.edu	37	19	52443551	52443551	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031721.3	+1	validated	p.D35	0.958	297	1%	300	32.7%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF613	79898	genome.wustl.edu	37	19	52448311	52448311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031721.3	+1	validated	p.R392Q	0.988	196	0.5%	228	31.1%	1	100%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF613	79898	genome.wustl.edu	37	19	52448820	52448820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031721.3	+1	validated	p.L562F	0.000	103	0%	105	33.3%	2	0%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
ZNF615	284370	genome.wustl.edu	37	19	52496146	52496146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198480.2	-1	provisional	p.R728I	0.001	402	0%	366	32.2%	4	50%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52497238	52497238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198480.2	-1	provisional	p.R364Q	0.957	201	0%	197	28.9%	2	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52497516	52497516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198480.2	-1	provisional	p.K271N	0.015	304	0%	283	36%	0	-	probably_damaging(0.978)	tolerated(0.24)	neutral(0.458)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF614	80110	genome.wustl.edu	37	19	52519532	52519532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025040.3	-1	validated	p.R440H	0.000	369	0%	362	29.8%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52537754	52537754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014650.2	-1	provisional	p.R393Q	0.295	284	0%	251	32.7%	1	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52568865	52568865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136499.1	-1	validated	p.R757I	0.403	83	0%	86	31.4%	1	100%	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52569031	52569031	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136499.1	-1	validated	p.N702H	0.000	70	0%	73	27.4%	5	0%	possibly_damaging(0.765)	deleterious(0)	deleterious(0.728)	superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52570545	52570545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136499.1	-1	validated	p.K197R	0.000	7	0.000	12	0.417	1	0%	benign(0.381)	tolerated(0.84)	neutral(0.122)	NULL
ZNF841	284371	genome.wustl.edu	37	19	52570753	52570753	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136499.1	-1	validated	p.N128H	0.004	26	0%	14	28.6%	0	-	possibly_damaging(0.8)	tolerated(0.06)	deleterious(0.623)	NULL
ZNF616	90317	genome.wustl.edu	37	19	52618543	52618543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178523.3	-1	validated	p.R625I	0.010	169	0%	225	36.9%	6	83.3%	benign(0.044)	tolerated(0.17)	neutral(0.061)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52620065	52620065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178523.3	-1	validated	p.N118D	0.000	287	0%	329	32.5%	2	100%	probably_damaging(0.955)	tolerated(0.6)	neutral(0.403)	NULL
ZNF836	162962	genome.wustl.edu	37	19	52659971	52659971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102657.1	-1	provisional	p.R322I	1.000	109	0%	115	29.6%	0	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PPP2R1A	5518	genome.wustl.edu	37	19	52716329	52716329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014225.5	+1	reviewed	p.R258H	0.998	34	0%	44	40.9%	332	45.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
ZNF766	90321	genome.wustl.edu	37	19	52793606	52793606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010851.2	+1	validated	p.E188K	0.000	285	0%	269	27.1%	7	0%	benign(0.001)	tolerated(1)	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF766	90321	genome.wustl.edu	37	19	52794168	52794168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010851.2	+1	validated	p.R375I	0.053	101	0%	108	25.9%	6	0%	benign(0.294)	tolerated(0.19)	neutral(0.141)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52817467	52817467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144684.2	+1	validated	p.D45G	0.758	366	0%	332	29.2%	2	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF480	147657	genome.wustl.edu	37	19	52825330	52825330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144684.2	+1	validated	p.R276Q	0.000	138	0%	159	29.6%	2	0%	possibly_damaging(0.696)	tolerated(0.75)	neutral(0.251)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52826068	52826068	+	Missense_Mutation	SNP	G	G	A	rs189217102	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144684.2	+1	validated	p.R522H	0.000	130	0%	157	21%	3	66.6%	benign(0.001)	tolerated(0.69)	neutral(0.002)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF610	162963	genome.wustl.edu	37	19	52869757	52869757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173530.2	+1	validated	p.E376K	0.025	165	0%	136	29.4%	3	33.3%	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF880	400713	genome.wustl.edu	37	19	52887948	52887948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145434.1	+1	validated	p.R372I	0.031	120	0%	136	30.1%	1	0%	benign(0.028)	tolerated(0.29)	neutral(0.031)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52918555	52918555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032423.2	+1	validated	p.K150N	0.000	160	0%	137	28.5%	5	60%	possibly_damaging(0.836)	tolerated(0.15)	deleterious(0.560)	NULL
ZNF528	84436	genome.wustl.edu	37	19	52919846	52919846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032423.2	+1	validated	p.E581K	0.022	132	0%	117	28.2%	0	-	benign(0.199)	tolerated(0.11)	neutral(0.291)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF534	147658	genome.wustl.edu	37	19	52937243	52937243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143939.1	+1	validated	p.F17L	0.999	189	0%	165	27.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF578	147660	genome.wustl.edu	37	19	53014323	53014323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099694.1	+1	validated	p.S230Y	0.063	372	0.5%	369	24.1%	0	-	probably_damaging(0.974)	tolerated(0.06)	deleterious(0.738)	superfamily_C2H2 and C2HC zinc fingers
ENSG00000248326	0	genome.wustl.edu	37	19	53015754	53015754	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000502966	-1	novel	NULL	1.000	51	0%	69	26.1%	0	-	-	-	-	-
ZNF600	162966	genome.wustl.edu	37	19	53270128	53270128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198457.2	-1	validated	p.R294I	0.994	546	0%	533	30.2%	6	33.3%	benign(0.047)	tolerated(0.21)	neutral(0.047)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000245932	0	genome.wustl.edu	37	19	53302002	53302002	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000500436	+1	known	NULL	0.012	55	0%	47	34%	0	-	-	-	-	-
ZNF468	90333	genome.wustl.edu	37	19	53344312	53344312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008801.1	-1	validated	p.K412T	0.275	383	0%	498	32.9%	8	37.5%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF160	90338	genome.wustl.edu	37	19	53572789	53572789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102603.1	-1	reviewed	p.R333Q	0.012	236	0%	226	22.6%	2	0%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF415	55786	genome.wustl.edu	37	19	53612087	53612087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018355.2	-1	validated	p.R404I	0.054	211	0%	257	33.9%	0	-	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF415	55786	genome.wustl.edu	37	19	53613051	53613051	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018355.2	-1	validated	p.E83*	0.014	217	0%	229	24%	0	-	-	-	-	NULL
ZNF347	84671	genome.wustl.edu	37	19	53644310	53644310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032584.2	-1	validated	p.H591Y	0.998	487	0%	459	34.2%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF677	342926	genome.wustl.edu	37	19	53741048	53741048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182609.2	-1	provisional	p.R311I	0.001	135	0%	162	32.7%	0	-	possibly_damaging(0.699)	tolerated(0.75)	neutral(0.253)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF765	91661	genome.wustl.edu	37	19	53911344	53911344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040185.1	+1	provisional	p.R179I	0.000	193	0%	202	28.7%	1	100%	benign(0.061)	tolerated(0.12)	neutral(0.265)	NULL
ZNF765	91661	genome.wustl.edu	37	19	53911569	53911569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001040185.1	+1	provisional	p.S254L	0.000	237	0%	261	34.9%	1	100%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF761	388561	genome.wustl.edu	37	19	53957910	53957910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008401.3	+1	validated	p.S50Y	0.212	139	0%	142	21.1%	0	-	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF813	126017	genome.wustl.edu	37	19	53994082	53994082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004301.3	+1	validated	p.S199Y	0.026	417	0%	408	29.2%	0	-	benign(0.124)	tolerated(0.35)	neutral(0.030)	superfamily_SSF57667
DPRX	503834	genome.wustl.edu	37	19	54135382	54135382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012728.1	+1	validated	p.R8C	0.545	268	0%	263	30.8%	0	-	benign(0.062)	deleterious(0)	neutral(0.449)	superfamily_Homeodomain_like
MIR518B	574474	genome.wustl.edu	37	19	54205992	54205992	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385127	+1	known	NULL	0.002	154	0%	99	32.3%	0	-	-	-	-	-
MIR520C	574476	genome.wustl.edu	37	19	54210781	54210781	+	RNA	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385005	+1	known	NULL	0.004	162	0%	163	24.5%	0	-	-	-	-	-
MIR517B	574483	genome.wustl.edu	37	19	54224374	54224374	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385102	+1	known	NULL	0.056	403	0%	359	29.2%	0	-	-	-	-	-
LILRB3	11025	genome.wustl.edu	37	19	54722664	54722664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081450.1	-1	reviewed	p.E490D	0.000	93	0%	79	31.6%	5	0%	benign(0.039)	tolerated(0.67)	neutral(0.005)	NULL
LILRA6	79168	genome.wustl.edu	37	19	54744415	54744415	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024318.2	-1	validated	p.P331	0.001	103	0%	91	13.2%	3	0%	-	-	-	HMMSmart_IG,superfamily_SSF48726
LILRB5	10990	genome.wustl.edu	37	19	54759153	54759153	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081442.1	-1	reviewed	p.I316	0.832	39	0%	27	25.9%	6	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
LILRB2	10288	genome.wustl.edu	37	19	54782725	54782725	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005874.3	-1	reviewed	p.A299	0.000	41	0%	44	29.5%	3	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
LILRA3	11026	genome.wustl.edu	37	19	54803070	54803070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006865.3	-1	validated	p.R203C	0.000	217	0%	186	35.5%	3	0%	possibly_damaging(0.732)	deleterious(0.01)	deleterious(0.673)	superfamily_SSF48726
KIR3DX1	90011	genome.wustl.edu	37	19	55046933	55046933	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000335056	+1	known	p.Q160*	0.000	143	0%	110	27.3%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
LILRA2	11027	genome.wustl.edu	37	19	55085561	55085561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130917.1	+1	validated	p.R18M	0.000	170	0%	104	33.7%	0	-	possibly_damaging(0.76)	tolerated(0.09)	deleterious(0.578)	NULL
LILRA2	11027	genome.wustl.edu	37	19	55086445	55086445	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001130917.1	+1	validated	p.S200	0.000	210	0%	120	30.8%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
KIR2DL4	3805	genome.wustl.edu	37	19	55316319	55316319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080770.1	+1	reviewed	p.R50W	0.000	270	0%	272	33.8%	0	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KIR3DL1	3811	genome.wustl.edu	37	19	55329963	55329963	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013289.2	+1	reviewed	p.A88	0.000	351	0%	409	31.5%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCAR	2204	genome.wustl.edu	37	19	55399546	55399546	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002000.2	+1	reviewed	p.F178	0.022	67	0%	67	31.3%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
NLRP7	199713	genome.wustl.edu	37	19	55445041	55445041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127255.1	-1	reviewed	p.K846N	0.023	131	0%	136	30.1%	0	-	benign(0.026)	deleterious(0.03)	neutral(0.365)	HMMSmart_SM00368,superfamily_RNI-like
NLRP7	199713	genome.wustl.edu	37	19	55450266	55450266	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127255.1	-1	reviewed	p.E641*	0.000	155	0%	156	25.6%	1	0%	-	-	-	superfamily_RNI-like
NLRP7	199713	genome.wustl.edu	37	19	55450294	55450294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127255.1	-1	reviewed	p.E631D	0.674	136	0%	147	37.4%	0	-	benign(0.079)	tolerated(0.28)	neutral(0.037)	superfamily_RNI-like
NLRP7	199713	genome.wustl.edu	37	19	55451755	55451755	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127255.1	-1	reviewed	p.D144E	0.000	459	0%	393	34.6%	0	-	benign(0.02)	tolerated(1)	neutral(0.001)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TNNI3	7137	genome.wustl.edu	37	19	55663261	55663261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000363.4	-1	reviewed	p.R192C	1.000	127	0%	124	25%	32	28.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56243505	56243505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176820.2	-1	reviewed	p.F564L	0.056	209	0%	279	29%	0	-	benign(0.041)	tolerated(0.85)	neutral(0.003)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56244303	56244303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176820.2	-1	reviewed	p.F298L	0.122	299	0%	325	29.2%	0	-	benign(0.018)	tolerated(0.31)	neutral(0.028)	HMMPfam_NACHT
NLRP11	204801	genome.wustl.edu	37	19	56300736	56300736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145007.3	-1	validated	p.I848T	0.000	374	0%	300	30%	0	-	benign(0.382)	tolerated(0.25)	neutral(0.159)	HMMSmart_SM00368,superfamily_RNI-like
NLRP11	204801	genome.wustl.edu	37	19	56320643	56320643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145007.3	-1	validated	p.R445C	0.000	263	0%	180	31.7%	0	-	benign(0.015)	tolerated(0.32)	neutral(0.025)	NULL
NLRP11	204801	genome.wustl.edu	37	19	56321075	56321075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145007.3	-1	validated	p.S301P	0.000	164	0%	153	28.8%	0	-	probably_damaging(0.998)	tolerated(0.27)	deleterious(0.508)	HMMPfam_NACHT
NLRP8	126205	genome.wustl.edu	37	19	56466904	56466904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176811.2	+1	provisional	p.R494W	0.002	273	0.4%	221	35.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NLRP8	126205	genome.wustl.edu	37	19	56467186	56467186	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176811.2	+1	provisional	p.L588	0.003	143	0%	124	29.8%	0	-	-	-	-	NULL
NLRP5	126206	genome.wustl.edu	37	19	56538555	56538555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153447.4	+1	reviewed	p.L319P	0.108	31	0%	21	42.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NACHT,superfamily_SSF52540
NLRP5	126206	genome.wustl.edu	37	19	56569737	56569737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153447.4	+1	reviewed	p.S1144L	0.001	59	0%	68	20.6%	0	-	possibly_damaging(0.602)	tolerated(0.11)	deleterious(0.480)	superfamily_SSF52047
ZNF582	147948	genome.wustl.edu	37	19	56895244	56895244	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144690.1	-1	provisional	p.S514	0.000	172	0.6%	228	28.5%	0	-	-	-	-	NULL
ZNF582	147948	genome.wustl.edu	37	19	56896125	56896125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144690.1	-1	provisional	p.H221N	0.974	184	0%	214	29%	1	0%	benign(0.389)	deleterious(0)	deleterious(0.569)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF667	63934	genome.wustl.edu	37	19	56952997	56952997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022103.3	-1	validated	p.S456L	0.009	140	0%	108	35.2%	0	-	possibly_damaging(0.829)	deleterious(0)	deleterious(0.759)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF471	57573	genome.wustl.edu	37	19	57036956	57036956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020813.2	+1	validated	p.R507I	1.000	162	0%	166	67.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF470	388566	genome.wustl.edu	37	19	57085793	57085793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001668.3	+1	validated	p.D31Y	0.997	235	0%	225	27.6%	0	-	possibly_damaging(0.901)	deleterious(0.03)	deleterious(0.722)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF470	388566	genome.wustl.edu	37	19	57088227	57088227	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001668.3	+1	validated	p.L144V	0.000	117	0%	135	31.1%	1	0%	possibly_damaging(0.882)	tolerated(0.29)	neutral(0.373)	NULL
ZNF470	388566	genome.wustl.edu	37	19	57088960	57088960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001668.3	+1	validated	p.R388Q	0.023	152	0%	144	28.5%	1	100%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF835	90485	genome.wustl.edu	37	19	57174989	57174989	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005850.1	-1	provisional	p.C548	0.000	76	0%	58	37.9%	2	0%	-	-	-	NULL
PEG3	5178	genome.wustl.edu	37	19	57325628	57325628	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006210.2	-1	reviewed	p.A1394	1.000	268	0%	259	28.6%	0	-	-	-	-	NULL
PEG3	5178	genome.wustl.edu	37	19	57326930	57326930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006210.2	-1	reviewed	p.Q960H	0.000	437	0%	413	29.8%	0	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
PEG3	5178	genome.wustl.edu	37	19	57335808	57335808	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006210.2	-1	reviewed	p.L72	0.779	156	0%	134	32.1%	0	-	-	-	-	HMMPfam_SCAN,HMMSmart_SM00431
PEG3	5178	genome.wustl.edu	37	19	57335876	57335876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006210.2	-1	reviewed	p.R50W	0.999	120	0%	112	28.6%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_SCAN,HMMSmart_SM00431
USP29	57663	genome.wustl.edu	37	19	57641656	57641656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020903.2	+1	validated	p.S538Y	0.947	242	0%	258	29.1%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_UCH,superfamily_SSF54001
ZIM3	114026	genome.wustl.edu	37	19	57647398	57647398	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052882.1	-1	provisional	p.E103*	0.007	350	0%	350	32%	0	-	-	-	-	NULL
DUXA	503835	genome.wustl.edu	37	19	57666692	57666692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012729.1	-1	validated	p.E163K	0.012	92	0%	89	28.1%	0	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	HMMSmart_HOX,superfamily_Homeodomain_like
DUXA	503835	genome.wustl.edu	37	19	57672135	57672135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012729.1	-1	validated	p.R19H	0.086	142	0.7%	125	30.4%	0	-	benign(0.148)	deleterious(0)	neutral(0.458)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ZNF264	9422	genome.wustl.edu	37	19	57723370	57723370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003417.4	+1	reviewed	p.F302C	0.963	135	0%	100	26%	1	100%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF460	10794	genome.wustl.edu	37	19	57802704	57802704	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006635.3	+1	validated	p.S265	0.000	164	0%	118	33.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF460	10794	genome.wustl.edu	37	19	57802833	57802833	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006635.3	+1	validated	p.F308	0.000	181	0%	170	37.6%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF543	125919	genome.wustl.edu	37	19	57840299	57840299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_213598.3	+1	validated	p.R490H	0.261	149	0%	115	35.7%	3	33.3%	probably_damaging(1)	tolerated(0.55)	deleterious(0.507)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF304	57343	genome.wustl.edu	37	19	57868009	57868009	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020657.2	+1	validated	p.N258H	0.865	214	0.5%	185	28.1%	0	-	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF304	57343	genome.wustl.edu	37	19	57868238	57868238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020657.2	+1	validated	p.S334Y	0.003	252	0%	226	28.3%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_C2H2 and C2HC zinc fingers
ZNF304	57343	genome.wustl.edu	37	19	57868301	57868301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020657.2	+1	validated	p.R355K	0.922	293	0%	232	31.5%	0	-	possibly_damaging(0.775)	tolerated(0.22)	neutral(0.330)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF547	284306	genome.wustl.edu	37	19	57888615	57888615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173631.2	+1	validated	p.T91A	0.004	253	0%	184	33.2%	0	-	benign(0.21)	tolerated(0.08)	neutral(0.321)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF548	147694	genome.wustl.edu	37	19	57908451	57908451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152909.3	+1	validated	p.F17L	0.993	1454	0.1%	1662	8.6%	5	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF548	147694	genome.wustl.edu	37	19	57908517	57908517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152909.3	+1	validated	p.E39D	0.990	1651	0.1%	1822	30%	5	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF17	7565	genome.wustl.edu	37	19	57932571	57932571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006959.2	+1	validated	p.R571W	0.000	207	0%	194	35.6%	2	50%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288507	100288507	genome.wustl.edu	37	19	57955686	57955686	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343700.1	-1	model	p.E230*	0.110	529	0%	442	25.8%	0	-	benign(0.158)	tolerated(0.07)	neutral(0.333)	NULL
ZNF749	388567	genome.wustl.edu	37	19	57956327	57956327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001023561.2	+1	provisional	p.R604I	0.001	568	0%	413	29.3%	1	100%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF773	374928	genome.wustl.edu	37	19	58018469	58018470	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198542.1	+1	provisional	p.C336fs	0.990:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF773	374928	genome.wustl.edu	37	19	58024419	58024419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000332030	+1	known	p.E136K	0.066	29	0%	39	23.1%	0	-	possibly_damaging(0.539)	deleterious(0)	deleterious(0.627)	NULL
ZNF549	256051	genome.wustl.edu	37	19	58050005	58050005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153263.1	+1	provisional	p.L532I	0.000	205	0%	170	24.1%	1	100%	benign(0.025)	tolerated(1)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF550	162972	genome.wustl.edu	37	19	58067653	58067653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039654.1	-1	provisional	p.R25G	0.999	181	0%	134	29.9%	0	-	possibly_damaging(0.491)	deleterious(0)	deleterious(0.608)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZIK1	284307	genome.wustl.edu	37	19	58102303	58102303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010879.2	+1	provisional	p.G375E	1.000	236	0%	259	31.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
ZIK1	284307	genome.wustl.edu	37	19	58102389	58102389	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010879.2	+1	provisional	p.E404*	1.000	235	0%	268	24.3%	0	-	-	-	-	superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
ZNF530	348327	genome.wustl.edu	37	19	58118052	58118052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020880.3	+1	validated	p.A387T	0.000	329	0%	339	33.3%	0	-	benign(0.052)	tolerated(0.38)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF134	7693	genome.wustl.edu	37	19	58131631	58131631	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003435.3	+1	provisional	p.T48	0.000	200	0%	195	26.2%	1	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF134	7693	genome.wustl.edu	37	19	58131904	58131904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003435.3	+1	provisional	p.K139N	0.000	183	0.5%	150	32.7%	3	66.6%	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	superfamily_C2H2 and C2HC zinc fingers
ZNF551	90233	genome.wustl.edu	37	19	58198578	58198578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138347.3	+1	validated	p.R296H	0.997	319	0.3%	307	28%	1	0%	probably_damaging(1)	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF551	90233	genome.wustl.edu	37	19	58199270	58199270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138347.3	+1	validated	p.R527C	0.000	324	0%	305	15.1%	3	0%	benign(0.075)	tolerated(0.09)	neutral(0.301)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF154	7710	genome.wustl.edu	37	19	58213615	58213615	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085384.1	-1	validated	p.K234	0.143	484	0%	355	31.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF154	7710	genome.wustl.edu	37	19	58213673	58213673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085384.1	-1	validated	p.R215Q	0.001	435	0.5%	323	33.4%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_SSF57667
ZNF154	7710	genome.wustl.edu	37	19	58213859	58213859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001085384.1	-1	validated	p.R153I	0.038	632	0%	432	28.7%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	superfamily_SSF57667
ZNF776	284309	genome.wustl.edu	37	19	58264652	58264652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000431353	+1	known	p.F57L	0.028	152	0%	142	31%	0	-	benign(0.009)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF814	730051	genome.wustl.edu	37	19	58388404	58388404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144989.1	-1	validated	p.V15L	0.308	333	0%	335	13.7%	0	-	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF417	147687	genome.wustl.edu	37	19	58420580	58420580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152475.2	-1	validated	p.E356K	0.012	633	0%	597	24.3%	1	0%	benign(0.129)	tolerated(0.06)	neutral(0.334)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF417	147687	genome.wustl.edu	37	19	58420810	58420810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152475.2	-1	validated	p.R279Q	0.000	550	0.2%	520	21.3%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF417	147687	genome.wustl.edu	37	19	58421196	58421196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152475.2	-1	validated	p.K150N	0.000	562	0%	533	19.3%	0	-	benign(0.071)	tolerated(0.41)	neutral(0.020)	NULL
ZNF418	147686	genome.wustl.edu	37	19	58441838	58441838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133460.1	-1	provisional	p.H31Y	0.000	197	0%	190	27.9%	0	-	benign(0.337)	tolerated(1)	neutral(0.106)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF256	10172	genome.wustl.edu	37	19	58453101	58453101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005773.2	-1	validated	p.S359P	0.000	268	0%	317	24.9%	0	-	probably_damaging(0.989)	tolerated(0.22)	deleterious(0.481)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C19orf18	147685	genome.wustl.edu	37	19	58477985	58477985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152474.4	-1	predicted	p.R95I	0.957	44	0%	55	29.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ZNF606	80095	genome.wustl.edu	37	19	58490033	58490033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025027.3	-1	validated	p.R672I	1.000	288	0%	272	36%	0	-	possibly_damaging(0.909)	deleterious(0.02)	deleterious(0.745)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF606	80095	genome.wustl.edu	37	19	58490338	58490338	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025027.3	-1	validated	p.C570	0.024	216	0%	229	26.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF606	80095	genome.wustl.edu	37	19	58491088	58491088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025027.3	-1	validated	p.K320N	1.000	266	0%	241	23.2%	1	0%	benign(0.123)	tolerated(0.71)	neutral(0.011)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF135	7694	genome.wustl.edu	37	19	58578103	58578103	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000511556	+1	known	p.L96R	0.995	87	0%	78	29.5%	0	-	probably_damaging(0.983)	tolerated(0.15)	deleterious(0.670)	NULL
ZSCAN18	65982	genome.wustl.edu	37	19	58601483	58601483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145542.1	-1	validated	p.R107H	0.982	27	0%	34	41.2%	26	30.7%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_SCAN,HMMSmart_SCAN
ZSCAN18	65982	genome.wustl.edu	37	19	58601532	58601532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145542.1	-1	validated	p.E91K	0.000	39	0%	29	13.8%	32	53.1%	benign(0.008)	tolerated(0.35)	neutral(0.021)	NULL
ZNF329	79673	genome.wustl.edu	37	19	58639305	58639305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024620.3	-1	validated	p.K522N	0.013	123	0%	117	31.6%	1	0%	benign(0.005)	tolerated(0.33)	neutral(0.024)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF329	79673	genome.wustl.edu	37	19	58639565	58639565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024620.3	-1	validated	p.F436L	1.000	91	0%	74	29.7%	1	0%	possibly_damaging(0.914)	deleterious(0.01)	deleterious(0.772)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF329	79673	genome.wustl.edu	37	19	58639834	58639834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024620.3	-1	validated	p.S346N	0.002	101	0%	102	27.5%	2	0%	possibly_damaging(0.918)	tolerated(1)	neutral(0.368)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF329	79673	genome.wustl.edu	37	19	58640035	58640035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024620.3	-1	validated	p.R279I	1.000	137	0%	124	29%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF274	10782	genome.wustl.edu	37	19	58724115	58724115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000424679	+1	known	p.S522Y	0.005	217	0%	195	25.1%	11	54.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF8	7554	genome.wustl.edu	37	19	58806637	58806637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021089.2	+1	validated	p.T488I	0.815	239	0%	255	34.1%	0	-	benign(0.05)	tolerated(1)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZSCAN22	342945	genome.wustl.edu	37	19	58850058	58850058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181846.2	+1	validated	p.S281L	0.000	259	0.4%	284	34.2%	1	0%	possibly_damaging(0.915)	tolerated(0.06)	deleterious(0.689)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF584	201514	genome.wustl.edu	37	19	58928828	58928828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173548.1	+1	provisional	p.L315F	0.000	175	0%	207	24.2%	10	20%	probably_damaging(0.97)	tolerated(0.05)	deleterious(0.758)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF132	7691	genome.wustl.edu	37	19	58944929	58944929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003433.3	-1	validated	p.E628K	0.002	183	0%	202	21.8%	0	-	probably_damaging(0.974)	tolerated(0.77)	neutral(0.417)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF324B	388569	genome.wustl.edu	37	19	58966543	58966543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000391696	+1	known	p.R68C	0.015	149	0%	154	20.8%	0	-	probably_damaging(0.99)	-	-	NULL
ZNF324B	388569	genome.wustl.edu	37	19	58967899	58967899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207395.2	+1	validated	p.R530C	0.002	58	0%	75	25.3%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TRIM28	10155	genome.wustl.edu	37	19	59060514	59060514	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005762.2	+1	reviewed	p.E523	0.801	51	0%	56	19.6%	401	44.6%	-	-	-	NULL
