Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AHCY	0	genome.wustl.edu	37	20	32868859	32868859	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	32868859	32868859	G	A	SNP	AHCY	NM_000687.2	human	genbank	58_37c	-1	reviewed	missense	c.1280	p.P427L	1.000	HMMPfam_AdoHcyase,superfamily_Formate/glycerate dehydrogenase catalytic domain-like	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_ADOHCYASE_1,PatternScan_ADOHCYASE_2,superfamily_Formate/glycerate dehydrogenase catalytic domain-like	-	no_errors
ALX1	0	genome.wustl.edu	37	12	85680747	85680747	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	12	85680747	85680747	C	A	SNP	ALX1	NM_006982.2	human	genbank	58_37c	+1	reviewed	missense	c.648	p.D216E	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_OAR,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
APOB	0	genome.wustl.edu	37	2	21245741	21245741	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	21245741	21245741	A	C	SNP	APOB	NM_000384.2	human	genbank	58_37c	-1	reviewed	missense	c.2778	p.I926M	0.875	HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain	-	no_errors
ARID4B	0	genome.wustl.edu	37	1	235346022	235346032	+	Frame_Shift_Del	DEL	TCTTAGATTCC	TCTTAGATTCC	-	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	TCTTAGATTCC	TCTTAGATTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	235346022	235346032	TCTTAGATTCC	-	DEL	ARID4B	NM_016374.5	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2212_2202	p.E734fs	0.000:0.118:0.226:0.177:0.149:0.197:0.204:0.264:0.997:0.998:0.967	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00333,HMMPfam_RBB1NT	-	no_errors
C20orf103	0	genome.wustl.edu	37	20	9498735	9498735	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	9498735	9498735	C	G	SNP	C20orf103	NM_012261.2	human	genbank	58_37c	+1	validated	missense	c.524	p.P175R	1.000	HMMPfam_Lamp	HMMPfam_Lamp,PatternScan_LAMP_1	-	no_errors
CADM4	0	genome.wustl.edu	37	19	44129369	44129375	+	Frame_Shift_Del	DEL	CTCATTC	CTCATTC	-	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	CTCATTC	CTCATTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	19	44129369	44129375	CTCATTC	-	DEL	CADM4	NM_145296.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.789_783	p.N262fs	1.000:1.000:1.000:0.999:1.000:1.000:0.988	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	HMMSmart_4.1m,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_SSF48726	-	no_errors
CCDC78	0	genome.wustl.edu	37	16	775286	775286	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	16	775286	775286	G	A	SNP	CCDC78	NM_001031737.2	human	genbank	58_37c	-1	validated	missense	c.443	p.P148L	0.013	NULL	NULL	-	no_errors
CCDC80	0	genome.wustl.edu	37	3	112357487	112357487	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	112357487	112357487	C	T	SNP	CCDC80	NM_199511.1	human	genbank	58_37c	-1	validated	silent	c.1266	p.Q422	0.320	NULL	NULL	-	no_errors
CD53	0	genome.wustl.edu	37	1	111435055	111435055	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	111435055	111435055	C	G	SNP	CD53	NM_000560.3	human	genbank	58_37c	+1	reviewed	missense	c.152	p.T51R	0.999	HMMPfam_Tetraspannin	superfamily_Tetraspanin,HMMPfam_Tetraspannin,PatternScan_TM4_1	-	no_errors
CD5L	0	genome.wustl.edu	37	1	157805923	157805923	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	157805923	157805923	C	A	SNP	CD5L	NM_005894.2	human	genbank	58_37c	-1	validated	silent	c.78	p.L26	0.999	HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
CD72	0	genome.wustl.edu	37	9	35612972	35612972	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	9	35612972	35612972	C	G	SNP	CD72	NM_001782.2	human	genbank	58_37c	-1	validated	missense	c.707	p.G236A	0.998	HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
CDC27	0	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C	rs140737545	byFrequency	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	17	45219311	45219311	T	C	SNP	CDC27	NM_001114091.1	human	genbank	58_37c	-1	reviewed	missense	c.1477	p.I493V	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
CHRNB4	0	genome.wustl.edu	37	15	78927917	78927917	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	78927917	78927917	A	G	SNP	CHRNB4	NM_000750.3	human	genbank	58_37c	-1	validated	missense	c.68	p.V23A	0.542	NULL	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
