Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AASDHPPT	60496	genome.wustl.edu	37	11	105948464	105948464	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	105948464	105948464	C	G	SNP	AASDHPPT	NM_015423.2	human	genbank	58_37c	+1	reviewed	missense	c.27	p.C9W	0.047	NULL	HMMPfam_ACPS,superfamily_4-PPT_transf	-	no_errors
ABCC8	6833	genome.wustl.edu	37	11	17498260	17498260	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	17498260	17498260	G	A	SNP	ABCC8	NM_000352.3	human	genbank	58_37c	-1	reviewed	missense	c.64	p.L22F	1.000	NULL	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
APOBEC2	10930	genome.wustl.edu	37	6	41029366	41029367	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	41029366	41029367	-	CC	INS	APOBEC2	NM_006789.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.431_432	p.L145fs	1.000:1.000	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like	HMMPfam_APOBEC_C,HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like	-	no_errors
ATG2B	55102	genome.wustl.edu	37	14	96779679	96779679	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	14	96779679	96779679	C	A	SNP	ATG2B	NM_018036.5	human	genbank	58_37c	-1	validated	missense	c.3736	p.A1246S	1.000	NULL	HMMPfam_ATG_C	-	no_errors
ATN1	1822	genome.wustl.edu	37	12	7048007	7048007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	12	7048007	7048007	C	T	SNP	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	missense	c.2881	p.H961Y	0.614	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
BACH1	571	genome.wustl.edu	37	21	30699407	30699407	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	21	30699407	30699407	C	T	SNP	BACH1	NM_001186.2	human	genbank	58_37c	+1	reviewed	missense	c.1262	p.A421V	0.951	NULL	HMMSmart_SM00225,HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,superfamily_POZ domain,HMMPfam_bZIP_1,HMMPfam_BTB	-	no_errors
C1orf192	257177	genome.wustl.edu	37	1	161337629	161337630	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	161337629	161337630	-	A	INS	C1orf192	NM_001013625.2	human	genbank	58_37c	-1	predicted	splice_site_ins	c.27+2_27+1	e1+2	0.958:1.000	-	-	-	no_errors
CCPG1	9236	genome.wustl.edu	37	15	55681620	55681620	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	15	55681620	55681620	C	G	SNP	CCPG1	NM_004748.3	human	genbank	58_37c	-1	validated	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors
CNPY3	10695	genome.wustl.edu	37	6	42906359	42906359	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	42906359	42906359	G	C	SNP	CNPY3	NM_006586.3	human	genbank	58_37c	+1	validated	missense	c.667	p.G223R	0.997	NULL	NULL	-	no_errors
CORO7	79585	genome.wustl.edu	37	16	4458194	4458194	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	16	4458194	4458194	C	A	SNP	CORO7	NM_024535.3	human	genbank	58_37c	-1	validated	silent	c.291	p.S97	0.226	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_DUF1900,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CUL9	23113	genome.wustl.edu	37	6	43166502	43166502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	43166502	43166502	C	T	SNP	CUL9	NM_015089.2	human	genbank	58_37c	+1	validated	missense	c.2959	p.R987C	1.000	superfamily_ARM repeat	"HMMPfam_Cullin,HMMPfam_IBR,HMMSmart_SM00647,HMMPfam_APC10,superfamily_Galactose-binding domain-like,superfamily_ARM repeat,PatternScan_CULLIN_1,superfamily_Cullin homology domain,PatternScan_ZF_RING_1,PatternScan_CYTOCHROME_P450,superfamily_""Winged helix"" DNA-binding domain,superfamily_RING/U-box"	-	no_errors
DCC	1630	genome.wustl.edu	37	18	50985621	50985621	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	18	50985621	50985621	G	A	SNP	DCC	NM_005215.3	human	genbank	58_37c	+1	reviewed	missense	c.3412	p.A1138T	0.998	HMMPfam_Neogenin_C	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Neogenin_C,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
DKFZp761E198	91056	genome.wustl.edu	37	11	65545388	65545391	+	Frame_Shift_Del	DEL	TCGG	TCGG	-	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	TCGG	TCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	65545388	65545391	TCGG	-	DEL	DKFZp761E198	NM_138368.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.2405_2402	p.T801fs	0.358:0.353:0.075:0.964	NULL	NULL	-	no_errors
DNAH7	56171	genome.wustl.edu	37	2	196749476	196749476	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	196749476	196749476	G	A	SNP	DNAH7	NM_018897.2	human	genbank	58_37c	-1	validated	nonsense	c.5596	p.R1866*	1.000	NULL	PatternScan_ADH_SHORT,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,PatternScan_EF_HAND_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DND1	373863	genome.wustl.edu	37	5	140050940	140050940	+	Missense_Mutation	SNP	C	T	T	rs141761293	byFrequency	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	5	140050940	140050940	C	T	SNP	DND1	NM_194249.1	human	genbank	58_37c	-1	provisional	missense	c.1000	p.E334K	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