C20orf96	140680	genome.wustl.edu	37	20	258993	258993	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153269.1	-1	predicted	p.E181D	0.449	122	0%	72	12.5%	15	40%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	NULL
CSNK2A1	1457	genome.wustl.edu	37	20	485767	485767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001895.3	-1	reviewed	p.L70I	1.000	63	0%	46	30.4%	38	44.7%	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC52A3	113278	genome.wustl.edu	37	20	744162	744162	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033409.3	-1	validated	p.V351	0.968	38	0%	28	35.7%	7	0%	-	-	-	HMMPfam_DUF1011
SIRPB2	284759	genome.wustl.edu	37	20	1460374	1460374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122962.1	-1	validated	p.S141L	0.000	308	0%	343	35.9%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIRPB1	10326	genome.wustl.edu	37	20	1546801	1546801	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006065.3	-1	reviewed	p.*399W	0.261	19	0%	19	36.8%	0	-	-	-	-	NULL
SIRPG	55423	genome.wustl.edu	37	20	1629760	1629760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018556.3	-1	reviewed	p.R123Q	0.146	177	0%	208	40.4%	2	0%	benign(0.154)	tolerated(0.9)	neutral(0.013)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TGM3	7053	genome.wustl.edu	37	20	2291017	2291017	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003245.3	+1	reviewed	p.S125	0.000	331	0%	276	30.4%	0	-	-	-	-	superfamily_E set domains
ZNF343	79175	genome.wustl.edu	37	20	2473384	2473384	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024325.4	-1	validated	p.E89*	0.113	253	0%	228	13.2%	2	50%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
PTPRA	5786	genome.wustl.edu	37	20	2998526	2998526	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002836.3	+1	reviewed	p.I336	0.955	93	0%	67	40.3%	32	34.3%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
ENSG00000250798	0	genome.wustl.edu	37	20	3127235	3127235	+	RNA	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000502279	+1	novel	NULL	0.000	52	0%	62	32.3%	4	50%	-	-	-	-
FASTKD5	60493	genome.wustl.edu	37	20	3128745	3128745	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021826.4	-1	validated	p.G324	0.025	136	0%	173	30.6%	6	50%	-	-	-	NULL
ATRN	8455	genome.wustl.edu	37	20	3520891	3520891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_139321.2	+1	reviewed	p.R173C	1.000	655	0.2%	579	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SIGLEC1	6614	genome.wustl.edu	37	20	3686998	3686998	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_023068.3	-1	reviewed	p.V135	0.966	39	0%	30	13.3%	2	50%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MAVS	57506	genome.wustl.edu	37	20	3842924	3842924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000416600	+1	known	p.R105H	0.000	50	0%	62	32.3%	10	50%	benign(0.014)	tolerated(0.66)	neutral(0.003)	NULL
PANK2	80025	genome.wustl.edu	37	20	3899406	3899406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153638.2	+1	reviewed	p.S542F	1.000	486	0%	396	29.8%	32	53.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
PRND	23627	genome.wustl.edu	37	20	4705387	4705387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012409.2	+1	reviewed	p.R64C	0.544	45	0%	52	21.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Prion,superfamily_Prion-like
PRNT	149830	genome.wustl.edu	37	20	4713300	4713300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000326539	-1	known	p.F8C	0.002	62	0%	48	33.3%	0	-	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
SLC23A2	9962	genome.wustl.edu	37	20	4893568	4893568	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005116.5	-1	reviewed	p.E55	1.000	133	0%	66	33.3%	2	0%	-	-	-	NULL
PROKR2	128674	genome.wustl.edu	37	20	5294790	5294790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144773.2	-1	reviewed	p.A76T	0.991	122	0%	79	26.6%	0	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_7tm_1,superfamily_SSF81321
FERMT1	55612	genome.wustl.edu	37	20	6057985	6057985	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017671.4	-1	reviewed	p.I623	0.945	64	0%	56	44.6%	11	36.3%	-	-	-	NULL
PLCB1	23236	genome.wustl.edu	37	20	8689378	8689378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015192.2	+1	reviewed	p.S410L	1.000	229	0%	223	30%	4	50%	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
PLCB4	5332	genome.wustl.edu	37	20	9402041	9402041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000933.3	+1	reviewed	p.R739Q	1.000	107	0%	100	37%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
PLCB4	5332	genome.wustl.edu	37	20	9417795	9417795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000933.3	+1	reviewed	p.K908N	1.000	46	0%	47	27.7%	1	0%	benign(0.097)	tolerated(0.47)	neutral(0.018)	NULL
PAK7	57144	genome.wustl.edu	37	20	9538371	9538371	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020341.3	-1	reviewed	p.E543*	1.000	165	0%	162	35.8%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ANKRD5	63926	genome.wustl.edu	37	20	10030294	10030294	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022096.4	+1	validated	p.F359	0.413	128	0%	116	32.8%	4	50%	-	-	-	superfamily_Ankyrin repeat,superfamily_EF-hand
SNAP25	6616	genome.wustl.edu	37	20	10280034	10280034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003081.2	+1	reviewed	p.R176C	1.000	158	0%	156	31.4%	0	-	possibly_damaging(0.836)	deleterious(0.01)	deleterious(0.725)	HMMPfam_SNARE,HMMSmart_SM00397
MKKS	8195	genome.wustl.edu	37	20	10393555	10393555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018848.2	-1	reviewed	p.P203H	0.981	157	0%	134	28.4%	19	63.1%	possibly_damaging(0.793)	tolerated(0.57)	neutral(0.304)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
BTBD3	22903	genome.wustl.edu	37	20	11900456	11900456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014962.2	+1	validated	p.E170K	1.000	126	0%	82	29.3%	22	40.9%	possibly_damaging(0.858)	deleterious(0.01)	deleterious(0.737)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
BTBD3	22903	genome.wustl.edu	37	20	11903589	11903589	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014962.2	+1	validated	p.E282*	1.000	172	0%	142	27.5%	14	42.8%	-	-	-	NULL
SPTLC3	55304	genome.wustl.edu	37	20	13140729	13140729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018327.2	+1	validated	p.R499W	0.929	117	0%	85	36.5%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ISM1	140862	genome.wustl.edu	37	20	13260508	13260508	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080826.1	+1	validated	p.G202	1.000	57	0%	63	31.7%	1	0%	-	-	-	NULL
FLRT3	23767	genome.wustl.edu	37	20	14307036	14307036	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013281.2	-1	reviewed	p.T373P	1.000	212	0%	234	27.4%	3	100%	possibly_damaging(0.687)	tolerated(0.07)	deleterious(0.565)	NULL
MACROD2	140733	genome.wustl.edu	37	20	15210605	15210605	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080676.5	+1	validated	p.G146	0.204	118	0%	88	13.6%	0	-	-	-	-	HMMPfam_Macro,HMMSmart_A1pp,superfamily_SSF52949
KIF16B	55614	genome.wustl.edu	37	20	16352354	16352354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024704.3	-1	validated	p.R1135C	0.201	136	0%	113	35.4%	1	0%	benign(0.154)	deleterious(0.02)	neutral(0.397)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16359971	16359971	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024704.3	-1	validated	p.F892	0.001	403	0%	483	32.1%	0	-	-	-	-	NULL
KIF16B	55614	genome.wustl.edu	37	20	16360032	16360032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024704.3	-1	validated	p.S872Y	0.000	470	0%	597	33.2%	0	-	possibly_damaging(0.68)	tolerated(0.42)	neutral(0.257)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16474989	16474989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024704.3	-1	validated	p.E417K	1.000	139	0%	73	23.3%	0	-	unknown(0)	tolerated(0.32)	-	NULL
KIF16B	55614	genome.wustl.edu	37	20	16506812	16506812	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024704.3	-1	validated	p.R52	0.994	359	0%	292	26.7%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
RRBP1	6238	genome.wustl.edu	37	20	17639257	17639257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042576.1	-1	reviewed	p.K202N	1.000	134	0%	149	30.9%	100	33%	possibly_damaging(0.44)	deleterious(0.02)	deleterious(0.526)	NULL
DZANK1	55184	genome.wustl.edu	37	20	18393497	18393497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000377630	-1	known	p.P242S	0.404	175	0%	186	34.9%	0	-	benign(0.139)	tolerated(0.62)	neutral(0.016)	NULL
SEC23B	10483	genome.wustl.edu	37	20	18523695	18523695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006363.4	+1	reviewed	p.I515T	1.000	178	0%	125	28.8%	80	46.2%	possibly_damaging(0.596)	deleterious(0)	deleterious(0.650)	superfamily_SSF81995
SLC24A3	57419	genome.wustl.edu	37	20	19261725	19261725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020689.3	+1	validated	p.E89K	0.353	98	0%	71	26.8%	2	0%	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
NAA20	51126	genome.wustl.edu	37	20	20006351	20006351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016100.3	+1	validated	p.A37T	1.000	410	0%	280	33.6%	75	52%	benign(0.009)	tolerated(0.3)	neutral(0.029)	superfamily_Acyl-CoA N-acyltransferases (Nat)
C20orf26	26074	genome.wustl.edu	37	20	20209006	20209006	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000431753	+1	known	p.R222K	1.000	231	0%	183	28.4%	0	-	-	-	-	NULL
C20orf26	26074	genome.wustl.edu	37	20	20232258	20232258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015585.3	+1	validated	p.D727N	1.000	136	0%	137	26.3%	0	-	possibly_damaging(0.799)	tolerated(0.64)	neutral(0.304)	superfamily_FAD/NAD(P)-binding domain
RALGAPA2	57186	genome.wustl.edu	37	20	20373781	20373781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000334388	-1	known	p.R1750C	0.000	21	0%	18	38.9%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20493273	20493273	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430436	-1	known	p.S1397L	0.000	129	0%	97	20.6%	5	0%	-	-	-	superfamily_Rap/Ran-GAP (Pfam 02145)
RALGAPA2	57186	genome.wustl.edu	37	20	20493523	20493523	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430436	-1	known	p.R1314*	0.119	182	0%	177	35%	4	75%	benign(0.046)	tolerated(0.13)	neutral(0.255)	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20553675	20553675	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430436	-1	known	p.S732L	0.936	33	0%	25	32%	0	-	-	-	-	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20601239	20601239	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000430436	-1	known	p.Q240R	1.000	92	0%	101	27.7%	2	50%	-	-	-	NULL
XRN2	22803	genome.wustl.edu	37	20	21312980	21312980	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012255.3	+1	reviewed	p.E254*	1.000	97	0%	83	26.5%	11	0%	-	-	-	HMMPfam_XRN_N
PAX1	5075	genome.wustl.edu	37	20	21687454	21687454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006192.3	+1	validated	p.R222H	1.000	25	0%	21	19%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_PAX,HMMSmart_SM00351
CD93	22918	genome.wustl.edu	37	20	23065114	23065114	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012072.3	-1	reviewed	p.N572	0.000	80	0%	44	31.8%	6	0%	-	-	-	NULL
CD93	22918	genome.wustl.edu	37	20	23066201	23066201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012072.3	-1	reviewed	p.S210F	0.887	47	0%	39	28.2%	5	0%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
CSTL1	128817	genome.wustl.edu	37	20	23421109	23421109	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138283.1	+1	reviewed	p.R69*	0.013	337	0%	232	34.9%	0	-	-	-	-	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
CST9L	128821	genome.wustl.edu	37	20	23546648	23546648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080610.2	-1	reviewed	p.D106G	0.335	293	0%	165	30.9%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Cystatin,superfamily_Cystatin/monellin
CST2	1470	genome.wustl.edu	37	20	23805937	23805937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001322.2	-1	reviewed	p.F84L	0.000	154	0%	124	21.8%	7	0%	probably_damaging(0.997)	tolerated(0.4)	deleterious(0.482)	HMMPfam_Cystatin,HMMSmart_CY,PatternScan_CYSTATIN,superfamily_SSF54403
CST5	1473	genome.wustl.edu	37	20	23856862	23856862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001900.4	-1	reviewed	p.K131T	0.000	133	0%	116	22.4%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_CY,superfamily_SSF54403
C20orf3	57136	genome.wustl.edu	37	20	24954335	24954335	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020531.2	-1	validated	p.K123Q	1.000	109	0.9%	120	31.7%	83	51.8%	probably_damaging(0.966)	tolerated(0.06)	deleterious(0.730)	superfamily_Calcium-dependent phosphotriesterase
ACSS1	84532	genome.wustl.edu	37	20	24988532	24988532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032501.2	-1	reviewed	p.R646W	1.000	87	0%	64	21.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Acetyl-CoA synthetase-like
ENTPD6	955	genome.wustl.edu	37	20	25201886	25201886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001247.2	+1	reviewed	p.L321S	0.996	25	0%	22	22.7%	27	25.9%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_GDA1_CD39
GINS1	9837	genome.wustl.edu	37	20	25405956	25405956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021067.3	+1	validated	p.Y147S	1.000	206	0%	168	29.2%	4	75%	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	HMMPfam_Psf1
NINL	22981	genome.wustl.edu	37	20	25434140	25434140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025176.4	-1	validated	p.R1366C	0.000	200	0%	143	27.3%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NINL	22981	genome.wustl.edu	37	20	25459651	25459651	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000336104	-1	known	p.P5S	0.001	27	0%	34	47.1%	0	-	-	-	-	NULL
NINL	22981	genome.wustl.edu	37	20	25459711	25459711	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025176.4	-1	validated	p.H683	0.000	39	0%	24	37.5%	0	-	-	-	-	NULL
NINL	22981	genome.wustl.edu	37	20	25507072	25507072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025176.4	-1	validated	p.T51M	0.961	219	0%	189	30.7%	2	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_SSF47473
DEFB119	245932	genome.wustl.edu	37	20	29965114	29965114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153289.2	-1	validated	p.S64R	0.199	353	0%	355	31.5%	0	-	possibly_damaging(0.722)	deleterious(0.02)	deleterious(0.645)	NULL
REM1	28954	genome.wustl.edu	37	20	30064324	30064324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014012.4	+1	reviewed	p.R26W	0.000	127	0%	103	40.8%	4	0%	possibly_damaging(0.95)	tolerated(0.07)	deleterious(0.713)	NULL
REM1	28954	genome.wustl.edu	37	20	30070155	30070155	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014012.4	+1	reviewed	p.I163	1.000	37	0%	47	36.2%	0	-	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TTLL9	164395	genome.wustl.edu	37	20	30530752	30530752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000375922	+1	known	p.R317C	0.000	323	0%	288	29.9%	1	100%	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMPfam_TTL
HCK	3055	genome.wustl.edu	37	20	30689174	30689174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002110.3	+1	reviewed	p.R478H	0.504	56	0%	67	26.9%	34	0%	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
POFUT1	23509	genome.wustl.edu	37	20	30816070	30816070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015352.1	+1	reviewed	p.S183A	1.000	60	0%	56	37.5%	21	38%	benign(0.027)	deleterious(0.01)	neutral(0.407)	HMMPfam_O-FucT
KIF3B	9371	genome.wustl.edu	37	20	30918113	30918113	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004798.2	+1	reviewed	p.S713C	1.000	62	0%	101	15.8%	3	0%	benign(0.165)	tolerated(0.05)	neutral(0.360)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31021424	31021424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015338.5	+1	reviewed	p.D475N	0.000	192	0%	152	31.6%	5	60%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31023108	31023108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015338.5	+1	reviewed	p.E865K	0.000	298	0%	203	31%	7	28.5%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
COMMD7	149951	genome.wustl.edu	37	20	31294409	31294409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053041.2	-1	validated	p.E104D	1.000	152	0%	189	29.6%	67	40.2%	probably_damaging(0.987)	tolerated(0.38)	neutral(0.454)	HMMPfam_HCaRG
DNMT3B	1789	genome.wustl.edu	37	20	31375143	31375143	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006892.3	+1	reviewed	p.T180	0.001	81	0%	79	27.8%	4	25%	-	-	-	NULL
SUN5	140732	genome.wustl.edu	37	20	31583471	31583471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080675.3	-1	validated	p.N163S	0.581	223	0%	240	23.7%	0	-	benign(0.01)	tolerated(0.17)	neutral(0.059)	NULL
SUN5	140732	genome.wustl.edu	37	20	31590715	31590715	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080675.3	-1	validated	p.R30*	0.008	49	0%	33	27.3%	0	-	-	-	-	NULL
BPIFB6	128859	genome.wustl.edu	37	20	31627288	31627288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174897.2	+1	validated	p.R346W	0.000	156	0%	178	25.3%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFB6	128859	genome.wustl.edu	37	20	31629805	31629805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174897.2	+1	validated	p.S391L	0.036	55	0%	63	27%	0	-	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFB4	149954	genome.wustl.edu	37	20	31671497	31671497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182519.2	+1	validated	p.A165V	0.913	49	0%	57	40.4%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
BPIFB4	149954	genome.wustl.edu	37	20	31676787	31676787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000445356	+1	known	p.S41L	0.846	350	0%	231	26.4%	0	-	unknown(0)	-	-	NULL
BPIFA3	128861	genome.wustl.edu	37	20	31814273	31814273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178466.3	+1	validated	p.L200I	0.779	80	0%	87	31%	0	-	benign(0.001)	tolerated(0.76)	neutral(0.001)	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI
E2F1	1869	genome.wustl.edu	37	20	32267703	32267703	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005225.2	-1	reviewed	p.S144R	1.000	67	0%	75	36%	31	51.6%	probably_damaging(0.996)	tolerated(0.17)	deleterious(0.520)	HMMPfam_E2F_TDP,superfamily_SSF46785
ZNF341	84905	genome.wustl.edu	37	20	32377368	32377368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032819.3	+1	validated	p.L663R	1.000	32	0%	24	37.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
EDEM2	55741	genome.wustl.edu	37	20	33725697	33725697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018217.2	-1	validated	p.R159Q	1.000	146	0%	122	29.5%	27	37%	benign(0.112)	tolerated(0.6)	neutral(0.013)	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases
SPAG4	6676	genome.wustl.edu	37	20	34208665	34208665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003116.1	+1	reviewed	p.E379D	1.000	161	0%	115	10.4%	16	6.2%	benign(0.066)	tolerated(0.84)	neutral(0.005)	HMMPfam_Sad1_UNC
RBM12	10137	genome.wustl.edu	37	20	34240708	34240708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006047.4	-1	reviewed	p.F846S	1.000	109	0%	98	28.6%	54	35.1%	unknown(0)	tolerated(0.1)	-	superfamily_RNA-binding domain RBD
RBM12	10137	genome.wustl.edu	37	20	34242500	34242500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006047.4	-1	reviewed	p.P249S	1.000	84	0%	112	31.2%	28	21.4%	unknown(0)	deleterious(0)	-	NULL
ROMO1	140823	genome.wustl.edu	37	20	34288760	34288760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080748.2	+1	validated	p.K58E	1.000	120	0%	72	34.7%	327	41.8%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Mit_gmP
TGIF2	60436	genome.wustl.edu	37	20	35219315	35219315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021809.5	+1	reviewed	p.I65M	0.997	244	0%	186	25.3%	15	20%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SLA2	84174	genome.wustl.edu	37	20	35242319	35242319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032214.2	-1	reviewed	p.S246R	0.998	70	0%	69	33.3%	1	0%	possibly_damaging(0.736)	deleterious(0.02)	deleterious(0.652)	NULL
SOGA1	140710	genome.wustl.edu	37	20	35434312	35434312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199181.2	-1	validated	p.N717H	0.521	62	0%	53	41.5%	0	-	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	NULL
KIAA1755	85449	genome.wustl.edu	37	20	36869944	36869944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001029864.1	-1	predicted	p.L197I	0.001	297	0%	265	29.4%	2	0%	possibly_damaging(0.47)	tolerated(0.07)	deleterious(0.474)	NULL
RALGAPB	57148	genome.wustl.edu	37	20	37179811	37179811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020336.2	+1	validated	p.P1036H	1.000	278	0%	250	12%	7	14.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SLC32A1	140679	genome.wustl.edu	37	20	37356616	37356616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080552.2	+1	reviewed	p.K304N	1.000	59	0%	43	46.5%	0	-	benign(0.081)	tolerated(0.33)	neutral(0.030)	HMMPfam_Aa_trans
DHX35	60625	genome.wustl.edu	37	20	37650523	37650523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021931.2	+1	reviewed	p.A513V	1.000	276	0%	239	29.7%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAFB	9935	genome.wustl.edu	37	20	39317284	39317284	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005461.3	-1	reviewed	p.S69	0.960	29	0%	24	33.3%	16	0%	-	-	-	NULL
TOP1	7150	genome.wustl.edu	37	20	39690051	39690051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003286.2	+1	reviewed	p.D26Y	1.000	116	0%	99	24.2%	30	46.6%	unknown(0)	deleterious(0.01)	-	NULL
TOP1	7150	genome.wustl.edu	37	20	39713125	39713125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003286.2	+1	reviewed	p.K177N	1.000	52	0%	40	40%	36	44.4%	benign(0.017)	tolerated(0.27)	neutral(0.034)	NULL
PLCG1	5335	genome.wustl.edu	37	20	39802358	39802358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002660.2	+1	reviewed	p.F1154C	1.000	279	0%	189	37%	24	20.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ZHX3	23051	genome.wustl.edu	37	20	39833310	39833310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015035.3	-1	reviewed	p.D83N	0.990	196	0%	176	26.7%	4	75%	benign(0.004)	tolerated(1)	-	HMMSmart_ZnF_C2H2
LPIN3	64900	genome.wustl.edu	37	20	39980721	39980721	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022896.1	+1	validated	p.R408	0.001	127	0%	83	38.6%	1	0%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40162038	40162038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032221.3	-1	reviewed	p.A69T	0.020	192	0%	188	31.9%	0	-	benign(0.022)	tolerated(0.08)	neutral(0.301)	NULL
PTPRT	11122	genome.wustl.edu	37	20	41306567	41306567	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133170.3	-1	reviewed	p.R364	0.970	135	0.7%	99	22.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRT	11122	genome.wustl.edu	37	20	41408895	41408895	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133170.3	-1	reviewed	p.I177	1.000	223	0%	194	32.5%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
L3MBTL1	26013	genome.wustl.edu	37	20	42157319	42157319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015478.5	+1	reviewed	p.C205*	0.644	67	0%	68	11.8%	0	-	-	-	-	superfamily_Tudor/PWWP/MBT
IFT52	51098	genome.wustl.edu	37	20	42225099	42225099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016004.2	+1	validated	p.E48D	1.000	140	0%	119	22.7%	11	27.2%	benign(0.141)	tolerated(0.64)	neutral(0.015)	NULL
MYBL2	4605	genome.wustl.edu	37	20	42343898	42343898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002466.2	+1	reviewed	p.R650Q	0.004	271	0%	213	32.9%	110	55.4%	benign(0.374)	tolerated(0.43)	neutral(0.133)	NULL
TOX2	84969	genome.wustl.edu	37	20	42683124	42683124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000372992	+1	known	p.S45L	0.073	130	0%	61	37.7%	2	0%	unknown(0)	-	-	NULL
C20orf111	51526	genome.wustl.edu	37	20	42825932	42825932	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016470.6	-1	provisional	p.E213D	0.996	151	0%	138	25.4%	43	46.5%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
GDAP1L1	78997	genome.wustl.edu	37	20	42893090	42893090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024034.3	+1	reviewed	p.K217N	1.000	56	0%	57	31.6%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	superfamily_Glutathione S-transferase (GST) C-terminal domain
HNF4A	3172	genome.wustl.edu	37	20	43034863	43034863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000457.3	+1	reviewed	p.Y94C	1.000	145	0.7%	138	29.7%	11	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
HNF4A	3172	genome.wustl.edu	37	20	43048506	43048506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000457.3	+1	reviewed	p.F294L	1.000	104	0%	91	30.8%	9	0%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TTPAL	79183	genome.wustl.edu	37	20	43108805	43108805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039199.1	+1	validated	p.R56*	0.998	88	0%	72	34.7%	4	25%	-	-	-	HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N
STK4	6789	genome.wustl.edu	37	20	43625831	43625831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006282.2	+1	reviewed	p.N239H	1.000	347	0%	232	37.1%	6	16.6%	benign(0.221)	deleterious(0.04)	neutral(0.371)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KCNS1	3787	genome.wustl.edu	37	20	43723662	43723662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002251.3	-1	reviewed	p.S477I	0.993	191	0%	109	36.7%	0	-	probably_damaging(0.983)	tolerated(0.2)	deleterious(0.478)	NULL
SEMG2	6407	genome.wustl.edu	37	20	43850992	43850992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003008.2	+1	reviewed	p.P240H	0.000	381	0.3%	311	29.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Semenogelin
MATN4	8785	genome.wustl.edu	37	20	43927205	43927205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003833.3	-1	reviewed	p.V344A	1.000	49	0%	47	34%	0	-	possibly_damaging(0.936)	tolerated(0.15)	deleterious(0.623)	HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF57196
RBPJL	11317	genome.wustl.edu	37	20	43942152	43942152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014276.2	+1	reviewed	p.R222C	1.000	95	0%	75	36%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Beta-trefoil,superfamily_Beta-trefoil
WFDC8	90199	genome.wustl.edu	37	20	44184400	44184400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130896.2	-1	reviewed	p.E129K	0.000	272	0.4%	212	29.2%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m
CTSA	5476	genome.wustl.edu	37	20	44520657	44520657	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000308.2	+1	reviewed	p.G117	0.997	37	0%	27	14.8%	150	31.3%	-	-	-	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
CTSA	5476	genome.wustl.edu	37	20	44521091	44521091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000308.2	+1	reviewed	p.D156N	0.000	61	0%	55	27.3%	160	30%	benign(0.099)	tolerated(0.3)	neutral(0.036)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
MMP9	4318	genome.wustl.edu	37	20	44642392	44642392	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004994.2	+1	reviewed	p.S569	0.031	37	0%	25	24%	385	0%	-	-	-	superfamily_Hemopexin-like domain,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120
SLC12A5	57468	genome.wustl.edu	37	20	44672541	44672541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001134771.1	+1	reviewed	p.A478T	1.000	147	0%	143	26.6%	0	-	benign(0.422)	deleterious(0)	deleterious(0.582)	HMMPfam_AA_permease
CD40	958	genome.wustl.edu	37	20	44757495	44757495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000372278	+1	known	p.G167S	0.000	35	0%	26	30.8%	0	-	unknown(0)	-	-	NULL
ELMO2	63916	genome.wustl.edu	37	20	44997547	44997547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133171.3	-1	reviewed	p.A649T	1.000	174	0%	165	29.1%	23	43.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_PH domain-like
ZNF334	55713	genome.wustl.edu	37	20	45129935	45129935	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018102.3	-1	validated	p.*681Y	0.044	182	0%	166	31.3%	0	-	-	-	-	NULL
ZNF334	55713	genome.wustl.edu	37	20	45130065	45130065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018102.3	-1	validated	p.R638H	0.000	218	0%	202	36.1%	0	-	probably_damaging(0.987)	tolerated(0.17)	deleterious(0.495)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NCOA3	8202	genome.wustl.edu	37	20	46267800	46267800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181659.2	+1	reviewed	p.R854Q	1.000	311	0%	265	27.5%	3	33.3%	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	NULL
NCOA3	8202	genome.wustl.edu	37	20	46281219	46281219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181659.2	+1	reviewed	p.R1339I	1.000	130	0%	141	12.1%	10	40%	benign(0.007)	deleterious(0.02)	neutral(0.383)	HMMPfam_DUF1518
PREX1	57580	genome.wustl.edu	37	20	47266704	47266704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020820.3	-1	reviewed	p.K953T	1.000	51	0%	42	26.2%	5	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PREX1	57580	genome.wustl.edu	37	20	47274736	47274736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020820.3	-1	reviewed	p.D638Y	0.998	136	0%	112	39.3%	1	0%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	"HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_""Winged helix"" DNA-binding domain"
PREX1	57580	genome.wustl.edu	37	20	47276498	47276498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020820.3	-1	reviewed	p.D614N	1.000	180	0%	158	33.5%	3	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	"superfamily_PDZ domain-like,superfamily_""Winged helix"" DNA-binding domain"
ARFGEF2	10564	genome.wustl.edu	37	20	47601346	47601346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006420.2	+1	reviewed	p.Q680R	1.000	219	0.5%	194	35.1%	0	-	benign(0.026)	tolerated(0.99)	neutral(0.001)	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47649603	47649603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006420.2	+1	reviewed	p.I1742S	1.000	40	0%	48	31.2%	13	53.8%	benign(0.045)	tolerated(0.09)	neutral(0.299)	NULL
CSE1L	1434	genome.wustl.edu	37	20	47707504	47707504	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001316.2	+1	reviewed	p.I770	1.000	161	0%	100	23%	117	43.5%	-	-	-	HMMPfam_CAS_CSE1,superfamily_ARM repeat
LOC100131544	100131544	genome.wustl.edu	37	20	47855483	47855483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001716051.1	-1	model	p.Q182K	0.000	42	0%	64	28.1%	0	-	unknown(0)	-	-	NULL
DDX27	55661	genome.wustl.edu	37	20	47859141	47859141	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017895.7	+1	reviewed	p.Q740	0.219	394	0.3%	401	24.7%	42	28.5%	-	-	-	NULL
ZNFX1	57169	genome.wustl.edu	37	20	47864311	47864311	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021035.2	-1	validated	p.S1750	0.995	234	0%	144	29.2%	5	20%	-	-	-	NULL