DCAF6	0	genome.wustl.edu	37	1	168044671	168044671	+	Nonstop_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	168044671	168044671	T	A	SNP	DCAF6	NM_018442.2	human	genbank	58_37c	+1	validated	nonstop	c.2641	p.*881K	0.355	NULL	HMMSmart_IQ,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	-	no_errors
DYNC2H1	0	genome.wustl.edu	37	11	103116068	103116069	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	103116068	103116069	TT	-	DEL	DYNC2H1	NM_001080463.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.10028_10029	p.Y3344fs	1.000:0.983	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DYNC2H1	0	genome.wustl.edu	37	11	103116072	103116073	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	103116072	103116073	TC	-	DEL	DYNC2H1	NM_001080463.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.10032_10033	p.P3345fs	1.000:1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000236623	0	genome.wustl.edu	37	10	42383490	42383490	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	10	42383490	42383490	G	C	SNP	ENSG00000236623	ENST00000423802	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000249291	0	genome.wustl.edu	37	12	92920	92920	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	12	92920	92920	C	G	SNP	ENSG00000249291	ENST00000515242	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.982	-	-	-	no_errors
ETV5	0	genome.wustl.edu	37	3	185783746	185783746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	185783746	185783746	G	A	SNP	ETV5	NM_004454.2	human	genbank	58_37c	-1	validated	missense	c.766	p.P256S	1.000	HMMPfam_ETS_PEA3_N	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_ETS_PEA3_N,superfamily_SSF46785	-	no_errors
FGA	0	genome.wustl.edu	37	4	155507138	155507138	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	155507138	155507138	T	G	SNP	FGA	NM_000508.3	human	genbank	58_37c	-1	reviewed	missense	c.1443	p.E481D	0.995	NULL	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fib_alpha	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29623210	29623210	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	29623210	29623210	C	T	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.22	p.H8Y	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
HAPLN3	0	genome.wustl.edu	37	15	89424727	89424727	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	89424727	89424727	G	A	SNP	HAPLN3	NM_178232.2	human	genbank	58_37c	-1	reviewed	silent	c.354	p.R118	0.551	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_C-type lectin-like,superfamily_Immunoglobulin	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377029	168377029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	168377029	168377029	G	A	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	missense	c.304	p.P102S	0.519	NULL	NULL	-	no_errors
KIAA1210	0	genome.wustl.edu	37	X	118221786	118221786	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	X	118221786	118221786	G	T	SNP	KIAA1210	NM_020721.1	human	genbank	58_37c	-1	validated	missense	c.3407	p.S1136Y	0.000	NULL	NULL	-	no_errors
KNDC1	0	genome.wustl.edu	37	10	135020480	135020480	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	10	135020480	135020480	T	A	SNP	KNDC1	ENST00000368571	human	ensembl	58_37c	+1	known	missense	c.3407	p.L1136H	0.000	NULL	HMMSmart_KIND	-	no_errors
LMAN2	0	genome.wustl.edu	37	5	176764146	176764154	+	In_Frame_Del	DEL	CGCCGGTGC	CGCCGGTGC	-	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	CGCCGGTGC	CGCCGGTGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	5	176764146	176764154	CGCCGGTGC	-	DEL	LMAN2	NM_006816.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.781_773	p.GTG258in_frame_del	1.000:0.106:0.998:0.999:0.013:1.000:1.000:0.998:1.000	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl	-	no_errors
LOC100131251	0	genome.wustl.edu	37	19	1768888	1768889	+	In_Frame_Ins	INS	-	-	GAA	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	19	1768888	1768889	-	GAA	INS	LOC100131251	XM_001719038.1	human	genbank	58_37c	-1	model	in_frame_ins	c.672_671	p.225in_frame_insS	0.001:0.000	NULL	NULL	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23685218	23685220	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	15	23685218	23685220	CTC	-	DEL	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_del	c.1959_1957	p.E653in_frame_del	0.015:0.016:0.021	NULL	NULL	-	no_errors