DRD5	1816	genome.wustl.edu	37	4	9784550	9784550	+	Silent	SNP	G	G	A	rs2227844	byCluster;byFrequency	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	4	9784550	9784550	G	A	SNP	DRD5	NM_000798.4	human	genbank	58_37c	+1	reviewed	silent	c.897	p.S299	0.303	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ENSG00000221243	0	genome.wustl.edu	37	6	3177621	3177621	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	3177621	3177621	G	A	SNP	ENSG00000221243	ENST00000408316	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.998	-	-	-	no_errors
FLII	2314	genome.wustl.edu	37	17	18155040	18155040	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	18155040	18155040	A	C	SNP	FLII	NM_002018.2	human	genbank	58_37c	-1	reviewed	missense	c.1337	p.L446R	1.000	superfamily_SSF55753	HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF52047,superfamily_SSF52058,superfamily_SSF55753	-	no_errors
FLT1	2321	genome.wustl.edu	37	13	28896410	28896410	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	13	28896410	28896410	A	G	SNP	FLT1	NM_002019.4	human	genbank	58_37c	-1	reviewed	missense	c.3040	p.S1014P	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
FNIP1	96459	genome.wustl.edu	37	5	131046309	131046309	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	5	131046309	131046309	C	A	SNP	FNIP1	NM_133372.2	human	genbank	58_37c	-1	validated	missense	c.668	p.G223V	1.000	NULL	NULL	-	no_errors
GAB4	128954	genome.wustl.edu	37	22	17468927	17468927	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	22	17468927	17468927	C	T	SNP	GAB4	NM_001037814.1	human	genbank	58_37c	-1	provisional	silent	c.609	p.P203	0.533	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
GREB1L	80000	genome.wustl.edu	37	18	19102675	19102675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	18	19102675	19102675	C	T	SNP	GREB1L	NM_001142966.1	human	genbank	58_37c	+1	provisional	missense	c.5665	p.R1889C	1.000	NULL	PatternScan_ASP_PROTEASE	-	no_errors
HOXD11	3237	genome.wustl.edu	37	2	176973668	176973668	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	176973668	176973668	C	A	SNP	HOXD11	NM_021192.2	human	genbank	58_37c	+1	reviewed	missense	c.815	p.P272H	1.000	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
IPO13	9670	genome.wustl.edu	37	1	44413299	44413299	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	44413299	44413299	G	T	SNP	IPO13	NM_014652.3	human	genbank	58_37c	+1	reviewed	silent	c.27	p.G9	1.000	NULL	HMMPfam_IBN_N,HMMPfam_Xpo1,superfamily_ARM-type_fold	-	no_errors
KCNQ3	3786	genome.wustl.edu	37	8	133142049	133142049	+	Silent	SNP	C	C	T	rs145204452	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	8	133142049	133142049	C	T	SNP	KCNQ3	NM_004519.2	human	genbank	58_37c	-1	reviewed	silent	c.2079	p.P693	0.003	NULL	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_SSF81324	-	no_errors
LIPT2	387787	genome.wustl.edu	37	11	74203306	74203306	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	74203306	74203306	T	G	SNP	LIPT2	NM_001144869.1	human	genbank	58_37c	-1	validated	silent	c.570	p.T190	0.853	NULL	PatternScan_LIPB,HMMPfam_BPL_LipA_LipB	-	no_errors
LOC100288715	0	genome.wustl.edu	37	9	34552057	34552057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	9	34552057	34552057	G	A	SNP	LOC100288715	XM_002342889.1	human	genbank	58_37c	+1	model	missense	c.100	p.G34R	0.004	NULL	NULL	-	no_errors
LRRC41	10489	genome.wustl.edu	37	1	46746855	46746855	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	46746855	46746855	A	-	DEL	LRRC41	NM_006369.4	human	genbank	58_37c	-1	validated	frame_shift_del	c.1698	p.G567fs	0.983	superfamily_RNI-like	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9074465	9074465	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	9074465	9074465	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.12981	p.V4327	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYO18A	399687	genome.wustl.edu	37	17	27401792	27401792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	27401792	27401792	G	A	SNP	MYO18A	NM_078471.3	human	genbank	58_37c	-1	validated	missense	c.6161	p.A2054V	0.687	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NWD1	284434	genome.wustl.edu	37	19	16918910	16918910	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	16918910	16918910	T	C	SNP	NWD1	NM_001007525.2	human	genbank	58_37c	+1	validated	missense	c.3845	p.L1282P	0.997	superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OR51C1P	0	genome.wustl.edu	37	11	4712725	4712725	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	4712725	4712725	C	T	SNP	OR51C1P	ENST00000357764	human	ensembl	58_37c	-1	known	missense	c.202	p.A68T	0.074	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PARD3	56288	genome.wustl.edu	37	10	34400454	34400454	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	10	34400454	34400454	G	C	SNP	PARD3	NM_019619.3	human	genbank	58_37c	-1	validated	missense	c.3714	p.D1238E	0.952	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PIP5K1C	23396	genome.wustl.edu	37	19	3643289	3643289	+	Missense_Mutation	SNP	G	G	A	rs145403606	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	3643289	3643289	G	A	SNP	PIP5K1C	NM_012398.1	human	genbank	58_37c	-1	reviewed	missense	c.1601	p.S534F	1.000	NULL	HMMPfam_PIP5K,HMMSmart_PIPKc,superfamily_SSF56104	-	no_errors