KCNB1	3745	genome.wustl.edu	37	20	47989645	47989645	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004975.2	-1	reviewed	p.E818*	1.000	165	0%	141	12.8%	0	-	-	-	-	NULL
KCNB1	3745	genome.wustl.edu	37	20	47990436	47990436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004975.2	-1	reviewed	p.S554N	0.998	234	0%	204	28.9%	0	-	benign(0.003)	tolerated(0.24)	neutral(0.037)	HMMPfam_Kv2channel
SLC9A8	23315	genome.wustl.edu	37	20	48503378	48503378	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015266.1	+1	validated	p.F527	0.971	47	0%	30	26.7%	6	16.6%	-	-	-	NULL
PTPN1	5770	genome.wustl.edu	37	20	49197812	49197812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002827.2	+1	reviewed	p.D367Y	1.000	38	0%	33	33.3%	28	21.4%	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	NULL
FAM65C	140876	genome.wustl.edu	37	20	49218960	49218960	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080829.2	-1	predicted	p.F432	0.000	57	0%	48	25%	0	-	-	-	-	NULL
BCAS4	55653	genome.wustl.edu	37	20	49493049	49493049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017843.3	+1	validated	p.V205I	0.000	91	0%	67	37.3%	13	53.8%	unknown(0)	tolerated(0.32)	-	NULL
NFATC2	4773	genome.wustl.edu	37	20	50007935	50007935	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173091.2	-1	reviewed	p.*926Q	1.000	231	0%	174	28.2%	3	0%	-	-	-	NULL
NFATC2	4773	genome.wustl.edu	37	20	50051821	50051821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173091.2	-1	reviewed	p.R646W	1.000	298	0.3%	262	15.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
NFATC2	4773	genome.wustl.edu	37	20	50139752	50139752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173091.2	-1	reviewed	p.R343H	0.979	92	0%	110	45.5%	0	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50292678	50292678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006045.1	-1	validated	p.R290Q	0.710	179	0%	202	23.8%	6	0%	benign(0.239)	tolerated(0.08)	neutral(0.324)	NULL
SALL4	57167	genome.wustl.edu	37	20	50407730	50407730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020436.3	-1	reviewed	p.R431Q	1.000	67	0%	71	28.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF217	7764	genome.wustl.edu	37	20	52193292	52193292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006526.2	-1	validated	p.A671T	0.000	224	0%	239	24.7%	6	33.3%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
CBLN4	140689	genome.wustl.edu	37	20	54573752	54573752	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080617.4	-1	reviewed	p.V156G	1.000	273	0%	216	27.8%	0	-	probably_damaging(1)	tolerated(0.59)	deleterious(0.504)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
FAM209A	200232	genome.wustl.edu	37	20	55100881	55100881	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012971.3	+1	validated	p.R91*	0.005	222	0%	209	26.8%	0	-	-	-	-	NULL
RAE1	8480	genome.wustl.edu	37	20	55948729	55948729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001015885.1	+1	reviewed	p.N254D	1.000	349	0%	355	25.4%	57	45.6%	possibly_damaging(0.755)	deleterious(0.05)	deleterious(0.624)	HMMSmart_SM00320,superfamily_WD40 repeat-like
HMGB1P1	10357	genome.wustl.edu	37	20	56063451	56063452	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000452924	-1	known	p.211in_frame_insD	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CTCFL	140690	genome.wustl.edu	37	20	56098278	56098278	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080618.2	-1	reviewed	p.L200	0.000	56	0%	43	25.6%	0	-	-	-	-	NULL
PCK1	5105	genome.wustl.edu	37	20	56136617	56136617	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002591.3	+1	reviewed	p.E50	1.000	84	0%	63	23.8%	1	0%	-	-	-	HMMPfam_PEPCK,superfamily_PEP_carboxykinase_N
PCK1	5105	genome.wustl.edu	37	20	56138122	56138122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002591.3	+1	reviewed	p.T217A	1.000	54	0%	48	33.3%	0	-	possibly_damaging(0.841)	deleterious(0.03)	deleterious(0.686)	HMMPfam_PEPCK,superfamily_PEP_carboxykinase_N
ZBP1	81030	genome.wustl.edu	37	20	56188259	56188259	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030776.2	-1	validated	p.H210	0.000	92	0%	65	35.4%	0	-	-	-	-	NULL
ZBP1	81030	genome.wustl.edu	37	20	56191336	56191336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030776.2	-1	validated	p.G75C	0.001	95	0%	72	45.8%	2	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
VAPB	9217	genome.wustl.edu	37	20	56993359	56993359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004738.3	+1	reviewed	p.R51G	0.936	141	0%	117	29.9%	18	27.7%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Motile_Sperm,superfamily_PapD-like
GNAS	2778	genome.wustl.edu	37	20	57415482	57415482	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016592.2	+1	reviewed	p.F107	0.865	35	0%	34	38.2%	0	-	-	-	-	HMMPfam_NESP55
GNAS	2778	genome.wustl.edu	37	20	57485443	57485443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080425.2	+1	reviewed	p.R985Q	1.000	101	0%	92	26.1%	2092	43.4%	possibly_damaging(0.747)	tolerated(0.4)	neutral(0.290)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
PHACTR3	116154	genome.wustl.edu	37	20	58318216	58318216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080672.3	+1	reviewed	p.R58Q	0.984	84	0%	72	26.4%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
PHACTR3	116154	genome.wustl.edu	37	20	58416501	58416501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080672.3	+1	reviewed	p.R500*	1.000	89	0%	97	29.9%	0	-	-	-	-	HMMSmart_SM00707
SYCP2	10388	genome.wustl.edu	37	20	58456508	58456508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014258.2	-1	reviewed	p.D900N	0.977	27	0%	20	35%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58467167	58467167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014258.2	-1	reviewed	p.D748Y	0.998	295	0%	286	28.7%	0	-	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	NULL
CDH26	60437	genome.wustl.edu	37	20	58547086	58547086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177980.2	+1	reviewed	p.P101T	0.998	180	0%	153	17.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CA,superfamily_Cadherin
CDH26	60437	genome.wustl.edu	37	20	58562670	58562670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_177980.2	+1	reviewed	p.E334K	0.755	94	0%	94	40.4%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TAF4	6874	genome.wustl.edu	37	20	60575748	60575748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003185.3	-1	reviewed	p.S839L	0.992	99	0%	87	36.8%	7	28.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_TAF4
TCFL5	10732	genome.wustl.edu	37	20	61491491	61491491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006602.2	-1	validated	p.L273I	0.002	65	0%	78	28.2%	6	50%	benign(0.019)	tolerated(0.24)	neutral(0.038)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61538602	61538602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033081.1	-1	reviewed	p.A424V	0.992	203	0%	171	26.9%	31	48.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
KCNQ2	3785	genome.wustl.edu	37	20	62073804	62073804	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_172107.2	-1	reviewed	p.E257	1.000	155	0%	129	27.9%	186	33.8%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
C20orf195	79025	genome.wustl.edu	37	20	62187763	62187763	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024059.2	+1	predicted	p.P249	0.001	56	0%	57	22.8%	1	100%	-	-	-	superfamily_FN_III-like
ARFRP1	10139	genome.wustl.edu	37	20	62337720	62337720	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003224.3	-1	reviewed	p.L85	0.987	27	0%	23	17.4%	33	21.2%	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARFRP1	10139	genome.wustl.edu	37	20	62338074	62338074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003224.3	-1	reviewed	p.S37L	1.000	23	0%	27	33.3%	24	45.8%	benign(0)	tolerated(0.98)	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYT1	4661	genome.wustl.edu	37	20	62839225	62839225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004535.2	+1	reviewed	p.E226K	0.729	33	0%	32	28.1%	1	0%	benign(0.244)	tolerated(0.13)	neutral(0.277)	NULL
TPTE	7179	genome.wustl.edu	37	21	10942760	10942760	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199261.2	-1	validated	p.K227	0.999	974	0%	863	13.6%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
TPTE	7179	genome.wustl.edu	37	21	10942976	10942976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_199261.2	-1	validated	p.R204I	1.000	357	0%	306	14.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
RBM11	54033	genome.wustl.edu	37	21	15599384	15599384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144770.3	+1	validated	p.L206F	0.981	389	0%	330	34.5%	0	-	probably_damaging(0.991)	tolerated(1)	neutral(0.444)	NULL
HSPA13	6782	genome.wustl.edu	37	21	15746117	15746117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006948.4	-1	reviewed	p.R413W	0.956	179	0%	143	30.8%	15	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_Actin-like ATPase domain
HSPA13	6782	genome.wustl.edu	37	21	15746523	15746523	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006948.4	-1	reviewed	p.F277	0.018	79	1.3%	76	32.9%	6	16.6%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
SAMSN1	64092	genome.wustl.edu	37	21	15882719	15882719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022136.3	-1	validated	p.G158D	0.134	248	0%	274	24.1%	5	0%	benign(0.025)	tolerated(0.07)	neutral(0.320)	superfamily_SH3-domain
USP25	29761	genome.wustl.edu	37	21	17203950	17203950	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013396.3	+1	validated	e16+2	1.000	128	0%	105	30.5%	0	-	-	-	-	-
C21orf91	54149	genome.wustl.edu	37	21	19169013	19169013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001100420.1	-1	validated	p.R184C	0.834	290	0%	252	32.9%	6	33.3%	possibly_damaging(0.909)	tolerated(0.19)	neutral(0.411)	HMMPfam_EURL
TMPRSS15	5651	genome.wustl.edu	37	21	19651339	19651339	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002772.2	-1	reviewed	p.Q902H	0.707	69	0%	49	28.6%	0	-	probably_damaging(0.996)	tolerated(0.23)	deleterious(0.503)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TMPRSS15	5651	genome.wustl.edu	37	21	19775824	19775824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002772.2	-1	reviewed	p.S39F	0.993	269	0%	281	23.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NCAM2	4685	genome.wustl.edu	37	21	22849623	22849623	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004540.2	+1	reviewed	p.E636D	1.000	106	0%	86	22.1%	0	-	possibly_damaging(0.753)	tolerated(0.32)	neutral(0.301)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
NCAM2	4685	genome.wustl.edu	37	21	22881273	22881273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004540.2	+1	reviewed	p.R727W	0.999	160	0%	140	31.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
MRPL39	54148	genome.wustl.edu	37	21	26978859	26978859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080794.3	-1	reviewed	p.R61Q	0.996	104	1%	94	27.7%	50	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JAM2	58494	genome.wustl.edu	37	21	27074552	27074552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021219.2	+1	reviewed	p.R223H	1.000	55	0%	46	21.7%	3	0%	benign(0.071)	tolerated(0.13)	neutral(0.258)	superfamily_SSF48726
N6AMT1	29104	genome.wustl.edu	37	21	30255311	30255311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013240.3	-1	reviewed	p.Y73H	1.000	352	0%	264	29.5%	12	33.3%	probably_damaging(0.966)	deleterious(0.04)	deleterious(0.757)	HMMPfam_MTS,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
USP16	10600	genome.wustl.edu	37	21	30426135	30426135	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001032410.1	+1	reviewed	p.E736*	1.000	339	0%	206	16%	29	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
BACH1	571	genome.wustl.edu	37	21	30698828	30698828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001186.2	+1	reviewed	p.R228I	1.000	417	0%	322	28.6%	4	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
BACH1	571	genome.wustl.edu	37	21	30698986	30698986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001186.2	+1	reviewed	p.E281K	0.714	350	0%	322	27%	1	100%	benign(0.244)	tolerated(0.17)	neutral(0.083)	NULL
GRIK1	2897	genome.wustl.edu	37	21	30934110	30934110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000830.3	-1	reviewed	p.A731T	0.997	63	0%	61	34.4%	0	-	possibly_damaging(0.578)	deleterious(0.02)	deleterious(0.582)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
CLDN17	26285	genome.wustl.edu	37	21	31538294	31538294	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012131.2	-1	reviewed	p.T214	0.000	206	0%	138	25.4%	0	-	-	-	-	NULL
CLDN17	26285	genome.wustl.edu	37	21	31538928	31538928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012131.2	-1	reviewed	p.F3C	1.000	159	0%	128	35.9%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
KRTAP13-2	337959	genome.wustl.edu	37	21	31744460	31744460	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181621.3	-1	validated	p.S24	0.118	398	0%	411	14.4%	0	-	-	-	-	HMMPfam_PMG
KRTAP13-1	140258	genome.wustl.edu	37	21	31768574	31768574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181599.2	+1	validated	p.Q57P	0.004	138	0%	157	38.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PMG
KRTAP13-1	140258	genome.wustl.edu	37	21	31768727	31768727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181599.2	+1	validated	p.R108H	0.002	130	0%	139	24.5%	0	-	benign(0.005)	tolerated(0.63)	neutral(0.004)	HMMPfam_PMG
KRTAP15-1	254950	genome.wustl.edu	37	21	31812740	31812740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181623.1	+1	provisional	p.S32N	0.252	260	0%	203	31%	0	-	possibly_damaging(0.85)	tolerated(0.12)	deleterious(0.588)	HMMPfam_PMG
KRTAP19-5	337972	genome.wustl.edu	37	21	31874332	31874332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181611.1	-1	provisional	p.G26D	0.998	330	0%	394	24.4%	0	-	unknown(0)	-	-	NULL
KRTAP19-6	337973	genome.wustl.edu	37	21	31914087	31914087	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181612.2	-1	provisional	p.G22	0.005	364	0%	324	33.6%	0	-	-	-	-	NULL
KRTAP21-1	337977	genome.wustl.edu	37	21	32127679	32127679	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181619.1	-1	provisional	p.Y6	0.130	426	0%	414	27.1%	0	-	-	-	-	NULL
KRTAP11-1	337880	genome.wustl.edu	37	21	32253690	32253690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175858.2	-1	validated	p.L52F	1.000	121	0%	112	30.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PMG
TIAM1	7074	genome.wustl.edu	37	21	32496950	32496950	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000423206	-1	known	p.E54*	1.000	81	0%	65	24.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PH domain-like
TIAM1	7074	genome.wustl.edu	37	21	32513671	32513671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000399841	-1	known	p.G1049R	0.000	73	0%	81	38.3%	1	0%	benign(0.205)	-	-	HMMSmart_SM00325
TIAM1	7074	genome.wustl.edu	37	21	32525453	32525453	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003253.2	-1	validated	e15-1	1.000	214	0%	173	25.4%	0	-	-	-	-	-
TIAM1	7074	genome.wustl.edu	37	21	32624490	32624490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003253.2	-1	validated	p.E327K	1.000	289	0%	140	30.7%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
TIAM1	7074	genome.wustl.edu	37	21	32638928	32638928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003253.2	-1	validated	p.A121T	1.000	82	0%	121	27.3%	0	-	possibly_damaging(0.692)	tolerated(0.09)	deleterious(0.544)	NULL
SCAF4	57466	genome.wustl.edu	37	21	33043945	33043945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020706.2	-1	reviewed	p.E1071K	1.000	351	0%	307	27.4%	27	37%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
SCAF4	57466	genome.wustl.edu	37	21	33064723	33064723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020706.2	-1	reviewed	p.R518I	1.000	113	0%	75	28%	10	30%	unknown(0)	deleterious(0.02)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
C21orf63	59271	genome.wustl.edu	37	21	33876299	33876299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058187.3	+1	validated	p.S308F	0.829	160	0%	174	27.6%	7	42.8%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34018782	34018782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003895.3	-1	validated	p.I1056M	0.000	366	0.3%	299	25.8%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34029206	34029206	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003895.3	-1	validated	p.V862	0.054	114	0%	111	39.6%	1	0%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SYNJ1	8867	genome.wustl.edu	37	21	34058062	34058062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003895.3	-1	validated	p.Q372K	0.998	166	0%	162	34.6%	1	0%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
GCFC1	94104	genome.wustl.edu	37	21	34109696	34109696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016631.3	-1	reviewed	p.Q835H	1.000	226	0%	167	33.5%	4	100%	probably_damaging(0.983)	tolerated(0.13)	deleterious(0.681)	HMMPfam_GCFC
GCFC1	94104	genome.wustl.edu	37	21	34127649	34127649	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016631.3	-1	reviewed	p.E467*	1.000	200	0%	138	26.1%	4	0%	-	-	-	HMMPfam_GCFC
C21orf62	56245	genome.wustl.edu	37	21	34166107	34166107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000479548	-1	known	p.S209I	0.459	158	0%	173	13.3%	0	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	NULL
C21orf62	56245	genome.wustl.edu	37	21	34166515	34166515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000479548	-1	known	p.R73Q	0.000	159	0%	181	27.1%	0	-	benign(0.224)	tolerated(0.57)	neutral(0.028)	NULL
IFNAR2	3455	genome.wustl.edu	37	21	34619145	34619145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207585.1	+1	reviewed	p.G115E	0.269	59	0%	72	30.6%	13	15.3%	possibly_damaging(0.627)	tolerated(0.53)	neutral(0.226)	superfamily_Fibronectin type III
IFNAR2	3455	genome.wustl.edu	37	21	34635606	34635606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207585.1	+1	reviewed	p.S450L	0.000	480	0%	360	15.6%	2	0%	possibly_damaging(0.646)	tolerated(0.11)	deleterious(0.498)	NULL
IFNAR1	3454	genome.wustl.edu	37	21	34707841	34707841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000629.2	+1	reviewed	p.L30I	0.000	108	0%	71	31%	8	62.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GART	2618	genome.wustl.edu	37	21	34876557	34876557	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000819.4	-1	reviewed	p.V969	0.908	107	0%	126	34.9%	77	40.2%	-	-	-	HMMPfam_Formyl_trans_N,superfamily_Formyltransferase
SON	6651	genome.wustl.edu	37	21	34922131	34922131	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138927.1	+1	reviewed	p.E198	0.988	131	0%	96	16.7%	2	0%	-	-	-	NULL
SON	6651	genome.wustl.edu	37	21	34926095	34926095	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138927.1	+1	reviewed	p.K1520Q	1.000	47	0%	38	26.3%	17	29.4%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
SON	6651	genome.wustl.edu	37	21	34926369	34926369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138927.1	+1	reviewed	p.G1611D	0.976	84	0%	122	59.8%	26	42.3%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
SON	6651	genome.wustl.edu	37	21	34927209	34927209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138927.1	+1	reviewed	p.R1891H	0.998	80	0%	68	30.9%	35	37.1%	unknown(0)	deleterious(0)	-	NULL
ITSN1	6453	genome.wustl.edu	37	21	35093522	35093522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003024.2	+1	reviewed	p.A23V	1.000	199	0%	175	11.4%	5	0%	unknown(0)	tolerated(0.12)	-	HMMSmart_SM00027,superfamily_EF-hand
ITSN1	6453	genome.wustl.edu	37	21	35195906	35195906	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003024.2	+1	reviewed	p.G1044	1.000	183	0%	136	26.5%	7	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CLIC6	54102	genome.wustl.edu	37	21	36081069	36081069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053277.1	+1	reviewed	p.A561V	1.000	129	0%	120	31.7%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_Glutathione S-transferase (GST) C-terminal domain
SETD4	54093	genome.wustl.edu	37	21	37416218	37416218	+	Missense_Mutation	SNP	C	C	T	rs146928359	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017438.3	-1	validated	p.E255K	1.000	111	0%	77	29.9%	16	43.7%	possibly_damaging(0.827)	deleterious(0.02)	deleterious(0.697)	HMMPfam_SET,superfamily_SET domain
DOPEY2	9980	genome.wustl.edu	37	21	37586445	37586445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005128.2	+1	validated	p.S324L	0.261	130	1.5%	135	34.8%	1	100%	benign(0.004)	tolerated(0.05)	neutral(0.345)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37617399	37617399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005128.2	+1	validated	p.A1041T	0.206	36	0%	34	35.3%	0	-	benign(0.042)	tolerated(0.13)	neutral(0.255)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37617941	37617941	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005128.2	+1	validated	p.V1221	0.000	46	0%	46	26.1%	5	40%	-	-	-	NULL
MORC3	23515	genome.wustl.edu	37	21	37705952	37705952	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015358.2	+1	reviewed	p.P16	0.998	161	0%	135	25.2%	2	0%	-	-	-	NULL
MORC3	23515	genome.wustl.edu	37	21	37706008	37706008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015358.2	+1	reviewed	p.E35G	1.000	153	0%	122	28.7%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HATPase_c,superfamily_ATP_bd_ATPase
DSCR3	10311	genome.wustl.edu	37	21	38600084	38600084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000309117	-1	known	p.D228N	1.000	33	0%	13	46.2%	24	20.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Vps26
DSCR4	10281	genome.wustl.edu	37	21	39493329	39493329	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000398948	-1	known	p.T7	0.023	50	0%	46	13%	0	-	-	-	-	NULL
KCNJ15	3772	genome.wustl.edu	37	21	39671657	39671657	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002243.3	+1	reviewed	p.I158	1.000	162	0%	138	25.4%	1	0%	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set,superfamily_SSF81324
ERG	2078	genome.wustl.edu	37	21	39774533	39774533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136154.1	-1	validated	p.D214Y	1.000	98	0%	80	36.2%	1	0%	possibly_damaging(0.539)	deleterious(0)	deleterious(0.627)	NULL
ERG	2078	genome.wustl.edu	37	21	39817414	39817414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136154.1	-1	validated	p.R57H	0.752	54	0%	65	10.8%	1	0%	probably_damaging(0.968)	tolerated(0.32)	neutral(0.434)	NULL
BRWD1	54014	genome.wustl.edu	37	21	40568921	40568921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018963.3	-1	reviewed	p.N2025S	0.000	240	0%	270	29.3%	2	50%	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40569214	40569214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018963.3	-1	reviewed	p.I1927M	0.108	127	0%	126	22.2%	2	0%	benign(0.152)	deleterious(0.02)	neutral(0.397)	superfamily_WD40 repeat-like
SH3BGR	6450	genome.wustl.edu	37	21	40834347	40834347	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007341.2	+1	validated	p.K94I	1.000	201	0%	147	23.8%	4	50%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_SH3BGR,superfamily_Thiordxn-like_fd
B3GALT5	10317	genome.wustl.edu	37	21	41032798	41032798	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006057.1	+1	reviewed	p.A104	0.000	223	0%	260	34.2%	0	-	-	-	-	HMMPfam_Galactosyl_T
DSCAM	1826	genome.wustl.edu	37	21	41414430	41414430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001389.3	-1	validated	p.N1852H	1.000	136	0%	90	33.3%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41427745	41427745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001389.3	-1	validated	p.T1648A	0.989	229	0%	180	35.6%	0	-	benign(0.33)	deleterious(0.01)	deleterious(0.509)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41465735	41465735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001389.3	-1	validated	p.R1255C	0.920	45	0%	65	33.8%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
BACE2	25825	genome.wustl.edu	37	21	42615305	42615305	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012105.3	+1	reviewed	p.V250	0.995	124	0%	137	15.3%	12	0%	-	-	-	HMMPfam_Asp,superfamily_Acid proteases
MX2	4600	genome.wustl.edu	37	21	42780140	42780140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002463.1	+1	reviewed	p.S710A	0.044	108	0%	122	37.7%	6	0%	benign(0.036)	tolerated(1)	neutral(0.002)	NULL
ZNF295	49854	genome.wustl.edu	37	21	43411722	43411722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098402.1	-1	validated	p.S828F	0.000	144	0%	135	31.9%	2	0%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
UMODL1	89766	genome.wustl.edu	37	21	43531740	43531740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173568.3	+1	validated	p.R803Q	0.000	40	0%	40	22.5%	0	-	benign(0.009)	tolerated(0.98)	neutral(0.001)	NULL
UMODL1	89766	genome.wustl.edu	37	21	43536042	43536042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173568.3	+1	validated	p.R936C	0.000	96	0%	78	33.3%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_SEA
UMODL1	89766	genome.wustl.edu	37	21	43546494	43546494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173568.3	+1	validated	p.D1191N	0.982	122	0%	126	32.5%	0	-	possibly_damaging(0.537)	tolerated(1)	neutral(0.181)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ABCG1	9619	genome.wustl.edu	37	21	43716442	43716442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004915.3	+1	reviewed	p.F659L	0.946	143	0%	85	27.1%	38	28.9%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
TMPRSS3	64699	genome.wustl.edu	37	21	43802210	43802210	+	Missense_Mutation	SNP	C	C	T	rs181949335	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024022.2	-1	reviewed	p.A306T	1.000	96	0%	121	29.8%	29	51.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RSPH1	89765	genome.wustl.edu	37	21	43913094	43913094	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080860.2	-1	validated	p.F50	0.010	382	0%	448	34.4%	1	0%	-	-	-	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
PKNOX1	5316	genome.wustl.edu	37	21	44427619	44427619	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004571.3	+1	validated	p.L24	1.000	196	0%	192	32.8%	7	57.1%	-	-	-	NULL
U2AF1	7307	genome.wustl.edu	37	21	44524486	44524486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001025203.1	-1	reviewed	p.I24T	1.000	79	0%	52	25%	194	40.7%	benign(0.333)	tolerated(0.29)	neutral(0.134)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
HSF2BP	11077	genome.wustl.edu	37	21	45050317	45050317	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007031.1	-1	reviewed	p.F154V	1.000	179	0%	109	29.4%	4	0%	possibly_damaging(0.633)	tolerated(0.08)	deleterious(0.521)	superfamily_ARM repeat
RRP1B	23076	genome.wustl.edu	37	21	45106712	45106712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015056.2	+1	validated	p.A346V	0.472	86	0%	78	11.5%	11	0%	benign(0.132)	tolerated(0.18)	neutral(0.067)	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45483619	45483619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003274.4	+1	reviewed	p.A331T	1.000	124	0%	143	30.8%	4	25%	benign(0.372)	tolerated(0.49)	neutral(0.129)	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45496479	45496479	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003274.4	+1	reviewed	p.S449	0.005	118	0%	93	25.8%	0	-	-	-	-	NULL
TRPM2	7226	genome.wustl.edu	37	21	45810910	45810910	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003307.3	+1	reviewed	e10+2	0.996	53	0%	74	17.6%	0	-	-	-	-	-
TRPM2	7226	genome.wustl.edu	37	21	45821664	45821664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003307.3	+1	reviewed	p.A808T	0.721	14	0%	27	33.3%	1	0%	benign(0.003)	deleterious(0.04)	neutral(0.349)	NULL
LRRC3	81543	genome.wustl.edu	37	21	45876828	45876828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030891.3	+1	validated	p.E101K	1.000	26	0%	29	37.9%	0	-	benign(0.113)	tolerated(0.13)	neutral(0.262)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
KRTAP10-1	386677	genome.wustl.edu	37	21	45959458	45959458	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198691.2	-1	reviewed	p.V192	0.005	179	0%	229	16.2%	0	-	-	-	-	HMMPfam_Keratin_B2
TSPEAR	54084	genome.wustl.edu	37	21	45987772	45987772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144991.2	-1	provisional	p.R67H	0.067	96	0%	54	31.5%	0	-	possibly_damaging(0.815)	deleterious(0.03)	deleterious(0.672)	HMMSmart_SM00210
KRTAP10-6	386674	genome.wustl.edu	37	21	46012162	46012162	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198688.2	-1	validated	p.C68	0.295	340	0%	360	35.3%	0	-	-	-	-	NULL
ITGB2	3689	genome.wustl.edu	37	21	46320325	46320325	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000211.3	-1	reviewed	p.F269	0.999	31	0%	16	31.2%	29	0%	-	-	-	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300
ITGB2	3689	genome.wustl.edu	37	21	46330268	46330268	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000211.3	-1	reviewed	p.T26	0.998	22	0%	27	18.5%	12	0%	unknown(0)	-	-	HMMSmart_PSI
ADARB1	104	genome.wustl.edu	37	21	46624512	46624512	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015833.3	+1	validated	p.F576	1.000	149	0%	116	33.6%	0	-	-	-	-	HMMPfam_A_deamin,HMMSmart_SM00552
PCBP3	54039	genome.wustl.edu	37	21	47319533	47319533	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020528.2	+1	reviewed	p.G62	0.975	33	0%	34	17.6%	0	-	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
PCNT	5116	genome.wustl.edu	37	21	47746338	47746338	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006031.5	+1	reviewed	p.S34	1.000	51	0%	83	37.3%	1	0%	-	-	-	NULL
PCNT	5116	genome.wustl.edu	37	21	47771348	47771348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006031.5	+1	reviewed	p.E450D	0.895	83	0%	67	31.3%	3	33.3%	probably_damaging(0.971)	tolerated(0.07)	deleterious(0.732)	NULL
XKR3	150165	genome.wustl.edu	37	22	17265006	17265006	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_175878.3	-1	validated	p.E295*	0.705	158	0%	181	32%	0	-	-	-	-	HMMPfam_XK-related
CECR2	27443	genome.wustl.edu	37	22	18020332	18020332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000400573	+1	known	p.S554L	0.421	94	0%	75	29.3%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
CECR2	27443	genome.wustl.edu	37	22	18028573	18028573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000400573	+1	known	p.R1177Q	1.000	84	0%	95	27.4%	0	-	possibly_damaging(0.657)	deleterious(0)	deleterious(0.676)	NULL
ATP6V1E1	529	genome.wustl.edu	37	22	18082836	18082836	+	Missense_Mutation	SNP	C	C	T	rs144829775	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001696.3	-1	reviewed	p.R131Q	0.986	200	0%	164	31.7%	146	48.6%	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMPfam_vATP-synt_E
MICAL3	57553	genome.wustl.edu	37	22	18301857	18301857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015241.2	-1	provisional	p.E1190D	0.000	10	0%	15	33.3%	2	100%	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