LOC442421	0	genome.wustl.edu	37	9	66500646	66500646	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	9	66500646	66500646	C	T	SNP	LOC442421	NR_024496.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.776	-	-	-	no_errors
LOC729944	0	genome.wustl.edu	37	11	78095393	78095393	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	78095393	78095393	G	C	SNP	LOC729944	XR_078439.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.007	-	-	-	pseudogene
MED24	0	genome.wustl.edu	37	17	38176104	38176104	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	17	38176104	38176104	C	T	SNP	MED24	ENST00000422942	human	ensembl	58_37c	-1	known	missense	c.679	p.G227R	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MN1	0	genome.wustl.edu	37	22	28195783	28195783	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	22	28195783	28195783	G	C	SNP	MN1	NM_002430.2	human	genbank	58_37c	-1	reviewed	missense	c.749	p.S250C	0.990	NULL	NULL	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17085590	17085595	+	RNA	DEL	GCGCTG	GCGCTG	-	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	GCGCTG	GCGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	17085590	17085595	GCGCTG	-	DEL	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.998:0.998:0.999:1.000:1.000:1.000	-	-	-	pseudogene
MUC2	0	genome.wustl.edu	37	11	1093069	1093069	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	1093069	1093069	A	G	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.4888	p.T1630A	0.001	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MYO7A	0	genome.wustl.edu	37	11	76903324	76903324	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	76903324	76903324	G	T	SNP	MYO7A	NM_000260.3	human	genbank	58_37c	+1	reviewed	splice_site	c.4152+1	e30+1	1.000	-	-	-	no_errors
NFKB1	0	genome.wustl.edu	37	4	103501694	103501694	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	103501694	103501694	G	A	SNP	NFKB1	NM_003998.3	human	genbank	58_37c	+1	reviewed	missense	c.733	p.A245T	1.000	superfamily_ANK,superfamily_P53_like_DNA_bnd	PatternScan_REL_1,HMMPfam_Death,HMMSmart_DEATH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_TIG,HMMSmart_IPT,superfamily_P53_like_DNA_bnd,superfamily_DEATH_like,HMMPfam_RHD,superfamily_Ig_E-set	-	no_errors
NMS	0	genome.wustl.edu	37	2	101087011	101087011	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	101087011	101087011	C	T	SNP	NMS	NM_001011717.1	human	genbank	58_37c	+1	provisional	nonsense	c.61	p.Q21*	0.008	NULL	PatternScan_NMU	-	no_errors
OR10S1	0	genome.wustl.edu	37	11	123848195	123848195	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	123848195	123848195	G	T	SNP	OR10S1	NM_001004474.1	human	genbank	58_37c	-1	provisional	silent	c.204	p.L68	0.355	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PADI2	0	genome.wustl.edu	37	1	17395659	17395659	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	17395659	17395659	G	T	SNP	PADI2	NM_007365.2	human	genbank	58_37c	-1	reviewed	silent	c.1878	p.G626	0.996	HMMPfam_PAD,superfamily_SSF55909	superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909	-	no_errors
PDYN	0	genome.wustl.edu	37	20	1961218	1961218	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	1961218	1961218	G	C	SNP	PDYN	NM_024411.2	human	genbank	58_37c	-1	reviewed	silent	c.516	p.V172	1.000	NULL	HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR	-	no_errors
PIWIL4	0	genome.wustl.edu	37	11	94331003	94331003	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	94331003	94331003	G	C	SNP	PIWIL4	NM_152431.2	human	genbank	58_37c	+1	validated	missense	c.1302	p.W434C	1.000	NULL	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,superfamily_PAZ domain	-	no_errors
PKHD1L1	0	genome.wustl.edu	37	8	110464392	110464392	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	8	110464392	110464392	C	A	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	silent	c.6390	p.A2130	0.024	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
PLEK	0	genome.wustl.edu	37	2	68613653	68613653	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	2	68613653	68613653	G	T	SNP	PLEK	NM_002664.2	human	genbank	58_37c	+1	validated	missense	c.492	p.W164C	1.000	HMMPfam_DEP,HMMSmart_DEP,superfamily_SSF46785	HMMPfam_DEP,HMMSmart_DEP,HMMPfam_PH,HMMSmart_PH,superfamily_SSF46785,superfamily_SSF50729	-	no_errors