PLD5	200150	genome.wustl.edu	37	1	242287770	242287770	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	242287770	242287770	C	T	SNP	PLD5	NM_152666.1	human	genbank	58_37c	-1	provisional	silent	c.657	p.S219	1.000	HMMPfam_PLD_envelope	HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024	-	no_errors
PREX1	57580	genome.wustl.edu	37	20	47296244	47296244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	20	47296244	47296244	C	T	SNP	PREX1	NM_020820.3	human	genbank	58_37c	-1	reviewed	missense	c.1484	p.R495H	1.000	"HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
RB1	5925	genome.wustl.edu	37	13	48934189	48934189	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	13	48934189	48934189	C	G	SNP	RB1	NM_000321.2	human	genbank	58_37c	+1	reviewed	nonsense	c.644	p.S215*	1.000	NULL	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C	-	no_errors
RNF144A	9781	genome.wustl.edu	37	2	7179763	7179763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	7179763	7179763	G	A	SNP	RNF144A	NM_014746.3	human	genbank	58_37c	+1	reviewed	missense	c.751	p.V251M	1.000	HMMSmart_RING	HMMSmart_RING,HMMPfam_IBR,HMMSmart_IBR,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
S1PR2	9294	genome.wustl.edu	37	19	10334727	10334727	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	10334727	10334727	G	A	SNP	S1PR2	NM_004230.3	human	genbank	58_37c	-1	validated	silent	c.855	p.P285	0.152	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
SEMA3A	10371	genome.wustl.edu	37	7	83823815	83823815	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	7	83823815	83823815	G	C	SNP	SEMA3A	NM_006080.2	human	genbank	58_37c	-1	reviewed	missense	c.88	p.P30A	1.000	superfamily_Sema	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMSmart_IG,HMMSmart_PSI,HMMPfam_ig,superfamily_Plexin-like_fold,superfamily_SSF48726	-	no_errors
SGK223	0	genome.wustl.edu	37	8	8234980	8234980	+	Missense_Mutation	SNP	G	C	C	rs35273161	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	8	8234980	8234980	G	C	SNP	SGK223	NM_001080826.1	human	genbank	58_37c	-1	validated	missense	c.939	p.S313R	0.017	NULL	HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)	-	no_errors
SPDEF	25803	genome.wustl.edu	37	6	34506131	34506131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	34506131	34506131	G	A	SNP	SPDEF	NM_012391.1	human	genbank	58_37c	-1	provisional	missense	c.928	p.R310C	1.000	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SAM_homology,superfamily_SSF46785	-	no_errors
SPTA1	6708	genome.wustl.edu	37	1	158615165	158615165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	158615165	158615165	G	A	SNP	SPTA1	NM_003126.2	human	genbank	58_37c	-1	reviewed	missense	c.4007	p.A1336V	0.950	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
STIM1	6786	genome.wustl.edu	37	11	4091418	4091418	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	4091418	4091418	A	G	SNP	STIM1	NM_003156.3	human	genbank	58_37c	+1	reviewed	missense	c.776	p.H259R	1.000	NULL	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2,PatternScan_EF_HAND_1	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7574003	7574003	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	7574003	7574003	G	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1024	p.R342fs	0.307	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
WWP2	11060	genome.wustl.edu	37	16	69972999	69972999	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	16	69972999	69972999	C	-	DEL	WWP2	NM_007014.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2413	p.V806fs	1.000	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
ZBTB33	10009	genome.wustl.edu	37	X	119389284	119389285	+	Frame_Shift_Ins	INS	-	-	TA	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	X	119389284	119389285	-	TA	INS	ZBTB33	NM_006777.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.2014_2015	p.Y672fs	1.000:1.000	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF726	0	genome.wustl.edu	37	19	24116016	24116016	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	24116016	24116016	G	C	SNP	ZNF726	ENST00000322487	human	ensembl	58_37c	+1	known	missense	c.1098	p.E366D	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