CLTCL1	8218	genome.wustl.edu	37	22	19226817	19226817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007098.3	-1	reviewed	p.D259G	1.000	302	0%	229	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain
CDC45	8318	genome.wustl.edu	37	22	19504063	19504063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003504.3	+1	reviewed	p.R485H	1.000	63	0%	26	38.5%	44	40.9%	possibly_damaging(0.766)	tolerated(0.08)	deleterious(0.584)	HMMPfam_CDC45
C22orf29	79680	genome.wustl.edu	37	22	19839077	19839077	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024627.5	-1	validated	p.A236	0.000	80	0%	52	38.5%	6	33.3%	-	-	-	NULL
PI4KA	5297	genome.wustl.edu	37	22	21097033	21097033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_058004.2	-1	reviewed	p.F1101C	1.000	124	0%	100	34%	4	0%	benign(0.006)	tolerated(0.1)	neutral(0.286)	NULL
SERPIND1	3053	genome.wustl.edu	37	22	21133856	21133856	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000185.3	+1	reviewed	p.F86V	0.024	112	0%	114	27.2%	0	-	benign(0.028)	deleterious(0.05)	neutral(0.347)	superfamily_Serpins,PatternScan_TONB_DEPENDENT_REC_1
CCDC116	164592	genome.wustl.edu	37	22	21988325	21988325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152612.2	+1	provisional	p.K29N	0.995	60	0%	70	31.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CCDC116	164592	genome.wustl.edu	37	22	21989345	21989345	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152612.2	+1	provisional	p.D331	0.020	36	0%	44	40.9%	1	100%	-	-	-	NULL
CCDC116	164592	genome.wustl.edu	37	22	21990805	21990805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152612.2	+1	provisional	p.R430C	0.013	39	0%	42	14.3%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
IGLV1-50	28821	genome.wustl.edu	37	22	22682067	22682067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390291	+1	known	p.F83L	1.000	504	0%	369	31.2%	0	-	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV3-27	28791	genome.wustl.edu	37	22	23011131	23011131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390304	+1	known	p.V65A	0.013	80	0%	72	30.6%	2	0%	benign(0.372)	deleterious(0.01)	deleterious(0.524)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV3-25	28793	genome.wustl.edu	37	22	23029638	23029638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390305	+1	known	p.F80L	1.000	197	0%	158	27.8%	211	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV3-1	28809	genome.wustl.edu	37	22	23223470	23223470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000390319	+1	known	p.F80L	0.999	103	0%	83	34.9%	42	0%	benign(0.036)	deleterious(0.01)	neutral(0.408)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
RTDR1	27156	genome.wustl.edu	37	22	23401823	23401823	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014433.2	-1	reviewed	p.A288	0.839	70	0%	74	25.7%	0	-	-	-	-	superfamily_ARM-type_fold
LOC649264	649264	genome.wustl.edu	37	22	23715903	23715903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001131286.2	-1	model	p.A69V	1.000	10	0%	12	41.7%	0	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
IGLL1	3543	genome.wustl.edu	37	22	23915556	23915556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020070.2	-1	reviewed	p.S180N	0.819	265	0%	273	25.6%	0	-	benign(0.009)	tolerated(0.17)	neutral(0.059)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
SPECC1L	23384	genome.wustl.edu	37	22	24718311	24718311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145468.1	+1	validated	p.K455Q	1.000	146	0%	121	33.9%	0	-	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
SPECC1L	23384	genome.wustl.edu	37	22	24726374	24726374	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145468.1	+1	validated	p.E791*	1.000	230	0%	211	32.7%	3	0%	-	-	-	NULL
FAM211B	388886	genome.wustl.edu	37	22	24982152	24982152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_207644.2	-1	validated	p.G217D	1.000	58	0%	50	34%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNI-like
PIWIL3	440822	genome.wustl.edu	37	22	25145713	25145713	+	Missense_Mutation	SNP	G	G	A	rs187027471	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008496.2	-1	validated	p.T388M	0.000	179	0%	152	17.1%	0	-	possibly_damaging(0.931)	tolerated(0.09)	deleterious(0.674)	HMMPfam_PAZ,superfamily_SSF101690
SGSM1	129049	genome.wustl.edu	37	22	25272641	25272641	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039948.2	+1	validated	p.G518	1.000	185	0%	188	36.7%	0	-	-	-	-	NULL
SGSM1	129049	genome.wustl.edu	37	22	25294017	25294017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039948.2	+1	validated	p.G756W	1.000	94	0%	90	30%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Ypt/Rab-GAP domain of gyp1p
ADRBK2	157	genome.wustl.edu	37	22	26074794	26074794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005160.3	+1	reviewed	p.K220T	1.000	163	0.6%	137	25.5%	0	-	benign(0.372)	deleterious(0)	deleterious(0.563)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
MYO18B	84700	genome.wustl.edu	37	22	26294398	26294398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032608.5	+1	reviewed	p.R1598Q	1.000	277	0%	259	30.9%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26400784	26400784	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032608.5	+1	reviewed	p.R2145*	0.975	279	0.4%	223	22%	0	-	-	-	-	NULL
MYO18B	84700	genome.wustl.edu	37	22	26423188	26423188	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032608.5	+1	reviewed	p.E2416	0.072	221	0%	178	24.7%	2	0%	-	-	-	NULL
CRYBA4	1413	genome.wustl.edu	37	22	27026309	27026309	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001886.2	+1	reviewed	p.V150G	1.000	37	0%	47	23.4%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
CHEK2	11200	genome.wustl.edu	37	22	29106013	29106013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005735.1	-1	reviewed	p.I319S	1.000	99	0%	99	24.2%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CCDC117	150275	genome.wustl.edu	37	22	29182220	29182220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173510.2	+1	validated	p.R249I	0.962	134	0%	145	29%	10	50%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
ZNRF3	84133	genome.wustl.edu	37	22	29383097	29383097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032173.2	+1	validated	p.E12K	0.996	177	0%	155	29%	3	66.6%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
RFPL1-AS1	10740	genome.wustl.edu	37	22	29833814	29833814	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NR_002727.2	-1	validated	NULL	0.001	35	0%	52	19.2%	0	-	-	-	-	-
NEFH	4744	genome.wustl.edu	37	22	29885034	29885034	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021076.3	+1	reviewed	p.E469*	1.000	116	0%	120	31.7%	0	-	-	-	-	NULL
THOC5	8563	genome.wustl.edu	37	22	29945057	29945057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002877.1	-1	validated	p.R27Q	0.915	94	0%	67	40.3%	6	83.3%	possibly_damaging(0.77)	deleterious(0.02)	deleterious(0.669)	NULL
NF2	4771	genome.wustl.edu	37	22	30069387	30069387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000268.3	+1	reviewed	p.R418C	0.986	27	0%	26	23.1%	21	52.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ERM
TBC1D10A	83874	genome.wustl.edu	37	22	30700583	30700583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031937.1	-1	provisional	p.R82S	1.000	139	0%	136	32.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ypt/Rab-GAP domain of gyp1p
OSBP2	23762	genome.wustl.edu	37	22	31091370	31091370	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030758.3	+1	reviewed	p.A158	0.033	38	0%	50	28%	1	0%	-	-	-	NULL
RNF185	91445	genome.wustl.edu	37	22	31600506	31600506	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152267.3	+1	validated	p.E171	0.984	128	0%	169	40.8%	8	50%	-	-	-	NULL
DRG1	4733	genome.wustl.edu	37	22	31816248	31816248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004147.3	+1	validated	p.R140Q	1.000	149	0%	132	28%	80	40%	possibly_damaging(0.59)	deleterious(0.01)	deleterious(0.610)	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SFI1	9814	genome.wustl.edu	37	22	32009187	32009187	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007467.1	+1	validated	p.F850	0.954	20	0%	12	50%	7	14.2%	possibly_damaging(0.741)	-	-	NULL
SFI1	9814	genome.wustl.edu	37	22	32009832	32009832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007467.1	+1	validated	p.A996V	0.000	12	0%	11	36.4%	19	42.1%	benign(0.031)	tolerated(0.56)	neutral(0.008)	NULL
ENSG00000251232	0	genome.wustl.edu	37	22	32015676	32015676	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000422296	-1	known	p.S554L	0.091	51	0%	42	19%	18	44.4%	-	-	-	HMMPfam_PS_Dcarbxylase
PRR14L	253143	genome.wustl.edu	37	22	32099640	32099640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173566.2	-1	validated	p.L1966F	0.986	87	0%	77	39%	3	66.6%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32198714	32198714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014662.2	+1	validated	p.R324H	1.000	226	0%	212	24.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32234731	32234731	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000433147	+1	known	p.T203A	1.000	214	0%	203	30.5%	2	50%	-	-	-	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32242861	32242861	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014662.2	+1	validated	p.I1012M	0.016	149	0%	160	26.9%	3	33.3%	possibly_damaging(0.51)	tolerated(0.15)	neutral(0.412)	NULL
SLC5A1	6523	genome.wustl.edu	37	22	32500874	32500874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000343.3	+1	reviewed	p.E589D	0.999	129	0%	89	34.8%	2	0%	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
RFPL3	10738	genome.wustl.edu	37	22	32756308	32756308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001098535.1	+1	validated	p.R148Q	0.084	121	0%	151	29.8%	0	-	probably_damaging(0.978)	tolerated(0.4)	neutral(0.436)	HMMSmart_PRY
BPIFC	254240	genome.wustl.edu	37	22	32831757	32831757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174932.2	-1	validated	p.F286L	1.000	102	0%	87	34.5%	0	-	probably_damaging(0.953)	tolerated(0.66)	neutral(0.399)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
TIMP3	7078	genome.wustl.edu	37	22	33254053	33254053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000362.4	+1	reviewed	p.E122D	1.000	142	0%	136	25%	54	0%	benign(0.167)	tolerated(0.49)	neutral(0.026)	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like
SYN3	8224	genome.wustl.edu	37	22	33260971	33260971	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003490.3	-1	reviewed	p.I214	1.000	357	0%	277	33.2%	0	-	-	-	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
HMGXB4	10042	genome.wustl.edu	37	22	35660647	35660647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003681.2	+1	validated	p.S89L	1.000	257	0%	227	26.4%	5	20%	possibly_damaging(0.915)	deleterious(0.04)	deleterious(0.716)	NULL
HMGXB4	10042	genome.wustl.edu	37	22	35661034	35661034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003681.2	+1	validated	p.A218V	0.072	262	0%	272	32.7%	9	33.3%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
MCM5	4174	genome.wustl.edu	37	22	35808620	35808620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006739.3	+1	reviewed	p.G346D	1.000	49	0%	47	34%	36	30.5%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
RBFOX2	23543	genome.wustl.edu	37	22	36205834	36205834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001082578.1	-1	reviewed	p.S152Y	1.000	696	0%	622	28.5%	18	27.7%	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
APOL3	80833	genome.wustl.edu	37	22	36537519	36537519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145640.2	-1	reviewed	p.R313Q	0.000	112	0%	143	41.3%	11	0%	benign(0.009)	tolerated(0.24)	neutral(0.038)	HMMPfam_ApoL
APOL2	23780	genome.wustl.edu	37	22	36624250	36624250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030882.2	-1	reviewed	p.D72N	0.000	301	0%	278	30.9%	21	0%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_ApoL
MYH9	4627	genome.wustl.edu	37	22	36718478	36718478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002473.4	-1	reviewed	p.R234H	1.000	37	0%	32	37.5%	105	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNG2	10369	genome.wustl.edu	37	22	37098568	37098568	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006078.2	-1	reviewed	p.F18	1.000	333	0%	350	33.7%	0	-	-	-	-	HMMPfam_PMP22_Claudin
CSF2RB	1439	genome.wustl.edu	37	22	37334138	37334138	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000395.2	+1	reviewed	p.F763C	0.018	62	0%	75	36%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
TEX33	339669	genome.wustl.edu	37	22	37398002	37398002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178552.3	-1	validated	p.G37D	0.000	69	0%	87	29.9%	0	-	possibly_damaging(0.768)	tolerated(0.52)	neutral(0.293)	NULL
CYTH4	27128	genome.wustl.edu	37	22	37690749	37690749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013385.3	+1	reviewed	p.E51K	0.515	96	2.1%	123	29.3%	3	0%	benign(0.028)	tolerated(0.09)	neutral(0.298)	NULL
ELFN2	114794	genome.wustl.edu	37	22	37770439	37770439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052906.3	-1	validated	p.T379M	1.000	33	0%	23	17.4%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MFNG	4242	genome.wustl.edu	37	22	37868527	37868527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002405.3	-1	reviewed	p.V285I	0.805	147	0%	111	20.7%	3	0%	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_Fringe
GGA1	26088	genome.wustl.edu	37	22	38014488	38014488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013365.4	+1	reviewed	p.R80W	0.996	14	0%	18	22.2%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
GGA1	26088	genome.wustl.edu	37	22	38019360	38019360	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013365.4	+1	reviewed	p.S212	0.508	50	0%	52	25%	19	42.1%	-	-	-	HMMPfam_GAT,superfamily_GAT-like domain
POLR2F	5435	genome.wustl.edu	37	22	38421981	38421981	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000333418	+1	known	p.E76*	0.008	159	0%	189	30.2%	0	-	unknown(0)	-	-	NULL
PLA2G6	8398	genome.wustl.edu	37	22	38516881	38516881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003560.2	-1	reviewed	p.R543C	1.000	42	0%	43	23.3%	4	25%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
PLA2G6	8398	genome.wustl.edu	37	22	38565402	38565402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003560.2	-1	reviewed	p.F11C	0.997	73	0%	74	32.4%	3	100%	possibly_damaging(0.678)	deleterious(0.02)	deleterious(0.625)	NULL
KDELR3	11015	genome.wustl.edu	37	22	38877514	38877514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016657.1	+1	reviewed	p.Y217H	0.000	122	0%	108	37%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
GTPBP1	9567	genome.wustl.edu	37	22	39117804	39117804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004286.4	+1	reviewed	p.A298T	1.000	117	0%	93	32.3%	17	29.4%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_GTP_EFTU,superfamily_SSF52540
GTPBP1	9567	genome.wustl.edu	37	22	39123306	39123306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004286.4	+1	reviewed	p.L497P	0.999	113	0%	89	30.3%	22	36.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C
GTPBP1	9567	genome.wustl.edu	37	22	39123307	39123307	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004286.4	+1	reviewed	p.L497	0.524	112	0%	88	30.7%	22	36.3%	-	-	-	HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C
APOBEC3B	9582	genome.wustl.edu	37	22	39382370	39382370	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004900.3	+1	reviewed	p.F174	0.000	335	0%	349	10.3%	25	12%	-	-	-	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
APOBEC3B	9582	genome.wustl.edu	37	22	39385526	39385526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004900.3	+1	reviewed	p.R212C	0.000	96	0%	91	29.7%	15	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_APOBEC_N
APOBEC3D	140564	genome.wustl.edu	37	22	39418971	39418971	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152426.3	+1	reviewed	p.V54	0.204	131	0.8%	131	37.4%	2	0%	-	-	-	HMMPfam_APOBEC_N
APOBEC3F	200316	genome.wustl.edu	37	22	39448629	39448629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145298.5	+1	validated	p.F351L	0.022	316	0%	385	30.1%	1	0%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
APOBEC3G	60489	genome.wustl.edu	37	22	39477586	39477586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021822.2	+1	reviewed	p.L193I	0.028	217	0%	144	34.7%	12	0%	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
RPL3	6122	genome.wustl.edu	37	22	39708972	39708972	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000967.3	-1	reviewed	p.D395E	1.000	81	0%	55	23.6%	3202	46.4%	benign(0.043)	tolerated(0.18)	neutral(0.059)	NULL
DNAJB7	150353	genome.wustl.edu	37	22	41257547	41257547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145174.1	-1	provisional	p.S151Y	0.163	168	0%	181	35.4%	0	-	possibly_damaging(0.87)	deleterious(0.01)	deleterious(0.744)	NULL
DNAJB7	150353	genome.wustl.edu	37	22	41257676	41257676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145174.1	-1	provisional	p.S108Y	0.960	176	0%	165	32.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_DnaJ_N
EP300	2033	genome.wustl.edu	37	22	41547839	41547839	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001429.3	+1	reviewed	p.L940	0.992	200	0%	202	27.7%	10	40%	-	-	-	NULL
L3MBTL2	83746	genome.wustl.edu	37	22	41620735	41620735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031488.4	+1	validated	p.R394Q	0.988	65	0%	71	40.8%	22	45.4%	possibly_damaging(0.948)	tolerated(0.26)	neutral(0.425)	HMMPfam_MBT,superfamily_Tudor/PWWP/MBT
MEI1	150365	genome.wustl.edu	37	22	42191507	42191507	+	Silent	SNP	G	G	A	rs147958692	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152513.3	+1	validated	p.S1209	0.000	60	0%	50	46%	4	0%	-	-	-	NULL
TCF20	6942	genome.wustl.edu	37	22	42607794	42607794	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005650.1	-1	reviewed	p.K1173T	0.998	224	0%	181	30.9%	14	28.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
TCF20	6942	genome.wustl.edu	37	22	42610329	42610329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005650.1	-1	reviewed	p.V328A	1.000	257	0%	234	26.9%	3	33.3%	benign(0.226)	tolerated(0.26)	neutral(0.057)	NULL
SERHL2	253190	genome.wustl.edu	37	22	42952554	42952554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014509.3	+1	provisional	p.L128R	0.974	442	0%	376	17%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
EFCAB6	64800	genome.wustl.edu	37	22	44063087	44063087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022785.2	-1	validated	p.K627T	0.000	229	0%	230	26.5%	0	-	benign(0.323)	deleterious(0.05)	neutral(0.447)	superfamily_EF-hand
PNPLA3	80339	genome.wustl.edu	37	22	44330508	44330508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025225.2	+1	reviewed	p.R240Q	0.180	37	0%	34	35.3%	0	-	possibly_damaging(0.451)	tolerated(1)	neutral(0.147)	NULL
PNPLA3	80339	genome.wustl.edu	37	22	44332931	44332931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_025225.2	+1	reviewed	p.G253D	1.000	55	0%	63	28.6%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
NUP50	10762	genome.wustl.edu	37	22	45580334	45580334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007172.3	+1	reviewed	p.G402D	1.000	103	0%	106	34%	20	75%	possibly_damaging(0.714)	tolerated(0.08)	deleterious(0.558)	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like
SMC1B	27127	genome.wustl.edu	37	22	45779399	45779399	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_148674.3	-1	validated	p.K669T	1.000	177	0%	188	37.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SMC_N,superfamily_SMC_hinge,superfamily_SSF52540
SMC1B	27127	genome.wustl.edu	37	22	45795181	45795181	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_148674.3	-1	validated	p.E303*	1.000	194	0%	172	27.9%	0	-	-	-	-	HMMPfam_SMC_N,superfamily_SSF52540
SMC1B	27127	genome.wustl.edu	37	22	45802443	45802443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_148674.3	-1	validated	p.K171N	1.000	236	0%	244	32.4%	0	-	probably_damaging(0.976)	tolerated(0.14)	deleterious(0.667)	HMMPfam_SMC_N,superfamily_SSF52540
SMC1B	27127	genome.wustl.edu	37	22	45804616	45804616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_148674.3	-1	validated	p.E91D	1.000	170	0%	140	33.6%	0	-	possibly_damaging(0.512)	tolerated(0.26)	neutral(0.206)	HMMPfam_SMC_N,superfamily_SSF52540
ATXN10	25814	genome.wustl.edu	37	22	46096205	46096205	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013236.3	+1	reviewed	p.R145	0.999	88	0%	84	38.1%	111	42.3%	-	-	-	superfamily_ARM-type_fold
ATXN10	25814	genome.wustl.edu	37	22	46189558	46189558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000402380	+1	known	p.R9I	0.002	32	0%	30	23.3%	0	-	unknown(0)	-	-	NULL
PKDREJ	10343	genome.wustl.edu	37	22	46653089	46653089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006071.1	-1	reviewed	p.S2044F	0.103	73	0%	54	40.7%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_PKD_channel
PKDREJ	10343	genome.wustl.edu	37	22	46653124	46653124	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006071.1	-1	reviewed	p.S2032	0.000	72	0%	55	23.6%	0	-	-	-	-	HMMPfam_PKD_channel
GTSE1	51512	genome.wustl.edu	37	22	46704318	46704318	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016426.6	+1	reviewed	p.P80	0.000	124	0%	145	36.6%	13	76.9%	-	-	-	NULL
CERK	64781	genome.wustl.edu	37	22	47116004	47116004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022766.5	-1	validated	p.R120W	0.001	131	0%	113	36.3%	19	21%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_PH
ZBED4	9889	genome.wustl.edu	37	22	50277355	50277355	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014838.2	+1	validated	p.F15	0.003	73	0%	64	32.8%	0	-	-	-	-	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50552190	50552190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018995.2	+1	reviewed	p.R286I	0.042	92	0%	70	31.4%	0	-	benign(0.055)	deleterious(0.05)	neutral(0.349)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50552198	50552198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018995.2	+1	reviewed	p.T289A	0.110	94	0%	67	28.4%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50553578	50553578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018995.2	+1	reviewed	p.D388Y	0.001	129	0%	127	33.1%	0	-	possibly_damaging(0.604)	tolerated(0.07)	deleterious(0.528)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50599453	50599453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018995.2	+1	reviewed	p.D1175N	0.119	88	0%	117	35%	0	-	benign(0.016)	tolerated(0.56)	neutral(0.007)	NULL
CRLF2	64109	genome.wustl.edu	37	X	1317569	1317569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000381567	-1	known	p.N166H	0.001	20	0%	50	40%	0	-	benign(0.004)	tolerated(0.28)	neutral(0.032)	superfamily_Fibronectin type III
CSF2RA	1438	genome.wustl.edu	37	X	1401635	1401635	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006140.4	+1	reviewed	p.L13	0.000	288	0%	278	34.9%	0	-	-	-	-	NULL
IL3RA	3563	genome.wustl.edu	37	X	1460691	1460691	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002183.2	+1	reviewed	p.I11	0.000	105	0%	160	38.8%	1	0%	-	-	-	NULL
IL3RA	3563	genome.wustl.edu	37	X	1464313	1464313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002183.2	+1	reviewed	p.D57N	0.001	247	0%	310	35.2%	2	0%	possibly_damaging(0.484)	tolerated(0.56)	neutral(0.167)	NULL
SLC25A6	293	genome.wustl.edu	37	X	1508474	1508474	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001636.3	-1	reviewed	p.A86	1.000	89	0%	94	34%	1355	38.5%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ASMT	438	genome.wustl.edu	37	X	1752167	1752167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004043.2	+1	reviewed	p.Q257H	0.470	278	0%	322	32.6%	0	-	benign(0.007)	deleterious(0.03)	neutral(0.364)	HMMPfam_Methyltransf_2,superfamily_SSF53335
ARSD	414	genome.wustl.edu	37	X	2828814	2828814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001669.2	-1	reviewed	p.E341K	0.397	169	0%	127	30.7%	8	12.5%	benign(0.118)	deleterious(0.02)	neutral(0.393)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
ARSE	415	genome.wustl.edu	37	X	2876330	2876330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000047.2	-1	reviewed	p.G57V	1.000	75	0%	93	28%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSH	347527	genome.wustl.edu	37	X	2947343	2947343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001011719.1	+1	validated	p.D419N	0.402	139	0%	126	42.9%	0	-	benign(0.007)	tolerated(0.07)	neutral(0.319)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSF	416	genome.wustl.edu	37	X	2998959	2998959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004042.3	+1	reviewed	p.V104A	0.034	108	0%	128	29.7%	0	-	benign(0.134)	tolerated(0.35)	neutral(0.032)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
ARSF	416	genome.wustl.edu	37	X	3030574	3030574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004042.3	+1	reviewed	p.R584W	0.000	78	0%	72	34.7%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
PRKX	5613	genome.wustl.edu	37	X	3530318	3530318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005044.4	-1	reviewed	p.E334K	1.000	30	0%	41	34.1%	25	48%	possibly_damaging(0.712)	deleterious(0)	deleterious(0.702)	HMMSmart_S_TK_X
LOC100128355	100128355	genome.wustl.edu	37	X	3635293	3635293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343797.1	+1	model	p.G103V	1.000	43	0%	51	13.7%	0	-	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like
FAM9A	171482	genome.wustl.edu	37	X	8767125	8767125	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174951.3	-1	validated	p.I34	0.001	25	0%	26	38.5%	0	-	-	-	-	NULL
FAM9B	171483	genome.wustl.edu	37	X	9000452	9000452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205849.2	-1	validated	p.T27A	0.244	433	0%	376	25%	0	-	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	NULL
TBL1X	6907	genome.wustl.edu	37	X	9660239	9660239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001139466.1	+1	reviewed	p.R279Q	0.994	112	0%	94	37.2%	5	0%	benign(0.128)	tolerated(0.93)	neutral(0.011)	HMMSmart_SM00320
TBL1X	6907	genome.wustl.edu	37	X	9661249	9661249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001139466.1	+1	reviewed	p.D318Y	1.000	137	0%	124	29%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SM00320,superfamily_WD40 repeat-like
TBL1X	6907	genome.wustl.edu	37	X	9679795	9679795	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001139466.1	+1	reviewed	p.C528	0.957	109	0%	99	20.2%	4	75%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
GPR143	4935	genome.wustl.edu	37	X	9728808	9728808	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000447366	-1	known	p.G39R	0.000	36	0%	45	26.7%	0	-	-	-	-	HMMPfam_Ocular_alb
WWC3	55841	genome.wustl.edu	37	X	10096044	10096044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015691.3	+1	validated	p.N708S	0.370	115	0%	98	38.8%	0	-	benign(0.003)	tolerated(1)	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CLCN4	1183	genome.wustl.edu	37	X	10176347	10176347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001830.3	+1	reviewed	p.P369Q	1.000	491	0%	388	30.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
CLCN4	1183	genome.wustl.edu	37	X	10182074	10182074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001830.3	+1	reviewed	p.R644C	1.000	45	0%	37	29.7%	3	0%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
MID1	4281	genome.wustl.edu	37	X	10535283	10535283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000381.2	-1	reviewed	p.R102Q	0.999	185	0%	161	31.7%	3	66.6%	possibly_damaging(0.844)	deleterious(0.01)	deleterious(0.729)	NULL
ARHGAP6	395	genome.wustl.edu	37	X	11682553	11682553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013427.2	-1	reviewed	p.K132N	1.000	16	0%	15	60%	0	-	benign(0.261)	deleterious(0)	deleterious(0.472)	NULL
FRMPD4	9758	genome.wustl.edu	37	X	12708402	12708402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014728.3	+1	reviewed	p.G257E	0.947	319	0%	268	31.3%	0	-	benign(0.148)	tolerated(0.07)	neutral(0.332)	HMMSmart_B41
FRMPD4	9758	genome.wustl.edu	37	X	12728609	12728609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014728.3	+1	reviewed	p.S521L	1.000	435	0%	417	29.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
FRMPD4	9758	genome.wustl.edu	37	X	12734552	12734552	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014728.3	+1	reviewed	p.F658	0.261	419	0%	443	12.4%	0	-	-	-	-	NULL
FRMPD4	9758	genome.wustl.edu	37	X	12736823	12736823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014728.3	+1	reviewed	p.A1293V	0.998	461	0%	406	30%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
TLR7	51284	genome.wustl.edu	37	X	12905853	12905853	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016562.3	+1	reviewed	p.F742	1.000	350	0%	354	21.5%	2	0%	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
TLR8	51311	genome.wustl.edu	37	X	12937794	12937794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138636.4	+1	reviewed	p.S212Y	0.622	344	0%	327	30%	0	-	benign(0.011)	deleterious(0)	neutral(0.445)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047
RAB9A	9367	genome.wustl.edu	37	X	13727066	13727066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004251.3	+1	provisional	p.E67D	1.000	485	0%	371	31%	45	0%	benign(0.274)	deleterious(0)	deleterious(0.474)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAB9A	9367	genome.wustl.edu	37	X	13727374	13727374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004251.3	+1	provisional	p.R170Q	1.000	239	0%	224	34.8%	63	87.3%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPM6B	2824	genome.wustl.edu	37	X	13834963	13834963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001995.1	-1	reviewed	p.V21L	1.000	541	0%	459	28.1%	0	-	benign(0.227)	tolerated(0.24)	neutral(0.060)	NULL
GLRA2	2742	genome.wustl.edu	37	X	14592483	14592483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001118885.1	+1	reviewed	p.I77M	1.000	269	0%	226	37.6%	1	0%	benign(0.205)	tolerated(0.49)	neutral(0.030)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
ASB11	140456	genome.wustl.edu	37	X	15306046	15306046	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080873.1	-1	reviewed	p.A268	0.001	84	0%	86	34.9%	0	-	-	-	-	superfamily_ANK
FIGF	2277	genome.wustl.edu	37	X	15376306	15376306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004469.2	-1	reviewed	p.E104A	1.000	380	0%	316	26.3%	0	-	probably_damaging(0.992)	tolerated(0.12)	deleterious(0.708)	superfamily_Cystine-knot cytokines
PIR	8544	genome.wustl.edu	37	X	15403223	15403223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001018109.1	-1	reviewed	p.N259S	1.000	114	0%	88	27.3%	2	0%	probably_damaging(0.992)	tolerated(0.23)	deleterious(0.489)	HMMPfam_Pirin_C,superfamily_RmlC_like_cupin
BMX	660	genome.wustl.edu	37	X	15527515	15527515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001721.6	+1	reviewed	p.L68I	0.800	63	0%	60	26.7%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