PTCHD2	0	genome.wustl.edu	37	1	11591069	11591069	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	11591069	11591069	G	A	SNP	PTCHD2	NM_020780.1	human	genbank	58_37c	+1	validated	missense	c.3208	p.G1070R	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
RALGAPB	0	genome.wustl.edu	37	20	37177413	37177413	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	20	37177413	37177413	C	G	SNP	RALGAPB	NM_020336.2	human	genbank	58_37c	+1	validated	missense	c.2984	p.P995R	1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
SERPINA12	0	genome.wustl.edu	37	14	94953679	94953679	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	14	94953679	94953679	C	G	SNP	SERPINA12	NM_173850.2	human	genbank	58_37c	-1	provisional	silent	c.1206	p.V402	0.039	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
STXBP2	0	genome.wustl.edu	37	19	7704826	7704827	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	19	7704826	7704827	-	TG	INS	STXBP2	ENST00000320400	human	ensembl	58_37c	+1	known	frame_shift_ins	c.28_29	p.H13fs	0.000:0.001	NULL	PatternScan_VWFC_1,HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins,PatternScan_ZINC_FINGER_C2H2_1	-	no_start_codon
TCF4	0	genome.wustl.edu	37	18	52899822	52899822	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	18	52899822	52899822	G	C	SNP	TCF4	NM_001083962.1	human	genbank	58_37c	-1	reviewed	missense	c.1567	p.L523V	1.000	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
THOC3	0	genome.wustl.edu	37	5	175387038	175387038	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	5	175387038	175387038	G	A	SNP	THOC3	NM_032361.2	human	genbank	58_37c	-1	validated	silent	c.990	p.D330	1.000	HMMSmart_WD40	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TNFRSF11B	0	genome.wustl.edu	37	8	119936866	119936866	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	8	119936866	119936866	G	C	SNP	TNFRSF11B	NM_002546.3	human	genbank	58_37c	-1	reviewed	missense	c.953	p.A318G	0.007	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain	HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_DEATH domain,superfamily_TNF receptor-like	-	no_errors
TRIM60	0	genome.wustl.edu	37	4	165961691	165961691	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	4	165961691	165961691	A	G	SNP	TRIM60	NM_152620.2	human	genbank	58_37c	+1	reviewed	missense	c.467	p.E156G	0.006	NULL	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,HMMSmart_PRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
TRIM66	0	genome.wustl.edu	37	11	8670021	8670021	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	11	8670021	8670021	C	G	SNP	TRIM66	NM_014818.1	human	genbank	58_37c	-1	validated	missense	c.232	p.E78Q	1.000	HMMPfam_zf-B_box,HMMSmart_SM00336	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMSmart_SM00502,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
TTF2	0	genome.wustl.edu	37	1	117618034	117618034	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	1	117618034	117618034	G	C	SNP	TTF2	NM_003594.3	human	genbank	58_37c	+1	reviewed	missense	c.828	p.Q276H	0.004	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_zf-GRF,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ULK4	0	genome.wustl.edu	37	3	41942265	41942265	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	3	41942265	41942265	G	A	SNP	ULK4	NM_017886.2	human	genbank	58_37c	-1	validated	silent	c.1239	p.I413	1.000	superfamily_ARM-type_fold	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
UNC13A	0	genome.wustl.edu	37	19	17728543	17728543	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	19	17728543	17728543	A	G	SNP	UNC13A	NM_001080421.2	human	genbank	58_37c	-1	validated	missense	c.4790	p.I1597T	1.000	HMMPfam_Membr_traf_MHD	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_Cysteine-rich domain	-	no_errors
ZNF76	0	genome.wustl.edu	37	6	35262260	35262260	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A24L-01A-11D-A167-09	TCGA-AR-A24L-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2a93298a-d272-487c-ae4a-ec385844536e	7bb4ec17-22de-45cf-8ec8-637526f4752b	6	35262260	35262260	G	T	SNP	ZNF76	NM_003427.3	human	genbank	58_37c	+1	provisional	missense	c.1522	p.V508L	0.994	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