BMX	660	genome.wustl.edu	37	X	15548113	15548113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001721.6	+1	reviewed	p.I301T	1.000	109	0%	92	27.2%	1	0%	benign(0.004)	tolerated(0.19)	neutral(0.050)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
ACE2	59272	genome.wustl.edu	37	X	15593794	15593794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021804.2	-1	reviewed	p.E479D	1.000	251	0%	265	30.6%	0	-	possibly_damaging(0.662)	tolerated(0.07)	deleterious(0.553)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ACE2	59272	genome.wustl.edu	37	X	15599497	15599497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021804.2	-1	reviewed	p.R306I	0.001	371	0%	386	32.4%	1	0%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ACE2	59272	genome.wustl.edu	37	X	15609837	15609837	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021804.2	-1	reviewed	p.N194K	0.693	653	0.2%	658	27.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
TMEM27	57393	genome.wustl.edu	37	X	15682895	15682895	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020665.4	-1	reviewed	p.L2	0.992	124	0%	123	31.7%	0	-	-	-	-	NULL
CA5B	11238	genome.wustl.edu	37	X	15794933	15794933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007220.3	+1	reviewed	p.L239I	1.000	240	0%	230	12.2%	3	0%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
AP1S2	8905	genome.wustl.edu	37	X	15870608	15870608	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003916.3	-1	reviewed	p.R14*	1.000	63	0%	54	31.5%	22	4.5%	-	-	-	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
GRPR	2925	genome.wustl.edu	37	X	16168626	16168626	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005314.2	+1	reviewed	p.E204	0.983	334	0%	367	27.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CTPS2	56474	genome.wustl.edu	37	X	16657016	16657016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000380207	-1	known	p.S154P	0.000	192	0%	200	29%	0	-	unknown(0)	deleterious(0.05)	-	NULL
S100G	795	genome.wustl.edu	37	X	16672551	16672551	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004057.2	+1	reviewed	p.L53	0.018	453	0.2%	501	32.1%	0	-	-	-	-	PatternScan_S100_CABP,HMMPfam_efhand,superfamily_SSF47473
TXLNG	55787	genome.wustl.edu	37	X	16852420	16852420	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018360.2	+1	reviewed	p.A333	0.987	511	0%	363	30.6%	4	25%	-	-	-	HMMPfam_Taxilin
TXLNG	55787	genome.wustl.edu	37	X	16855743	16855743	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018360.2	+1	reviewed	p.E363*	1.000	128	0%	91	22%	1	100%	-	-	-	HMMPfam_Taxilin
RBBP7	5931	genome.wustl.edu	37	X	16875813	16875813	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002893.3	-1	reviewed	p.N167K	1.000	378	0%	391	17.1%	146	50.6%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RBBP7	5931	genome.wustl.edu	37	X	16876913	16876913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002893.3	-1	reviewed	p.E123K	1.000	269	0%	288	27.8%	158	0.6%	benign(0.005)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00320,superfamily_WD40 repeat-like
NHS	4810	genome.wustl.edu	37	X	17742491	17742491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198270.2	+1	reviewed	p.R373Q	1.000	641	0%	551	32.5%	2	0%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
NHS	4810	genome.wustl.edu	37	X	17745909	17745909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198270.2	+1	reviewed	p.R1207H	0.003	546	0.2%	437	33%	1	0%	benign(0)	tolerated(1)	-	NULL
RAI2	10742	genome.wustl.edu	37	X	17818977	17818977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021785.4	-1	reviewed	p.S385Y	0.992	181	0%	169	30.2%	68	94.1%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
RAI2	10742	genome.wustl.edu	37	X	17819458	17819458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021785.4	-1	reviewed	p.V225I	1.000	90	0%	88	25%	69	0%	unknown(0)	deleterious(0)	-	NULL
BEND2	139105	genome.wustl.edu	37	X	18213498	18213498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153346.4	-1	validated	p.Q366H	0.028	197	0%	174	28.7%	0	-	benign(0.253)	deleterious(0.02)	neutral(0.409)	NULL
SCML2	10389	genome.wustl.edu	37	X	18260683	18260683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006089.2	-1	validated	p.P617H	0.931	159	0%	109	22.9%	0	-	possibly_damaging(0.824)	deleterious(0.03)	deleterious(0.676)	superfamily_SAM/Pointed domain
SCML2	10389	genome.wustl.edu	37	X	18338511	18338511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006089.2	-1	validated	p.M143V	0.995	240	0%	165	24.8%	2	100%	possibly_damaging(0.894)	deleterious(0.02)	deleterious(0.735)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
CDKL5	6792	genome.wustl.edu	37	X	18622693	18622693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001037343.1	+1	reviewed	p.R550Q	0.995	420	0%	359	35.1%	0	-	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	NULL
PPEF1	5475	genome.wustl.edu	37	X	18767973	18767973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006240.2	+1	reviewed	p.S100L	0.000	448	0%	366	29.8%	1	0%	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
ENSG00000250774	0	genome.wustl.edu	37	X	18917277	18917277	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000502927	+1	known	NULL	0.000	25	0%	38	34.2%	0	-	-	-	-	-
GPR64	10149	genome.wustl.edu	37	X	19014254	19014254	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001079858.2	-1	validated	p.I877	1.000	257	0%	243	25.1%	0	-	-	-	-	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Family A G protein-coupled receptor-like
PDHA1	5160	genome.wustl.edu	37	X	19368114	19368114	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000284.3	+1	reviewed	p.E59	1.000	141	0%	181	45.3%	70	85.7%	-	-	-	superfamily_Thiamin diphosphate-binding fold (THDP-binding)
MAP3K15	389840	genome.wustl.edu	37	X	19410499	19410499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001001671.3	-1	validated	p.Y238H	1.000	447	0%	329	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SH3KBP1	30011	genome.wustl.edu	37	X	19554556	19554556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031892.2	-1	reviewed	p.K659N	1.000	96	0%	118	24.6%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CXorf23	256643	genome.wustl.edu	37	X	19947947	19947947	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198279.3	-1	validated	p.F659V	1.000	512	0%	441	30.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CXorf23	256643	genome.wustl.edu	37	X	19973528	19973528	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000340625	-1	known	p.N86H	1.000	153	0%	115	29.6%	0	-	-	-	-	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20028971	20028971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152780.3	-1	validated	p.E717K	0.998	365	0%	322	28%	0	-	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20029055	20029055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152780.3	-1	validated	p.L689I	0.997	334	0%	275	22.2%	0	-	probably_damaging(0.967)	tolerated(0.51)	neutral(0.418)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20030502	20030502	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152780.3	-1	validated	p.D638	0.996	649	0%	569	30.4%	0	-	-	-	-	NULL
EIF1AX	1964	genome.wustl.edu	37	X	20152109	20152109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001412.3	-1	reviewed	p.S74L	1.000	69	0%	57	31.6%	59	57.6%	possibly_damaging(0.713)	deleterious(0)	deleterious(0.702)	HMMSmart_SM00652,HMMPfam_eIF-1a,superfamily_Nucleic acid-binding proteins
CNKSR2	22866	genome.wustl.edu	37	X	21488922	21488922	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014927.3	+1	reviewed	p.H186	1.000	127	0%	116	22.4%	0	-	-	-	-	NULL
CNKSR2	22866	genome.wustl.edu	37	X	21550165	21550165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014927.3	+1	reviewed	p.R428Q	1.000	280	0%	241	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1170
CNKSR2	22866	genome.wustl.edu	37	X	21609231	21609231	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014927.3	+1	reviewed	p.A583	0.575	353	0%	284	29.9%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CNKSR2	22866	genome.wustl.edu	37	X	21627220	21627220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014927.3	+1	reviewed	p.K726T	1.000	144	0.7%	112	30.4%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	NULL
YY2	404281	genome.wustl.edu	37	X	21874824	21874824	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206923.3	+1	reviewed	p.H74	0.005	94	0%	93	10.8%	3	0%	-	-	-	NULL
YY2	404281	genome.wustl.edu	37	X	21875614	21875614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_206923.3	+1	reviewed	p.D338N	1.000	425	0%	330	33.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
PHEX	5251	genome.wustl.edu	37	X	22094544	22094544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000444.4	+1	reviewed	p.E130K	1.000	197	0%	152	28.3%	0	-	probably_damaging(0.99)	tolerated(0.65)	neutral(0.445)	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
ENSG00000249566	0	genome.wustl.edu	37	X	23094125	23094125	+	RNA	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000508288	-1	novel	NULL	1.000	153	0%	103	31.1%	27	0%	-	-	-	-
ENSG00000249566	0	genome.wustl.edu	37	X	23094902	23094902	+	RNA	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000508288	-1	novel	NULL	0.100	258	0%	170	27.1%	33	6%	-	-	-	-
LOC653707	653707	genome.wustl.edu	37	X	23216506	23216506	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343798.1	+1	model	p.F17	0.068	57	0%	35	20%	0	-	-	-	-	NULL
PTCHD1	139411	genome.wustl.edu	37	X	23398111	23398111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173495.2	+1	validated	p.Y252C	1.000	297	0%	236	32.2%	1	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
KLHL15	80311	genome.wustl.edu	37	X	24006224	24006224	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_030624.2	-1	reviewed	p.Q543H	1.000	438	0%	484	34.3%	0	-	benign(0.143)	deleterious(0)	neutral(0.457)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
FAM48B2	170067	genome.wustl.edu	37	X	24331420	24331420	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136233.1	-1	provisional	p.L5V	0.003	129	0%	99	24.2%	0	-	-	-	-	NULL
PDK3	5165	genome.wustl.edu	37	X	24545775	24545775	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142386.2	+1	reviewed	p.E279*	1.000	59	0%	68	25%	7	0%	-	-	-	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
PCYT1B	9468	genome.wustl.edu	37	X	24690710	24690710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000379145	-1	known	p.R14C	0.000	198	0%	215	26%	0	-	benign(0.087)	tolerated(0.12)	neutral(0.267)	NULL
POLA1	5422	genome.wustl.edu	37	X	24744109	24744109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016937.3	+1	reviewed	p.K437N	1.000	189	0%	130	29.2%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DNA_pol_B_exo,superfamily_RNaseH_fold
POLA1	5422	genome.wustl.edu	37	X	24757655	24757655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016937.3	+1	reviewed	p.Q729P	0.319	147	0%	168	29.8%	8	0%	benign(0)	tolerated(0.2)	neutral(0.049)	HMMSmart_POLBc,superfamily_RNaseH_fold
POLA1	5422	genome.wustl.edu	37	X	24760155	24760155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016937.3	+1	reviewed	p.E789K	1.000	274	0%	293	30.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,superfamily_SSF56672
POLA1	5422	genome.wustl.edu	37	X	24828894	24828894	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016937.3	+1	reviewed	p.E1017*	1.000	224	0%	126	31%	6	0%	-	-	-	HMMPfam_DNA_pol_B,superfamily_SSF56672
LOC389842	389842	genome.wustl.edu	37	X	25663949	25663949	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_372200.7	-1	model	p.E166*	0.022	142	0%	97	37.1%	48	0%	-	-	-	superfamily_PH domain-like
MAGEB6	158809	genome.wustl.edu	37	X	26212108	26212108	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173523.2	+1	reviewed	p.L49	0.000	166	0%	156	35.3%	0	-	-	-	-	NULL
DCAF8L2	347442	genome.wustl.edu	37	X	27765880	27765880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136533.1	+1	provisional	p.M290V	0.983	85	0%	101	24.8%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DCAF8L2	347442	genome.wustl.edu	37	X	27766835	27766835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136533.1	+1	provisional	p.S608L	0.000	59	0%	63	15.9%	0	-	-	-	-	NULL
MAGEB10	139422	genome.wustl.edu	37	X	27839520	27839520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182506.3	+1	reviewed	p.E33K	0.000	51	0%	65	35.4%	0	-	benign(0.256)	tolerated(0.6)	neutral(0.031)	NULL
MAGEB10	139422	genome.wustl.edu	37	X	27839718	27839718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182506.3	+1	reviewed	p.D99Y	0.000	64	0%	71	42.3%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
MAGEB10	139422	genome.wustl.edu	37	X	27839738	27839738	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182506.3	+1	reviewed	p.S105	0.000	68	0%	89	27%	0	-	-	-	-	NULL
MAGEB10	139422	genome.wustl.edu	37	X	27840186	27840186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182506.3	+1	reviewed	p.E255K	0.000	91	0%	82	35.4%	0	-	benign(0.115)	tolerated(0.18)	neutral(0.065)	HMMPfam_MAGE
LOC392435	392435	genome.wustl.edu	37	X	27850346	27850346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343800.1	+1	model	p.R53Q	0.000	23	0%	27	44.4%	0	-	-	-	-	NULL
DCAF8L1	139425	genome.wustl.edu	37	X	27998293	27998293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017930.1	-1	reviewed	p.C387R	0.786	247	0%	220	30.9%	0	-	benign(0.005)	tolerated(0.41)	neutral(0.015)	HMMSmart_WD40,superfamily_WD40_like
IL1RAPL1	11141	genome.wustl.edu	37	X	29301089	29301089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014271.3	+1	reviewed	p.K39N	1.000	200	0%	192	30.2%	0	-	probably_damaging(0.965)	tolerated(0.07)	deleterious(0.726)	HMMSmart_SM00409,superfamily_Immunoglobulin
MAGEB3	4114	genome.wustl.edu	37	X	30254267	30254267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002365.4	+1	reviewed	p.D76Y	0.000	40	0%	57	28.1%	0	-	possibly_damaging(0.7)	deleterious(0.02)	deleterious(0.635)	NULL
MAGEB4	4115	genome.wustl.edu	37	X	30260291	30260291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002367.3	+1	reviewed	p.E13D	0.040	80	0%	60	36.7%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
MAGEB4	4115	genome.wustl.edu	37	X	30260410	30260410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002367.3	+1	reviewed	p.S53Y	0.000	70	0%	45	26.7%	0	-	possibly_damaging(0.952)	tolerated(0.65)	neutral(0.399)	NULL
MAGEB4	4115	genome.wustl.edu	37	X	30261226	30261226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002367.3	+1	reviewed	p.R325H	0.000	93	0%	68	32.4%	0	-	unknown(0)	tolerated(0.58)	-	NULL
GK	2710	genome.wustl.edu	37	X	30671719	30671719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128127.1	+1	reviewed	p.S22L	1.000	38	0%	49	32.7%	4	0%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_FGGY_N,superfamily_SSF53067
DMD	1756	genome.wustl.edu	37	X	31165458	31165458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004006.2	-1	reviewed	p.Q3577H	1.000	201	0%	136	36.8%	1	0%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	superfamily_Prefoldin
DMD	1756	genome.wustl.edu	37	X	32235084	32235084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004006.2	-1	reviewed	p.K2129N	1.000	125	0%	95	26.3%	0	-	possibly_damaging(0.44)	tolerated(0.13)	neutral(0.396)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32361328	32361328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004006.2	-1	reviewed	p.D1888Y	1.000	266	0%	205	12.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32382763	32382763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004006.2	-1	reviewed	p.Q1697P	0.993	195	0%	186	25.8%	0	-	benign(0.233)	deleterious(0.02)	neutral(0.407)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32398743	32398743	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004006.2	-1	reviewed	p.R1577*	1.000	263	0%	222	37.4%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32404523	32404523	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004006.2	-1	reviewed	p.G1526	1.000	187	0%	165	33.9%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32482733	32482733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004006.2	-1	reviewed	p.E1082D	1.000	484	0%	369	28.7%	0	-	probably_damaging(1)	tolerated(0.51)	deleterious(0.509)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32503173	32503173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004006.2	-1	reviewed	p.R889Q	0.981	193	0.5%	172	30.8%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47A	158724	genome.wustl.edu	37	X	34148571	34148571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203408.3	-1	validated	p.R609C	0.000	226	0%	228	28.1%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
FAM47A	158724	genome.wustl.edu	37	X	34150173	34150173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203408.3	-1	validated	p.E75K	0.023	188	0%	180	28.9%	0	-	probably_damaging(0.998)	tolerated(0.66)	deleterious(0.477)	NULL
FAM47A	158724	genome.wustl.edu	37	X	34150303	34150303	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_203408.3	-1	validated	p.A31	0.001	142	0%	130	33.8%	0	-	-	-	-	NULL
FAM47B	170062	genome.wustl.edu	37	X	34960955	34960955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152631.2	+1	validated	p.D3N	0.000	59	0%	50	28%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34961413	34961413	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152631.2	+1	validated	p.P155	0.113	171	0%	169	28.4%	0	-	-	-	-	NULL
CXorf22	170063	genome.wustl.edu	37	X	35989995	35989995	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152632.3	+1	validated	p.G723*	0.000	65	0%	89	37.1%	0	-	-	-	-	NULL
CXorf22	170063	genome.wustl.edu	37	X	36007510	36007510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152632.3	+1	validated	p.E930*	0.356	98	0%	80	36.2%	0	-	-	-	-	NULL
CXorf59	286464	genome.wustl.edu	37	X	36091428	36091428	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173695.2	+1	validated	p.L121	1.000	228	0%	189	27.5%	0	-	-	-	-	NULL
FAM47C	442444	genome.wustl.edu	37	X	37027712	37027712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013736.2	+1	validated	p.R410H	0.004	326	0.3%	294	28.6%	0	-	unknown(0)	tolerated(0.15)	-	NULL
FAM47C	442444	genome.wustl.edu	37	X	37028863	37028863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013736.2	+1	validated	p.R794C	0.685	221	0%	167	30.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CYBB	1536	genome.wustl.edu	37	X	37655332	37655332	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000397.3	+1	reviewed	p.V204	0.152	259	0%	218	24.3%	9	0%	-	-	-	HMMPfam_Ferric_reduct
CYBB	1536	genome.wustl.edu	37	X	37665642	37665642	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000397.3	+1	reviewed	p.I439	0.996	244	0%	236	11.9%	21	0%	-	-	-	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
SRPX	8406	genome.wustl.edu	37	X	38031171	38031171	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006307.4	-1	validated	p.D163E	1.000	128	0.8%	116	36.2%	0	-	benign(0.253)	tolerated(1)	neutral(0.026)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SRPX	8406	genome.wustl.edu	37	X	38037563	38037563	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006307.4	-1	validated	p.V44	0.397	121	0%	78	28.2%	0	-	-	-	-	NULL
OTC	5009	genome.wustl.edu	37	X	38229107	38229107	+	Missense_Mutation	SNP	G	G	A	rs66550389	byCluster	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000531.5	+1	reviewed	p.R92Q	1.000	132	0%	126	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_CARBAMOYLTRANSFERASE,superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace_N
BCOR	54880	genome.wustl.edu	37	X	39934252	39934252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001123385.1	-1	reviewed	p.S116L	0.984	124	0%	147	27.9%	0	-	benign(0.121)	deleterious(0.01)	neutral(0.415)	NULL
MED14	9282	genome.wustl.edu	37	X	40511098	40511098	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004229.3	-1	reviewed	p.L1442*	1.000	78	0%	61	31.1%	19	0%	-	-	-	NULL
MED14	9282	genome.wustl.edu	37	X	40541160	40541160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004229.3	-1	reviewed	p.R801C	1.000	210	0%	206	34.5%	11	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
USP9X	8239	genome.wustl.edu	37	X	40996172	40996172	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039590.2	+1	reviewed	p.F184C	1.000	227	0%	224	33.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP9X	8239	genome.wustl.edu	37	X	40999934	40999934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039590.2	+1	reviewed	p.K227T	1.000	126	0%	87	35.6%	2	50%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
USP9X	8239	genome.wustl.edu	37	X	41002634	41002634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039590.2	+1	reviewed	p.R418C	1.000	158	0%	101	31.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP9X	8239	genome.wustl.edu	37	X	41012233	41012233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039590.2	+1	reviewed	p.R599H	1.000	189	0.5%	151	25.2%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CASK	8573	genome.wustl.edu	37	X	41419030	41419030	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003688.3	-1	reviewed	e18+2	1.000	61	0%	26	26.9%	0	-	-	-	-	-
GPR34	2857	genome.wustl.edu	37	X	41555159	41555159	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001097579.1	+1	validated	p.I91M	0.991	301	0%	240	28.3%	3	0%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR34	2857	genome.wustl.edu	37	X	41555683	41555683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001097579.1	+1	validated	p.R266H	0.970	108	0%	83	27.7%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MAOA	4128	genome.wustl.edu	37	X	43542835	43542835	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000240.2	+1	reviewed	p.G50*	1.000	195	0%	187	26.7%	1	0%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
MAOA	4128	genome.wustl.edu	37	X	43571137	43571137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000240.2	+1	reviewed	p.R109W	0.122	113	0%	127	32.3%	1	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
MAOA	4128	genome.wustl.edu	37	X	43591972	43591972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000240.2	+1	reviewed	p.D328Y	1.000	206	0%	137	27%	0	-	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
MAOA	4128	genome.wustl.edu	37	X	43603735	43603735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000240.2	+1	reviewed	p.K520T	0.288	160	0%	86	27.9%	3	0%	benign(0.193)	deleterious(0.01)	neutral(0.424)	superfamily_FAD/NAD(P)-binding domain
MAOB	4129	genome.wustl.edu	37	X	43627946	43627946	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000898.4	-1	reviewed	p.G455	0.958	225	0%	191	26.7%	1	100%	unknown(0)	-	-	superfamily_FAD/NAD(P)-binding domain
EFHC2	80258	genome.wustl.edu	37	X	44108061	44108061	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000441230	-1	known	p.R301*	0.719	45	0%	26	34.6%	0	-	-	-	-	HMMSmart_SM00676
EFHC2	80258	genome.wustl.edu	37	X	44120447	44120447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000333807	-1	known	p.F160L	1.000	256	0%	205	23.4%	0	-	benign(0.023)	tolerated(0.9)	neutral(0.001)	HMMSmart_SM00676
DUSP21	63904	genome.wustl.edu	37	X	44703847	44703847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022076.3	+1	reviewed	p.E157K	1.000	143	0%	137	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
KDM6A	7403	genome.wustl.edu	37	X	44879913	44879913	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021140.2	+1	reviewed	p.E168*	1.000	347	0%	312	30.8%	3	0%	-	-	-	superfamily_SSF48452
KDM6A	7403	genome.wustl.edu	37	X	44935944	44935944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021140.2	+1	reviewed	p.N902S	1.000	202	0%	151	29.8%	11	0%	benign(0.008)	tolerated(0.34)	neutral(0.023)	NULL
CXorf36	79742	genome.wustl.edu	37	X	45059968	45059968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_176819.3	-1	validated	p.S35Y	0.437	85	0%	73	37%	4	0%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
ZNF674	641339	genome.wustl.edu	37	X	46359894	46359894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039891.2	-1	validated	p.R377I	0.000	284	0%	279	34.1%	1	100%	benign(0.011)	tolerated(0.07)	neutral(0.320)	superfamily_SSF57667
RP2	6102	genome.wustl.edu	37	X	46713289	46713289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006915.2	+1	reviewed	p.D161Y	1.000	197	0%	228	29.8%	8	0%	possibly_damaging(0.936)	deleterious(0.03)	deleterious(0.746)	HMMPfam_TBCC
RP2	6102	genome.wustl.edu	37	X	46719466	46719466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006915.2	+1	reviewed	p.S271F	0.016	129	0%	99	27.3%	7	0%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	superfamily_NDK
USP11	8237	genome.wustl.edu	37	X	47098853	47098853	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004651.3	+1	reviewed	p.E173	0.995	101	0%	81	25.9%	16	0%	-	-	-	HMMSmart_DUSP,HMMPfam_DUF1055
TIMP1	7076	genome.wustl.edu	37	X	47444915	47444915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000377018	+1	known	p.S95L	0.002	25	0%	28	35.7%	2	0%	unknown(0)	-	-	HMMPfam_TIMP,HMMSmart_NTR
SYN1	6853	genome.wustl.edu	37	X	47466427	47466427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006950.3	-1	reviewed	p.F148L	1.000	85	0%	70	32.9%	8	0%	probably_damaging(0.987)	tolerated(0.05)	deleterious(0.782)	HMMPfam_Synapsin,superfamily_PreATP-grasp domain
CFP	5199	genome.wustl.edu	37	X	47486877	47486877	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145252.1	-1	reviewed	p.V189	0.769	100	0%	58	31%	2	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
ZNF81	347344	genome.wustl.edu	37	X	47774500	47774500	+	Missense_Mutation	SNP	G	G	A	rs181393507	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007137.3	+1	reviewed	p.R152H	0.000	114	0%	115	32.2%	1	0%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
ZNF81	347344	genome.wustl.edu	37	X	47774690	47774690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007137.3	+1	reviewed	p.K215N	0.983	227	0%	207	59.9%	0	-	benign(0.01)	tolerated(0.24)	neutral(0.038)	NULL
ZNF81	347344	genome.wustl.edu	37	X	47774969	47774969	+	Silent	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007137.3	+1	reviewed	p.V308	0.987	162	0%	148	39.9%	0	-	-	-	-	superfamily_SSF57667
ZNF81	347344	genome.wustl.edu	37	X	47775306	47775306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007137.3	+1	reviewed	p.K421Q	1.000	155	0%	171	31%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF182	7569	genome.wustl.edu	37	X	47836137	47836137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006962.1	-1	reviewed	p.R450I	1.000	220	0.5%	231	29%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF182	7569	genome.wustl.edu	37	X	47837006	47837006	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006962.1	-1	reviewed	p.H160	0.075	140	0%	166	33.1%	2	0%	-	-	-	NULL
SPACA5	389852	genome.wustl.edu	37	X	47867812	47867812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_205856.2	+1	validated	p.A62T	0.006	1156	0%	1132	14%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
SSX6	280657	genome.wustl.edu	37	X	47972594	47972594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000304314	+1	known	p.T141I	0.000	461	0%	332	25.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
SSX5	6758	genome.wustl.edu	37	X	48053630	48053630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021015.3	-1	reviewed	p.R113H	0.000	303	0%	345	23.5%	0	-	benign(0.007)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SSX9	280660	genome.wustl.edu	37	X	48163753	48163753	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000376909	-1	known	p.Y31*	0.032	412	0%	390	29%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SSX3	10214	genome.wustl.edu	37	X	48209519	48209519	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021014.2	-1	reviewed	p.S123	0.000	887	0%	788	28.2%	0	-	-	-	-	NULL
SLC38A5	92745	genome.wustl.edu	37	X	48319449	48319449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033518.2	-1	validated	p.A292V	0.892	35	0%	41	22%	4	0%	benign(0.023)	tolerated(0.61)	neutral(0.005)	HMMPfam_Aa_trans
FTSJ1	24140	genome.wustl.edu	37	X	48339714	48339714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012280.2	+1	reviewed	p.G151D	1.000	74	0%	89	32.6%	31	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
EBP	10682	genome.wustl.edu	37	X	48385382	48385382	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006579.2	+1	reviewed	p.E103*	1.000	193	0%	656	9.5%	183	0%	-	-	-	HMMPfam_EBP
TBC1D25	4943	genome.wustl.edu	37	X	48418550	48418550	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002536.2	+1	validated	p.F418	0.631	31	0%	36	38.9%	11	54.5%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D25	4943	genome.wustl.edu	37	X	48418599	48418599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002536.2	+1	validated	p.P435S	1.000	18	0%	34	35.3%	6	0%	possibly_damaging(0.771)	deleterious(0.02)	deleterious(0.669)	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
WDR13	64743	genome.wustl.edu	37	X	48458046	48458046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017883.4	+1	reviewed	p.S155N	0.998	75	0%	64	39.1%	72	0%	possibly_damaging(0.637)	tolerated(0.22)	neutral(0.265)	NULL
WAS	7454	genome.wustl.edu	37	X	48544141	48544141	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000377.2	+1	reviewed	p.N127H	1.000	16	0%	17	47.1%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729
WAS	7454	genome.wustl.edu	37	X	48549530	48549530	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000377.2	+1	reviewed	p.E496*	0.909	101	0%	92	34.8%	14	0%	-	-	-	NULL
GLOD5	392465	genome.wustl.edu	37	X	48629486	48629486	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000445229	+1	known	p.S82F	0.297	138	0%	155	27.7%	4	0%	-	-	-	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
HDAC6	10013	genome.wustl.edu	37	X	48681341	48681341	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006044.2	+1	reviewed	p.G844	0.002	107	0%	112	28.6%	19	0%	-	-	-	NULL
KCND1	3750	genome.wustl.edu	37	X	48823056	48823056	+	Missense_Mutation	SNP	G	G	T	rs3027482	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004979.4	-1	reviewed	p.L466I	0.792	37	0%	42	26.2%	0	-	possibly_damaging(0.942)	tolerated(0.22)	neutral(0.429)	NULL
KCND1	3750	genome.wustl.edu	37	X	48823365	48823365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004979.4	-1	reviewed	p.R424C	1.000	46	0%	54	25.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Voltage-gated potassium channels
GRIPAP1	56850	genome.wustl.edu	37	X	48847109	48847109	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020137.3	-1	reviewed	p.E226	0.997	88	0%	113	33.6%	17	0%	-	-	-	NULL
TFE3	7030	genome.wustl.edu	37	X	48887741	48887741	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006521.4	-1	reviewed	p.L552	0.986	41	0%	52	46.2%	16	0%	-	-	-	NULL
SYP	6855	genome.wustl.edu	37	X	49049762	49049762	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000472598	-1	known	p.E84G	1.000	52	0%	33	39.4%	1	0%	-	-	-	HMMPfam_MARVEL
CACNA1F	778	genome.wustl.edu	37	X	49063526	49063526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005183.2	-1	reviewed	p.S1735Y	0.466	8	0.000	14	0.429	0	-	benign(0.093)	deleterious(0.01)	neutral(0.413)	NULL
CACNA1F	778	genome.wustl.edu	37	X	49066121	49066121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005183.2	-1	reviewed	p.D1608N	0.867	21	0%	19	47.4%	0	-	benign(0.02)	tolerated(0.41)	neutral(0.016)	HMMPfam_Ca_chan_IQ
CACNA1F	778	genome.wustl.edu	37	X	49068730	49068730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005183.2	-1	reviewed	p.F1338L	1.000	26	0%	40	30%	0	-	benign(0.4)	deleterious(0)	deleterious(0.573)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49086968	49086968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005183.2	-1	reviewed	p.R209W	1.000	17	0%	17	58.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MIR500A	574502	genome.wustl.edu	37	X	49773055	49773055	+	RNA	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000385051	+1	known	NULL	0.989	448	0%	556	43%	0	-	-	-	-	-
CLCN5	1184	genome.wustl.edu	37	X	49840522	49840522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127898.1	+1	reviewed	p.G163E	0.983	286	0%	317	32.8%	0	-	benign(0.001)	tolerated(0.05)	neutral(0.345)	superfamily_Clc chloride channel
CLCN5	1184	genome.wustl.edu	37	X	49850639	49850639	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127898.1	+1	reviewed	p.V312	0.814	232	0%	219	28.3%	3	0%	-	-	-	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
CLCN5	1184	genome.wustl.edu	37	X	49855488	49855488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001127898.1	+1	reviewed	p.V769I	0.982	183	0%	167	23.4%	1	100%	benign(0.141)	deleterious(0)	neutral(0.457)	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
AKAP4	8852	genome.wustl.edu	37	X	49958573	49958573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003886.2	-1	reviewed	p.R264Q	0.604	268	0%	271	27.3%	0	-	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP4	8852	genome.wustl.edu	37	X	49958690	49958690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003886.2	-1	reviewed	p.S225F	0.772	469	0%	456	26.5%	0	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	HMMPfam_RII_binding_1,HMMSmart_SM00807
CCNB3	85417	genome.wustl.edu	37	X	50052667	50052667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033031.2	+1	reviewed	p.T500A	0.000	144	0%	157	26.8%	0	-	possibly_damaging(0.568)	deleterious(0.02)	deleterious(0.578)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50052800	50052800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033031.2	+1	reviewed	p.S544F	0.000	117	0%	113	29.2%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
BMP15	9210	genome.wustl.edu	37	X	50659106	50659106	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005448.2	+1	reviewed	p.S226	0.000	296	0%	227	35.7%	0	-	-	-	-	NULL
NUDT11	55190	genome.wustl.edu	37	X	51238968	51238968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000375992	-1	known	p.S110L	0.992	163	0%	139	33.1%	0	-	benign(0.253)	deleterious(0)	deleterious(0.471)	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
GSPT2	23708	genome.wustl.edu	37	X	51487450	51487450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018094.4	+1	reviewed	p.K243T	1.000	183	0.5%	158	31%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_GTP_EFTU,superfamily_SSF52540
ENSG00000245461	0	genome.wustl.edu	37	X	51488618	51488618	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000502175	-1	novel	NULL	0.983	129	0%	113	31%	2	0%	-	-	-	-
MAGED1	9500	genome.wustl.edu	37	X	51637810	51637810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005333.1	+1	reviewed	p.D45N	0.001	91	0%	75	42.7%	1	0%	unknown(0)	tolerated(0.27)	-	NULL
MAGED1	9500	genome.wustl.edu	37	X	51643295	51643295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001005333.1	+1	reviewed	p.R677Q	1.000	90	0%	64	31.2%	209	0%	unknown(0)	tolerated(0.38)	-	HMMPfam_MAGE
SSX7	280658	genome.wustl.edu	37	X	52682008	52682008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173358.2	-1	reviewed	p.F32L	0.059	510	0.2%	424	32.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
IQSEC2	23096	genome.wustl.edu	37	X	53267432	53267432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001111125.1	-1	validated	p.L1058I	1.000	71	0%	71	36.6%	4	0%	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	HMMSmart_PH,superfamily_SSF50729
IQSEC2	23096	genome.wustl.edu	37	X	53279932	53279932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001111125.1	-1	validated	p.R609H	1.000	47	2.1%	51	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53561531	53561531	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000427052	-1	known	p.R3293*	1.000	172	0%	174	31%	121	0%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HUWE1	10075	genome.wustl.edu	37	X	53565301	53565301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031407.4	-1	reviewed	p.R3998H	1.000	62	0%	106	23.6%	61	0%	unknown(0)	deleterious(0)	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53571677	53571677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031407.4	-1	reviewed	p.P3699S	1.000	229	0%	213	30.5%	46	0%	unknown(0)	tolerated(0.45)	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53585965	53585965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031407.4	-1	reviewed	p.L2658F	1.000	54	0%	74	29.7%	2	100%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53595736	53595736	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000427052	-1	known	p.W1241*	1.000	64	0%	64	28.1%	11	0%	probably_damaging(0.998)	tolerated(0.84)	deleterious(0.475)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53610699	53610699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031407.4	-1	reviewed	p.R1780H	1.000	71	0%	89	34.8%	10	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53616665	53616665	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031407.4	-1	reviewed	p.E1435*	1.000	83	0%	96	22.9%	1	0%	-	-	-	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53652152	53652152	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000424562	-1	known	p.P198S	1.000	218	0%	152	29.6%	4	0%	-	-	-	HMMPfam_DUF913
FAM120C	54954	genome.wustl.edu	37	X	54143174	54143174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017848.4	-1	validated	p.T706A	1.000	276	0%	269	29.7%	0	-	possibly_damaging(0.873)	tolerated(0.37)	neutral(0.358)	NULL
FAM120C	54954	genome.wustl.edu	37	X	54185825	54185825	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017848.4	-1	validated	p.F308	1.000	184	0%	254	26%	0	-	-	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54784769	54784769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198510.2	-1	reviewed	p.R580C	0.077	103	0%	112	30.4%	0	-	benign(0.02)	deleterious(0.02)	neutral(0.384)	NULL
TRO	7216	genome.wustl.edu	37	X	54950963	54950963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039705.1	+1	reviewed	p.R439Q	0.715	55	0%	59	30.5%	2	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
TRO	7216	genome.wustl.edu	37	X	54955294	54955294	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039705.1	+1	reviewed	p.E713*	0.996	54	0%	84	32.1%	3	0%	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54956514	54956514	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001039705.1	+1	reviewed	p.F1119	0.000	152	0%	122	36.9%	2	0%	-	-	-	NULL
ALAS2	212	genome.wustl.edu	37	X	55040033	55040033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000032.4	-1	reviewed	p.K496E	1.000	57	0%	88	27.3%	3	0%	benign(0.253)	tolerated(0.75)	neutral(0.028)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
USP51	158880	genome.wustl.edu	37	X	55514203	55514203	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_201286.3	-1	validated	p.F390	1.000	220	0%	133	33.1%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
FOXR2	139628	genome.wustl.edu	37	X	55650316	55650316	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198451.3	+1	validated	p.E58*	0.011	174	0%	183	25.7%	0	-	-	-	-	NULL
KLF8	11279	genome.wustl.edu	37	X	56291613	56291613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007250.4	+1	reviewed	p.V28I	0.678	89	0%	55	18.2%	0	-	possibly_damaging(0.631)	deleterious(0)	deleterious(0.665)	NULL
KLF8	11279	genome.wustl.edu	37	X	56296717	56296717	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007250.4	+1	reviewed	p.K287N	1.000	184	0%	138	26.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
UBQLN2	29978	genome.wustl.edu	37	X	56590894	56590894	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013444.3	+1	reviewed	p.S196	0.989	129	0%	132	28.8%	22	0%	-	-	-	HMMSmart_SM00727
SPIN3	169981	genome.wustl.edu	37	X	57020734	57020734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001010862.2	-1	validated	p.Y216C	1.000	171	0%	172	35.5%	0	-	benign(0.033)	tolerated(0.13)	neutral(0.254)	HMMPfam_Spin-Ssty
SPIN2B	474343	genome.wustl.edu	37	X	57146849	57146849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001006681.1	-1	validated	p.V72I	1.000	849	0.1%	743	20.5%	6	0%	probably_damaging(0.964)	tolerated(0.25)	neutral(0.443)	HMMPfam_Spin-Ssty
SPIN2A	54466	genome.wustl.edu	37	X	57162432	57162432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019003.3	-1	reviewed	p.R200M	1.000	388	0%	409	26.2%	4	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
FAAH2	158584	genome.wustl.edu	37	X	57358182	57358182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174912.3	+1	reviewed	p.K188N	0.963	251	0%	238	33.2%	11	0%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes
FAAH2	158584	genome.wustl.edu	37	X	57515326	57515326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_174912.3	+1	reviewed	p.E520D	1.000	118	0%	137	22.6%	11	100%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Amidase signature (AS) enzymes
ZXDA	7789	genome.wustl.edu	37	X	57935217	57935217	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007156.4	-1	reviewed	p.P546	0.141	190	0%	149	29.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
ZXDA	7789	genome.wustl.edu	37	X	57935841	57935841	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007156.4	-1	reviewed	p.G338	1.000	57	0%	41	29.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM123B	139285	genome.wustl.edu	37	X	63412689	63412689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152424.3	-1	reviewed	p.P160S	0.000	151	0%	155	29%	1	0%	benign(0.071)	tolerated(0.65)	neutral(0.008)	HMMPfam_WTX
ASB12	142689	genome.wustl.edu	37	X	63444939	63444939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_130388.2	-1	reviewed	p.R189C	0.997	173	0%	185	28.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
LAS1L	81887	genome.wustl.edu	37	X	64749109	64749109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031206.4	-1	validated	p.E277K	0.996	171	0%	150	29.3%	26	76.9%	probably_damaging(0.99)	tolerated(0.17)	deleterious(0.500)	NULL
LAS1L	81887	genome.wustl.edu	37	X	64749713	64749713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031206.4	-1	validated	p.R187H	0.993	222	0.5%	202	20.3%	17	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Las1
LAS1L	81887	genome.wustl.edu	37	X	64751307	64751307	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031206.4	-1	validated	p.P148	0.095	271	0%	257	9.7%	22	31.8%	-	-	-	HMMPfam_Las1
MSN	4478	genome.wustl.edu	37	X	64959670	64959670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002444.2	+1	reviewed	p.R550Q	0.997	576	0%	523	31.4%	153	0.6%	benign(0.169)	tolerated(0.09)	neutral(0.312)	superfamily_Moesin,HMMPfam_ERM
MSN	4478	genome.wustl.edu	37	X	64959738	64959738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002444.2	+1	reviewed	p.E573K	1.000	614	0.2%	524	34.9%	147	0%	benign(0.19)	tolerated(0.16)	neutral(0.077)	superfamily_Moesin,HMMPfam_ERM
HEPH	9843	genome.wustl.edu	37	X	65474881	65474881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138737.3	+1	reviewed	p.E859D	0.529	126	0%	137	25.5%	8	0%	benign(0.017)	tolerated(0.14)	neutral(0.250)	superfamily_Cupredoxins
LOC100129144	100129144	genome.wustl.edu	37	X	66594361	66594361	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001721427.1	+1	model	p.E132*	0.011	124	0%	86	32.6%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100129144	100129144	genome.wustl.edu	37	X	66594761	66594761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001721427.1	+1	model	p.R265I	1.000	55	0%	43	27.9%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
OPHN1	4983	genome.wustl.edu	37	X	67518844	67518844	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002547.2	-1	reviewed	p.I83	0.986	166	0%	133	29.3%	0	-	-	-	-	NULL
OPHN1	4983	genome.wustl.edu	37	X	67518932	67518932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002547.2	-1	reviewed	p.S54Y	0.999	169	0%	134	29.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
STARD8	9754	genome.wustl.edu	37	X	67939242	67939242	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142503.2	+1	reviewed	e7+2	1.000	24	0%	31	25.8%	0	-	-	-	-	-
PJA1	64219	genome.wustl.edu	37	X	68381995	68381995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145119.3	-1	reviewed	p.E363K	0.016	63	0%	81	28.4%	20	0%	possibly_damaging(0.942)	tolerated(0.56)	neutral(0.394)	NULL
PJA1	64219	genome.wustl.edu	37	X	68382828	68382828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145119.3	-1	reviewed	p.S85L	0.009	101	0%	84	20.2%	11	0%	probably_damaging(0.978)	tolerated(1)	neutral(0.420)	NULL
AWAT2	158835	genome.wustl.edu	37	X	69261772	69261772	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002254.1	-1	reviewed	p.S296	0.261	148	0%	127	20.5%	0	-	-	-	-	HMMPfam_DAGAT
AWAT2	158835	genome.wustl.edu	37	X	69263838	69263838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002254.1	-1	reviewed	p.R69W	0.006	18	0%	19	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGAT
DGAT2L6	347516	genome.wustl.edu	37	X	69424209	69424209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198512.1	+1	provisional	p.E234D	0.998	84	0%	81	29.6%	0	-	benign(0.005)	tolerated(0.08)	neutral(0.300)	HMMPfam_DAGAT
P2RY4	5030	genome.wustl.edu	37	X	69478534	69478534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002565.3	-1	reviewed	p.R314Q	1.000	137	0%	120	35.8%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	superfamily_SSF81321
ARR3	407	genome.wustl.edu	37	X	69489988	69489988	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004312.2	+1	validated	p.R47*	0.999	233	0%	203	29.6%	0	-	-	-	-	HMMPfam_Arrestin_N,superfamily_E set domains
RAB41	347517	genome.wustl.edu	37	X	69504449	69504449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001032726.2	+1	reviewed	p.E209K	0.108	158	0%	209	25.8%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF4A	24137	genome.wustl.edu	37	X	69561670	69561670	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012310.4	+1	reviewed	p.L385	0.018	162	0%	167	34.1%	5	0%	-	-	-	NULL
KIF4A	24137	genome.wustl.edu	37	X	69594031	69594031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012310.4	+1	reviewed	p.I569V	0.663	134	0%	122	26.2%	18	100%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
KIF4A	24137	genome.wustl.edu	37	X	69623869	69623869	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012310.4	+1	reviewed	p.Q925	0.991	107	0%	70	12.9%	20	0%	-	-	-	NULL
TEX11	56159	genome.wustl.edu	37	X	69964064	69964064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003811.1	-1	reviewed	p.S248I	1.000	33	0%	24	37.5%	0	-	benign(0.278)	deleterious(0)	deleterious(0.475)	HMMPfam_SPO22,superfamily_TPR-like
TEX11	56159	genome.wustl.edu	37	X	70072969	70072969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001003811.1	-1	reviewed	p.R162M	0.000	75	0%	75	30.7%	0	-	possibly_damaging(0.649)	tolerated(0.09)	deleterious(0.524)	superfamily_TPR-like
SLC7A3	84889	genome.wustl.edu	37	X	70149630	70149630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001048164.2	-1	reviewed	p.A73V	1.000	53	0%	48	39.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
SNX12	29934	genome.wustl.edu	37	X	70281749	70281749	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013346.2	-1	reviewed	p.I110	0.997	78	0%	77	28.6%	36	0%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
SNX12	29934	genome.wustl.edu	37	X	70288024	70288024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_013346.2	-1	reviewed	p.A45T	1.000	16	0%	20	25%	15	0%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
FOXO4	4303	genome.wustl.edu	37	X	70321485	70321485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005938.3	+1	reviewed	p.D469Y	1.000	229	0%	207	35.7%	6	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
MED12	9968	genome.wustl.edu	37	X	70347831	70347831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005120.2	+1	reviewed	p.D1024N	1.000	169	0%	161	28%	3	100%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	NULL
MED12	9968	genome.wustl.edu	37	X	70347916	70347916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005120.2	+1	reviewed	p.S1052I	1.000	192	0%	203	36.5%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MED12	9968	genome.wustl.edu	37	X	70357764	70357764	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000444034	+1	known	p.P201H	1.000	106	0%	90	26.7%	33	0%	-	-	-	NULL
NLGN3	54413	genome.wustl.edu	37	X	70367945	70367945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018977.3	+1	reviewed	p.E116K	1.000	80	0%	79	29.1%	0	-	benign(0.009)	tolerated(0.25)	neutral(0.037)	HMMPfam_COesterase,superfamily_SSF53474
ZMYM3	9203	genome.wustl.edu	37	X	70465883	70465883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005096.3	-1	reviewed	p.H880Y	1.000	259	0%	241	31.1%	11	0%	benign(0.176)	tolerated(0.22)	neutral(0.058)	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70469431	70469431	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005096.3	-1	reviewed	p.C450	1.000	90	0%	73	24.7%	19	0%	-	-	-	HMMPfam_zf-FCS
NONO	4841	genome.wustl.edu	37	X	70511692	70511692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145408.1	+1	reviewed	p.R73Q	0.995	107	0%	139	20.9%	253	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	superfamily_RNA-binding domain RBD
NONO	4841	genome.wustl.edu	37	X	70514147	70514147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145408.1	+1	reviewed	p.R140H	1.000	125	0%	120	31.7%	324	0.6%	benign(0.026)	deleterious(0)	neutral(0.446)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NONO	4841	genome.wustl.edu	37	X	70517750	70517750	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001145408.1	+1	reviewed	p.R365*	1.000	33	0%	37	37.8%	425	0%	-	-	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70602467	70602467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004606.3	+1	reviewed	p.R560Q	1.000	341	0%	335	27.8%	1	0%	probably_damaging(0.976)	tolerated(0.09)	deleterious(0.714)	NULL
TAF1	6872	genome.wustl.edu	37	X	70608210	70608210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004606.3	+1	reviewed	p.A871T	1.000	265	0%	263	28.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1	6872	genome.wustl.edu	37	X	70621534	70621534	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004606.3	+1	reviewed	p.E1335*	1.000	715	0%	598	32.6%	4	0%	-	-	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70679440	70679440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004606.3	+1	reviewed	p.E1721D	0.996	88	0%	72	25%	4	50%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
OGT	8473	genome.wustl.edu	37	X	70757897	70757897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181672.2	+1	reviewed	p.Y146C	1.000	71	0%	78	37.2%	6	0%	probably_damaging(1)	tolerated(0.56)	deleterious(0.506)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
OGT	8473	genome.wustl.edu	37	X	70767789	70767789	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000455587	+1	known	p.R148Q	0.989	334	0%	348	36.2%	8	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
OGT	8473	genome.wustl.edu	37	X	70776888	70776888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_181672.2	+1	reviewed	p.Y418C	1.000	131	0%	139	38.1%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ACRC	93953	genome.wustl.edu	37	X	70823882	70823882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052957.4	+1	validated	p.S252L	0.010	486	0%	470	22.3%	1	0%	unknown(0)	deleterious(0.02)	-	NULL
ACRC	93953	genome.wustl.edu	37	X	70825570	70825570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_052957.4	+1	validated	p.R486H	0.000	79	0%	63	34.9%	0	-	benign(0.118)	tolerated(0.31)	neutral(0.036)	NULL
RPS4X	6191	genome.wustl.edu	37	X	71495440	71495440	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001007.4	-1	reviewed	p.I72	0.853	140	0%	93	30.1%	3964	49%	-	-	-	HMMPfam_S4,HMMSmart_SM00363
HDAC8	55869	genome.wustl.edu	37	X	71684360	71684360	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000440442	-1	known	p.F229C	0.002	229	0%	174	32.2%	0	-	-	-	-	NULL
HDAC8	55869	genome.wustl.edu	37	X	71715034	71715034	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018486.2	-1	reviewed	p.Y174	0.995	193	0%	131	9.9%	15	0%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
PHKA1	5255	genome.wustl.edu	37	X	71864321	71864321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002637.3	-1	reviewed	p.E450D	1.000	49	0%	57	36.8%	1	0%	benign(0.004)	tolerated(0.41)	neutral(0.015)	HMMPfam_PHK_AB
NAP1L2	4674	genome.wustl.edu	37	X	72433164	72433164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021963.2	-1	reviewed	p.D389Y	0.985	289	0%	301	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAP
NAP1L2	4674	genome.wustl.edu	37	X	72433579	72433579	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021963.2	-1	reviewed	p.N250	0.280	231	0%	229	27.5%	0	-	-	-	-	HMMPfam_NAP
NAP1L2	4674	genome.wustl.edu	37	X	72434283	72434283	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021963.2	-1	reviewed	p.E16*	0.021	167	0%	154	23.4%	0	-	-	-	-	NULL
CDX4	1046	genome.wustl.edu	37	X	72667418	72667418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005193.1	+1	provisional	p.S110L	0.114	54	0%	42	26.2%	0	-	possibly_damaging(0.937)	tolerated(0.09)	deleterious(0.679)	HMMPfam_Caudal_act
BMP2KL	347359	genome.wustl.edu	37	X	73406255	73406255	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000414251	+1	known	p.A165V	0.999	110	0%	75	10.7%	0	-	-	-	-	NULL
BMP2KL	347359	genome.wustl.edu	37	X	73406519	73406519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000373488	+1	known	p.K255N	0.989	167	0%	151	31.8%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
RLIM	51132	genome.wustl.edu	37	X	73811846	73811846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016120.3	-1	reviewed	p.R435Q	0.226	193	1%	172	31.4%	7	85.7%	benign(0.037)	tolerated(0.54)	neutral(0.009)	NULL
RLIM	51132	genome.wustl.edu	37	X	73815709	73815709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016120.3	-1	reviewed	p.F35C	1.000	103	1%	88	34.1%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73960196	73960196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001008537.2	-1	validated	p.S1399N	1.000	439	0%	325	25.2%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
ABCB7	22	genome.wustl.edu	37	X	74273295	74273295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004299.3	-1	reviewed	p.K724N	0.971	285	0%	218	31.2%	17	0%	benign(0.012)	deleterious(0.04)	neutral(0.349)	NULL
ABCB7	22	genome.wustl.edu	37	X	74282221	74282221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004299.3	-1	reviewed	p.D627G	0.999	205	0%	140	27.9%	27	77.7%	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,superfamily_SSF52540
ABCB7	22	genome.wustl.edu	37	X	74334632	74334632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004299.3	-1	reviewed	p.R69I	0.014	69	0%	70	30%	6	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
UPRT	139596	genome.wustl.edu	37	X	74494343	74494343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145052.3	+1	reviewed	p.S85N	0.002	48	0%	50	28%	8	87.5%	benign(0.037)	tolerated(0.17)	neutral(0.061)	NULL
MAGEE2	139599	genome.wustl.edu	37	X	75003494	75003494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138703.4	-1	validated	p.L465I	0.280	205	0%	214	27.6%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMPfam_MAGE
MAGEE1	57692	genome.wustl.edu	37	X	75650129	75650129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020932.2	+1	reviewed	p.E602D	0.030	59	0%	42	38.1%	0	-	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMPfam_MAGE
ATRX	546	genome.wustl.edu	37	X	76907774	76907774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000489.3	-1	reviewed	p.E1463K	1.000	807	0%	671	34.3%	2	0%	benign(0.056)	tolerated(0.52)	neutral(0.012)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATP7A	538	genome.wustl.edu	37	X	77264620	77264620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000052.4	+1	reviewed	p.S577P	1.000	632	0.2%	593	29.2%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1
ATP7A	538	genome.wustl.edu	37	X	77289287	77289287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000052.4	+1	reviewed	p.S1160L	0.757	255	0%	222	33.8%	3	0%	benign(0.104)	tolerated(0.27)	neutral(0.042)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
PGK1	5230	genome.wustl.edu	37	X	77372891	77372891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000291.3	+1	reviewed	p.G167D	1.000	103	0%	105	32.4%	356	0.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PGK,superfamily_Phosphoglycerate kinase
TAF9B	51616	genome.wustl.edu	37	X	77387183	77387183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015975.4	-1	reviewed	p.S227L	1.000	465	0%	338	29.9%	6	83.3%	possibly_damaging(0.626)	deleterious(0.04)	deleterious(0.567)	NULL
ZCCHC5	203430	genome.wustl.edu	37	X	77913482	77913482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152694.2	-1	reviewed	p.D146N	0.000	95	0%	94	34%	0	-	benign(0.005)	tolerated(0.14)	neutral(0.249)	NULL
P2RY10	27334	genome.wustl.edu	37	X	78216809	78216809	+	Silent	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014499.2	+1	reviewed	p.I264	1.000	592	0.2%	556	31.8%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GPR174	84636	genome.wustl.edu	37	X	78426628	78426628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032553.1	+1	validated	p.W42R	0.987	99	0%	118	22.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
GPR174	84636	genome.wustl.edu	37	X	78426848	78426848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032553.1	+1	validated	p.R115Q	0.967	252	0%	224	31.7%	5	0%	benign(0.268)	tolerated(0.95)	neutral(0.029)	HMMPfam_7tm_1,superfamily_SSF81321
GPR174	84636	genome.wustl.edu	37	X	78427403	78427403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032553.1	+1	validated	p.R300Q	1.000	222	0%	164	34.1%	0	-	possibly_damaging(0.88)	tolerated(0.82)	neutral(0.344)	superfamily_SSF81321
TBX22	50945	genome.wustl.edu	37	X	79278692	79278692	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001109878.1	+1	reviewed	p.K103N	1.000	113	0%	87	24.1%	0	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_1
FAM46D	169966	genome.wustl.edu	37	X	79698836	79698836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152630.4	+1	validated	p.F266L	0.998	189	0%	129	28.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DUF1693
BRWD3	254065	genome.wustl.edu	37	X	79936860	79936860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153252.4	-1	reviewed	p.R1545I	0.656	536	0%	431	30.4%	4	0%	possibly_damaging(0.563)	deleterious(0)	deleterious(0.637)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79942391	79942391	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153252.4	-1	reviewed	p.R1326*	1.000	298	0%	219	29.2%	1	0%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
BRWD3	254065	genome.wustl.edu	37	X	79952254	79952254	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153252.4	-1	reviewed	p.E1018*	1.000	154	0%	132	22%	4	0%	-	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	79955511	79955511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153252.4	-1	reviewed	p.S963L	1.000	123	0%	98	23.5%	1	100%	benign(0.085)	tolerated(0.13)	neutral(0.259)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79990692	79990692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153252.4	-1	reviewed	p.R307C	1.000	146	0%	135	21.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
POU3F4	5456	genome.wustl.edu	37	X	82763943	82763943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000307.3	+1	reviewed	p.R204I	1.000	117	0%	102	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_1,superfamily_Lambda_like_DNA
CYLC1	1538	genome.wustl.edu	37	X	83128050	83128050	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021118.1	+1	provisional	p.K112Q	0.002	170	0%	159	24.5%	0	-	possibly_damaging(0.539)	tolerated(0.4)	neutral(0.199)	NULL
HDX	139324	genome.wustl.edu	37	X	83724149	83724149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144657.4	-1	validated	p.K194N	1.000	373	0%	311	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HDX	139324	genome.wustl.edu	37	X	83724485	83724485	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144657.4	-1	validated	p.V82	0.998	205	0%	199	29.1%	0	-	-	-	-	NULL
SATL1	340562	genome.wustl.edu	37	X	84362815	84362815	+	Missense_Mutation	SNP	C	C	A	rs189846946	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012980.2	-1	validated	p.R200I	0.000	92	0%	93	32.3%	0	-	probably_damaging(0.982)	tolerated(0.14)	deleterious(0.676)	NULL
ZNF711	7552	genome.wustl.edu	37	X	84525718	84525718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021998.4	+1	reviewed	p.K390N	1.000	74	0%	86	38.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF711	7552	genome.wustl.edu	37	X	84526417	84526417	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021998.4	+1	reviewed	p.V623	0.886	135	0%	130	33.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CHM	1121	genome.wustl.edu	37	X	85212882	85212882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000390.2	-1	reviewed	p.E306D	0.931	216	0%	122	16.4%	2	0%	benign(0.229)	tolerated(0.17)	neutral(0.082)	HMMPfam_GDI,superfamily_SSF51905
CHM	1121	genome.wustl.edu	37	X	85213876	85213876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000390.2	-1	reviewed	p.R270Q	0.992	318	0%	198	31.8%	2	100%	benign(0.076)	tolerated(0.13)	neutral(0.258)	HMMPfam_GDI,superfamily_SSF51905
DACH2	117154	genome.wustl.edu	37	X	86069814	86069814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053281.3	+1	reviewed	p.D554G	0.999	140	0%	115	33%	0	-	possibly_damaging(0.666)	deleterious(0.03)	deleterious(0.601)	NULL
DACH2	117154	genome.wustl.edu	37	X	86071063	86071063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_053281.3	+1	reviewed	p.E571K	1.000	100	0%	66	25.8%	0	-	possibly_damaging(0.851)	deleterious(0.01)	deleterious(0.733)	NULL
KLHL4	56062	genome.wustl.edu	37	X	86868965	86868965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_057162.2	+1	reviewed	p.R170C	0.017	173	0%	144	30.6%	0	-	benign(0.078)	tolerated(0.16)	neutral(0.065)	superfamily_POZ domain
KLHL4	56062	genome.wustl.edu	37	X	86873099	86873099	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_057162.2	+1	reviewed	p.E298*	0.833	151	0%	129	31.8%	0	-	-	-	-	HMMPfam_BACK
KLHL4	56062	genome.wustl.edu	37	X	86877313	86877313	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_057162.2	+1	reviewed	p.E343*	1.000	188	0%	119	31.9%	0	-	-	-	-	HMMPfam_BACK
CPXCR1	53336	genome.wustl.edu	37	X	88008976	88008976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033048.5	+1	validated	p.F187L	0.000	162	0%	138	35.5%	0	-	benign(0.176)	tolerated(1)	neutral(0.016)	NULL
TGIF2LX	90316	genome.wustl.edu	37	X	89177147	89177147	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138960.3	+1	reviewed	p.A21	0.000	131	0%	130	36.2%	0	-	-	-	-	NULL
TGIF2LX	90316	genome.wustl.edu	37	X	89177330	89177330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138960.3	+1	reviewed	p.E82D	1.000	313	0%	229	24.9%	0	-	probably_damaging(0.96)	tolerated(0.11)	deleterious(0.675)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
TGIF2LX	90316	genome.wustl.edu	37	X	89177571	89177571	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138960.3	+1	reviewed	p.P163A	0.000	113	0%	97	32%	0	-	possibly_damaging(0.949)	tolerated(0.06)	deleterious(0.716)	NULL
NAP1L3	4675	genome.wustl.edu	37	X	92928265	92928265	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004538.4	-1	reviewed	p.V13	0.284	71	0%	41	46.3%	0	-	-	-	-	NULL
LOC643371	643371	genome.wustl.edu	37	X	93574786	93574786	+	RNA	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078596.1	+1	model	NULL	1.000	34	0%	42	31%	0	-	-	-	-	-
DIAPH2	1730	genome.wustl.edu	37	X	96136623	96136623	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006729.4	+1	reviewed	p.E165*	1.000	75	0%	58	37.9%	0	-	-	-	-	HMMPfam_Drf_GBD
DIAPH2	1730	genome.wustl.edu	37	X	96502803	96502803	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006729.4	+1	reviewed	p.E937*	0.957	177	0%	159	37.1%	5	0%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
PCDH19	57526	genome.wustl.edu	37	X	99657819	99657819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105243.1	-1	reviewed	p.K726N	1.000	113	0%	92	39.1%	19	100%	possibly_damaging(0.922)	tolerated(0.3)	neutral(0.400)	NULL
PCDH19	57526	genome.wustl.edu	37	X	99662008	99662008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105243.1	-1	reviewed	p.E530K	1.000	76	1.3%	71	26.8%	19	0%	probably_damaging(0.973)	deleterious(0.05)	deleterious(0.760)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99662108	99662108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105243.1	-1	reviewed	p.Q496H	1.000	52	0%	51	33.3%	11	0%	benign(0.003)	tolerated(0.29)	neutral(0.029)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99662308	99662308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105243.1	-1	reviewed	p.V430M	0.386	64	0%	48	29.2%	7	0%	benign(0.008)	tolerated(0.19)	neutral(0.050)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99663412	99663412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001105243.1	-1	reviewed	p.R62C	1.000	20	0%	12	33.3%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
SRPX2	27286	genome.wustl.edu	37	X	99905860	99905860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014467.2	+1	reviewed	p.R54Q	0.506	97	0%	60	55%	10	0%	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	NULL
NOX1	27035	genome.wustl.edu	37	X	100117726	100117726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007052.4	-1	reviewed	p.L141I	0.974	374	0%	390	26.9%	3	0%	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	HMMPfam_Ferric_reduct
XKRX	402415	genome.wustl.edu	37	X	100170055	100170055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_212559.2	-1	reviewed	p.S221P	1.000	213	0%	203	35.5%	0	-	possibly_damaging(0.733)	tolerated(0.08)	deleterious(0.568)	NULL
XKRX	402415	genome.wustl.edu	37	X	100183304	100183304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_212559.2	-1	reviewed	p.R10I	0.004	655	0%	560	30.2%	1	0%	probably_damaging(0.976)	-	-	NULL
ARL13A	392509	genome.wustl.edu	37	X	100243396	100243396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001012990.3	+1	validated	p.K258N	0.915	70	0%	65	30.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CENPI	2491	genome.wustl.edu	37	X	100375733	100375733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006733.2	+1	reviewed	p.P216Q	1.000	261	0%	224	33.9%	4	0%	benign(0.013)	tolerated(0.1)	neutral(0.287)	HMMPfam_Mis6
CENPI	2491	genome.wustl.edu	37	X	100382138	100382138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006733.2	+1	reviewed	p.K263N	1.000	139	0%	154	31.8%	0	-	benign(0.07)	tolerated(0.38)	neutral(0.023)	HMMPfam_Mis6
DRP2	1821	genome.wustl.edu	37	X	100509438	100509438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001939.2	+1	reviewed	p.D668N	1.000	111	0%	60	25%	0	-	possibly_damaging(0.807)	deleterious(0)	deleterious(0.748)	NULL
DRP2	1821	genome.wustl.edu	37	X	100515047	100515047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001939.2	+1	reviewed	p.E880K	0.999	542	0%	480	34.6%	0	-	benign(0.141)	tolerated(0.25)	neutral(0.049)	NULL
TAF7L	54457	genome.wustl.edu	37	X	100547929	100547929	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024885.3	-1	reviewed	p.V35	0.000	245	0%	248	30.2%	0	-	-	-	-	NULL
HNRNPH2	3188	genome.wustl.edu	37	X	100667229	100667229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001032393.1	+1	reviewed	p.V85L	1.000	241	0%	246	30.1%	71	87.3%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HNRNPH2	3188	genome.wustl.edu	37	X	100667727	100667727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001032393.1	+1	reviewed	p.D251Y	0.288	183	0%	185	32.4%	43	0%	possibly_damaging(0.903)	tolerated(0.16)	neutral(0.417)	NULL
ARMCX3	51566	genome.wustl.edu	37	X	100880687	100880687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016607.3	+1	reviewed	p.M240V	1.000	358	0%	406	30%	9	0%	benign(0.017)	tolerated(0.06)	neutral(0.323)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100912262	100912262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014782.5	-1	reviewed	p.A105T	0.006	126	0%	111	25.2%	0	-	probably_damaging(0.955)	tolerated(0.28)	neutral(0.430)	NULL
NXF5	55998	genome.wustl.edu	37	X	101093352	101093352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032946.2	-1	reviewed	p.V256I	0.005	443	0%	435	26%	0	-	benign(0.006)	tolerated(0.82)	neutral(0.001)	superfamily_L domain-like
ZMAT1	84460	genome.wustl.edu	37	X	101139682	101139682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001011657.2	-1	reviewed	p.K239N	0.000	326	0%	354	35.6%	0	-	possibly_damaging(0.659)	deleterious(0.02)	deleterious(0.616)	NULL
TCEAL6	158931	genome.wustl.edu	37	X	101396126	101396126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001006938.2	-1	validated	p.L60M	0.000	339	0%	319	29.2%	0	-	benign(0.422)	tolerated(0.24)	neutral(0.175)	HMMPfam_TFA
NXF2	56001	genome.wustl.edu	37	X	101572404	101572404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017809.3	+1	reviewed	p.T101M	0.001	982	0%	1023	13.3%	0	-	benign(0.017)	tolerated(0.34)	neutral(0.024)	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101911587	101911587	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099410.1	+1	reviewed	p.E916*	0.442	504	0%	407	24.8%	1	0%	-	-	-	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101912839	101912839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099410.1	+1	reviewed	p.D1333G	0.970	357	0%	311	15.8%	1	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_DUF634,superfamily_ARM-type_fold
GPRASP1	9737	genome.wustl.edu	37	X	101913021	101913021	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099410.1	+1	reviewed	p.E1394*	0.003	155	0%	134	34.3%	0	-	-	-	-	NULL
BHLHB9	80823	genome.wustl.edu	37	X	102004292	102004292	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001142524.1	+1	validated	p.F123	0.001	277	0.4%	249	24.9%	0	-	-	-	-	NULL
RAB40AL	282808	genome.wustl.edu	37	X	102192553	102192553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031834.1	+1	reviewed	p.E103K	1.000	390	0%	287	25.8%	0	-	benign(0.023)	deleterious(0.01)	neutral(0.407)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
NXF3	56000	genome.wustl.edu	37	X	102334780	102334780	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000427570	-1	known	p.L234F	1.000	205	0%	250	34.8%	0	-	-	-	-	HMMPfam_NTF2,superfamily_NTF2-like
NXF3	56000	genome.wustl.edu	37	X	102337962	102337962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022052.1	-1	reviewed	p.L221I	0.694	643	0%	703	30.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RAB40A	142684	genome.wustl.edu	37	X	102754975	102754975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080879.2	-1	reviewed	p.R237Q	1.000	404	0%	305	29.8%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
RAB40A	142684	genome.wustl.edu	37	X	102755248	102755248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080879.2	-1	reviewed	p.E146G	1.000	185	0%	163	31.3%	0	-	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
PLP1	5354	genome.wustl.edu	37	X	103041575	103041575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000533.3	+1	reviewed	p.G125S	1.000	246	0%	177	29.4%	0	-	benign(0.026)	tolerated(0.48)	neutral(0.011)	HMMPfam_Myelin_PLP
RAB9B	51209	genome.wustl.edu	37	X	103080498	103080498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016370.2	-1	reviewed	p.R73G	1.000	233	0%	228	35.1%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
RAB9B	51209	genome.wustl.edu	37	X	103080650	103080650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016370.2	-1	reviewed	p.S22L	1.000	334	0%	283	36.7%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
H2BFWT	158983	genome.wustl.edu	37	X	103268190	103268190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001002916.3	-1	reviewed	p.A15T	0.000	27	0%	32	25%	0	-	possibly_damaging(0.477)	tolerated(0.38)	neutral(0.175)	NULL
ZCCHC18	644353	genome.wustl.edu	37	X	103359612	103359612	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001143978.1	+1	provisional	p.D270E	0.004	99	0%	81	23.5%	0	-	-	-	-	NULL
IL1RAPL2	26280	genome.wustl.edu	37	X	104999323	104999323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017416.1	+1	reviewed	p.D449Y	1.000	332	0%	323	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
IL1RAPL2	26280	genome.wustl.edu	37	X	105011595	105011595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017416.1	+1	reviewed	p.N668D	1.000	287	0%	287	26.8%	0	-	benign(0.4)	deleterious(0)	deleterious(0.573)	NULL
NRK	203447	genome.wustl.edu	37	X	105197083	105197083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198465.2	+1	validated	p.S1524Y	1.000	74	0%	50	28%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CNH,HMMSmart_SM00036
SERPINA7	6906	genome.wustl.edu	37	X	105280636	105280636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000354.5	-1	reviewed	p.K138N	0.000	376	0%	319	29.5%	0	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
MUM1L1	139221	genome.wustl.edu	37	X	105450191	105450191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000337685	+1	known	p.E256K	0.908	88	0%	86	30.2%	0	-	possibly_damaging(0.844)	tolerated(0.28)	neutral(0.355)	NULL
MUM1L1	139221	genome.wustl.edu	37	X	105451313	105451313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000337685	+1	known	p.D630Y	0.673	62	0%	57	21.1%	0	-	possibly_damaging(0.597)	deleterious(0.04)	deleterious(0.555)	NULL
CXorf57	55086	genome.wustl.edu	37	X	105855604	105855604	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018015.5	+1	validated	p.T98	0.004	246	0%	249	34.9%	0	-	-	-	-	NULL
CXorf57	55086	genome.wustl.edu	37	X	105855826	105855826	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018015.5	+1	validated	p.A172	0.056	320	0%	294	25.9%	0	-	-	-	-	NULL
CXorf57	55086	genome.wustl.edu	37	X	105868322	105868322	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018015.5	+1	validated	p.T263	0.997	148	0%	131	31.3%	0	-	-	-	-	superfamily_Nucleic acid-binding proteins
CXorf57	55086	genome.wustl.edu	37	X	105876236	105876236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018015.5	+1	validated	p.Q388R	0.999	324	0%	280	25.7%	0	-	possibly_damaging(0.941)	tolerated(0.37)	neutral(0.406)	NULL
CXorf57	55086	genome.wustl.edu	37	X	105905327	105905327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018015.5	+1	validated	p.E687D	0.069	169	0%	148	35.8%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
CXorf57	55086	genome.wustl.edu	37	X	105921476	105921476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018015.5	+1	validated	p.E852D	0.000	98	0%	77	37.7%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106091525	106091525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017752.2	+1	validated	p.R610Q	1.000	332	0%	260	31.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D8B	54885	genome.wustl.edu	37	X	106109163	106109163	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000431860	+1	known	p.S117P	0.630	479	0%	342	30.4%	0	-	-	-	-	superfamily_EF-hand
TBC1D8B	54885	genome.wustl.edu	37	X	106109245	106109245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017752.2	+1	validated	p.E882*	1.000	315	0%	260	35%	0	-	-	-	-	superfamily_EF-hand
MORC4	79710	genome.wustl.edu	37	X	106186104	106186104	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_024657.4	-1	reviewed	p.E673*	0.914	620	0%	576	29.3%	2	0%	-	-	-	NULL
RBM41	55285	genome.wustl.edu	37	X	106359130	106359130	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018301.3	-1	validated	p.E94*	1.000	455	0%	371	29.6%	1	0%	-	-	-	NULL
CXorf41	139212	genome.wustl.edu	37	X	106486502	106486502	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173494.1	+1	validated	p.E207*	0.998	294	0.3%	233	31.3%	0	-	-	-	-	NULL
FRMPD3	84443	genome.wustl.edu	37	X	106797668	106797668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_042978.6	+1	model	p.F265L	1.000	57	0%	45	15.6%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	superfamily_FERM_3-hlx,HMMSmart_B41
TSC22D3	1831	genome.wustl.edu	37	X	106957842	106957842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_198057.2	-1	reviewed	p.E170D	1.000	283	0%	211	13.7%	22	0%	possibly_damaging(0.685)	tolerated(0.12)	deleterious(0.505)	HMMPfam_TSC22
TSC22D3	1831	genome.wustl.edu	37	X	106959936	106959936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004089.3	-1	reviewed	p.V36I	1.000	46	0%	34	44.1%	9	0%	possibly_damaging(0.77)	tolerated(0.11)	deleterious(0.557)	NULL
MID2	11043	genome.wustl.edu	37	X	107169955	107169955	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012216.3	+1	reviewed	p.K620	1.000	188	0%	254	34.6%	2	0%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
VSIG1	340547	genome.wustl.edu	37	X	107319387	107319387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182607.4	+1	reviewed	p.A257T	0.005	445	0%	421	13.3%	0	-	possibly_damaging(0.692)	tolerated(0.49)	neutral(0.258)	NULL
COL4A6	1288	genome.wustl.edu	37	X	107420182	107420182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001847.2	-1	reviewed	p.K860E	0.996	237	0%	251	26.7%	0	-	probably_damaging(0.975)	tolerated(0.1)	deleterious(0.704)	NULL
COL4A6	1288	genome.wustl.edu	37	X	107422483	107422483	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001847.2	-1	reviewed	p.G774*	1.000	191	0%	169	24.3%	1	0%	-	-	-	HMMPfam_Collagen
COL4A6	1288	genome.wustl.edu	37	X	107430347	107430347	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001847.2	-1	reviewed	p.Q645*	0.047	753	0%	639	29.9%	0	-	-	-	-	HMMPfam_Collagen
COL4A6	1288	genome.wustl.edu	37	X	107462953	107462953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001847.2	-1	reviewed	p.G101D	1.000	612	0%	529	28.2%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Collagen
COL4A6	1288	genome.wustl.edu	37	X	107464500	107464500	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001847.2	-1	reviewed	p.L84	0.262	276	0%	241	32.8%	0	-	-	-	-	HMMPfam_Collagen
COL4A5	1287	genome.wustl.edu	37	X	107821570	107821570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033380.1	+1	reviewed	p.E246G	1.000	206	0%	208	32.7%	0	-	unknown(0)	tolerated(0.39)	-	NULL
COL4A5	1287	genome.wustl.edu	37	X	107841957	107841957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033380.1	+1	reviewed	p.R602I	1.000	382	0%	299	29.4%	0	-	unknown(0)	deleterious(0.05)	-	HMMPfam_Collagen
COL4A5	1287	genome.wustl.edu	37	X	107925043	107925043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033380.1	+1	reviewed	p.A1381S	0.049	218	0%	234	35.9%	0	-	benign(0.02)	tolerated(0.77)	neutral(0.002)	NULL
COL4A5	1287	genome.wustl.edu	37	X	107938584	107938584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033380.1	+1	reviewed	p.E1637K	1.000	296	0.7%	291	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
COL4A5	1287	genome.wustl.edu	37	X	107939580	107939580	+	Missense_Mutation	SNP	G	G	A	rs104886308	byCluster	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033380.1	+1	reviewed	p.R1683Q	1.000	338	0%	286	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
IRS4	8471	genome.wustl.edu	37	X	107975897	107975897	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003604.2	-1	reviewed	p.P1226	0.006	91	0%	75	41.3%	0	-	-	-	-	NULL
IRS4	8471	genome.wustl.edu	37	X	107977579	107977579	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003604.2	-1	reviewed	p.E666*	0.984	403	0.2%	274	35%	0	-	-	-	-	NULL
GUCY2F	2986	genome.wustl.edu	37	X	108652274	108652274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001522.2	-1	reviewed	p.D639Y	1.000	370	0%	357	24.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
GUCY2F	2986	genome.wustl.edu	37	X	108691390	108691390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001522.2	-1	reviewed	p.R493C	0.300	158	0%	107	30.8%	0	-	possibly_damaging(0.729)	deleterious(0.04)	deleterious(0.615)	NULL
GUCY2F	2986	genome.wustl.edu	37	X	108718889	108718889	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001522.2	-1	reviewed	p.Y93H	0.010	325	0%	366	32.2%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ACSL4	2182	genome.wustl.edu	37	X	108906587	108906587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022977.2	-1	reviewed	p.V520I	0.760	715	0%	518	29.5%	7	71.4%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSL4	2182	genome.wustl.edu	37	X	108924260	108924260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_022977.2	-1	reviewed	p.S249A	0.990	331	0%	259	25.1%	2	0%	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
TMEM164	84187	genome.wustl.edu	37	X	109310616	109310616	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032227.3	+1	validated	p.V144	0.001	336	0.3%	248	23.8%	14	0%	-	-	-	NULL
TMEM164	84187	genome.wustl.edu	37	X	109414697	109414697	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032227.3	+1	validated	p.S212	0.584	1344	0%	1002	29.2%	12	0%	-	-	-	NULL
RGAG1	57529	genome.wustl.edu	37	X	109695548	109695548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020769.2	+1	validated	p.K568T	0.228	539	0%	419	26%	0	-	benign(0.013)	tolerated(0.25)	neutral(0.037)	NULL
RGAG1	57529	genome.wustl.edu	37	X	109696562	109696562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020769.2	+1	validated	p.A906V	0.000	696	0.1%	470	31.9%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
RGAG1	57529	genome.wustl.edu	37	X	109696621	109696621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020769.2	+1	validated	p.E926*	0.221	596	0%	463	32%	0	-	-	-	-	NULL
PAK3	5063	genome.wustl.edu	37	X	110388119	110388119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128168.1	+1	reviewed	p.T103M	1.000	43	0%	42	23.8%	0	-	benign(0.298)	deleterious(0.02)	deleterious(0.475)	HMMPfam_PBD,HMMSmart_PBD
PAK3	5063	genome.wustl.edu	37	X	110416274	110416274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128168.1	+1	reviewed	p.K301N	1.000	159	0%	103	30.1%	0	-	benign(0.002)	tolerated(0.29)	neutral(0.029)	superfamily_Kinase_like
PAK3	5063	genome.wustl.edu	37	X	110435814	110435814	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128168.1	+1	reviewed	p.N356	1.000	184	0%	187	25.7%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PAK3	5063	genome.wustl.edu	37	X	110439732	110439732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001128168.1	+1	reviewed	p.G460E	1.000	383	0%	337	28.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CAPN6	827	genome.wustl.edu	37	X	110507159	110507159	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014289.3	-1	reviewed	p.G2	0.999	266	0%	196	25%	0	-	-	-	-	NULL
LOC100288324	100288324	genome.wustl.edu	37	X	110644440	110644440	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343839.1	+1	model	p.G135*	1.000	242	0%	241	32%	0	-	-	-	-	NULL
DCX	1641	genome.wustl.edu	37	X	110653395	110653395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000555.2	-1	reviewed	p.R159C	1.000	520	0.4%	537	33.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
ALG13	79868	genome.wustl.edu	37	X	110951614	110951614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000394780	+1	known	p.S248L	0.999	372	0%	470	35.3%	1	0%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_OTU,superfamily_SSF54001
ALG13	79868	genome.wustl.edu	37	X	110961417	110961417	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000394780	+1	known	p.R389*	1.000	17	0%	13	53.8%	0	-	-	-	-	NULL
ALG13	79868	genome.wustl.edu	37	X	111003159	111003159	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000394780	+1	known	p.N1116H	1.000	71	0%	74	33.8%	1	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111097276	111097276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012471.2	-1	reviewed	p.P320H	1.000	92	0%	140	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111195413	111195413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012471.2	-1	reviewed	p.E79G	1.000	525	0%	458	35.6%	0	-	benign(0.315)	tolerated(0.21)	neutral(0.143)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
AMOT	154796	genome.wustl.edu	37	X	112022766	112022766	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001113490.1	-1	reviewed	p.S872	0.001	55	0%	30	23.3%	9	100%	-	-	-	NULL
HTR2C	3358	genome.wustl.edu	37	X	114082611	114082611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000868.2	+1	reviewed	p.S132Y	0.992	401	0%	212	30.7%	0	-	benign(0.01)	tolerated(0.08)	neutral(0.300)	HMMPfam_7tm_1,superfamily_SSF81321
HTR2C	3358	genome.wustl.edu	37	X	114082667	114082667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000868.2	+1	reviewed	p.D151Y	1.000	322	0%	178	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
HTR2C	3358	genome.wustl.edu	37	X	114141930	114141930	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000868.2	+1	reviewed	p.L443	0.000	256	0%	253	26.1%	0	-	-	-	-	NULL
LRCH2	57631	genome.wustl.edu	37	X	114361427	114361427	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020871.3	-1	validated	p.T590	1.000	7	0.000	15	0.467	0	-	-	-	-	NULL
LRCH2	57631	genome.wustl.edu	37	X	114422820	114422820	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020871.3	-1	validated	p.N155H	1.000	25	0%	24	29.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LRR_1,superfamily_SSF52058
LUZP4	51213	genome.wustl.edu	37	X	114541203	114541203	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016383.3	+1	validated	p.L259R	0.000	521	0%	424	23.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PLS3	5358	genome.wustl.edu	37	X	114880496	114880496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001136025.3	+1	reviewed	p.N456S	1.000	98	0%	97	29.9%	19	5.2%	possibly_damaging(0.671)	tolerated(0.55)	neutral(0.245)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
AGTR2	186	genome.wustl.edu	37	X	115304368	115304368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000686.4	+1	reviewed	p.D279N	1.000	309	0%	204	33.3%	0	-	possibly_damaging(0.739)	deleterious(0)	deleterious(0.715)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KLHL13	90293	genome.wustl.edu	37	X	117033084	117033084	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033495.3	-1	reviewed	p.F585	1.000	443	0%	455	12.3%	4	0%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL13	90293	genome.wustl.edu	37	X	117033288	117033288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_033495.3	-1	reviewed	p.Q517H	1.000	619	0%	505	36.8%	0	-	benign(0.01)	tolerated(0.5)	neutral(0.011)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
WDR44	54521	genome.wustl.edu	37	X	117528090	117528090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019045.4	+1	reviewed	p.S300Y	1.000	318	0%	258	14.3%	2	0%	possibly_damaging(0.687)	tolerated(0.16)	neutral(0.305)	superfamily_WD40 repeat-like
DOCK11	139818	genome.wustl.edu	37	X	117679322	117679322	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144658.3	+1	validated	p.V143	0.377	111	0%	95	25.3%	2	0%	-	-	-	NULL
DOCK11	139818	genome.wustl.edu	37	X	117805040	117805040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144658.3	+1	validated	p.R1711C	1.000	203	0%	195	29.2%	1	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117814501	117814501	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144658.3	+1	validated	p.K1839	0.997	263	0%	229	34.5%	1	0%	-	-	-	NULL
LONRF3	79836	genome.wustl.edu	37	X	118145893	118145893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001031855.1	+1	reviewed	p.G590S	1.000	129	0.8%	105	23.8%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LON,HMMSmart_SM00464
LOC727838	727838	genome.wustl.edu	37	X	118207945	118207945	+	Missense_Mutation	SNP	G	G	A	rs188327284	by1000genomes	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343842.1	+1	model	p.A223T	0.000	241	0%	155	36.8%	0	-	-	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118223340	118223340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020721.1	-1	validated	p.G618E	0.000	236	0%	180	30%	0	-	possibly_damaging(0.764)	tolerated(0.06)	deleterious(0.606)	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118230485	118230485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020721.1	-1	validated	p.R413H	0.060	130	0%	158	23.4%	0	-	probably_damaging(0.998)	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118284277	118284277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020721.1	-1	validated	p.R89Q	0.000	39	0%	31	32.3%	0	-	unknown(0)	-	-	NULL
SLC25A43	203427	genome.wustl.edu	37	X	118586925	118586925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145305.2	+1	reviewed	p.K308T	1.000	410	0%	375	29.9%	7	0%	benign(0.021)	tolerated(0.35)	neutral(0.022)	NULL
UBE2A	7319	genome.wustl.edu	37	X	118716599	118716599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003336.2	+1	reviewed	p.S97I	1.000	153	0%	117	30.8%	64	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
NKRF	55922	genome.wustl.edu	37	X	118723549	118723549	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017544.3	-1	reviewed	p.Y613	0.950	256	0%	247	26.7%	4	0%	-	-	-	HMMPfam_R3H,HMMSmart_SM00393,superfamily_R3H domain
SEPT6	23157	genome.wustl.edu	37	X	118763403	118763403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_015129.5	-1	reviewed	p.K386N	1.000	197	0%	196	33.7%	13	0%	possibly_damaging(0.745)	deleterious(0)	deleterious(0.718)	NULL
UPF3B	65109	genome.wustl.edu	37	X	118975045	118975045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_080632.1	-1	reviewed	p.K267N	1.000	183	0%	196	24%	8	0%	unknown(0)	tolerated(0.1)	-	NULL
RNF113A	7737	genome.wustl.edu	37	X	119005121	119005121	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006978.2	-1	reviewed	p.I152	1.000	437	0%	483	31.1%	25	16%	-	-	-	NULL
RHOXF2B	727940	genome.wustl.edu	37	X	119211125	119211125	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099685.1	-1	provisional	p.E70*	0.001	107	0%	109	22%	0	-	-	-	-	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119389157	119389157	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006777.3	+1	reviewed	p.T629	0.483	241	0%	223	14.3%	9	0%	-	-	-	NULL
FAM70A	55026	genome.wustl.edu	37	X	119419553	119419553	+	Splice_Site	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017938.3	-1	validated	e6-2	0.998	170	0%	193	26.9%	0	-	-	-	-	-
LAMP2	3920	genome.wustl.edu	37	X	119565294	119565294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002294.2	-1	reviewed	p.D373N	1.000	394	0%	279	32.3%	253	0%	probably_damaging(0.994)	tolerated(0.5)	neutral(0.462)	HMMPfam_Lamp,PatternScan_LAMP_2
LAMP2	3920	genome.wustl.edu	37	X	119582916	119582916	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001122606.1	-1	reviewed	p.S155R	0.276	232	0%	182	31.3%	264	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Lamp
CUL4B	8450	genome.wustl.edu	37	X	119681008	119681008	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003588.3	-1	reviewed	p.Q271	0.990	152	0%	165	27.9%	7	85.7%	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
GLUD2	2747	genome.wustl.edu	37	X	120181970	120181970	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012084.3	+1	reviewed	p.T144	0.998	67	0%	67	35.8%	18	0%	-	-	-	HMMPfam_ELFV_dehydrog_N,superfamily_SSF53223
GLUD2	2747	genome.wustl.edu	37	X	120182660	120182660	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_012084.3	+1	reviewed	p.V374	0.917	243	0.4%	203	28.6%	0	-	-	-	-	HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd
LOC643421	643421	genome.wustl.edu	37	X	120997579	120997579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343843.1	-1	model	p.L120P	0.974	43	0%	27	37%	0	-	-	-	-	HMMPfam_TCTP,superfamily_Mss4-like
MRRFP1	286423	genome.wustl.edu	37	X	122251115	122251115	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000435941	-1	known	p.S165	0.998	339	0%	250	33.6%	0	-	-	-	-	HMMPfam_RRF,superfamily_Ribosome_recyc_fac
MRRFP1	286423	genome.wustl.edu	37	X	122251339	122251339	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000435941	-1	known	p.E91*	1.000	267	0%	174	14.9%	0	-	-	-	-	superfamily_Ribosome_recyc_fac
MRRFP1	286423	genome.wustl.edu	37	X	122251584	122251584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000435941	-1	known	p.R9H	0.004	360	0%	220	31.8%	0	-	benign(0.064)	deleterious(0)	neutral(0.449)	NULL
GRIA3	2892	genome.wustl.edu	37	X	122387348	122387348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000264357	+1	known	p.H155N	0.999	305	0%	318	27.4%	1	0%	benign(0.006)	deleterious(0.01)	neutral(0.406)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRIA3	2892	genome.wustl.edu	37	X	122561851	122561851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000264357	+1	known	p.S646Y	1.000	288	0%	242	31.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIA3	2892	genome.wustl.edu	37	X	122616784	122616784	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000828.4	+1	reviewed	p.N858S	1.000	230	0%	210	33.3%	0	-	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122755243	122755243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081550.1	-1	validated	p.E1327D	0.997	633	0%	526	32.3%	10	0%	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
THOC2	57187	genome.wustl.edu	37	X	122769939	122769939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081550.1	-1	validated	p.A670V	1.000	166	0%	128	18.8%	4	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
THOC2	57187	genome.wustl.edu	37	X	122805548	122805548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081550.1	-1	validated	p.L278R	1.000	241	0%	144	27.8%	5	0%	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	NULL
THOC2	57187	genome.wustl.edu	37	X	122829895	122829895	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081550.1	-1	validated	p.L193	1.000	131	0%	85	27.1%	0	-	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122846751	122846751	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081550.1	-1	validated	p.L27	1.000	53	0%	49	24.5%	6	0%	-	-	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123229296	123229296	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042749.1	+1	validated	p.E1260	1.000	199	0%	212	29.7%	41	0%	-	-	-	NULL
LOC100129231	100129231	genome.wustl.edu	37	X	123338605	123338605	+	RNA	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XR_078598.1	-1	model	NULL	1.000	30	0%	59	20.3%	0	-	-	-	-	-
SH2D1A	4068	genome.wustl.edu	37	X	123505212	123505212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002351.4	+1	reviewed	p.D120N	0.949	296	0%	240	25%	0	-	benign(0.328)	tolerated(0.27)	neutral(0.137)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123514647	123514647	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.V2639	0.993	364	0.3%	301	33.9%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123518490	123518490	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.V2090	0.947	220	0%	196	30.6%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123519631	123519631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.D1984G	1.000	281	0%	284	29.9%	0	-	possibly_damaging(0.922)	tolerated(0.69)	neutral(0.373)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123615584	123615584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.R1309Q	1.000	175	0%	171	31.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF101898
ODZ1	10178	genome.wustl.edu	37	X	123630916	123630916	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.F1215	0.999	211	0%	200	33%	0	-	-	-	-	superfamily_SSF101898
ODZ1	10178	genome.wustl.edu	37	X	123637512	123637512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.L1115I	1.000	567	0%	567	27.3%	0	-	probably_damaging(0.97)	tolerated(0.22)	neutral(0.454)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123680827	123680827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.L850I	0.964	177	0%	169	30.2%	0	-	benign(0.016)	tolerated(0.15)	neutral(0.241)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123785874	123785874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.S490L	0.782	250	0%	219	30.6%	0	-	benign(0.089)	tolerated(0.56)	neutral(0.013)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123839054	123839054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_014253.3	-1	reviewed	p.A275V	1.000	356	0%	345	29%	0	-	possibly_damaging(0.659)	deleterious(0.03)	deleterious(0.597)	HMMPfam_Ten_N
DCAF12L2	340578	genome.wustl.edu	37	X	125298869	125298869	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001013628.2	-1	reviewed	p.R347*	0.458	70	0%	75	34.7%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like
DCAF12L1	139170	genome.wustl.edu	37	X	125685911	125685911	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_178470.4	-1	reviewed	p.F227	0.003	30	0%	31	38.7%	0	-	-	-	-	superfamily_WD40_like
SMARCA1	6594	genome.wustl.edu	37	X	128599549	128599549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003069.3	-1	reviewed	p.R993Q	1.000	368	0%	296	34.8%	26	30.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_SLIDE
SMARCA1	6594	genome.wustl.edu	37	X	128632027	128632027	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003069.3	-1	reviewed	p.K433N	1.000	175	0%	169	28.4%	14	0%	possibly_damaging(0.748)	deleterious(0)	deleterious(0.719)	HMMPfam_SNF2_N
SMARCA1	6594	genome.wustl.edu	37	X	128641998	128641998	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003069.3	-1	reviewed	p.E296*	1.000	125	0%	72	33.3%	4	0%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCA1	6594	genome.wustl.edu	37	X	128650350	128650350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003069.3	-1	reviewed	p.R129Q	1.000	429	0.2%	368	29.6%	9	0%	possibly_damaging(0.515)	tolerated(0.22)	neutral(0.215)	superfamily_P-loop containing nucleoside triphosphate hydrolases
OCRL	4952	genome.wustl.edu	37	X	128691369	128691369	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000276.3	+1	reviewed	p.E102	0.742	249	0%	225	34.7%	3	0%	-	-	-	NULL
OCRL	4952	genome.wustl.edu	37	X	128692902	128692902	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000276.3	+1	reviewed	p.S216A	0.990	525	0%	476	29.4%	6	66.6%	benign(0)	tolerated(0.82)	neutral(0.001)	superfamily_DNase I-like
XPNPEP2	7512	genome.wustl.edu	37	X	128889282	128889282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003399.5	+1	reviewed	p.F410L	0.974	251	0%	222	29.7%	1	0%	possibly_damaging(0.623)	tolerated(0.67)	neutral(0.220)	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
XPNPEP2	7512	genome.wustl.edu	37	X	128896669	128896669	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003399.5	+1	reviewed	e19-1	1.000	142	0%	122	27.9%	0	-	-	-	-	-
SASH3	54440	genome.wustl.edu	37	X	128927086	128927086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018990.3	+1	reviewed	p.T308M	0.993	68	0%	70	30%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
UTP14A	10813	genome.wustl.edu	37	X	129045084	129045084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006649.3	+1	reviewed	p.K113N	1.000	404	0%	386	32.1%	4	0%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	HMMPfam_Utp14
BCORL1	63035	genome.wustl.edu	37	X	129148888	129148888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021946.3	+1	reviewed	p.P714T	1.000	128	0%	95	40%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AIFM1	9131	genome.wustl.edu	37	X	129283453	129283453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004208.3	-1	reviewed	p.A114T	0.000	151	0%	151	25.8%	64	0%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
ZNF280C	55609	genome.wustl.edu	37	X	129360830	129360830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017666.4	-1	validated	p.R433I	0.999	260	0%	212	25.5%	4	0%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC25A14	9016	genome.wustl.edu	37	X	129480575	129480575	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003951.2	+1	reviewed	p.D76A	1.000	342	0.3%	324	29.3%	1	100%	probably_damaging(1)	tolerated(0.69)	deleterious(0.502)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A14	9016	genome.wustl.edu	37	X	129484645	129484645	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003951.2	+1	reviewed	p.I146	1.000	243	0%	253	34.4%	7	0%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A14	9016	genome.wustl.edu	37	X	129498659	129498659	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003951.2	+1	reviewed	p.Y218D	1.000	110	0%	100	35%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A14	9016	genome.wustl.edu	37	X	129499574	129499574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003951.2	+1	reviewed	p.R260Q	1.000	210	0%	225	34.7%	18	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC25A14	9016	genome.wustl.edu	37	X	129506885	129506885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003951.2	+1	reviewed	p.F313L	1.000	628	0%	623	34.7%	19	0%	possibly_damaging(0.571)	deleterious(0.02)	deleterious(0.579)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ARHGAP36	158763	genome.wustl.edu	37	X	130217158	130217158	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144967.3	+1	validated	p.P91	0.991	331	0%	210	27.1%	0	-	-	-	-	NULL
ARHGAP36	158763	genome.wustl.edu	37	X	130220339	130220339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_144967.3	+1	validated	p.V440M	0.987	367	0%	301	29.6%	0	-	probably_damaging(0.959)	tolerated(0.16)	neutral(0.462)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130408141	130408141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001555.4	-1	reviewed	p.R1264Q	1.000	576	0%	545	33.6%	0	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130408833	130408833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001555.4	-1	reviewed	p.S1164F	0.990	593	0%	567	24.3%	0	-	benign(0.048)	tolerated(0.05)	neutral(0.348)	superfamily_Immunoglobulin
IGSF1	3547	genome.wustl.edu	37	X	130411913	130411913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001555.4	-1	reviewed	p.G746D	1.000	176	0%	169	33.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OR13H1	347468	genome.wustl.edu	37	X	130678305	130678305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001004486.1	+1	provisional	p.F86L	0.034	574	0.2%	545	32.8%	0	-	benign(0.006)	tolerated(0.9)	-	HMMPfam_7tm_1,superfamily_SSF81321
FRMD7	90167	genome.wustl.edu	37	X	131211912	131211912	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194277.2	-1	reviewed	p.Y711*	1.000	206	0%	146	28.1%	0	-	-	-	-	NULL
FRMD7	90167	genome.wustl.edu	37	X	131212206	131212206	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194277.2	-1	reviewed	p.C613	1.000	259	0%	232	29.7%	0	-	-	-	-	NULL
FRMD7	90167	genome.wustl.edu	37	X	131212887	131212887	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_194277.2	-1	reviewed	p.E386	1.000	486	0%	367	12.8%	0	-	-	-	-	NULL
RAP2C	57826	genome.wustl.edu	37	X	131351272	131351272	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_021183.3	-1	provisional	p.L9	1.000	331	0%	175	38.3%	3	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MBNL3	55796	genome.wustl.edu	37	X	131515410	131515410	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_133486.2	-1	reviewed	p.Q333	1.000	122	0%	87	23%	3	0%	-	-	-	NULL
USP26	83844	genome.wustl.edu	37	X	132160082	132160082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_031907.1	-1	reviewed	p.D723Y	0.004	319	0%	287	28.6%	0	-	benign(0.021)	deleterious(0.03)	neutral(0.365)	HMMPfam_UCH,superfamily_Cysteine proteinases
GPC4	2239	genome.wustl.edu	37	X	132548924	132548924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001448.2	-1	reviewed	p.E24K	1.000	39	0%	27	51.9%	3	0%	possibly_damaging(0.69)	tolerated(0.18)	neutral(0.303)	HMMPfam_Glypican
GPC3	2719	genome.wustl.edu	37	X	132887968	132887968	+	Silent	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004484.3	-1	reviewed	p.A191	0.251	459	0%	352	26.7%	0	-	-	-	-	HMMPfam_Glypican
CCDC160	347475	genome.wustl.edu	37	X	133378857	133378857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001101357.1	+1	provisional	p.K9N	0.481	39	0%	26	23.1%	7	0%	possibly_damaging(0.839)	tolerated(0.23)	neutral(0.362)	NULL
PHF6	84295	genome.wustl.edu	37	X	133551261	133551261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001015877.1	+1	reviewed	p.K299N	1.000	112	0%	78	12.8%	8	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger
FAM122B	159090	genome.wustl.edu	37	X	133930188	133930188	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_145284.5	-1	validated	p.Y16	0.213	66	0%	56	19.6%	3	0%	-	-	-	NULL
MOSPD1	56180	genome.wustl.edu	37	X	134030870	134030870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_019556.1	-1	provisional	p.F142C	1.000	251	0%	172	38.4%	7	0%	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	NULL
LOC728470	728470	genome.wustl.edu	37	X	134326940	134326940	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343844.1	-1	model	p.S56	0.001	169	0%	126	31.7%	0	-	-	-	-	NULL
LOC650024	650024	genome.wustl.edu	37	X	134335694	134335694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_001715421.2	+1	model	p.S16L	0.001	61	0%	60	25%	0	-	-	-	-	NULL
ZNF75D	7626	genome.wustl.edu	37	X	134421611	134421611	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_007131.3	-1	reviewed	p.R331*	0.002	319	0%	254	34.6%	2	0%	-	-	-	NULL
ZNF449	203523	genome.wustl.edu	37	X	134494561	134494561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152695.5	+1	reviewed	p.H373N	0.965	358	0%	308	26.9%	9	77.7%	possibly_damaging(0.776)	deleterious(0)	deleterious(0.734)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DDX26B	203522	genome.wustl.edu	37	X	134713790	134713790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_182540.4	+1	validated	p.S696T	0.787	224	0%	223	23.8%	0	-	benign(0.015)	tolerated(0.63)	neutral(0.004)	NULL
LOC644717	644717	genome.wustl.edu	37	X	134773605	134773605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343850.1	-1	model	p.N827T	0.001	246	0%	185	30.3%	0	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134808478	134808478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343850.1	-1	model	p.D473Y	0.015	100	0%	87	25.3%	0	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134808932	134808932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343850.1	-1	model	p.P405S	0.002	86	0%	53	50.9%	0	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134811255	134811255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	XM_002343850.1	-1	model	p.L185V	0.041	60	0%	42	47.6%	0	-	-	-	-	NULL
SAGE1	55511	genome.wustl.edu	37	X	134988588	134988588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018666.2	+1	reviewed	p.N205S	0.012	232	0%	246	31.7%	0	-	benign(0.154)	deleterious(0)	neutral(0.458)	NULL
SAGE1	55511	genome.wustl.edu	37	X	134991046	134991046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018666.2	+1	reviewed	p.R489C	0.007	183	0%	223	27.8%	0	-	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	NULL
SLC9A6	10479	genome.wustl.edu	37	X	135126619	135126619	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001042537.1	+1	reviewed	p.E614	0.856	125	0%	110	30%	4	0%	-	-	-	NULL
FHL1	2273	genome.wustl.edu	37	X	135290787	135290787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001449.4	+1	reviewed	p.K225N	1.000	330	0%	277	26%	5	0%	benign(0.01)	tolerated(0.32)	neutral(0.025)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
GPR112	139378	genome.wustl.edu	37	X	135427607	135427607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153834.3	+1	reviewed	p.R581H	0.000	732	0%	718	30.9%	0	-	benign(0)	tolerated(1)	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135429713	135429713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153834.3	+1	reviewed	p.S1283Y	0.000	646	0%	621	31.4%	0	-	possibly_damaging(0.911)	deleterious(0.03)	deleterious(0.728)	NULL
GPR112	139378	genome.wustl.edu	37	X	135432563	135432563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153834.3	+1	reviewed	p.S2233L	0.000	245	0%	150	36%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
GPR112	139378	genome.wustl.edu	37	X	135441466	135441466	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_153834.3	+1	reviewed	p.V2332	0.637	695	0%	557	22.4%	0	-	-	-	-	NULL
BRS3	680	genome.wustl.edu	37	X	135572320	135572320	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001727.1	+1	validated	p.R155*	0.985	148	0%	183	24.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CD40LG	959	genome.wustl.edu	37	X	135738536	135738536	+	Missense_Mutation	SNP	C	C	T	rs104894778	byCluster	TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000074.2	+1	reviewed	p.A123V	0.992	419	0%	302	31.5%	2	0%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMSmart_TNF,superfamily_TNF_like
CD40LG	959	genome.wustl.edu	37	X	135741396	135741396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000074.2	+1	reviewed	p.R203I	1.000	1680	0%	1555	34.9%	0	-	benign(0.232)	deleterious(0.01)	neutral(0.429)	HMMPfam_TNF,HMMSmart_TNF,superfamily_TNF_like
ARHGEF6	9459	genome.wustl.edu	37	X	135767904	135767904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004840.2	-1	reviewed	p.E442K	1.000	156	0%	156	26.9%	0	-	benign(0.054)	deleterious(0.02)	neutral(0.387)	superfamily_PH domain-like
ZIC3	7547	genome.wustl.edu	37	X	136649580	136649580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003413.3	+1	reviewed	p.R244W	1.000	59	0%	40	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
F9	2158	genome.wustl.edu	37	X	138642966	138642966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000133.3	+1	reviewed	p.T264A	1.000	311	0%	225	30.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
MCF2	4168	genome.wustl.edu	37	X	138678814	138678814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099855.1	-1	reviewed	p.R784Q	1.000	269	0%	269	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
MCF2	4168	genome.wustl.edu	37	X	138687892	138687892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099855.1	-1	reviewed	p.E573K	1.000	690	0%	472	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ATP11C	286410	genome.wustl.edu	37	X	138878621	138878621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173694.4	-1	validated	p.K342N	1.000	169	0%	112	33.9%	0	-	possibly_damaging(0.594)	tolerated(0.36)	neutral(0.225)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138879464	138879464	+	Silent	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173694.4	-1	validated	p.I296	0.974	161	0%	142	35.2%	1	0%	-	-	-	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140969300	140969300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138702.1	+1	reviewed	p.E209D	0.007	379	0%	360	28.3%	0	-	unknown(0)	tolerated(0.42)	-	HMMPfam_MAGE
MAGEC3	139081	genome.wustl.edu	37	X	140983078	140983078	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_138702.1	+1	reviewed	p.F311	0.000	123	0%	80	30%	0	-	-	-	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140995488	140995488	+	Silent	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005462.4	+1	reviewed	p.P766	0.850	659	0.2%	551	30.7%	0	-	-	-	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140995945	140995945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005462.4	+1	reviewed	p.L919I	0.001	438	0%	358	29.3%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_MAGE
MAGEC2	51438	genome.wustl.edu	37	X	141291752	141291752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_016249.3	-1	reviewed	p.P8S	0.001	424	0%	410	13.4%	0	-	possibly_damaging(0.771)	deleterious(0)	deleterious(0.731)	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142716681	142716681	+	Silent	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173078.3	-1	reviewed	p.E748	0.998	289	0%	198	27.8%	0	-	-	-	-	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142716711	142716711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173078.3	-1	reviewed	p.K738N	1.000	281	0%	210	31%	0	-	possibly_damaging(0.78)	tolerated(0.3)	neutral(0.320)	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142718065	142718065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173078.3	-1	reviewed	p.P287L	1.000	140	0%	132	34.1%	0	-	benign(0.275)	deleterious(0.01)	neutral(0.435)	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142718389	142718389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173078.3	-1	reviewed	p.S179Y	1.000	198	0%	160	33.1%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144905448	144905448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144003.2	+1	reviewed	p.R502I	1.000	170	0%	152	27%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144905883	144905883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001144003.2	+1	reviewed	p.R647Q	1.000	198	0%	161	24.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MIR890	100126303	genome.wustl.edu	37	X	145075818	145075818	+	RNA	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000401256	-1	known	NULL	0.000	390	0%	239	33.5%	0	-	-	-	-	-
FMR1	2332	genome.wustl.edu	37	X	147014062	147014062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002024.5	+1	reviewed	p.V250A	1.000	299	0%	318	28.6%	34	0%	benign(0.36)	deleterious(0)	deleterious(0.559)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
AFF2	2334	genome.wustl.edu	37	X	147733570	147733570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002025.3	+1	reviewed	p.R33M	1.000	520	0%	435	14.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	147743980	147743980	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_002025.3	+1	reviewed	p.F244	0.938	706	0%	579	34%	0	-	-	-	-	HMMPfam_AF-4
MAGEA11	4110	genome.wustl.edu	37	X	148798434	148798434	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005366.4	+1	reviewed	p.*430G	0.001	157	0%	138	37.7%	1	0%	-	-	-	NULL
MAMLD1	10046	genome.wustl.edu	37	X	149638177	149638177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005491.3	+1	reviewed	p.P111H	0.151	296	0%	352	27.6%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
MTMR1	8776	genome.wustl.edu	37	X	149896165	149896165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_003828.2	+1	reviewed	p.F145V	1.000	166	0%	135	29.6%	7	0%	possibly_damaging(0.948)	tolerated(0.55)	neutral(0.398)	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
MTMR1	8776	genome.wustl.edu	37	X	149931091	149931091	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000445323	+1	known	p.E163*	1.000	77	0%	76	27.6%	18	0%	benign(0.096)	tolerated(0.5)	neutral(0.017)	NULL
GPR50	9248	genome.wustl.edu	37	X	150348829	150348829	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004224.3	+1	reviewed	p.V258	1.000	352	0%	365	30.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
VMA21	203547	genome.wustl.edu	37	X	150572170	150572170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001017980.3	+1	reviewed	p.P41T	1.000	339	0%	227	27.8%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VMA21
PASD1	139135	genome.wustl.edu	37	X	150791516	150791516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173493.2	+1	reviewed	p.L176I	0.000	261	0.4%	193	32.1%	0	-	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	NULL
PASD1	139135	genome.wustl.edu	37	X	150840886	150840886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_173493.2	+1	reviewed	p.E557K	0.000	89	0%	90	22.2%	0	-	unknown(0)	deleterious(0.01)	-	NULL
CNGA2	1260	genome.wustl.edu	37	X	150912737	150912737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005140.1	+1	reviewed	p.E588K	0.625	292	0%	277	29.6%	0	-	benign(0)	tolerated(0.95)	-	NULL
GABRE	2564	genome.wustl.edu	37	X	151123215	151123215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004961.3	-1	reviewed	p.F493L	0.011	61	0%	62	29%	0	-	possibly_damaging(0.946)	tolerated(0.24)	neutral(0.427)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA3	2556	genome.wustl.edu	37	X	151358340	151358340	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000808.3	-1	reviewed	p.A335	1.000	203	0%	136	41.2%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA3	2556	genome.wustl.edu	37	X	151453183	151453183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000808.3	-1	reviewed	p.D96G	1.000	252	0%	226	27%	0	-	benign(0.059)	deleterious(0)	neutral(0.449)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA3	2556	genome.wustl.edu	37	X	151514097	151514097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000808.3	-1	reviewed	p.R73H	1.000	206	0%	275	36%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRQ	55879	genome.wustl.edu	37	X	151821263	151821263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018558.2	+1	reviewed	p.A473D	0.000	216	0%	245	34.3%	0	-	benign(0.072)	deleterious(0)	neutral(0.450)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRQ	55879	genome.wustl.edu	37	X	151821639	151821639	+	Silent	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_018558.2	+1	reviewed	p.L598	0.208	230	0%	227	33%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CSAG1	158511	genome.wustl.edu	37	X	151904511	151904511	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102576.1	+1	reviewed	p.A3	0.001	228	0%	170	31.8%	0	-	-	-	-	NULL
CSAG1	158511	genome.wustl.edu	37	X	151909176	151909176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001102576.1	+1	reviewed	p.K69E	0.001	504	0%	408	28.4%	1	100%	benign(0.004)	-	-	NULL
CETN2	1069	genome.wustl.edu	37	X	151997151	151997151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_004344.1	-1	reviewed	p.K120T	0.963	175	0%	222	25.7%	171	0%	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
ZNF275	10838	genome.wustl.edu	37	X	152612687	152612687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001080485.2	+1	validated	p.E182K	0.300	287	0%	277	27.8%	1	0%	possibly_damaging(0.882)	tolerated(0.28)	neutral(0.376)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HAUS7	55559	genome.wustl.edu	37	X	152734672	152734672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_017518.6	-1	reviewed	p.K62N	0.009	74	0%	174	10.9%	18	77.7%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	NULL
BGN	633	genome.wustl.edu	37	X	152772344	152772344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001711.4	+1	reviewed	p.E245K	1.000	125	0%	125	27.2%	1066	2.2%	benign(0.031)	tolerated(0.11)	neutral(0.273)	superfamily_SSF52058
FAM58A	92002	genome.wustl.edu	37	X	152853730	152853730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000428722	-1	known	p.R106M	0.870	52	0%	54	33.3%	53	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
FAM58A	92002	genome.wustl.edu	37	X	152860071	152860071	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_152274.3	-1	reviewed	p.R121C	0.165	84	0%	65	20%	68	1.4%	-	-	-	NULL
PNCK	139728	genome.wustl.edu	37	X	152938101	152938101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000411968	-1	known	p.S30L	0.658	40	0%	36	30.6%	0	-	benign(0.005)	-	-	NULL
PDZD4	57595	genome.wustl.edu	37	X	153070657	153070657	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_032512.2	-1	provisional	p.A219	0.701	30	0%	16	31.2%	0	-	-	-	-	superfamily_PDZ domain-like
L1CAM	3897	genome.wustl.edu	37	X	153128961	153128961	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000425.3	-1	reviewed	p.P1167	0.039	24	0%	24	29.2%	60	0%	-	-	-	NULL
L1CAM	3897	genome.wustl.edu	37	X	153130107	153130107	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000425.3	-1	reviewed	p.V1033	0.002	104	0%	124	37.1%	44	93.1%	-	-	-	superfamily_Fibronectin type III
AVPR2	554	genome.wustl.edu	37	X	153171297	153171297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000054.4	+1	reviewed	p.R113W	1.000	41	0%	59	39%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGAP4	393	genome.wustl.edu	37	X	153178166	153178166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001666.4	-1	reviewed	p.E510D	0.997	67	0%	56	44.6%	13	0%	benign(0.378)	tolerated(0.26)	neutral(0.154)	superfamily_Rho_GAP
HCFC1	3054	genome.wustl.edu	37	X	153223312	153223312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005334.2	-1	reviewed	p.S685L	1.000	49	0%	64	48.4%	9	55.5%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
OPN1LW	5956	genome.wustl.edu	37	X	153416136	153416136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_020061.4	+1	reviewed	p.E41K	0.997	389	0%	364	30.8%	0	-	benign(0.211)	deleterious(0)	neutral(0.465)	superfamily_SSF81321
OPN1MW	2652	genome.wustl.edu	37	X	153453454	153453454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000513.2	+1	reviewed	p.T103I	0.998	251	0%	276	17%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OPN1MW	2652	genome.wustl.edu	37	X	153461521	153461521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000513.2	+1	reviewed	p.S362L	0.995	253	0%	209	10.5%	0	-	unknown(0)	deleterious(0)	-	superfamily_SSF81321
FLNA	2316	genome.wustl.edu	37	X	153593614	153593614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	ENST00000420627	-1	known	p.R500C	0.031	23	0%	23	39.1%	70	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMSmart_SM00557
FLNA	2316	genome.wustl.edu	37	X	153595131	153595131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001110556.1	-1	reviewed	p.Y319C	0.984	12	0%	15	26.7%	61	0%	probably_damaging(0.957)	tolerated(0.15)	deleterious(0.641)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
EMD	2010	genome.wustl.edu	37	X	153609119	153609119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000117.2	+1	reviewed	p.D136Y	0.005	18	0%	17	35.3%	238	0%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
RPL10	6134	genome.wustl.edu	37	X	153628932	153628932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_006013.3	+1	reviewed	p.R153C	0.996	89	0%	89	37.1%	2339	64.9%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e
TAZ	6901	genome.wustl.edu	37	X	153648053	153648053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000116.3	+1	reviewed	p.N184S	1.000	120	0%	161	29.8%	9	0%	possibly_damaging(0.856)	deleterious(0.01)	deleterious(0.736)	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
IKBKG	8517	genome.wustl.edu	37	X	153770627	153770627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001099856.2	+1	reviewed	p.R50H	0.000	44	0%	37	29.7%	0	-	unknown(0)	-	-	NULL
GAB3	139716	genome.wustl.edu	37	X	153924198	153924198	+	Silent	SNP	G	G	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001081573.1	-1	reviewed	p.I508	1.000	95	0%	86	36%	0	-	-	-	-	NULL
DKC1	1736	genome.wustl.edu	37	X	154003507	154003507	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001363.3	+1	reviewed	p.K433Q	0.000	261	0%	250	25.6%	66	0%	benign(0.418)	tolerated(0.46)	neutral(0.148)	NULL
F8	2157	genome.wustl.edu	37	X	154124487	154124487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000132.3	-1	reviewed	p.M2098I	1.000	401	0%	418	34%	0	-	benign(0.046)	deleterious(0.01)	neutral(0.408)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,superfamily_Galactose-binding domain-like
F8	2157	genome.wustl.edu	37	X	154132674	154132674	+	Silent	SNP	C	C	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000132.3	-1	reviewed	p.E1904	1.000	561	0%	575	31.3%	0	-	-	-	-	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154157369	154157369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000132.3	-1	reviewed	p.L1566M	0.002	738	0%	765	27.1%	0	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	NULL
F8	2157	genome.wustl.edu	37	X	154159768	154159768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000132.3	-1	reviewed	p.R766I	0.613	584	0%	524	32.6%	0	-	possibly_damaging(0.931)	deleterious(0.01)	deleterious(0.783)	NULL
F8	2157	genome.wustl.edu	37	X	154185254	154185254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_000132.3	-1	reviewed	p.S577Y	1.000	767	0%	713	27.5%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_Cupredoxins
CLIC2	1193	genome.wustl.edu	37	X	154528409	154528409	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001289.4	-1	reviewed	p.L36R	1.000	394	0%	323	26%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thioredoxin-like
CLIC2	1193	genome.wustl.edu	37	X	154563699	154563699	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_001289.4	-1	reviewed	p.E13A	1.000	674	0%	517	21.9%	3	0%	benign(0.058)	tolerated(0.39)	neutral(0.019)	superfamily_Thioredoxin-like
VAMP7	6845	genome.wustl.edu	37	X	155119254	155119254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A056-01A-11W-A027-09	TCGA-AP-A056-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a8d74a53-1956-4a1a-9dbb-81151ebb79da	b4c6d00f-748d-4152-8191-408ca932f2c0	NM_005638.4	+1	validated	p.K42T	1.000	277	0%	244	26.2%	14	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SNARE-like
